python312Packages.spglib: cleanup (#392679)

pkgs/development/python-modules/spglib/default.nix

@@ -1,18 +1,18 @@
 {
   lib,
   buildPythonPackage,
-  fetchPypi,
+  fetchFromGitHub,
+  pythonOlder,
 
   # build-system
   scikit-build-core,
+  numpy,
   cmake,
-  pathspec,
   ninja,
-  pyproject-metadata,
   setuptools-scm,
 
   # dependencies
-  numpy,
+  typing-extensions,
 
   # tests
   pytestCheckHook,
@@ -22,31 +22,32 @@
 buildPythonPackage rec {
   pname = "spglib";
   version = "2.6.0";
-  format = "pyproject";
+  pyproject = true;
 
-  src = fetchPypi {
-    inherit pname version;
-    hash = "sha256-1m7aK6AKHhT9luycO02/irD7PxJGQ+NXhcce5FW0COs=";
+  src = fetchFromGitHub {
+    owner = "spglib";
+    repo = "spglib";
+    tag = "v${version}";
+    hash = "sha256-rmQYFFfpyUhT9pfQZk1fN5tZWTg40wwtszhPhiZpXs4=";
   };
 
-  nativeBuildInputs = [
+  build-system = [
     scikit-build-core
+    numpy
     cmake
-    pathspec
     ninja
-    pyproject-metadata
     setuptools-scm
   ];
 
   dontUseCmakeConfigure = true;
 
-  postPatch = ''
-    # relax v2 constrain in [build-system] intended for binary backward compat
-    substituteInPlace pyproject.toml \
-      --replace-fail "numpy~=2.0" "numpy"
-  '';
-
-  propagatedBuildInputs = [ numpy ];
+  dependencies =
+    [
+      numpy
+    ]
+    ++ lib.optionals (pythonOlder "3.13") [
+      typing-extensions
+    ];
 
   nativeCheckInputs = [
     pytestCheckHook
@@ -55,11 +56,11 @@ buildPythonPackage rec {
 
   pythonImportsCheck = [ "spglib" ];
 
-  meta = with lib; {
+  meta = {
     description = "Python bindings for C library for finding and handling crystal symmetries";
     homepage = "https://spglib.github.io/spglib/";
     changelog = "https://github.com/spglib/spglib/raw/v${version}/ChangeLog";
-    license = licenses.bsd3;
-    maintainers = with maintainers; [ psyanticy ];
+    license = lib.licenses.bsd3;
+    maintainers = with lib.maintainers; [ psyanticy ];
   };
 }