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igv: use jdk17 instead of jdk11 (#285521)

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This commit is contained in:
Rolf Schröder
2024-02-01 14:42:34 +01:00
committed by GitHub
parent dc7f958989
commit f835df35c7
1 changed files with 8 additions and 3 deletions
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pkgs/applications/science/biology/igv/default.nix
+8 -3
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@@ -1,4 +1,4 @@
{ lib, stdenv, fetchzip, jdk11, wrapGAppsHook }:
{ lib, stdenv, fetchzip, jdk17, testers, wrapGAppsHook, igv }:
stdenv.mkDerivation rec {
pname = "igv";
@@ -13,10 +13,10 @@ stdenv.mkDerivation rec {
cp -Rv * $out/share/
sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igv.sh
sed -i 's#java#${jdk11}/bin/java#g' $out/share/igv.sh
sed -i 's#java#${jdk17}/bin/java#g' $out/share/igv.sh
sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igvtools
sed -i 's#java#${jdk11}/bin/java#g' $out/share/igvtools
sed -i 's#java#${jdk17}/bin/java#g' $out/share/igvtools
ln -s $out/share/igv.sh $out/bin/igv
ln -s $out/share/igvtools $out/bin/igvtools
@@ -26,6 +26,11 @@ stdenv.mkDerivation rec {
'';
nativeBuildInputs = [ wrapGAppsHook ];
passthru.tests.version = testers.testVersion {
package = igv;
};
meta = with lib; {
homepage = "https://www.broadinstitute.org/igv/";
description = "A visualization tool for interactive exploration of genomic datasets";