casacpp, libsakura, python3Packages.{casaconfig,casatools,casatasks}: init; casacore: update build inputs (#507670)
This commit is contained in:
Luna Nova
@@ -0,0 +1,29 @@
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diff --git a/CMakeLists.txt b/CMakeLists.txt
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index 574150c05..109e96889 100644
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--- a/CMakeLists.txt
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+++ b/CMakeLists.txt
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@@ -566,6 +566,14 @@ foreach (module ${_modules})
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endforeach (module)
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# Install pkg-config support file
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+set(pc_req_public "")
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+if (_usewcs AND WCSLIB_FOUND)
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+ list(APPEND pc_req_public "wcslib")
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+endif()
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+if (_usefits AND CFITSIO_FOUND)
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+ list(APPEND pc_req_public "cfitsio")
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+endif()
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+list(JOIN pc_req_public " " pc_req_public)
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CONFIGURE_FILE("casacore.pc.in" "casacore.pc" @ONLY)
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set(CASA_PKGCONFIG_INSTALL_PREFIX "${CMAKE_INSTALL_PREFIX}/lib/pkgconfig")
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INSTALL(FILES "${CMAKE_CURRENT_BINARY_DIR}/casacore.pc" DESTINATION "${CASA_PKGCONFIG_INSTALL_PREFIX}")
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diff --git a/casacore.pc.in b/casacore.pc.in
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index 6881300df..d0a01b240 100644
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--- a/casacore.pc.in
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+++ b/casacore.pc.in
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@@ -9,4 +9,4 @@ Version: @PROJECT_VERSION@
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Requires: @pc_req_public@
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Requires.private: @pc_req_private@
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Libs: -L${libdir} @PRIVATE_LIBS@
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-Cflags: -I${includedir} -I@WCSLIB_INCLUDE_DIR@
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+Cflags: -I${includedir}
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@@ -14,8 +14,33 @@
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fftwFloat,
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readline,
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gsl,
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mpi,
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adios2,
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hdf5,
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llvmPackages,
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mpiSupport ? false,
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adios2Support ? false,
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hdf5Support ? false,
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}:
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let
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casacorePackages = {
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adios2 = adios2.override {
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inherit mpi mpiSupport;
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};
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fftw = fftw.override {
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inherit mpi;
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enableMpi = mpiSupport;
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};
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fftwFloat = fftwFloat.override {
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inherit mpi;
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enableMpi = mpiSupport;
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};
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hdf5 = hdf5.override {
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inherit mpi mpiSupport;
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cppSupport = !mpiSupport;
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};
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};
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in
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stdenv.mkDerivation (finalAttrs: {
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pname = "casacore";
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version = "3.8.0";
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@@ -27,31 +52,55 @@ stdenv.mkDerivation (finalAttrs: {
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hash = "sha256-NOxuHMCuHGk9XuWXMwQTN6kOFDI0QuHMgfNRDdlPw44=";
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};
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strictDeps = true;
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nativeBuildInputs = [
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cmake
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gfortran
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flex
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bison
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];
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]
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++ lib.optional mpiSupport mpi;
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propagatedBuildInputs = [
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wcslib
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cfitsio
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]
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++ lib.optional hdf5Support casacorePackages.hdf5
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++ lib.optional mpiSupport mpi
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++ lib.optional adios2Support casacorePackages.adios2;
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buildInputs = [
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blas
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lapack
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cfitsio
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wcslib
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fftw
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fftwFloat
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casacorePackages.fftw
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casacorePackages.fftwFloat
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readline
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gsl
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]
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++ lib.optionals stdenv.hostPlatform.isDarwin [
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llvmPackages.openmp
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];
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patches = [
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# Fix the generated .pc file: set Requires from a variable instead of
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# leaving it empty, and remove hardcoded absolute cmake build paths from
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# Cflags (which would embed /nix/store paths from the build environment).
