diff --git a/pkgs/by-name/sa/salmon/package.nix b/pkgs/by-name/sa/salmon/package.nix index 4caba4faf339..f63e4a0a48ef 100644 --- a/pkgs/by-name/sa/salmon/package.nix +++ b/pkgs/by-name/sa/salmon/package.nix @@ -26,15 +26,15 @@ stdenv.mkDerivation (finalAttrs: { pname = "salmon"; - version = "1.11.4"; + version = "1.12.1"; # SALMON_PUFFERFISH_GIT_TAG defined in cmake/SalmonDependencies.cmake pufferFishSrc = fetchFromGitHub { owner = "COMBINE-lab"; repo = "pufferfish"; fetchSubmodules = true; - rev = "ace68c1c022816ba8c50a1a07c5d08f2abd597d6"; - hash = "sha256-Zwl45sUYSmHOqsYLZPscigjgd1V3Waza0jRvhvNh7jU="; + rev = "1c788594cef77f0558b183281f32152e0ed22ba9"; + hash = "sha256-N9KYmFsl90eY8R1wH1Jbi3nnNld6YVGeQjqoxYxPqtE="; }; # SALMON_FQFEEDER_GIT_TAG defined in cmake/SalmonDependencies.cmake @@ -49,7 +49,7 @@ stdenv.mkDerivation (finalAttrs: { owner = "COMBINE-lab"; repo = "salmon"; rev = "v${finalAttrs.version}"; - hash = "sha256-BjWXNQtycSwCTe40kujN/YzCNhGjkz2ULGOYtI01yos="; + hash = "sha256-ggFPp6sHPcR4Wq/B0AaMVf0LZVIz+QcvKMNrTfnAY4w="; }; patches = [ ./fix_pufferfish.patch ]; @@ -92,6 +92,7 @@ stdenv.mkDerivation (finalAttrs: { cmakeFlags = [ "-DSALMON_PUFFERFISH_SOURCE_DIR=${finalAttrs.pufferFishSrc}" "-DSALMON_FQFEEDER_SOURCE_DIR=${finalAttrs.FQFeederSrc}" + "-DSALMON_FETCH_MISSING_DEPS=OFF" ]; # These are needed to please htslib @@ -120,6 +121,6 @@ stdenv.mkDerivation (finalAttrs: { changelog = "https://github.com/COMBINE-lab/salmon/releases/tag/" + "v${finalAttrs.version}"; license = lib.licenses.gpl3Only; platforms = lib.platforms.all; - maintainers = [ lib.maintainers.kupac ]; + maintainers = [ ]; }; })