paup: Rename paup to paup-cli (#341265)

pkgs/by-name/pa/paup-cli/package.nix

@@ -9,7 +9,7 @@
 }:
 
 stdenvNoCC.mkDerivation {
-  pname = "paup";
+  pname = "paup-cli";
   version = "4.0a168";
 
   src = fetchurl {

pkgs/development/python-modules/dendropy/default.nix

@@ -7,12 +7,12 @@
   pythonOlder,
   nix-update-script,
   setuptools,
-  paup,
+  paup-cli,
   paupIntegration ? false,
 }:
 
 let
-  paupPath = if paupIntegration then lib.getExe paup else "NONE";
+  paupPath = if paupIntegration then lib.getExe paup-cli else "NONE";
 in
 buildPythonPackage rec {
   pname = "dendropy";

pkgs/top-level/aliases.nix

@@ -924,6 +924,7 @@ mapAliases {
   paperless-ng = paperless-ngx; # Added 2022-04-11
   partition-manager = libsForQt5.partitionmanager; # Added 2024-01-08
   patchelfStable = patchelf; # Added 2024-01-25
+  paup =  paup-cli; # Added 2024-09-11
   pcsctools = pcsc-tools; # Added 2023-12-07
   pcsxr = throw "pcsxr was removed as it has been abandoned for over a decade; please use DuckStation, Mednafen, or the RetroArch PCSX ReARMed core"; # Added 2024-08-20
   pdf4tcl = tclPackages.pdf4tcl; # Added 2024-10-02