From ac189ae632b31e8dda3b3fb9fde91dc4414db793 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Rolf=20Schr=C3=B6der?= <rolf.schroeder@limbus-medtec.com>
Date: Tue, 23 Sep 2025 12:14:43 +0200
Subject: [PATCH 1/2] igv: 2.17.4 -> 2.19.6

---
 pkgs/by-name/ig/igv/package.nix | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/pkgs/by-name/ig/igv/package.nix b/pkgs/by-name/ig/igv/package.nix
index a6ea26e64824..40bb0b375c5c 100644
--- a/pkgs/by-name/ig/igv/package.nix
+++ b/pkgs/by-name/ig/igv/package.nix
@@ -2,7 +2,7 @@
   lib,
   stdenv,
   fetchzip,
-  jdk17,
+  jdk21,
   testers,
   wrapGAppsHook3,
   igv,
@@ -10,10 +10,10 @@
 
 stdenv.mkDerivation rec {
   pname = "igv";
-  version = "2.17.4";
+  version = "2.19.6";
   src = fetchzip {
     url = "https://data.broadinstitute.org/igv/projects/downloads/${lib.versions.majorMinor version}/IGV_${version}.zip";
-    sha256 = "sha256-LF/rwm/XlLHAJjiAlQVTmx5l+5Np2b5rPjoCdN/qERU=";
+    sha256 = "sha256-hemTOCNBfigpvlFStBbxGGLpORYPfh6vn1pyE8hKWHw=";
   };
 
   installPhase = ''
@@ -21,10 +21,10 @@ stdenv.mkDerivation rec {
     cp -Rv * $out/share/
 
     sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igv.sh
-    sed -i 's#\bjava\b#${jdk17}/bin/java#g' $out/share/igv.sh
+    sed -i 's#\bjava\b#${jdk21}/bin/java#g' $out/share/igv.sh
 
     sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igvtools
-    sed -i 's#\bjava\b#${jdk17}/bin/java#g' $out/share/igvtools
+    sed -i 's#\bjava\b#${jdk21}/bin/java#g' $out/share/igvtools
 
     ln -s $out/share/igv.sh $out/bin/igv
     ln -s $out/share/igvtools $out/bin/igvtools

From 5a3404c6ded1a868e55ead4baf91e3ff776d136f Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Rolf=20Schr=C3=B6der?= <rolf.schroeder@limbus-medtec.com>
Date: Mon, 13 Oct 2025 12:24:08 +0200
Subject: [PATCH 2/2] igv: add rollf to maintainers

---
 pkgs/by-name/ig/igv/package.nix | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/pkgs/by-name/ig/igv/package.nix b/pkgs/by-name/ig/igv/package.nix
index 40bb0b375c5c..f15fb382ce18 100644
--- a/pkgs/by-name/ig/igv/package.nix
+++ b/pkgs/by-name/ig/igv/package.nix
@@ -43,6 +43,9 @@ stdenv.mkDerivation rec {
     description = "Visualization tool for interactive exploration of genomic datasets";
     license = licenses.mit;
     platforms = platforms.unix;
-    maintainers = [ maintainers.mimame ];
+    maintainers = [
+      maintainers.mimame
+      maintainers.rollf
+    ];
   };
 }