treewide: use pytest-cov-stub (#417430)

pkgs/applications/networking/p2p/deluge/default.nix

@@ -68,7 +68,7 @@ let
       nativeCheckInputs = with pypkgs; [
         pytestCheckHook
         pytest-twisted
-        pytest-cov
+        pytest-cov-stub
         mock
         mccabe
         pylint

pkgs/by-name/be/bepasty/package.nix

@@ -57,7 +57,7 @@ bepastyPython.pkgs.buildPythonPackage rec {
     build
     flake8
     pytestCheckHook
-    pytest-cov
+    pytest-cov-stub
     selenium
     tox
     twine

pkgs/by-name/bu/buku/package.nix

@@ -40,14 +40,14 @@ buildPythonApplication rec {
 
   nativeCheckInputs = [
     hypothesis
-    pytest
+    pytestCheckHook
     pytest-recording
     pyyaml
     mypy-extensions
     click
     pylint
     flake8
-    pytest-cov
+    pytest-cov-stub
     pyyaml
   ];
 

pkgs/by-name/ca/canaille/package.nix

@@ -58,7 +58,7 @@ python.pkgs.buildPythonApplication rec {
       coverage
       flask-webtest
       pyquery
-      pytest-cov
+      pytest-cov-stub
       pytest-httpserver
       pytest-lazy-fixtures
       pytest-smtpd

pkgs/by-name/cl/cloudsmith-cli/package.nix

@@ -51,7 +51,7 @@ python3.pkgs.buildPythonApplication rec {
 
   nativeCheckInputs = with python3.pkgs; [
     pytestCheckHook
-    pytest-cov
+    pytest-cov-stub
   ];
 
   checkInputs = with python3.pkgs; [

pkgs/by-name/fa/fastcov/package.nix

@@ -32,7 +32,7 @@ python3Packages.buildPythonPackage rec {
   dontUseCmakeConfigure = true; # cmake is used for testing
 
   nativeCheckInputs = with python3Packages; [
-    pytest
+    pytestCheckHook
     pytest-cov-stub
   ];
 

pkgs/by-name/gi/git-pw/package.nix

@@ -36,7 +36,7 @@ python3.pkgs.buildPythonApplication rec {
 
   nativeCheckInputs = with python3.pkgs; [
     pytest-cov-stub
-    pytest
+    pytestCheckHook
     git
   ];
 

pkgs/by-name/gi/gitfs/package.nix

@@ -27,8 +27,8 @@ python3Packages.buildPythonApplication rec {
   '';
 
   nativeCheckInputs = with python3Packages; [
-    pytest
-    pytest-cov
+    pytestCheckHook
+    pytest-cov-stub
     mock
   ];
   propagatedBuildInputs = with python3Packages; [
@@ -38,8 +38,7 @@ python3Packages.buildPythonApplication rec {
     six
   ];
 
-  checkPhase = "py.test";
-  doCheck = false;
+  pythonImportsCheck = [ "gitfs" ];
 
   meta = {
     description = "FUSE filesystem that fully integrates with git";
@@ -53,5 +52,8 @@ python3Packages.buildPythonApplication rec {
     platforms = lib.platforms.unix;
     maintainers = [ lib.maintainers.robbinch ];
     mainProgram = "gitfs";
+    # requires <=python39, otherwise you get this at runtime:
+    # AttributeError: module 'collections' has no attribute 'MutableMapping'
+    broken = true;
   };
 }

pkgs/by-name/me/memray/package.nix

@@ -44,7 +44,7 @@ python3Packages.buildPythonApplication rec {
     with python3Packages;
     [
       ipython
-      pytest-cov # fix Unknown pytest.mark.no_cover
+      pytest-cov-stub # fix Unknown pytest.mark.no_cover
       pytest-textual-snapshot
       pytestCheckHook
     ]

pkgs/by-name/pa/patroni/package.nix

@@ -44,7 +44,7 @@ python3Packages.buildPythonApplication rec {
     flake8
     mock
     pytestCheckHook
-    pytest-cov
+    pytest-cov-stub
     requests
     versionCheckHook
     writableTmpDirAsHomeHook

pkgs/by-name/re/rexi/package.nix

@@ -27,9 +27,9 @@ python3Packages.buildPythonApplication rec {
   ];
 
   nativeCheckInputs = with python3Packages; [
-    pytest
+    pytestCheckHook
     pytest-asyncio
-    pytest-cov
+    pytest-cov-stub
   ];
 
   pythonRelaxDeps = [

pkgs/by-name/so/solaar/package.nix

@@ -58,7 +58,7 @@ python3Packages.buildPythonApplication rec {
   nativeCheckInputs = with python3Packages; [
     pytestCheckHook
     pytest-mock
-    pytest-cov
+    pytest-cov-stub
   ];
 