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./casacore-pkgconfig.patch
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];
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enableParallelBuilding = true;
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strictDeps = true;
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cmakeFlags = [
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(lib.cmakeBool "ENABLE_SHARED" (!stdenv.hostPlatform.isStatic))
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(lib.cmakeBool "BUILD_PYTHON3" false) # TODO: If/when we package python-casacore, this will change
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(lib.cmakeBool "BUILD_PYTHON3" false)
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(lib.cmakeBool "USE_OPENMP" true)
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(lib.cmakeBool "USE_ADIOS2" adios2Support)
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(lib.cmakeBool "USE_HDF5" hdf5Support)
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(lib.cmakeBool "USE_MPI" mpiSupport)
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(lib.cmakeBool "PORTABLE" true)
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(lib.cmakeBool "USE_PCH" false)
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(lib.cmakeBool "BUILD_FFTPACK_DEPRECATED" true) # Needed for casacpp
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];
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meta = {
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@@ -0,0 +1,22 @@
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diff --git a/CMakeLists.txt b/CMakeLists.txt
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index 4d3cae2326..7954107f8f 100644
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--- a/CMakeLists.txt
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+++ b/CMakeLists.txt
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@@ -195,6 +195,7 @@ foreach(_component IN LISTS casacpp_all_components)
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endforeach()
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# Install pkg-config support file
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+set(pc_req_public "casacore cfitsio libxml-2.0 gsl protobuf grpc++ fftw3 libsakura")
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CONFIGURE_FILE("casacpp.pc.in" "casacpp.pc" @ONLY)
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set(CASACPP_PKGCONFIG_INSTALL_PREFIX "${CMAKE_INSTALL_PREFIX}/lib/pkgconfig")
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INSTALL(FILES "${CMAKE_CURRENT_BINARY_DIR}/casacpp.pc" DESTINATION "${CASACPP_PKGCONFIG_INSTALL_PREFIX}")
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diff --git a/casacpp.pc.in b/casacpp.pc.in
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index 08a996b2c3..699cfb7319 100644
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--- a/casacpp.pc.in
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+++ b/casacpp.pc.in
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@@ -9,4 +9,4 @@ Version: @PROJECT_VERSION@
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Requires: @pc_req_public@
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Requires.private: @pc_req_private@
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Libs: -L${libdir} @PRIVATE_LIBS@
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-Cflags: -DWITHOUT_ACS -DWITHOUT_BOOST -I${includedir}/casacpp -I${includedir}/casacpp/protobuf_generated -I@CASACORE_INCLUDE_DIRS@ -I@CFITSIO_INCLUDE_DIRS@ -I@LibXML_INCLUDE_DIRS@ -I@GSL_INCLUDE_DIRS@
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+Cflags: -DWITHOUT_ACS -DWITHOUT_BOOST -I${includedir}/casacpp -I${includedir}/casacpp/protobuf_generated
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@@ -0,0 +1,120 @@
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{
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lib,
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stdenv,
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fetchgit,
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cmake,
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common-updater-scripts,
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curl,
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gnugrep,
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writeShellScript,
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pkg-config,
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flex,
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bison,
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gfortran,
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casacore,
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libsakura,
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grpc,
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protobuf,
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gsl,
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libxml2,
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libxslt,
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fftw,
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fftwFloat,
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sqlite,
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openssl,
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mpi,
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mpiSupport ? false,
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}:
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let
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casacppPackages = {
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fftw = fftw.override {
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inherit mpi;
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enableMpi = mpiSupport;
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};
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fftwFloat = fftwFloat.override {
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inherit mpi;
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enableMpi = mpiSupport;
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};
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casacore = casacore.override {
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inherit mpi mpiSupport;
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};
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};
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in
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stdenv.mkDerivation (finalAttrs: {
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pname = "casacpp";
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version = "6.7.5.18";
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src = fetchgit {
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url = "https://open-bitbucket.nrao.edu/scm/casa/casa6.git";
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rev = "refs/tags/${finalAttrs.version}";
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hash = "sha256-75oIlaNAyu70KWSjz38LoYAvV7RJgzH/X9uBnGpriF4=";
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fetchSubmodules = false;
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};
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sourceRoot = "${finalAttrs.src.name}/casatools/src/code";
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patches = [
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# Fix the generated .pc file: set Requires from a variable instead of
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# leaving it empty, and remove hardcoded absolute cmake build paths from
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# Cflags (which would embed /nix/store paths from the build environment).
