treewide: migrate to by-name (#448721)

pkgs/top-level/all-packages.nix

@@ -1081,8 +1081,6 @@ with pkgs;
 
   makehuman = libsForQt5.callPackage ../applications/misc/makehuman { };
 
-  mkosi = callPackage ../tools/virtualization/mkosi { };
-
   mkosi-full = mkosi.override { withQemu = true; };
 
   mpy-utils = python3Packages.callPackage ../tools/misc/mpy-utils { };
@@ -1629,8 +1627,6 @@ with pkgs;
 
   inherit (cue) writeCueValidator;
 
-  cyclonedx-gomod = callPackage ../tools/security/cyclonedx-gomod { };
-
   dazel = python3Packages.callPackage ../development/tools/dazel { };
 
   detect-secrets = with python3Packages; toPythonApplication detect-secrets;
@@ -2707,8 +2703,6 @@ with pkgs;
     callPackage ../servers/search/elasticsearch/plugins.nix { }
   );
 
-  embree = callPackage ../development/libraries/embree { };
-
   emborg = python3Packages.callPackage ../development/python-modules/emborg { };
 
   encfs = callPackage ../tools/filesystems/encfs {
@@ -3003,8 +2997,6 @@ with pkgs;
 
   gruut-ipa = with python3.pkgs; toPythonApplication gruut-ipa;
 
-  gsmlib = callPackage ../development/libraries/gsmlib { };
-
   gssdp = callPackage ../development/libraries/gssdp { };
 
   gssdp_1_6 = callPackage ../development/libraries/gssdp/1.6.nix { };
@@ -3062,8 +3054,6 @@ with pkgs;
     threadsafe = true;
   };
 
-  headscale = callPackage ../servers/headscale { };
-
   highlight = callPackage ../tools/text/highlight {
     lua = lua5;
   };
@@ -3226,8 +3216,6 @@ with pkgs;
 
   ksmoothdock = libsForQt5.callPackage ../applications/misc/ksmoothdock { };
 
-  libcoap = callPackage ../applications/networking/libcoap { };
-
   libcryptui = callPackage ../development/libraries/libcryptui {
     gtk3 = if stdenv.hostPlatform.isDarwin then gtk3-x11 else gtk3;
   };
@@ -3258,8 +3246,6 @@ with pkgs;
     lua = lua5_2_compat;
   };
 
-  kdbg = callPackage ../development/tools/misc/kdbg { };
-
   kristall = libsForQt5.callPackage ../applications/networking/browsers/kristall { };
 
   lagrange-tui = lagrange.override { enableTUI = true; };
@@ -3562,8 +3548,6 @@ with pkgs;
     nodejs = nodejs_20;
   };
 
-  networkmanager = callPackage ../tools/networking/networkmanager { };
-
   libnma-gtk4 = libnma.override { withGtk4 = true; };
 
   inherit (callPackages ../servers/nextcloud { })
@@ -3646,8 +3630,6 @@ with pkgs;
 
   ome_zarr = with python3Packages; toPythonApplication ome-zarr;
 
-  onlykey = callPackage ../tools/security/onlykey { };
-
   ophcrack-cli = ophcrack.override { enableGui = false; };
 
   open-interpreter = with python3Packages; toPythonApplication open-interpreter;
@@ -3764,8 +3746,6 @@ with pkgs;
 
   paperwork = callPackage ../applications/office/paperwork/paperwork-gtk.nix { };
 
-  parcellite = callPackage ../tools/misc/parcellite { };
-
   patchutils = callPackage ../tools/text/patchutils { };
 
   patchutils_0_3_3 = callPackage ../tools/text/patchutils/0.3.3.nix { };
@@ -3921,8 +3901,6 @@ with pkgs;
 
   qlcplus = libsForQt5.callPackage ../applications/misc/qlcplus { };
 
-  qdigidoc = callPackage ../tools/security/qdigidoc { };
-
   qjournalctl = libsForQt5.callPackage ../applications/system/qjournalctl { };
 
   qjoypad = libsForQt5.callPackage ../tools/misc/qjoypad { };
@@ -4203,7 +4181,6 @@ with pkgs;
 
   trytond = with python3Packages; toPythonApplication trytond;
 
-  ttfautohint = callPackage ../tools/misc/ttfautohint { };
   ttfautohint-nox = ttfautohint.override { enableGUI = false; };
 
   twilight = callPackage ../tools/graphics/twilight {
@@ -4229,8 +4206,6 @@ with pkgs;
 
   vacuum = libsForQt5.callPackage ../applications/networking/instant-messengers/vacuum { };
 
