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python3Packages.bambi: 0.16.0 -> 0.17.2 (#480728)

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This commit is contained in:
kirillrdy
2026-01-17 21:26:37 +00:00
committed by GitHub
parent 95470921da fe72e20620
commit 692780dd79
7 changed files with 387 additions and 22 deletions
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pkgs/development/python-modules/arviz-base/default.nix
+120
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@@ -0,0 +1,120 @@
{
lib,
buildPythonPackage,
fetchFromGitHub,
# build-system
flit-core,
# dependencies
numpy,
typing-extensions,
xarray,
# optional-dependencies
black,
build,
isort,
mypy,
pre-commit,
cloudpickle,
h5netcdf,
jupyter-sphinx,
myst-nb,
myst-parser,
numpydoc,
sphinx,
sphinx-book-theme,
sphinx-copybutton,
sphinx-design,
netcdf4,
pytest,
pytest-cov,
scipy,
zarr,
# tests
pytestCheckHook,
writableTmpDirAsHomeHook,
}:
buildPythonPackage (finalAttrs: {
pname = "arviz-base";
version = "0.8.2";
pyproject = true;
src = fetchFromGitHub {
owner = "arviz-devs";
repo = "arviz-base";
tag = "v${finalAttrs.version}";
hash = "sha256-g2DmhYqO9dgvDZwAXXSDFn5wHU0BvxXNgOzk6mmEmsw=";
};
build-system = [
flit-core
];
dependencies = [
numpy
typing-extensions
xarray
];
optional-dependencies = {
check = [
black
build
# docstub
isort
mypy
pre-commit
];
ci = [
cloudpickle
pre-commit
];
doc = [
h5netcdf
jupyter-sphinx
myst-nb
myst-parser
numpydoc
sphinx
sphinx-book-theme
sphinx-copybutton
sphinx-design
];
h5netcdf = [
h5netcdf
];
netcdf4 = [
netcdf4
];
test = [
pytest
pytest-cov
scipy
xarray
];
zarr = [
zarr
];
};
pythonImportsCheck = [ "arviz_base" ];
nativeCheckInputs = [
h5netcdf
netcdf4
pytestCheckHook
writableTmpDirAsHomeHook
];
meta = {
description = "Base ArviZ features and converters";
homepage = "https://github.com/arviz-devs/arviz-base";
changelog = "https://github.com/arviz-devs/arviz-base/blob/${finalAttrs.src.tag}/CHANGELOG.md";
license = lib.licenses.asl20;
maintainers = with lib.maintainers; [ GaetanLepage ];
};
})
pkgs/development/python-modules/arviz-plots/default.nix
+121
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@@ -0,0 +1,121 @@
{
lib,
stdenv,
buildPythonPackage,
fetchFromGitHub,
# build-system
flit-core,
# dependencies
arviz-base,
arviz-stats,
# optional-dependencies
# bokeh
bokeh,
# doc
h5netcdf,
jupyter-sphinx,
myst-nb,
myst-parser,
numpydoc,
plotly,
sphinx,
sphinx-book-theme,
sphinx-copybutton,
sphinx-design,
# matplotlib
matplotlib,
# plotly
webcolors,
# test
hypothesis,
kaleido,
pytest,
pytest-cov,
# tests
pytestCheckHook,
}:
buildPythonPackage (finalAttrs: {
pname = "arviz-plots";
version = "0.8.0";
pyproject = true;
src = fetchFromGitHub {
owner = "arviz-devs";
repo = "arviz-plots";
tag = "v${finalAttrs.version}";
hash = "sha256-x4UoUSKz+MAI082afnGhfoy2ad/hPK89Y1B2oEnxhsg=";
};
build-system = [
flit-core
];
dependencies = [
arviz-base
arviz-stats
]
# Otherwise, import fails with "ModuleNotFoundError: No module named 'xarray_einstats'"
++ arviz-stats.optional-dependencies.xarray;
optional-dependencies = {
bokeh = [
bokeh
];
doc = [
h5netcdf
jupyter-sphinx
myst-nb
