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Alexis Praga cc4bd30387 perlPackages.BioBigfile: init at 1.07 
Perl interface to manipulate BigWig and BigBeg files (for genomics)
This will be used to package VEP : uttps://www.ensembl.org/info/docs/tools/vep/script/vep_download.html

For that, only kent version 335 works at the moment.
For this commit, 2 commits for kent are needed
- e027a5d836 : packaging kent header
- 2b2c6f4c28 : enabling patches in kent
 2023-11-21 23:16:12 +01:00
Alexis Praga 2b2c6f4c28 kent: enable patches if needed. 
This is required by BioBigFile, which needs an older Kent version.
 2023-11-12 21:46:39 +01:00
Martin WeineltandGitHub 9c19bc1a55 Merge pull request #266730 from sikmir/python-telegram 
python3Packages.python-telegram: fix build
 2023-11-10 22:49:49 +01:00
Nikolay Korotkiy 8e3beac69e python3Packages.python-telegram: fix build 2023-11-11 01:48:44 +04:00
Nikolay Korotkiy 5baff4f4c4 python3Packages.telegram-text: init at 0.1.2 2023-11-11 01:48:44 +04:00
Peder Bergebakken SundtandGitHub cbc984043d Merge pull request #265264 from OPNA2608/update/palemoon-bin 
palemoon-bin: 32.4.1 -> 32.5.0
 2023-11-10 23:34:55 +02:00
Kira BruneauandGitHub 0cc094c041 Merge pull request #265886 from kira-bruneau/at-spi2-core 
nixos/gnome/at-spi2-core: fix disabling a11y in all contexts
 2023-11-10 16:31:53 -05:00
Niklas HambüchenandJörg Thalheim dcceeb9868 manual: tests: Describe how to port-forward into test VMs 2023-11-10 22:29:12 +01:00
Niklas HambüchenandJörg Thalheim 5d73d954cd manual: Don't suggest exposing VM port to local network. 
The setting

    QEMU_NET_OPTS="hostfwd=tcp::2222-:22"

caused the VM's port 2222 to be advertised on the host as
`0.0.0.0:2222`, thus anybody in the local network of the host
could SSH into the VM.
Instead, port-forward to localhost only.

Use `127.0.0.1` also on the VM side, otherwise connections to
services that, in the VM, bind to `127.0.0.1` only
(doing the safe approach) do not work.