   # the -cli symlink is just to maintain compabilility with older versions where

pkgs/by-name/un/unblob/package.nix

@@ -116,7 +116,7 @@ python3.pkgs.buildPythonApplication rec {
     with python3.pkgs;
     [
       pytestCheckHook
-      pytest-cov
+      pytest-cov # cannot use stub
       versionCheckHook
     ]
     ++ runtimeDeps;

pkgs/by-name/vi/vim-vint/package.nix

@@ -1,7 +1,7 @@
 {
   lib,
   python3Packages,
-  fetchPypi,
+  fetchFromGitHub,
 }:
 
 with python3Packages;
@@ -10,17 +10,19 @@ buildPythonApplication rec {
   pname = "vim-vint";
   version = "0.3.21";
 
-  src = fetchPypi {
-    inherit pname version;
-    sha256 = "15qdh8fby9xgfjxidcfv1xmrqqrxxapky7zmyn46qx1abhp9piax";
+  src = fetchFromGitHub {
+    owner = "Vimjas";
+    repo = "vint";
+    tag = "v${version}";
+    hash = "sha256-A0yXDkB/b9kEEXSoLeqVdmdm4p2PYL2QHqbF4FgAn30=";
   };
 
   # For python 3.5 > version > 2.7 , a nested dependency (pythonPackages.hypothesis) fails.
   disabled = !pythonAtLeast "3.5";
 
   nativeCheckInputs = [
-    pytest
-    pytest-cov
+    pytestCheckHook
+    pytest-cov-stub
   ];
   propagatedBuildInputs = [
     ansicolor
@@ -29,10 +31,13 @@ buildPythonApplication rec {
     setuptools
   ];
 
-  # Unpin test dependency versions. This is fixed in master but not yet released.
   preCheck = ''
-    sed -i 's/==.*//g' test-requirements.txt
-    sed -i 's/mock == 1.0.1/mock/g' setup.py
+    substituteInPlace \
+      test/acceptance/test_cli.py \
+      test/acceptance/test_cli_vital.py \
+      --replace-fail \
+        "cmd = ['bin/vint'" \
+        "cmd = ['$out/bin/vint'"
   '';
 
   meta = with lib; {

pkgs/by-name/vu/vulnix/package.nix

@@ -28,8 +28,8 @@ python3Packages.buildPythonApplication rec {
 
   nativeCheckInputs = with python3Packages; [
     freezegun
-    pytest
-    pytest-cov
+    pytestCheckHook
+    pytest-cov-stub
   ];
 
   propagatedBuildInputs =
@@ -48,7 +48,7 @@ python3Packages.buildPythonApplication rec {
 
   postBuild = "make -C doc";
 
-  checkPhase = "py.test src/vulnix";
+  pytestFlagsArray = [ "src/vulnix" ];
 
   postInstall = ''
     install -D -t $doc/share/doc/vulnix README.rst CHANGES.rst

pkgs/by-name/zu/zulip-term/package.nix

@@ -67,7 +67,7 @@ buildPythonApplication rec {
     ]
     ++ (with python3.pkgs; [
       pytestCheckHook
-      pytest-cov
+      pytest-cov-stub
       pytest-mock
     ]);
 

pkgs/development/python-modules/colcon-mixin/default.nix

@@ -3,7 +3,7 @@
   buildPythonPackage,
   fetchFromGitHub,
   colcon,
-  pytest-cov,
+  pytest-cov-stub,
   pytestCheckHook,
   setuptools,
   scspell,
@@ -29,7 +29,7 @@ buildPythonPackage rec {
   ];
 
   nativeCheckInputs = [
-    pytest-cov
+    pytest-cov-stub
     pytestCheckHook
     scspell
     writableTmpDirAsHomeHook