myst-parser
numpydoc
plotly
sphinx
sphinx-book-theme
sphinx-copybutton
sphinx-design
];
matplotlib = [
matplotlib
];
plotly = [
plotly
webcolors
];
test = [
h5netcdf
hypothesis
kaleido
pytest
pytest-cov
];
};
pythonImportsCheck = [ "arviz_plots" ];
env = lib.optionalAttrs stdenv.hostPlatform.isDarwin {
# Prevents 'Fatal Python error: Aborted' on darwin during checkPhase
MPLBACKEND = "Agg";
};
nativeCheckInputs = [
bokeh
h5netcdf
hypothesis
matplotlib
plotly
pytestCheckHook
webcolors
];
meta = {
description = "ArviZ modular plotting";
homepage = "https://github.com/arviz-devs/arviz-plots";
changelog = "https://github.com/arviz-devs/arviz-plots/blob/${finalAttrs.src.tag}/CHANGELOG.md";
license = lib.licenses.asl20;
maintainers = with lib.maintainers; [ GaetanLepage ];
};
})
pkgs/development/python-modules/arviz-stats/default.nix
+106
View File
@@ -0,0 +1,106 @@
{
lib,
buildPythonPackage,
fetchFromGitHub,
# build-system
flit-core,
# dependencies
numpy,
scipy,
# optional-dependencies
# doc
h5netcdf,
jupyter-sphinx,
myst-nb,
myst-parser,
numpydoc,
sphinx,
sphinx-book-theme,
sphinx-copybutton,
sphinx-design,
# numba
numba,
xarray-einstats,
# test
pytest,
pytest-cov,
# xarray
arviz-base,
xarray,
# tests
pytestCheckHook,
}:
buildPythonPackage (finalAttrs: {
pname = "arviz-stats";
version = "0.8.0";
pyproject = true;
src = fetchFromGitHub {
owner = "arviz-devs";
repo = "arviz-stats";
tag = "v${finalAttrs.version}";
hash = "sha256-FAZXnKxNb/DPkcpIRJRIzSbthS8Djf75hd5WMxegdhY=";
};
build-system = [
flit-core
];
dependencies = [
numpy
scipy
];
optional-dependencies = {
doc = [
h5netcdf
jupyter-sphinx
myst-nb
myst-parser
numpydoc
sphinx
# sphinx-autosummary-accessors
sphinx-book-theme
sphinx-copybutton
sphinx-design
];
numba = [
numba
xarray-einstats
];
test = [
pytest
pytest-cov
];
test-xarray = [
h5netcdf
pytest
pytest-cov
];
xarray = [
arviz-base
xarray
xarray-einstats
];
};
pythonImportsCheck = [ "arviz_stats" ];
nativeCheckInputs = [
pytestCheckHook
];
meta = {
description = "Statistical computation and diagnostics for ArviZ";
homepage = "https://github.com/arviz-devs/arviz-stats";
changelog = "https://github.com/arviz-devs/arviz-stats/blob/${finalAttrs.src.tag}/CHANGELOG.md";
license = lib.licenses.asl20;
maintainers = with lib.maintainers; [ GaetanLepage ];
};
})
pkgs/development/python-modules/arviz/default.nix
+7 -7
View File
@@ -39,16 +39,16 @@
zarr,
}:
buildPythonPackage rec {
buildPythonPackage (finalAttrs: {
pname = "arviz";
version = "0.23.0";
version = "0.23.1";
pyproject = true;
src = fetchFromGitHub {
owner = "arviz-devs";
repo = "arviz";
tag = "v${version}";
hash = "sha256-/Xz4hTKB1lh9cxHkVXAZY8NsZoqdadukI/V1/LRZu24=";
tag = "v${finalAttrs.version}";
hash = "sha256-twAYCH8jsOnXVD3+sstOLEGG1Enbq8M8ZQWffFVzS48=";
};
nativeBuildInputs = [
@@ -65,6 +65,7 @@ buildPythonPackage rec {
dependencies = [
h5netcdf
h5py
matplotlib
numpy
pandas
@@ -79,7 +80,6 @@ buildPythonPackage rec {
cloudpickle
emcee
ffmpeg
h5py
jax
jaxlib
numba
@@ -124,8 +124,8 @@ buildPythonPackage rec {
meta = {
description = "Library for exploratory analysis of Bayesian models";
homepage = "https://arviz-devs.github.io/arviz/";