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./casacpp-pkgconfig.patch
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];
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postPatch = ''
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sed -i '/execute_process(COMMAND/,/OUTPUT_VARIABLE CASACPP_VERSION)/c\set(CASACPP_VERSION "${finalAttrs.version}")' CMakeLists.txt
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sed -i 's/string(REGEX MATCH.*CASACPP_VERSION)//' CMakeLists.txt
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substituteInPlace CMakeLists.txt \
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--replace-fail \
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'find_package(gRPC QUIET)' \
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'set(gRPC_FOUND 0)'
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'';
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strictDeps = true;
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__structuredAttrs = true;
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nativeBuildInputs = [
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cmake
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pkg-config
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flex
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bison
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gfortran
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grpc # for grpc_cpp_plugin
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]
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++ lib.optional mpiSupport mpi;
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buildInputs = [
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libxslt
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sqlite
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openssl
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];
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propagatedBuildInputs = [
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casacppPackages.casacore
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protobuf
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grpc
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casacppPackages.fftw
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casacppPackages.fftwFloat
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libsakura
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gsl
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libxml2
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];
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cmakeFlags = lib.optionals stdenv.hostPlatform.isDarwin [
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(lib.cmakeFeature "CMAKE_CXX_FLAGS" "-ffp-contract=off")
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];
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enableParallelBuilding = true;
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passthru.updateScript = writeShellScript "update-casacpp" ''
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version=$(${lib.getExe curl} -s https://pypi.org/pypi/casatasks/json | ${lib.getExe gnugrep} -oP '"version"\s*:\s*"\K[^"]+' | head -1)
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${lib.getExe' common-updater-scripts "update-source-version"} casacpp "$version"
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'';
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meta = {
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description = "C++ core libraries for radio interferometry data reduction";
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homepage = "https://casa.nrao.edu/";
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license = lib.licenses.gpl2Only;
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platforms = lib.platforms.unix;
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maintainers = with lib.maintainers; [ kiranshila ];
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};
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})
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@@ -0,0 +1,49 @@
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{
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lib,
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stdenv,
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fetchFromGitHub,
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cmake,
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eigen,
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fftw,