pkgs/development/python-modules/colcon-ros-domain-id-coordinator/default.nix

@@ -4,7 +4,7 @@
   colcon,
   fetchFromGitHub,
   pytestCheckHook,
-  pytest-cov,
+  pytest-cov-stub,
   pytest-repeat,
   pytest-rerunfailures,
   scspell,
@@ -30,7 +30,7 @@ buildPythonPackage {
 
   nativeCheckInputs = [
     pytestCheckHook
-    pytest-cov
+    pytest-cov-stub
     pytest-repeat
     pytest-rerunfailures
     scspell

pkgs/development/python-modules/deltalake/default.nix

@@ -12,7 +12,7 @@
   polars,
   pytestCheckHook,
   pytest-benchmark,
-  pytest-cov,
+  pytest-cov-stub,
   pytest-mock,
   pandas,
   azure-storage-blob,
@@ -64,7 +64,7 @@ buildPythonPackage rec {
     pandas
     polars
     pytest-benchmark
-    pytest-cov
+    pytest-cov-stub
     pytest-mock
     azure-storage-blob
   ];

pkgs/development/python-modules/dramatiq-abort/default.nix

@@ -4,7 +4,7 @@
   fetchFromGitHub,
   gevent,
   pytestCheckHook,
-  pytest-cov,
+  pytest-cov-stub,
   dramatiq,
   redis,
   setuptools,
@@ -37,7 +37,7 @@ buildPythonPackage rec {
   nativeCheckInputs = [
     redis
     pytestCheckHook
-    pytest-cov
+    pytest-cov-stub
   ];
 
   pythonImportsCheck = [ "dramatiq_abort" ];

pkgs/development/python-modules/haystack-ai/default.nix

@@ -42,7 +42,7 @@
   pylint,
   pytest,
   pytest-asyncio,
-  pytest-cov-stub,
+  pytest-cov,
   # , pytest-custom-exit-code
   python-multipart,
   reno,
@@ -167,7 +167,7 @@ buildPythonPackage rec {
       pylint
       pytest
       pytest-asyncio
-      pytest-cov-stub
+      pytest-cov
       # pytest-custom-exit-code
       python-multipart
       reno

pkgs/development/python-modules/iocapture/default.nix

@@ -3,7 +3,7 @@
   buildPythonPackage,
   fetchPypi,
   flexmock,
-  pytest,
+  pytestCheckHook,
   pytest-cov-stub,
   six,
 }:
@@ -20,7 +20,7 @@ buildPythonPackage rec {
 
   nativeCheckInputs = [
     flexmock
-    pytest
+    pytestCheckHook
     pytest-cov-stub
     six
   ];

pkgs/development/python-modules/langchain-perplexity/default.nix

@@ -13,7 +13,7 @@
   # tests
   langchain-tests,
   pytest-asyncio,
-  pytest-cov,
+  pytest-cov-stub,
   pytest-mock,
   pytestCheckHook,
 
@@ -51,7 +51,7 @@ buildPythonPackage rec {
   nativeCheckInputs = [
     langchain-tests
     pytest-asyncio
-    pytest-cov
+    pytest-cov-stub
     pytest-mock
     pytestCheckHook
   ];

pkgs/development/python-modules/nonbloat-db/default.nix

@@ -14,7 +14,7 @@
   # tests
   pytestCheckHook,
   pytest-asyncio,
-  pytest-cov,
+  pytest-cov-stub,
   pytest-mock,
   pytest-randomly,
   faker,
@@ -45,7 +45,7 @@ buildPythonPackage rec {
   nativeCheckInputs = [
     pytestCheckHook
     pytest-asyncio
-    pytest-cov
+    pytest-cov-stub
     pytest-mock
     pytest-randomly
     faker

pkgs/development/python-modules/pdfplumber/default.nix

@@ -11,7 +11,7 @@
   pdfminer-six,
   pillow,
   pypdfium2,
-  pytest-cov,
+  pytest-cov-stub,
   pytest-parallel,
   pytestCheckHook,
   types-pillow,
@@ -44,7 +44,7 @@ buildPythonPackage rec {
     nbexec
     pandas
     pandas-stubs
-    pytest-cov
+    pytest-cov-stub
     pytest-parallel
     pytestCheckHook
     types-pillow

pkgs/development/python-modules/plaster/default.nix

@@ -1,7 +1,8 @@
 {
+  lib,
   buildPythonPackage,
   fetchPypi,
-  pytest,
+  pytestCheckHook,
   pytest-cov-stub,
 }:
 