changelog = "https://github.com/arviz-devs/arviz/blob/v${version}/CHANGELOG.md";
changelog = "https://github.com/arviz-devs/arviz/blob/${finalAttrs.src.tag}/CHANGELOG.md";
license = lib.licenses.asl20;
maintainers = with lib.maintainers; [ omnipotententity ];
};
}
})
pkgs/development/python-modules/bambi/default.nix
+12 -8
View File
@@ -9,11 +9,13 @@
setuptools-scm,
# dependencies
arviz,
arviz-plots,
formulae,
graphviz,
matplotlib,
pandas,
pymc,
sparse,
# tests
blackjax,
@@ -22,16 +24,16 @@
writableTmpDirAsHomeHook,
}:
buildPythonPackage rec {
buildPythonPackage (finalAttrs: {
pname = "bambi";
version = "0.16.0";
version = "0.17.2";
pyproject = true;
src = fetchFromGitHub {
owner = "bambinos";
repo = "bambi";
tag = version;
hash = "sha256-EKcURfC4IpLGzr5ibzVlUnRHIhwPP+kYYusW9Mk8R/s=";
tag = finalAttrs.version;
hash = "sha256-Vjv62cYDIuTLE7MxRt4Havy7DMOiMTyIixbs4LGFGGs=";
};
build-system = [
@@ -40,11 +42,13 @@ buildPythonPackage rec {
];
dependencies = [
arviz
arviz-plots
formulae
graphviz
matplotlib
pandas
pymc
sparse
];
optional-dependencies = {
@@ -124,8 +128,8 @@ buildPythonPackage rec {
meta = {
description = "High-level Bayesian model-building interface";
homepage = "https://bambinos.github.io/bambi";
changelog = "https://github.com/bambinos/bambi/releases/tag/${src.tag}";
changelog = "https://github.com/bambinos/bambi/releases/tag/${finalAttrs.src.tag}";
license = lib.licenses.mit;
maintainers = with lib.maintainers; [ bcdarwin ];
};
}
})
pkgs/development/python-modules/formulae/default.nix
+15 -7
View File
@@ -2,24 +2,31 @@
lib,
buildPythonPackage,
fetchFromGitHub,
# build-system
setuptools,
setuptools-scm,
pytestCheckHook,
# dependencies
numpy,
packaging,
pandas,
scipy,
# tests
pytestCheckHook,
}:
buildPythonPackage rec {
buildPythonPackage (finalAttrs: {
pname = "formulae";
version = "0.5.4";
version = "0.6.1";
pyproject = true;
src = fetchFromGitHub {
owner = "bambinos";
repo = "formulae";
tag = version;
hash = "sha256-SSyQa7soIp+wSXX5wek9LG95q7J7K34mztzx01lPiWo=";
tag = finalAttrs.version;
hash = "sha256-RrG0jkQAGq04cQ1MY5W0j76++tu7NerLC/HHpVVa5xQ=";
};
build-system = [
@@ -29,6 +36,7 @@ buildPythonPackage rec {
dependencies = [
numpy
packaging
pandas
scipy
];
@@ -51,8 +59,8 @@ buildPythonPackage rec {
meta = {
homepage = "https://bambinos.github.io/formulae";
description = "Formulas for mixed-effects models in Python";
changelog = "https://github.com/bambinos/formulae/releases/tag/${src.tag}";
changelog = "https://github.com/bambinos/formulae/releases/tag/${finalAttrs.src.tag}";
license = lib.licenses.mit;
maintainers = with lib.maintainers; [ bcdarwin ];
};
}
})
pkgs/top-level/python-packages.nix
+6
View File
@@ -962,6 +962,12 @@ self: super: with self; {
arviz = callPackage ../development/python-modules/arviz { };
arviz-base = callPackage ../development/python-modules/arviz-base { };
arviz-plots = callPackage ../development/python-modules/arviz-plots { };
arviz-stats = callPackage ../development/python-modules/arviz-stats { };
arxiv = callPackage ../development/python-modules/arxiv { };
arxiv2bib = callPackage ../development/python-modules/arxiv2bib { };