blast: 2.14.1 -> 2.17.0

pkgs/by-name/bl/blast/package.nix

@@ -9,15 +9,17 @@
   cpio,
   gawk,
   coreutils,
+  curl,
+  sqlite,
 }:
 
 stdenv.mkDerivation (finalAttrs: {
   pname = "blast";
-  version = "2.14.1";
+  version = "2.17.0";
 
   src = fetchurl {
     url = "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${finalAttrs.version}/ncbi-blast-${finalAttrs.version}+-src.tar.gz";
-    sha256 = "sha256-cSwtvfD7E8wcLU9O9d0c5LBsO1fpbf6o8j5umfWxZQ4=";
+    sha256 = "sha256-UCBXqI6ZkONOYnWL4h6kdMwK1o1qY6LjeyNyrx5eoUc=";
   };
 
   sourceRoot = "ncbi-blast-${finalAttrs.version}+-src/c++";
@@ -28,6 +30,7 @@ stdenv.mkDerivation (finalAttrs: {
     "--with-flat-makefile"
     "--without-makefile-auto-update"
     "--with-dll" # build dynamic libraries (static are default)
+    "--with-sqlite3=${sqlite.dev}"
   ];
 
   makeFlags = [ "all_projects=app/" ];
@@ -100,6 +103,7 @@ stdenv.mkDerivation (finalAttrs: {
     gawk
     zlib
     bzip2
+    sqlite
   ];
 
   strictDeps = true;
@@ -109,6 +113,9 @@ stdenv.mkDerivation (finalAttrs: {
   postInstall = ''
     substituteInPlace $out/bin/get_species_taxids.sh \
         --replace-fail "/bin/rm" "${coreutils}/bin/rm"
+
+    substituteInPlace $out/bin/update_blastdb.pl \
+        --replace-fail 'qw(/usr/local/bin /usr/bin)' 'qw(${lib.getBin curl}/bin)'
   '';
   patches = [ ./no_slash_bin.patch ];