Petsc: 3.21.4 -> 3.22.4 (#386732)

pkgs/by-name/pe/petsc/package.nix

@@ -53,11 +53,11 @@ assert withMumps -> withScalapack;
 
 stdenv.mkDerivation rec {
   pname = "petsc";
-  version = "3.21.4";
+  version = "3.22.4";
 
   src = fetchzip {
     url = "https://web.cels.anl.gov/projects/petsc/download/release-snapshots/petsc-${version}.tar.gz";
-    hash = "sha256-l7v+ASBL9FLbBmBGTRWDwBihjwLe3uLz+GwXtn8u7e0=";
+    hash = "sha256-8WV1ylXytkhiNa7YpWSOIpSvzLCCjdVVe5SiGfhicas=";
   };
 
   strictDeps = true;
@@ -179,6 +179,8 @@ stdenv.mkDerivation rec {
     inherit mpiSupport;
   };
 
+  setupHook = ./setup-hook.sh;
+
   meta = with lib; {
     description = "Portable Extensible Toolkit for Scientific computation";
     homepage = "https://petsc.org/release/";

pkgs/by-name/pe/petsc/setup-hook.sh

@@ -0,0 +1 @@
+export PETSC_DIR=@out@

pkgs/by-name/pf/pflotran/package.nix

@@ -2,13 +2,14 @@
   stdenv,
   lib,
   fetchFromBitbucket,
+  fetchzip,
   gfortran,
   mpi,
   petsc,
   blas,
   lapack,
   parmetis,
-  hdf5,
+  hdf5-fortran-mpi,
   mpiCheckPhaseHook,
   python3,
 }:
@@ -29,10 +30,18 @@ stdenv.mkDerivation (finalAttrs: {
   nativeBuildInputs = [ gfortran ];
 
   buildInputs = [
-    petsc
+    # upstream petsc has lots of fortran api change since 3.22.*
+    # will keep using old petsc-3.21.4 until pflotran support latest petsc
+    (petsc.overrideAttrs rec {
+      version = "3.21.4";
+      src = fetchzip {
+        url = "https://web.cels.anl.gov/projects/petsc/download/release-snapshots/petsc-${version}.tar.gz";
+        hash = "sha256-l7v+ASBL9FLbBmBGTRWDwBihjwLe3uLz+GwXtn8u7e0=";
+      };
+    })
     blas
     lapack
-    hdf5
+    hdf5-fortran-mpi
     parmetis
   ];
 
@@ -50,15 +59,10 @@ stdenv.mkDerivation (finalAttrs: {
   */
   preConfigure = ''
     substituteInPlace src/pflotran/makefile \
-      --subst-var-by "HDF5_FORTRAN_LIBS" "${lib.getLib hdf5}/lib" \
-      --subst-var-by "HDF5_FORTRAN_INCLUDE" "${lib.getDev hdf5}/include"
+      --subst-var-by "HDF5_FORTRAN_LIBS" "${lib.getLib hdf5-fortran-mpi}/lib" \
+      --subst-var-by "HDF5_FORTRAN_INCLUDE" "${lib.getDev hdf5-fortran-mpi}/include"
   '';
 
-  configureFlags = [
-    "--with-petsc-dir=${petsc}"
-    "--with-petsc-arch=linux-gnu-c-release"
-  ];
-
   meta = with lib; {
     description = "Parallel, multi-physics simulation code for subsurface flow and transport";
     homepage = "https://pflotran.org/";