salmon: 1.11.4 -> 1.12.1 (#533707)

pkgs/by-name/sa/salmon/package.nix

@@ -26,15 +26,15 @@
 
 stdenv.mkDerivation (finalAttrs: {
   pname = "salmon";
-  version = "1.11.4";
+  version = "1.12.1";
 
   # SALMON_PUFFERFISH_GIT_TAG defined in cmake/SalmonDependencies.cmake
   pufferFishSrc = fetchFromGitHub {
     owner = "COMBINE-lab";
     repo = "pufferfish";
     fetchSubmodules = true;
-    rev = "ace68c1c022816ba8c50a1a07c5d08f2abd597d6";
-    hash = "sha256-Zwl45sUYSmHOqsYLZPscigjgd1V3Waza0jRvhvNh7jU=";
+    rev = "1c788594cef77f0558b183281f32152e0ed22ba9";
+    hash = "sha256-N9KYmFsl90eY8R1wH1Jbi3nnNld6YVGeQjqoxYxPqtE=";
   };
 
   # SALMON_FQFEEDER_GIT_TAG defined in cmake/SalmonDependencies.cmake
@@ -49,7 +49,7 @@ stdenv.mkDerivation (finalAttrs: {
     owner = "COMBINE-lab";
     repo = "salmon";
     rev = "v${finalAttrs.version}";
-    hash = "sha256-BjWXNQtycSwCTe40kujN/YzCNhGjkz2ULGOYtI01yos=";
+    hash = "sha256-ggFPp6sHPcR4Wq/B0AaMVf0LZVIz+QcvKMNrTfnAY4w=";
   };
 
   patches = [ ./fix_pufferfish.patch ];
@@ -92,6 +92,7 @@ stdenv.mkDerivation (finalAttrs: {
   cmakeFlags = [
     "-DSALMON_PUFFERFISH_SOURCE_DIR=${finalAttrs.pufferFishSrc}"
     "-DSALMON_FQFEEDER_SOURCE_DIR=${finalAttrs.FQFeederSrc}"
+    "-DSALMON_FETCH_MISSING_DEPS=OFF"
   ];
 
   # These are needed to please htslib
@@ -120,6 +121,6 @@ stdenv.mkDerivation (finalAttrs: {
     changelog = "https://github.com/COMBINE-lab/salmon/releases/tag/" + "v${finalAttrs.version}";
     license = lib.licenses.gpl3Only;
     platforms = lib.platforms.all;
-    maintainers = [ lib.maintainers.kupac ];
+    maintainers = [ ];
   };
 })