From 653c1f69c3737a26fbe314fb9f6adc3f43e136b1 Mon Sep 17 00:00:00 2001
From: zimward <96021122+zimward@users.noreply.github.com>
Date: Thu, 2 Jan 2025 18:52:13 +0900
Subject: [PATCH] splitcode: add update script; 0.30.0 -> 0.31.2

---
 pkgs/by-name/sp/splitcode/add-stdint.patch | 12 ------------
 pkgs/by-name/sp/splitcode/package.nix      | 15 ++++++++++-----
 2 files changed, 10 insertions(+), 17 deletions(-)
 delete mode 100644 pkgs/by-name/sp/splitcode/add-stdint.patch

diff --git a/pkgs/by-name/sp/splitcode/add-stdint.patch b/pkgs/by-name/sp/splitcode/add-stdint.patch
deleted file mode 100644
index e502856b5596..000000000000
--- a/pkgs/by-name/sp/splitcode/add-stdint.patch
+++ /dev/null
@@ -1,12 +0,0 @@
-diff --git a/src/SplitCode.h b/src/SplitCode.h
-index 45c199c..fb05250 100644
---- a/src/SplitCode.h
-+++ b/src/SplitCode.h
-@@ -18,6 +18,7 @@
- #include <stack>
- #include <cmath>
- #include <iomanip>
-+#include <cstdint>
- 
- #if defined(_MSVC_LANG)
- #define SPLITCODE_CPP_VERSION _MSVC_LANG
diff --git a/pkgs/by-name/sp/splitcode/package.nix b/pkgs/by-name/sp/splitcode/package.nix
index a63a9b43681a..5e59f7c88be9 100644
--- a/pkgs/by-name/sp/splitcode/package.nix
+++ b/pkgs/by-name/sp/splitcode/package.nix
@@ -5,9 +5,10 @@
   cmake,
   libcxx,
   zlib,
+  nix-update-script,
 }:
 let
-  version = "0.30.0";
+  version = "0.31.2";
 in
 stdenv.mkDerivation {
   pname = "splitcode";
@@ -16,12 +17,10 @@ stdenv.mkDerivation {
   src = fetchFromGitHub {
     owner = "pachterlab";
     repo = "splitcode";
-    rev = "v${version}";
-    hash = "sha256-g38pJFP9uA2P5ktogAPXKgPtsEJn5vtnK5HClqqezmg=";
+    tag = "v${version}";
+    hash = "sha256-fIx8EXdhkIkWmb86HKlUPSgsKvbGcrKsuNMWo8kU+Aw=";
   };
 
-  patches = [ ./add-stdint.patch ];
-
   nativeBuildInputs = [ cmake ];
 
   buildInputs = [
@@ -36,6 +35,8 @@ stdenv.mkDerivation {
     bash ./func_tests/runtests.sh
   '';
 
+  passthru.updateScript = nix-update-script { };
+
   meta = {
     description = "Tool for flexible, efficient parsing, interpreting, and editing of technical sequences in sequencing reads";
     homepage = "https://github.com/pachterlab/splitcode";
@@ -43,5 +44,9 @@ stdenv.mkDerivation {
     platforms = lib.platforms.all;
     maintainers = with lib.maintainers; [ zimward ];
     mainProgram = "splitcode";
+    badPlatforms = [
+      # Test hangs indefinitely. See https://github.com/pachterlab/splitcode/issues/31
+      "aarch64-linux"
+    ];
   };
 }