@@ -15,12 +16,15 @@ buildPythonPackage rec {
     hash = "sha256-+L78VL+MEUfBCrQCl+yEwmdvotTqXW9STZQ2qAB075g=";
   };
 
-  checkPhase = ''
-    py.test
-  '';
-
   nativeCheckInputs = [
-    pytest
+    pytestCheckHook
     pytest-cov-stub
   ];
+
+  meta = {
+    description = "Loader interface around multiple config file formats";
+    homepage = "https://pypi.org/project/plaster/";
+    license = lib.licenses.mit;
+    maintainers = with lib.maintainers; [ ];
+  };
 }

pkgs/development/python-modules/polars/default.nix

@@ -9,7 +9,7 @@
   pkgs, # zstd hidden by python3Packages.zstd
   pytestCheckHook,
   pytest-codspeed ? null, # Not in Nixpkgs
-  pytest-cov,
+  pytest-cov-stub,
   pytest-xdist,
   pytest-benchmark,
   rustc,
@@ -229,7 +229,7 @@ buildPythonPackage rec {
     nativeCheckInputs = [
       pytestCheckHook
       pytest-codspeed
-      pytest-cov
+      pytest-cov-stub
       pytest-xdist
       pytest-benchmark
     ];

pkgs/development/python-modules/property-manager/default.nix

@@ -5,7 +5,7 @@
   humanfriendly,
   verboselogs,
   coloredlogs,
-  pytest,
+  pytestCheckHook,
   pytest-cov-stub,
 }:
 
@@ -27,7 +27,7 @@ buildPythonPackage rec {
     verboselogs
   ];
   nativeCheckInputs = [
-    pytest
+    pytestCheckHook
     pytest-cov-stub
   ];
 

pkgs/development/python-modules/pygerber/default.nix

@@ -26,7 +26,6 @@
   dulwich,
   tzlocal,
   pytest-xdist,
-  pytest-cov,
   pytest-lsp,
   pytest-asyncio,
   pytest-mock,
@@ -77,7 +76,6 @@ buildPythonPackage rec {
 
   nativeCheckInputs = [
     pytest-asyncio
-    pytest-cov
     pytest-xdist
     pytest-lsp
     pytest-mock
@@ -94,6 +92,8 @@ buildPythonPackage rec {
     "test/gerberx3/test_language_server/tests.py"
   ];
 
+  pytestFlagsArray = [ "--override-ini required_plugins=''" ];
+
   pythonImportsCheck = [ "pygerber" ];
 
   meta = {

pkgs/development/python-modules/pyscaffold/default.nix

@@ -23,7 +23,7 @@
   certifi,
   flake8,
   pytest,
-  pytest-cov-stub,
+  pytest-cov,
   pytest-randomly,
   pytest-xdist,
   sphinx,
@@ -80,7 +80,7 @@ buildPythonPackage rec {
       flake8
       pre-commit
       pytest
-      pytest-cov-stub
+      pytest-cov
       pytest-randomly
       pytest-xdist
       setuptools

pkgs/development/python-modules/pyscaffoldext-cookiecutter/default.nix

@@ -11,7 +11,7 @@
   configupdater,
   pre-commit,
   pytest,
-  pytest-cov-stub,
+  pytest-cov,
   pytest-xdist,
   tox,
   virtualenv,
@@ -44,7 +44,7 @@ buildPythonPackage rec {
       configupdater
       pre-commit
       pytest
-      pytest-cov-stub
+      pytest-cov
       pytest-xdist
       setuptools-scm
       tox

pkgs/development/python-modules/pyscaffoldext-custom-extension/default.nix

@@ -11,7 +11,7 @@
   pyscaffold,
   pre-commit,
   pytest,
-  pytest-cov-stub,
+  pytest-cov,
   pytest-xdist,
   tox,
   virtualenv,
@@ -45,7 +45,7 @@ buildPythonPackage rec {
       configupdater
       pre-commit
       pytest
-      pytest-cov-stub
+      pytest-cov
       pytest-xdist
       setuptools-scm
       tox