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}:
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stdenv.mkDerivation (finalAttrs: {
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pname = "libsakura";
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version = "5.3.2";
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src = fetchFromGitHub {
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owner = "tnakazato";
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repo = "sakura";
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tag = "${finalAttrs.pname}-${finalAttrs.version}";
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hash = "sha256-QkVZXb9m4iMTeFYUOK1u+9HM0oMu48bwe7AovafanVU=";
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};
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sourceRoot = "${finalAttrs.src.name}/${finalAttrs.pname}";
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strictDeps = true;
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__structuredAttrs = true;
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nativeBuildInputs = [
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cmake
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];
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buildInputs = [
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eigen
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fftw
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];
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cmakeFlags = [
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(lib.cmakeFeature "SIMD_ARCH" "GENERIC")
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(lib.cmakeBool "PYTHON_BINDING" false)
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(lib.cmakeBool "BUILD_DOC" false)
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(lib.cmakeBool "ENABLE_TEST" false)
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];
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meta = {
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homepage = "https://tnakazato.github.io/sakura/";
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changelog = "https://github.com/tnakazato/sakura/releases/tag/${finalAttrs.pname}-${finalAttrs.version}";
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description = "Thread-safe library for signal processing in radio astronomy";
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maintainers = with lib.maintainers; [ kiranshila ];
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license = lib.licenses.lgpl3Plus;
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platforms = lib.platforms.unix;
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};
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})
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@@ -0,0 +1,30 @@
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{
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lib,
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buildPythonPackage,
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fetchPypi,
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setuptools,
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certifi,
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}:
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buildPythonPackage (finalAttrs: {
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pname = "casaconfig";
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version = "1.5.0";
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pyproject = true;
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src = fetchPypi {
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inherit (finalAttrs) pname version;
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hash = "sha256-/O0rzef1Yqn+ezjTWfe1oRIh6FyU1W3Ev9tuXldukys=";
|
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};
|
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|
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build-system = [ setuptools ];
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dependencies = [ certifi ];
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meta = {
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description = "Reference data and converters for CASA operation";
|
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homepage = "https://casa.nrao.edu/";
|
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license = lib.licenses.asl20;
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maintainers = with lib.maintainers; [ kiranshila ];