-  vampire = callPackage ../applications/science/logic/vampire { };
-
   vcmi = libsForQt5.callPackage ../games/vcmi { };
 
   video2midi = callPackage ../tools/audio/video2midi {
@@ -4306,8 +4281,6 @@ with pkgs;
 
   ufmt = with python3Packages; toPythonApplication ufmt;
 
-  uim = callPackage ../tools/inputmethods/uim { };
-
   unbound-with-systemd = unbound.override {
     withSystemd = true;
   };
@@ -4446,8 +4419,6 @@ with pkgs;
   };
   bashInteractiveFHS = bashFHS;
 
-  carapace = callPackage ../shells/carapace { };
-
   wrapFish = callPackage ../shells/fish/wrapper.nix { };
 
   fishPlugins = recurseIntoAttrs (callPackage ../shells/fish/plugins { });
@@ -5092,8 +5063,6 @@ with pkgs;
   haxePackages = recurseIntoAttrs (callPackage ./haxe-packages.nix { });
   inherit (haxePackages) hxcpp;
 
-  falcon = callPackage ../development/interpreters/falcon { };
-
   dotnetPackages = recurseIntoAttrs (callPackage ./dotnet-packages.nix { });
 
   gopro-tool = callPackage ../by-name/go/gopro-tool/package.nix {
@@ -5349,8 +5318,6 @@ with pkgs;
     jdk_headless = openjdk8_headless; # TODO: remove override https://github.com/NixOS/nixpkgs/pull/89731
   };
 
-  mitscheme = callPackage ../development/compilers/mit-scheme { };
-
   mitschemeX11 = mitscheme.override {
     enableX11 = true;
   };
@@ -6669,8 +6636,6 @@ with pkgs;
     );
   };
 
-  fswatch = callPackage ../development/tools/misc/fswatch { };
-
   gede = libsForQt5.callPackage ../development/tools/misc/gede { };
 
   gdbgui = python3Packages.callPackage ../development/tools/misc/gdbgui { };
@@ -6959,8 +6924,6 @@ with pkgs;
 
   snowman = qt5.callPackage ../development/tools/analysis/snowman { };
 
-  sparse = callPackage ../development/tools/analysis/sparse { };
-
   speedtest-cli = with python3Packages; toPythonApplication speedtest-cli;
 
   splint = callPackage ../development/tools/analysis/splint {
@@ -7230,8 +7193,6 @@ with pkgs;
 
   makeDBusConf = callPackage ../development/libraries/dbus/make-dbus-conf.nix { };
 
-  dee = callPackage ../development/libraries/dee { };
-
   draco = callPackage ../development/libraries/draco {
     tinygltf = callPackage ../development/libraries/draco/tinygltf.nix { };
   };
@@ -7388,8 +7349,6 @@ with pkgs;
 
   geoip = callPackage ../development/libraries/geoip { };
 
-  geos = callPackage ../development/libraries/geos { };
-
   gettext = callPackage ../development/libraries/gettext { };
 
   gdalMinimal = gdal.override {
@@ -8174,8 +8133,6 @@ with pkgs;
   libxmlxx = callPackage ../development/libraries/libxmlxx { };
   libxmlxx3 = callPackage ../development/libraries/libxmlxx/v3.nix { };
 
-  libxslt = callPackage ../development/libraries/libxslt { };
-
   libwpe = callPackage ../development/libraries/libwpe { };
 
   libwpe-fdo = callPackage ../development/libraries/libwpe/fdo.nix { };
@@ -8700,8 +8657,6 @@ with pkgs;
 
   rshell = python3.pkgs.callPackage ../development/embedded/rshell { };
 
-  schroedinger = callPackage ../development/libraries/schroedinger { };
-
   SDL = SDL_compat;
   SDL2 = sdl2-compat;
 
@@ -9412,12 +9367,9 @@ with pkgs;
 
   diod = callPackage ../servers/diod { lua = lua5_1; };
 
-  directx-shader-compiler = callPackage ../tools/graphics/directx-shader-compiler { };
-
   dodgy = with python3Packages; toPythonApplication dodgy;
 
   etcd = etcd_3_5;
-  etcd_3_4 = callPackage ../servers/etcd/3_4 { };
   etcd_3_5 = callPackage ../servers/etcd/3_5 { };
 
   prosody = callPackage ../servers/xmpp/prosody {
@@ -9631,8 +9583,6 @@ with pkgs;
     ];
   };
 
