multiqc: 1.28 -> 1.29

Polars is now a dependencies.
Running it with nix in some configuration fails to remove temporary
directories. Before skipping this step, it retries 10 times and doubles the waiting
time each time. We set max retries to 2.

pkgs/by-name/mu/multiqc/package.nix

@@ -10,7 +10,7 @@
 
 python3Packages.buildPythonApplication rec {
   pname = "multiqc";
-  version = "1.28";
+  version = "1.29";
 
   # Two data sources. One for the code, another for the test data
   srcs = [
@@ -19,7 +19,7 @@ python3Packages.buildPythonApplication rec {
       owner = "MultiQC";
       repo = "MultiQC";
       tag = "v${version}";
-      hash = "sha256-rYZaecoVAO1RE44XCw60aVwvWhKcZ/RrG3WpVRcLbuA=";
+      hash = "sha256-KKLdDNf889lEbCyNpJFZoE8rNO50CRzNP4hKpKHRAcE=";
     })
     (fetchFromGitHub {
       owner = "MultiQC";
@@ -30,6 +30,15 @@ python3Packages.buildPythonApplication rec {
     })
   ];
 
+  # Multiqc cannot remove temporary directories in some case.
+  # Default is 10 retries, lower it to 2
+  postPatch = ''
+    substituteInPlace multiqc/utils/util_functions.py \
+      --replace-fail \
+        "max_retries: int = 10," \
+        "max_retries: int = 2,"
+  '';
+
   sourceRoot = "multiqc";
 
   dependencies = with python3Packages; [
@@ -43,6 +52,7 @@ python3Packages.buildPythonApplication rec {
     numpy
     packaging
     requests
+    polars
     pillow
     plotly
     pyyaml