rPackages: fixed script to generate rPackages set
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@@ -16,9 +16,9 @@ locale <- Sys.setlocale(locale = "C")
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biocVersion <- BiocManager:::.version_map()
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biocVersion <- biocVersion[biocVersion$R == getRversion()[, 1:2],c("Bioc", "BiocStatus")]
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if ("release" %in% biocVersion$BiocStatus) {
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biocVersion <- as.numeric(as.character(biocVersion[biocVersion$BiocStatus == "release", "Bioc"]))
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biocVersion <- as.character(biocVersion[biocVersion$BiocStatus == "release", "Bioc"])
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} else {
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biocVersion <- max(as.numeric(as.character(biocVersion$Bioc)))
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biocVersion <- max(as.character(biocVersion$Bioc))
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}
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mirrorUrls <- list( bioc=paste0("http://bioconductor.org/packages/", biocVersion, "/bioc/src/contrib/")
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@@ -115,4 +115,3 @@ if (mirrorType != "cran") {
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cat(toJSON(list(extraArgs=extraArgs, packages=c(pkgs, brokenPkgs)), pretty=TRUE))
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cat("\n")
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write("done", stderr())
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