pkgs/development/python-modules/pyscaffoldext-django/default.nix

@@ -10,7 +10,7 @@
   configupdater,
   pre-commit,
   pytest,
-  pytest-cov-stub,
+  pytest-cov,
   pytest-xdist,
   tox,
   virtualenv,
@@ -42,7 +42,7 @@ buildPythonPackage rec {
       configupdater
       pre-commit
       pytest
-      pytest-cov-stub
+      pytest-cov
       pytest-xdist
       setuptools-scm
       tox

pkgs/development/python-modules/pyscaffoldext-dsproject/default.nix

@@ -11,7 +11,7 @@
   configupdater,
   pre-commit,
   pytest,
-  pytest-cov-stub,
+  pytest-cov,
   pytest-xdist,
   tox,
   virtualenv,
@@ -44,7 +44,7 @@ buildPythonPackage rec {
       configupdater
       pre-commit
       pytest
-      pytest-cov-stub
+      pytest-cov
       pytest-xdist
       setuptools-scm
       tox

pkgs/development/python-modules/pyscaffoldext-markdown/default.nix

@@ -11,7 +11,7 @@
   configupdater,
   pre-commit,
   pytest,
-  pytest-cov-stub,
+  pytest-cov,
   pytest-xdist,
   tox,
   twine,
@@ -46,7 +46,7 @@ buildPythonPackage rec {
       configupdater
       pre-commit
       pytest
-      pytest-cov-stub
+      pytest-cov
       pytest-xdist
       setuptools-scm
       tox

pkgs/development/python-modules/pyscaffoldext-travis/default.nix

@@ -10,7 +10,7 @@
   configupdater,
   pre-commit,
   pytest,
-  pytest-cov-stub,
+  pytest-cov,
   pytest-xdist,
   tox,
   virtualenv,
@@ -42,7 +42,7 @@ buildPythonPackage rec {
       configupdater
       pre-commit
       pytest
-      pytest-cov-stub
+      pytest-cov
       pytest-xdist
       setuptools-scm
       tox

pkgs/development/python-modules/reikna/default.nix

@@ -4,7 +4,7 @@
   buildPythonPackage,
   sphinx,
   pytest-cov-stub,
-  pytest,
+  pytestCheckHook,
   mako,
   numpy,
   funcsigs,
@@ -27,7 +27,7 @@ buildPythonPackage rec {
   nativeCheckInputs = [
     sphinx
     pytest-cov-stub
-    pytest
+    pytestCheckHook
   ];
 
   propagatedBuildInputs =
@@ -39,10 +39,6 @@ buildPythonPackage rec {
     ++ lib.optional withCuda pycuda
     ++ lib.optional withOpenCL pyopencl;
 
-  checkPhase = ''
-    py.test
-  '';
-
   # Requires device
   doCheck = false;
 

pkgs/development/python-modules/sanic-ext/default.nix

@@ -18,7 +18,7 @@
   msgspec,
   pydantic,
   pytest,
-  pytest-cov,
+  pytest-cov-stub,
   pytest-asyncio,
   tox,
   jinja2,
@@ -51,7 +51,7 @@ buildPythonPackage rec {
     msgspec
     pydantic
     pytest
-    pytest-cov
+    pytest-cov-stub
     pytest-asyncio
     tox
     jinja2

pkgs/development/python-modules/sklearn-compat/default.nix

@@ -6,7 +6,7 @@
   scikit-learn,
   pandas,
   pytestCheckHook,
-  pytest-cov,
+  pytest-cov-stub,
   pytest-xdist,
   pytz,
 }:
@@ -34,7 +34,7 @@ buildPythonPackage rec {
   nativeCheckInputs = [
     pandas
     pytestCheckHook
-    pytest-cov
+    pytest-cov-stub
     pytest-xdist
     pytz
   ];

pkgs/servers/isso/default.nix

@@ -66,14 +66,10 @@ buildPythonApplication rec {
   '';
 
   nativeCheckInputs = [
-    pytest
-    pytest-cov
+    pytestCheckHook
+    pytest-cov-stub
   ];
 
-  checkPhase = ''
-    pytest
-  '';
-
   passthru.tests = { inherit (nixosTests) isso; };
 
   meta = with lib; {

pkgs/tools/audio/beets/common.nix

@@ -145,7 +145,7 @@ python3Packages.buildPythonApplication {
     with python3Packages;
     [
       pytestCheckHook
-      pytest-cov
+      pytest-cov-stub
       mock
       rarfile
       responses