splitcode: add update script; 0.30.0 -> 0.31.2 (#370167)

pkgs/by-name/sp/splitcode/add-stdint.patch

@@ -1,12 +0,0 @@
-diff --git a/src/SplitCode.h b/src/SplitCode.h
-index 45c199c..fb05250 100644
---- a/src/SplitCode.h
-+++ b/src/SplitCode.h
-@@ -18,6 +18,7 @@
- #include <stack>
- #include <cmath>
- #include <iomanip>
-+#include <cstdint>
- 
- #if defined(_MSVC_LANG)
- #define SPLITCODE_CPP_VERSION _MSVC_LANG

pkgs/by-name/sp/splitcode/package.nix

@@ -5,9 +5,10 @@
   cmake,
   libcxx,
   zlib,
+  nix-update-script,
 }:
 let
-  version = "0.30.0";
+  version = "0.31.2";
 in
 stdenv.mkDerivation {
   pname = "splitcode";
@@ -16,12 +17,10 @@ stdenv.mkDerivation {
   src = fetchFromGitHub {
     owner = "pachterlab";
     repo = "splitcode";
-    rev = "v${version}";
-    hash = "sha256-g38pJFP9uA2P5ktogAPXKgPtsEJn5vtnK5HClqqezmg=";
+    tag = "v${version}";
+    hash = "sha256-fIx8EXdhkIkWmb86HKlUPSgsKvbGcrKsuNMWo8kU+Aw=";
   };
 
-  patches = [ ./add-stdint.patch ];
-
   nativeBuildInputs = [ cmake ];
 
   buildInputs = [
@@ -36,6 +35,8 @@ stdenv.mkDerivation {
     bash ./func_tests/runtests.sh
   '';
 
+  passthru.updateScript = nix-update-script { };
+
   meta = {
     description = "Tool for flexible, efficient parsing, interpreting, and editing of technical sequences in sequencing reads";
     homepage = "https://github.com/pachterlab/splitcode";
@@ -43,5 +44,9 @@ stdenv.mkDerivation {
     platforms = lib.platforms.all;
     maintainers = with lib.maintainers; [ zimward ];
     mainProgram = "splitcode";
+    badPlatforms = [
+      # Test hangs indefinitely. See https://github.com/pachterlab/splitcode/issues/31
+      "aarch64-linux"
+    ];
   };
 }