medfile: migrate to by-name (#527785)

pkgs/by-name/me/medfile/package.nix

@@ -44,7 +44,7 @@ stdenv.mkDerivation (finalAttrs: {
 
   nativeBuildInputs = [ cmake ];
 
-  buildInputs = [ hdf5 ];
+  buildInputs = [ (hdf5.override { apiVersion = "v110"; }) ];
 
   checkPhase = "make test";
 

pkgs/top-level/all-packages.nix

@@ -2571,10 +2571,6 @@ with pkgs;
     inherit (python3Packages) ansi2html;
   };
 
-  medfile = callPackage ../development/libraries/medfile {
-    hdf5 = hdf5.override { apiVersion = "v110"; };
-  };
-
   mhonarc = perlPackages.MHonArc;
 
   nanoemoji = with python3Packages; toPythonApplication nanoemoji;