rPackages: CRAN and BioC update

This commit is contained in:
Justin Bedo
2026-05-25 10:21:28 +10:00
parent bf309d01a0
commit c8c8e732c7
4 changed files with 20974 additions and 15047 deletions
@@ -1,6 +1,6 @@
{
"extraArgs": {
"biocVersion": "3.22"
"biocVersion": "3.23"
},
"packages": {
"AHCytoBands": {
@@ -737,8 +737,8 @@
},
"BioMartGOGeneSets": {
"name": "BioMartGOGeneSets",
"version": "0.99.11",
"sha256": "1ack8v1q0zg15gs816n9f4pwrzrpsv4va6j0r8847pw0pvavwpiq",
"version": "0.99.12",
"sha256": "11x00v18vd5ppm9asg120dmhmqamzsacy64v3kmmxfn7rhxl25b2",
"depends": ["GenomicRanges", "S4Vectors"]
},
"CENTREannotation": {
@@ -749,8 +749,8 @@
},
"CTCF": {
"name": "CTCF",
"version": "0.99.13",
"sha256": "097w2rad5fxyg2dkghz6ws93q1l7hlc6f9dnw1n30gs2bdv5hbyb",
"version": "0.99.14",
"sha256": "06nyz5758mq04hzvc7bl0ld2d173zabs9xyhva01y92b19yy8nfp",
"depends": []
},
"ChemmineDrugs": {
@@ -887,14 +887,14 @@
},
"GO_db": {
"name": "GO.db",
"version": "3.22.0",
"sha256": "1liyl1ic2d08an0h6yxllggkv9n8vyp1bfjwvqzk5ana17lzmimf",
"version": "3.23.1",
"sha256": "0ays2n3jivigpr7m3y3rba8gjyqr7g3qxdslppww0z0zzm4m808z",
"depends": ["AnnotationDbi"]
},
"GeneSummary": {
"name": "GeneSummary",
"version": "0.99.6",
"sha256": "0h6afrjb00afrcw6mwslxp7cmwfzp4qfxh0aa4f41kfjd3cymmp5",
"version": "0.99.7",
"sha256": "0pl843r230cgq0nh5pwp19zz823dwdv789kfcgdhylijx3h2ymfk",
"depends": []
},
"GenomeInfoDbData": {
@@ -1241,8 +1241,8 @@
},
"Orthology_eg_db": {
"name": "Orthology.eg.db",
"version": "3.22.0",
"sha256": "14wng7izmr7wx3yimjlvmk87vf1z3z0n88y2nghn8a2iqci1rl3s",
"version": "3.23.0",
"sha256": "0640jwylw67cw8sylmyfcqm8cak5i2bx9k925bwm0bjmayxl8yw3",
"depends": ["AnnotationDbi"]
},
"PANTHER_db": {
@@ -1673,8 +1673,8 @@
},
"UniProtKeywords": {
"name": "UniProtKeywords",
"version": "0.99.7",
"sha256": "10id2lk2mbccay7p44pk58zhkiqc58x237qr76plivgpcc8xhjzq",
"version": "0.99.8",
"sha256": "1mhbhar70acwgjmlfkfrqc2hskqvbgsaf9xlzv8ph66x6gvbyqb7",
"depends": []
},
"XtraSNPlocs_Hsapiens_dbSNP144_GRCh37": {
@@ -2093,8 +2093,8 @@
},
"excluderanges": {
"name": "excluderanges",
"version": "0.99.10",
"sha256": "0j9njpnbh731ffimr1sbvix3wsivnh9nwxg6sbrpwp8gl0pnl7r0",
"version": "0.99.11",
"sha256": "1czr9hr84hzwa7fyzm51425nphy0b9h5yfvgkij5v8qgq565w02a",
"depends": ["GenomicRanges"]
},
"fitCons_UCSC_hg19": {
@@ -2513,8 +2513,8 @@
},
"hpAnnot": {
"name": "hpAnnot",
"version": "1.1.1",