-  libmodsecurity = callPackage ../tools/security/libmodsecurity { };
-
   nsd = callPackage ../servers/dns/nsd (config.nsd or { });
 
   nsdiff = perlPackages.nsdiff;
@@ -10569,8 +10519,6 @@ with pkgs;
     withLastlog = false;
   };
 
-  v4l-utils = callPackage ../os-specific/linux/v4l-utils { };
-
   windows = recurseIntoAttrs (callPackages ../os-specific/windows { });
 
   cygwin = recurseIntoAttrs (callPackages ../os-specific/cygwin { });
@@ -10652,8 +10600,6 @@ with pkgs;
 
   moeli = eduli;
 
-  emojione = callPackage ../data/fonts/emojione { };
-
   flat-remix-icon-theme = callPackage ../data/icons/flat-remix-icon-theme {
     inherit (plasma5Packages) breeze-icons;
   };
@@ -11142,8 +11088,6 @@ with pkgs;
 
   elf-dissector = libsForQt5.callPackage ../applications/misc/elf-dissector { };
 
-  elinks = callPackage ../applications/networking/browsers/elinks { };
-
   inherit (recurseIntoAttrs (callPackage ../applications/editors/emacs { }))
     emacs30
     emacs30-gtk3
@@ -11264,8 +11208,6 @@ with pkgs;
     libpcap = libpcap.override { withBluez = stdenv.hostPlatform.isLinux; };
   };
 
-  fclones = callPackage ../tools/misc/fclones { };
-
   buildMozillaMach =
     opts: callPackage (import ../build-support/build-mozilla-mach/default.nix opts) { };
 
@@ -11947,8 +11889,6 @@ with pkgs;
     shelfMultiBand = callPackage ../applications/audio/magnetophonDSP/shelfMultiBand { };
   };
 
-  mandelbulber = callPackage ../applications/graphics/mandelbulber { };
-
   mastodon-bot = nodePackages.mastodon-bot;
 
   matrix-commander =
@@ -12115,8 +12055,6 @@ with pkgs;
 
   mumble_overlay = (callPackages ../applications/networking/mumble { }).overlay;
 
-  mup = callPackage ../applications/audio/mup { };
-
   musescore = qt6.callPackage ../applications/audio/musescore { };
 
   mwic = callPackage ../applications/misc/mwic {
@@ -12953,8 +12891,6 @@ with pkgs;
     ocamlPackages = ocaml-ng.ocamlPackages_4_14;
   };
 
-  virt-manager = callPackage ../applications/virtualization/virt-manager { };
-
   virtualbox = libsForQt5.callPackage ../applications/virtualization/virtualbox {
     stdenv = stdenv_32bit;
 
@@ -13121,8 +13057,6 @@ with pkgs;
     xwaylandSupport = false;
   };
 
-  whalebird = callPackage ../applications/misc/whalebird { };
-
   inherit (windowmaker) dockapps;
 
   wofi-pass = callPackage ../../pkgs/tools/security/pass/wofi-pass.nix { };
@@ -13135,8 +13069,6 @@ with pkgs;
 
   wsjtx = qt5.callPackage ../applications/radio/wsjtx { };
 
-  x2goclient = callPackage ../applications/networking/remote/x2goclient { };
-
   x2gokdriveclient = libsForQt5.callPackage ../applications/networking/remote/x2gokdriveclient { };
 
   x32edit = callPackage ../applications/audio/midas/x32edit.nix { };
@@ -13242,8 +13174,6 @@ with pkgs;
 
   zeroc-ice-cpp11 = zeroc-ice.override { cpp11 = true; };
 
-  zexy = callPackage ../applications/audio/pd-plugins/zexy { };
-
   zed-editor-fhs = zed-editor.fhs;
 
   zgv = callPackage ../applications/graphics/zgv {
@@ -14247,8 +14177,6 @@ with pkgs;
     coq
     ;
 
-  coq-kernel = callPackage ../applications/editors/jupyter-kernels/coq { };
-
   cubicle = callPackage ../applications/science/logic/cubicle {
     ocamlPackages = ocaml-ng.ocamlPackages_4_14;
   };
@@ -14376,8 +14304,6 @@ with pkgs;
     withNgshared = false;
   };
 
-  openems = callPackage ../applications/science/electronics/openems { };
-
   xyce-parallel = callPackage ../by-name/xy/xyce/package.nix {
     withMPI = true;
     trilinos = trilinos-mpi;