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platforms = lib.platforms.all;
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};
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})
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@@ -0,0 +1,106 @@
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{
|
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lib,
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buildPythonPackage,
|
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fetchgit,
|
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fetchurl,
|
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common-updater-scripts,
|
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curl,
|
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gnugrep,
|
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gnused,
|
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writeShellScript,
|
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jdk,
|
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wheel,
|
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casatools,
|
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casaconfig,
|
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matplotlib,
|
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scipy,
|
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certifi,
|
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pyerfa,
|
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setuptools,
|
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pipInstallHook,
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}:
|
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buildPythonPackage (finalAttrs: {
|
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pname = "casatasks";
|
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version = "6.7.5.18";
|
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|
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src = fetchgit {
|
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url = "https://open-bitbucket.nrao.edu/scm/casa/casa6.git";
|
||||
rev = "refs/tags/${finalAttrs.version}";
|
||||
hash = "sha256-75oIlaNAyu70KWSjz38LoYAvV7RJgzH/X9uBnGpriF4=";
|
||||
fetchSubmodules = false;
|
||||
};
|
||||
|
||||
sourceRoot = "${finalAttrs.src.name}/casatasks";
|
||||
|
||||
format = "other";
|
||||
|
||||
nativeBuildInputs = [
|
||||
jdk
|
||||
wheel
|
||||
setuptools
|
||||
pipInstallHook
|
||||
];
|
||||
|
||||
propagatedBuildInputs = [
|
||||
casatools
|
||||
casaconfig
|
||||
matplotlib
|
||||
scipy
|
||||
certifi
|
||||
pyerfa
|
||||
];
|
||||
|
||||
jarName = "xml-casa-assembly-1.88.jar";
|
||||
|
||||
xml_jar = fetchurl {
|
||||
url = "http://casa.nrao.edu/download/devel/xml-casa/java/${finalAttrs.jarName}";
|
||||
hash = "sha256-UJCiXLXAe7Prm1qGXJ9jbuZcgKhPTSrU8qnf4C5Goxs="; # xml-jar
|
||||
};
|
||||
|
||||
postPatch = ''
|
||||
mkdir -p java
|
||||
cp ${finalAttrs.xml_jar} java/${finalAttrs.jarName}
|
||||
'';
|
||||
|
||||
buildPhase = ''
|
||||
runHook preBuild
|
||||
export HOME=$(mktemp -d)
|
||||
mkdir -p $HOME/.casa/data
|
||||
cat > $HOME/.casa/config.py <<EOF
|
||||
measures_auto_update=False
|
||||
data_auto_update=False
|
||||
EOF
|
||||
python setup.py bdist_wheel --version ${finalAttrs.version}
|
||||
runHook postBuild
|
||||
'';
|
||||
|
||||
# Tests require a full CASA data directory and network access
|
||||
doCheck = false;
|
||||
|
||||
passthru.updateScript = writeShellScript "update-casatasks" ''
|
||||
set -euo pipefail
|
||||
version=$(${lib.getExe curl} -s https://pypi.org/pypi/casatasks/json | ${lib.getExe gnugrep} -oP '"version"\s*:\s*"\K[^"]+' | head -1)
|
||||
${lib.getExe' common-updater-scripts "update-source-version"} python3Packages.casatasks "$version"
|
||||
|
||||
# Extract the jar filename from the xml-casa script at the new tag
|
||||
jar_name=$(${lib.getExe curl} -s \
|
||||
"https://open-bitbucket.nrao.edu/rest/api/1.0/projects/CASA/repos/casa6/raw/casatools/scripts/xml-casa?at=refs/tags/$version" | \
|
||||
${lib.getExe gnugrep} -oP '(?<=jarfile_name = ").*(?=")')
|
||||
jar_url="http://casa.nrao.edu/download/devel/xml-casa/java/$jar_name"
|
||||
jar_sri=$(nix-prefetch-url --type sha256 "$jar_url" | xargs nix hash convert --hash-algo sha256 --to sri)
|
||||
|
||||
nix_file=pkgs/development/python-modules/casatasks/default.nix
|
||||
${lib.getExe gnused} -i \
|
||||
-e "s|xml-casa-assembly-[^ \"]*\.jar|$jar_name|" \
|
||||
-e "s|hash = \"sha256-.*\"; # xml-jar|hash = \"$jar_sri\"; # xml-jar|" \
|
||||
"$nix_file"
