igv: 2.17.4 -> 2.19.6 (#446252)

This commit is contained in:
Weijia Wang
2025-10-13 10:49:15 +00:00
committed by GitHub
+9 -6
View File
@@ -2,7 +2,7 @@
lib,
stdenv,
fetchzip,
jdk17,
jdk21,
testers,
wrapGAppsHook3,
igv,
@@ -10,10 +10,10 @@
stdenv.mkDerivation rec {
pname = "igv";
version = "2.17.4";
version = "2.19.6";
src = fetchzip {
url = "https://data.broadinstitute.org/igv/projects/downloads/${lib.versions.majorMinor version}/IGV_${version}.zip";
sha256 = "sha256-LF/rwm/XlLHAJjiAlQVTmx5l+5Np2b5rPjoCdN/qERU=";
sha256 = "sha256-hemTOCNBfigpvlFStBbxGGLpORYPfh6vn1pyE8hKWHw=";
};
installPhase = ''
@@ -21,10 +21,10 @@ stdenv.mkDerivation rec {
cp -Rv * $out/share/
sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igv.sh
sed -i 's#\bjava\b#${jdk17}/bin/java#g' $out/share/igv.sh
sed -i 's#\bjava\b#${jdk21}/bin/java#g' $out/share/igv.sh
sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igvtools
sed -i 's#\bjava\b#${jdk17}/bin/java#g' $out/share/igvtools
sed -i 's#\bjava\b#${jdk21}/bin/java#g' $out/share/igvtools
ln -s $out/share/igv.sh $out/bin/igv
ln -s $out/share/igvtools $out/bin/igvtools
@@ -43,6 +43,9 @@ stdenv.mkDerivation rec {
description = "Visualization tool for interactive exploration of genomic datasets";
license = licenses.mit;
platforms = platforms.unix;
maintainers = [ maintainers.mimame ];
maintainers = [
maintainers.mimame
maintainers.rollf
];
};
}