"sha256": "0bkfcj9igi7ylhf3arszqnqzaxsxvfv2gn2smzx6ymzq5a8sc0yg",
"version": "1.1.3",
"sha256": "0gnir407flzzkkljxf2brqrw2kaycl8azi0wc5yn1fhl7x5zidq1",
"depends": ["AnnotationHub"]
},
"hs25kresogen_db": {
@@ -3749,20 +3749,20 @@
},
"org_Hs_eg_db": {
"name": "org.Hs.eg.db",
"version": "3.22.0",
"sha256": "0bia1ppxnyjpw4p3rk19q1l8rrcraccpz4w69f3ja0q0im0xrgfi",
"version": "3.23.1",
"sha256": "1zlwsk1hq40xi8xd7wc974jp8gky6x7icc9788ch77glbik201j7",
"depends": ["AnnotationDbi"]
},
"org_Mm_eg_db": {
"name": "org.Mm.eg.db",
"version": "3.22.0",
"sha256": "16liabdbkfqzhna3rw1zgf777r3xm8knrbvy0181c2nsn2jkxsv3",
"version": "3.23.0",
"sha256": "0i252737v6wk0im41gnksz4qkzf286kwgfq60yqc1mfva77m8yjh",
"depends": ["AnnotationDbi"]
},
"org_Mmu_eg_db": {
"name": "org.Mmu.eg.db",
"version": "3.22.0",
"sha256": "0ga0c9635pkigmr0l9vazh3qdpyxki1y8l7mbgcp1y8sfkyjn33c",
"version": "3.23.0",
"sha256": "08l4bckvn42yjgpkcmq87c1c2z4g8cfjc9jm5ibb84v5ffjw92ij",
"depends": ["AnnotationDbi"]
},
"org_Mxanthus_db": {
@@ -3779,14 +3779,14 @@
},
"org_Pt_eg_db": {
"name": "org.Pt.eg.db",
"version": "3.22.0",
"sha256": "1i67vccx3a6zak34nwdhrbhm7hkjz9qbai9jvwrlql6z8xc6n6q0",
"version": "3.23.0",
"sha256": "1hfvrv2n9gc0h4s6ql4lv8q8qjf75c4y5p2hlplhphzi38j54vhl",
"depends": ["AnnotationDbi"]
},
"org_Rn_eg_db": {
"name": "org.Rn.eg.db",
"version": "3.22.0",
"sha256": "0vqpmbivxd1yvapa5gz9mrxlk6ivrzak55dw2sfjm8sl308rmaj4",
"version": "3.23.0",
"sha256": "1j1gs8bk1a247shhs5z41s4pk6hw4ssy7405fv5q16m5ilpwgc1g",
"depends": ["AnnotationDbi"]
},
"org_Sc_sgd_db": {
@@ -3797,14 +3797,14 @@
},
"org_Ss_eg_db": {
"name": "org.Ss.eg.db",
"version": "3.22.0",
"sha256": "03qlbkvxfmdgpl8dwx72msd9asx12izvq2vmidqfyipyr7r79cbm",
"version": "3.23.0",
"sha256": "0ijn7dfh485lww1d9bp8j40fcjr1lx8vdnlq6ydwq3ni4bifkzqp",
"depends": ["AnnotationDbi"]
},
"org_Xl_eg_db": {
"name": "org.Xl.eg.db",
"version": "3.22.0",
"sha256": "1h8jvdzhpp9d4zaaczhmg6hk32p77l63v3095ln58rhy9m18pg0f",
"version": "3.23.0",
"sha256": "1w856a5hkp9a5g41nd69xwvzaf1nmq7zqjsn7w5p1i2zsxv1i1k1",
"depends": ["AnnotationDbi"]
},
"paeg1acdf": {
@@ -5111,8 +5111,8 @@
},
"reactome_db": {
"name": "reactome.db",
"version": "1.95.0",
"sha256": "1b87byr45cmqa7jyd5fw3askmrzfhdljjp2d7jcmm88baf45mfg6",
"version": "1.96.0",
"sha256": "0b43ri3clg6ynp197vy24936n762k0f43v9m51g1lar2w4qc2zhb",
"depends": ["AnnotationDbi"]
},
"rgu34a_db": {
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