|
||||
'';
|
||||
|
||||
meta = {
|
||||
description = "High-level Python tasks for radio astronomy data reduction";
|
||||
homepage = "https://casa.nrao.edu/";
|
||||
license = lib.licenses.lgpl2Only;
|
||||
platforms = lib.platforms.unix;
|
||||
maintainers = with lib.maintainers; [ kiranshila ];
|
||||
};
|
||||
})
|
||||
@@ -0,0 +1,113 @@
|
||||
{
|
||||
lib,
|
||||
buildPythonPackage,
|
||||
fetchgit,
|
||||
fetchurl,
|
||||
common-updater-scripts,
|
||||
curl,
|
||||
gnugrep,
|
||||
gnused,
|
||||
writeShellScript,
|
||||
cmake,
|
||||
pkg-config,
|
||||
swig,
|
||||
flex,
|
||||
bison,
|
||||
gfortran,
|
||||
jdk,
|
||||
setuptools,
|
||||
wheel,
|
||||
build,
|
||||
numpy,
|
||||
casaconfig,
|
||||
casacpp,
|
||||
xercesc,
|
||||
grpc,
|
||||
readline,
|
||||
}:
|
||||
buildPythonPackage (finalAttrs: {
|
||||
pname = "casatools";
|
||||
version = "6.7.5.18";
|
||||
|
||||
src = fetchgit {
|
||||
url = "https://open-bitbucket.nrao.edu/scm/casa/casa6.git";
|
||||
rev = "refs/tags/${finalAttrs.version}";
|
||||
hash = "sha256-75oIlaNAyu70KWSjz38LoYAvV7RJgzH/X9uBnGpriF4=";
|
||||
fetchSubmodules = false;
|
||||
};
|
||||
|
||||
sourceRoot = "${finalAttrs.src.name}/casatools";
|
||||
|
||||
format = "pyproject";
|
||||
|
||||
nativeBuildInputs = [
|
||||
cmake
|
||||
pkg-config
|
||||
swig
|
||||
flex
|
||||
bison
|
||||
gfortran
|
||||
jdk
|
||||
grpc
|
||||
setuptools
|
||||
wheel
|
||||
build
|
||||
];
|
||||
|
||||
dontConfigure = true;
|
||||
|
||||
buildInputs = [
|
||||
casacpp
|
||||
xercesc
|
||||
readline
|
||||
];
|
||||
|
||||
propagatedBuildInputs = [
|
||||
numpy
|
||||
casaconfig
|
||||
];
|
||||
|
||||
jarName = "xml-casa-assembly-1.88.jar";
|
||||
|
||||
xml_jar = fetchurl {
|
||||
url = "http://casa.nrao.edu/download/devel/xml-casa/java/${finalAttrs.jarName}";
|
||||
hash = "sha256-UJCiXLXAe7Prm1qGXJ9jbuZcgKhPTSrU8qnf4C5Goxs="; # xml-jar
|
||||
};
|
||||
|
||||
postPatch = ''
|
||||
mkdir -p scripts/java
|
||||
cp ${finalAttrs.xml_jar} scripts/java/${finalAttrs.jarName}
|
||||
echo "${finalAttrs.version} ${finalAttrs.version}" > version.txt
|
||||
sed -i 's/def compute_version():/def compute_version():\n return "${finalAttrs.version}"\ndef _compute_version_orig():/' setup.py
|
||||
'';
|
||||
|
||||
# Tests require a full CASA data directory and network access
|
||||
doCheck = false;
|
||||
|
||||
passthru.updateScript = writeShellScript "update-casatools" ''
|
||||
set -euo pipefail
|
||||
version=$(${lib.getExe curl} -s https://pypi.org/pypi/casatools/json | ${lib.getExe gnugrep} -oP '"version"\s*:\s*"\K[^"]+' | head -1)
|
||||
${lib.getExe' common-updater-scripts "update-source-version"} python3Packages.casatools "$version"
|
||||
|
||||
# Extract the jar filename from the xml-casa script at the new tag
|
||||
jar_name=$(${lib.getExe curl} -s \
|
||||
"https://open-bitbucket.nrao.edu/rest/api/1.0/projects/CASA/repos/casa6/raw/casatools/scripts/xml-casa?at=refs/tags/$version" | \
|
||||
${lib.getExe gnugrep} -oP '(?<=jarfile_name = ").*(?=")')
|
||||
jar_url="http://casa.nrao.edu/download/devel/xml-casa/java/$jar_name"
|
||||
jar_sri=$(nix-prefetch-url --type sha256 "$jar_url" | xargs nix hash convert --hash-algo sha256 --to sri)
|
||||
|
||||
nix_file=pkgs/development/python-modules/casatools/default.nix
|
||||
${lib.getExe gnused} -i \
|
||||
-e "s|xml-casa-assembly-[^ \"]*\.jar|$jar_name|" \
|
||||
-e "s|hash = \"sha256-.*\"; # xml-jar|hash = \"$jar_sri\"; # xml-jar|" \
|
||||
"$nix_file"
|
||||
'';
|
||||
|
||||
meta = {
|
||||
description = "Python interface to core radio astronomy data processing routines";
|
||||
homepage = "https://casa.nrao.edu/";
|
||||
license = lib.licenses.gpl2Only;
|
||||
platforms = lib.platforms.unix;
|
||||
maintainers = with lib.maintainers; [ kiranshila ];
|
||||
};
|
||||
})
|
||||
@@ -2512,6 +2512,8 @@ self: super: with self; {
|
||||
|
||||
casa-formats-io = callPackage ../development/python-modules/casa-formats-io { };
|
||||
|
||||
casaconfig = callPackage ../development/python-modules/casaconfig { };
|
||||
|
||||
casadi = toPythonModule (
|
||||
pkgs.casadi.override {
|
||||
pythonSupport = true;
|
||||
@@ -2519,6 +2521,10 @@ self: super: with self; {
|
||||
}
|
||||
);
|
||||
|
||||
casatasks = callPackage ../development/python-modules/casatasks { };
|
||||
|
||||
casatools = callPackage ../development/python-modules/casatools { };
|
||||
|
||||
case-converter = callPackage ../development/python-modules/case-converter { };
|
||||
|
||||
cashaddress = callPackage ../development/python-modules/cashaddress { };
|
||||
|
||||
Reference in New Issue
Block a user