Sarah Clark
124 lines
2.4 KiB
Nix
124 lines
2.4 KiB
Nix
{
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lib,
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buildPythonPackage,
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fetchFromGitHub,
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pythonAtLeast,
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hatchling,
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hatch-vcs,
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numpy,
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scipy,
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flaky,
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pandas,
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pytestCheckHook,
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pytest-cov-stub,
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pytest-timeout,
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writableTmpDirAsHomeHook,
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matplotlib,
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decorator,
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jinja2,
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pooch,
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tqdm,
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packaging,
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lazy-loader,
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h5io,
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pymatreader,
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procps,
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optipng,
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}:
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buildPythonPackage rec {
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pname = "mne";
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version = "1.11.0";
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pyproject = true;
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src = fetchFromGitHub {
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owner = "mne-tools";
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repo = "mne-python";
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tag = "v${version}";
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hash = "sha256-lssSHlWUj3TU0F/31jTFc+oFdBx1C+9aolee6M8mJtw=";
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};
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postPatch = ''
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substituteInPlace doc/conf.py \
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--replace-fail '"optipng"' '"${lib.getExe optipng}"'
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substituteInPlace mne/utils/config.py \
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--replace-fail '"free"' '"${lib.getExe' procps "free"}"' \
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--replace-fail '"sysctl"' '"${lib.getExe' procps "sysctl"}"'
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'';
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build-system = [
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hatchling
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hatch-vcs
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];
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dependencies = [
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numpy
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scipy
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matplotlib
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tqdm
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pooch
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decorator
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packaging
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jinja2
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lazy-loader
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];
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optional-dependencies.hdf5 = [
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h5io
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pymatreader
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];
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nativeCheckInputs = [
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flaky
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pandas
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pytestCheckHook
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pytest-cov-stub
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pytest-timeout
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writableTmpDirAsHomeHook
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]
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++ lib.concatAttrValues optional-dependencies;
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preCheck = ''
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export MNE_SKIP_TESTING_DATASET_TESTS=true
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export MNE_SKIP_NETWORK_TESTS=1
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'';
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disabledTests = [
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# requires qtbot which is unmaintained/not in Nixpkgs:
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"test_plotting_scalebars"
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# tries to write a datetime object to hdf5, which fails:
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"test_hitachi_basic"
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# flaky
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"test_fine_cal_systems"
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"test_simulate_raw_bem"
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]
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++ lib.optionals (pythonAtLeast "3.14") [
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#https://github.com/mne-tools/mne-python/issues/13577
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"test_set_montage_artinis_basic"
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];
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pytestFlag = [
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# removes 700k lines from pytest log, remove this when scipy is at v1.17.0
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"--disable-warnings"
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];
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disabledTestMarks = [
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"slowtest"
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"ultraslowtest"
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"pgtest"
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];
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pythonImportsCheck = [ "mne" ];
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meta = {
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description = "Magnetoencephelography and electroencephalography in Python";
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mainProgram = "mne";
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homepage = "https://mne.tools";
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changelog = "https://mne.tools/stable/changes/v${lib.versions.majorMinor version}.html";
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license = lib.licenses.bsd3;
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maintainers = with lib.maintainers; [
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bcdarwin
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];
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};
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}
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