Merge pull request #282686 from fabaff/msprime-bump

python311Packages.msprime: 1.2.0 -> 1.3.0

pkgs/development/python-modules/msprime/default.nix

@@ -1,42 +1,32 @@
 { lib
 , buildPythonPackage
-, fetchPypi
-, fetchpatch
-, oldest-supported-numpy
-, setuptools-scm
-, wheel
-, pythonOlder
-, gsl
-, numpy
-, newick
-, tskit
 , demes
-, pytestCheckHook
+, fetchPypi
+, gsl
+, newick
+, numpy
+, oldest-supported-numpy
 , pytest-xdist
+, pytestCheckHook
+, pythonOlder
 , scipy
+, setuptools-scm
+, tskit
+, wheel
 }:
 
 buildPythonPackage rec {
   pname = "msprime";
-  version = "1.2.0";
-  format = "pyproject";
+  version = "1.3.0";
+  pyproject = true;
+
   disabled = pythonOlder "3.8";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-YAJa2f0w2CenKubnYLbP8HodDhabLB2hAkyw/CPkp6o=";
+    hash = "sha256-eYjGHvlJXDZ+gu/J+52AI8PbKiB6ZEXUORlTrzxCbCk=";
   };
 
-  patches = [
-    # upstream patch fixes 2 failing unittests. remove on update
-    (fetchpatch {
-      name = "python311.patch";
-      url = "https://github.com/tskit-dev/msprime/commit/639125ec942cb898cf4a80638f229e11ce393fbc.patch";
-      hash = "sha256-peli4tdu8Bv21xIa5H8SRdfjQnTMO72IPFqybmSBSO8=";
-      includes = [ "tests/test_ancestry.py" ];
-    })
-  ];
-
   nativeBuildInputs = [
     gsl
     oldest-supported-numpy
@@ -60,10 +50,12 @@ buildPythonPackage rec {
     pytest-xdist
     scipy
   ];
+
   disabledTests = [
     "tests/test_ancestry.py::TestSimulator::test_debug_logging"
     "tests/test_ancestry.py::TestSimulator::test_debug_logging_dtw"
   ];
+
   disabledTestPaths = [
     "tests/test_demography.py"
     "tests/test_algorithms.py"
@@ -86,6 +78,7 @@ buildPythonPackage rec {
   meta = with lib; {
     description = "Simulate genealogical trees and genomic sequence data using population genetic models";
     homepage = "https://github.com/tskit-dev/msprime";
+    changelog = "https://github.com/tskit-dev/msprime/blob/${version}/CHANGELOG.md";
     license = licenses.gpl3Plus;
     maintainers = with maintainers; [ alxsimon ];
   };