rPackages.iscream: use pkgs.htslib without libdeflate override
now that pkgs.htslib is built with libdeflate support
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@@ -3136,19 +3136,13 @@ let
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'';
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});
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iscream =
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let
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# https://huishenlab.github.io/iscream/articles/htslib.html
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htslib-deflate = pkgs.htslib.overrideAttrs (attrs: {
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buildInputs = attrs.buildInputs ++ [ pkgs.libdeflate ];
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});
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in
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old.iscream.overrideAttrs (attrs: {
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# Rhtslib (in LinkingTo) is not needed if we provide a proper htslib
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propagatedBuildInputs =
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builtins.filter (el: el != pkgs.rPackages.Rhtslib) attrs.propagatedBuildInputs
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++ [ htslib-deflate ];
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});
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iscream = old.iscream.overrideAttrs (attrs: {
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# https://huishenlab.github.io/iscream/articles/htslib.html
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# Rhtslib (in LinkingTo) is not needed if we provide a proper htslib
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propagatedBuildInputs =
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builtins.filter (el: el != pkgs.rPackages.Rhtslib) attrs.propagatedBuildInputs
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++ [ pkgs.htslib ];
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});
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torch = old.torch.overrideAttrs (attrs: {
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preConfigure = ''
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