See e.g. https://github.com/NixOS/nixpkgs/issues/100192
for more info why localhost listening is the best default.
 2023-11-10 22:29:12 +01:00
Peder Bergebakken SundtandGitHub db9269399b Merge pull request #264329 from SuperSamus/flycast-update 
flycast: 2.1 -> 2.2
 2023-11-10 23:14:54 +02:00
Peder Bergebakken SundtandGitHub 32a49bf4b8 Merge pull request #266030 from nevivurn/feat/apt-cacher-ng-glibc 
apt-cacher-ng: fix build for glibc >= 2.38
 2023-11-10 23:06:29 +02:00
Michele Guerini RoccoandGitHub eb62077e19 Merge pull request #266452 from r-ryantm/auto-update/pdns-recursor 
pdns-recursor: 4.9.1 -> 4.9.2
 2023-11-10 22:04:53 +01:00
Peder Bergebakken SundtandGitHub e5f2b7e703 Merge pull request #266451 from Emantor/fix/labgrid 
python3Packages.labgrid: fix the build
 2023-11-10 22:31:53 +02:00
Peder Bergebakken SundtandGitHub 98bed4d0b5 Merge pull request #266389 from robert-manchester/scikit-rf-fix 
python311Packages.scikit-rf: 0.29.0 -> 0.29.1; fix build
 2023-11-10 22:17:11 +02:00
ArtturiandGitHub cc0b49cc27 Merge pull request #266253 from amjoseph-nixpkgs/pr/skalibs/fixcross 2023-11-10 21:57:44 +02:00
Robert HensingandGitHub cfd83c931f Merge pull request #261732 from tweag/fileset.fromSource 
`lib.fileset.fromSource`: init
 2023-11-10 20:32:51 +01:00
ArtturiandGitHub e7a5bb59fb Merge pull request #230650 from e1mo/ejabberd-awk 2023-11-10 21:07:59 +02:00
ArtturiandGitHub 55f883b7c7 Merge pull request #265993 from natsukium/tabula-py/update 2023-11-10 21:04:12 +02:00
LassulusandGitHub dee8714463 Merge pull request #265512 from zupo/master 2023-11-10 19:57:42 +01:00
Fabian AffolterandGitHub 593c11ae9a Merge pull request #266612 from r-ryantm/auto-update/python311Packages.maison 
python311Packages.maison: 1.4.0 -> 1.4.1
 2023-11-10 19:52:08 +01:00
Fabian AffolterandGitHub 3eb27aa4f1 Merge pull request #266614 from r-ryantm/auto-update/python311Packages.mechanize 
python311Packages.mechanize: 0.4.8 -> 0.4.9
 2023-11-10 19:51:43 +01:00
Fabian AffolterandGitHub 436e8dc7c7 Merge pull request #266615 from r-ryantm/auto-update/python311Packages.omemo-dr 
python311Packages.omemo-dr: 1.0.0 -> 1.0.1
 2023-11-10 19:51:30 +01:00
AtemuandGitHub b53d47f5ef Merge pull request #266660 from mahmoudk1000/master 
anki-bin: 23.10 -> 23.10.1
 2023-11-10 19:37:19 +01:00
ArtturiandGitHub 6f726bd5aa Merge pull request #256816 from Artturin/pythondocpython3packages 2023-11-10 20:25:00 +02:00
Bruno BigrasandGitHub 6dabcc9ecf Merge pull request #265996 from bbigras/veilid 
veilid: 0.2.4 -> 0.2.5
 2023-11-10 13:16:44 -05:00
happysaladaandYt 463208b41e gleam: fix darwin build 2023-11-10 18:09:33 +00:00
Connor BakerandGitHub eef729c866 Merge pull request #266077 from ConnorBaker/feat/nccl-2_19_3 
cudaPackages.nccl: 2.18.5-1 -> 2.19.3-1; build on platforms.linux
 2023-11-10 12:48:35 -05:00
ArtturiandGitHub b3610b80ce Merge pull request #187100 from onny/dynd 2023-11-10 19:30:18 +02:00
Nick CaoandGitHub fab1f148ba Merge pull request #265892 from bcdarwin/vxl-enable-tests 
vxl: enable tests
 2023-11-10 12:29:43 -05:00
LassulusandGitHub 16d6d27f34 Merge pull request #266692 from Mic92/spice-gtk 
spice-gtk: fix sound (gstreamer plugins)
 2023-11-10 18:28:13 +01:00
Jonathan DickinsonandAnderson Torres e7f4921542 monaspace: init at 1.000 
Co-authored-by: Jonathan Dickinson <oss@jonathan.dickinson.id>
Co-authored-by: Anderson Torres <torres.anderson.85@protonmail.com>
 2023-11-10 14:19:01 -03:00
Nick CaoandGitHub 558d433d96 Merge pull request #266662 from wrbbz/pulumi-bin-3.92.0 
pulumi-bin: 3.91.1 -> 3.92.0
 2023-11-10 12:10:42 -05:00
Nick CaoandGitHub f01ee0bf06 Merge pull request #266673 from NickCao/telegram-desktop 
telegram-desktop: 4.11.5 -> 4.11.6
 2023-11-10 12:09:16 -05:00
R. RyantmandBjørn Forsman a7f1cc0ce1 stress-ng: 0.17.00 -> 0.17.01 2023-11-10 17:56:49 +01:00
OTABI TomoyaandGitHub 7585c07e67 Merge pull request #266636 from r-ryantm/auto-update/python311Packages.streamlit 
python311Packages.streamlit: 1.28.0 -> 1.28.1
 2023-11-11 01:49:09 +09:00
OTABI TomoyaandGitHub 1dbbeee925 Merge pull request #266263 from hexchen/init-ionoscloud 
python311Packages.ionoscloud: init at 6.1.8
 2023-11-11 01:47:48 +09:00
OTABI TomoyaandGitHub b69c95912f Merge pull request #266114 from tu-maurice/unstable/python-fixes 
python311Packages.geoalchemy2: 0.14.1 -> 0.14.2
 2023-11-11 01:43:34 +09:00
Weijia WangandGitHub 982816eaee Merge pull request #266670 from reckenrode/broken-darwin 
persepolis,qnotero: mark broken on Darwin for ZHF
 2023-11-10 17:26:43 +01:00
P. R. d. OandAnderson Torres 681973a7c9 sherlock: 0.14.3 -> unstable-2023-10-06, use buildPythonApplication 2023-11-10 13:22:19 -03:00
7c6f434candGitHub 6d0e4478f8 Merge pull request #266664 from vbgl/gajim-1.8.3 
gajim: 1.8.2 → 1.8.3
 2023-11-10 16:14:42 +00:00
Bruno BigrasandGitHub a820a9b1fa Merge pull request #264333 from pokon548/update-todoist-electron 
todoist-electron: 8.6.0 -> 8.9.3
 2023-11-10 11:09:31 -05:00
Jörg Thalheim ba1389029e spice-gtk: fix sound (gstreamer plugins) 
propagatedBuildInputs is not the right way to propagate runtime dependencies.
wrapGAppsHook makes sure that we have gstreamer environment set.
 2023-11-10 17:04:56 +01:00
Weijia WangandGitHub f533a7618f Merge pull request #266580 from wegank/pillow-heif-darwin 
python311Packages.pillow-heif: fix build on darwin
 2023-11-10 16:52:01 +01:00
Mahmoud Ayman 6465bb8af2 maintainers: remove atemu 2023-11-10 17:27:13 +02:00
ArtturiandGitHub 2e6aa8fc5d Merge pull request #230180 from kevinmehall/jupyter-py39 2023-11-10 17:16:30 +02:00
Martin WeineltandGitHub 014a135f3b Merge pull request #266472 from SuperSamus/radarr-sonarr-mainprogram 
{rad,son,baz,lid,read,recycl}arr: add mainProgram
 2023-11-10 16:14:22 +01:00
Ben Darwin a7b3b431e9 vxl: enable tests 2023-11-10 10:13:23 -05:00
7c6f434candGitHub 5c93b37109 Merge pull request #264760 from r-ryantm/auto-update/R 
R: 4.3.1 -> 4.3.2
 2023-11-10 15:12:42 +00:00
7c6f434candGitHub 9da6f812b1 Merge pull request #266023 from r-ryantm/auto-update/octave 
octave: 8.3.0 -> 8.4.0
 2023-11-10 15:12:03 +00:00
Martin WeineltandGitHub 6cd5fb6f8b Merge pull request #263048 from Madouura/pr/triton 
Make openai-triton/pytorch free again (and various fixes)
 2023-11-10 15:58:48 +01:00