various: migrate python3Packages to by-name

pkgs/by-name/aw/aws-mfa/package.nix

@@ -1,13 +1,11 @@
 {
   lib,
-  buildPythonApplication,
+  python3Packages,
   fetchFromGitHub,
   fetchpatch,
-  setuptools,
-  boto3,
 }:
 
-buildPythonApplication rec {
+python3Packages.buildPythonApplication rec {
   pname = "aws-mfa";
   version = "0.0.12";
   pyproject = true;
@@ -28,11 +26,11 @@ buildPythonApplication rec {
     })
   ];
 
-  build-system = [
+  build-system = with python3Packages; [
     setuptools
   ];
 
-  dependencies = [
+  dependencies = with python3Packages; [
     boto3
   ];
 

pkgs/by-name/fu/fusesoc/package.nix

@@ -1,19 +1,12 @@
 {
-  buildPythonPackage,
+  python3Packages,
   fetchPypi,
   lib,
   iverilog,
   verilator,
   gnumake,
-  edalize,
-  fastjsonschema,
-  pyparsing,
-  pyyaml,
-  simplesat,
-  ipyxact,
-  setuptools-scm,
 }:
-buildPythonPackage rec {
+python3Packages.buildPythonPackage rec {
   pname = "fusesoc";
   version = "2.2.1";
   format = "setuptools";
@@ -23,9 +16,9 @@ buildPythonPackage rec {
     hash = "sha256-M36bXBgY8hR33AVDlHoH8PZJG2Bi0KOEI07IMns7R4w=";
   };
 
-  nativeBuildInputs = [ setuptools-scm ];
+  nativeBuildInputs = with python3Packages; [ setuptools-scm ];
 
-  propagatedBuildInputs = [
+  dependencies = with python3Packages; [
     edalize
     fastjsonschema
     pyparsing

pkgs/by-name/gi/git-annex-remote-googledrive/package.nix

@@ -1,17 +1,10 @@
 {
   lib,
-  annexremote,
-  buildPythonApplication,
-  drivelib,
+  python3Packages,
   fetchPypi,
-  gitpython,
-  humanfriendly,
-  tenacity,
-  setuptools,
-  distutils,
 }:
 
-buildPythonApplication rec {
+python3Packages.buildPythonApplication rec {
   pname = "git-annex-remote-googledrive";
   version = "1.3.2";
   pyproject = true;
@@ -21,9 +14,9 @@ buildPythonApplication rec {
     sha256 = "0rwjcdvfgzdlfgrn1rrqwwwiqqzyh114qddrbfwd46ld5spry6r1";
   };
 
-  build-system = [ setuptools ];
+  build-system = with python3Packages; [ setuptools ];
 
-  propagatedBuildInputs = [
+  dependencies = with python3Packages; [
     annexremote
     drivelib
     gitpython

pkgs/by-name/gi/gita/package.nix

@@ -1,13 +1,11 @@
 {
   lib,
-  buildPythonApplication,
+  python3Packages,
   fetchFromGitHub,
-  pyyaml,
-  setuptools,
   installShellFiles,
 }:
 
-buildPythonApplication rec {
+python3Packages.buildPythonApplication rec {
   version = "0.16.6.1";
   format = "setuptools";
   pname = "gita";
@@ -19,7 +17,7 @@ buildPythonApplication rec {
     owner = "nosarthur";
   };
 
-  propagatedBuildInputs = [
+  dependencies = with python3Packages; [
     pyyaml
     setuptools
   ];

pkgs/by-name/mp/mpy-utils/package.nix

@@ -1,13 +1,11 @@
 {
   stdenv,
   lib,
-  buildPythonApplication,
+  python3Packages,
   fetchPypi,
-  fusepy,
-  pyserial,
 }:
 
-buildPythonApplication rec {
+python3Packages.buildPythonApplication rec {
   pname = "mpy-utils";
   version = "0.1.13";
   format = "setuptools";
@@ -17,7 +15,7 @@ buildPythonApplication rec {
     hash = "sha256-die8hseaidhs9X7mfFvV8C8zn0uyw08gcHNqmjl+2Z4=";
   };
 
-  propagatedBuildInputs = [
+  propagatedBuildInputs = with python3Packages; [
     fusepy
     pyserial
   ];

pkgs/by-name/ne/networkd-notify/package.nix

@@ -1,15 +1,13 @@
 {
   lib,
   fetchFromGitLab,
-  buildPythonApplication,
-  dbus-python,
-  pygobject3,
+  python3Packages,
   systemd,
   wirelesstools,
   wrapGAppsNoGuiHook,
 }:
 
-buildPythonApplication rec {
+python3Packages.buildPythonApplication rec {
   pname = "networkd-notify";
   version = "unstable-2022-11-29";
   # There is no setup.py, just a single Python script.
@@ -26,7 +24,7 @@ buildPythonApplication rec {
     wrapGAppsNoGuiHook
   ];
 
-  propagatedBuildInputs = [
+  dependencies = with python3Packages; [
     dbus-python
     pygobject3
   ];

pkgs/by-name/pa/pass-git-helper/package.nix

@@ -1,15 +1,10 @@
 {
   lib,
-  buildPythonApplication,
+  python3Packages,
   fetchFromGitHub,
-  pyxdg,
-  pytestCheckHook,
-  pytest-cov-stub,
-  pytest-mock,
-  setuptools,
 }:
 
-buildPythonApplication rec {
+python3Packages.buildPythonApplication rec {
   pname = "pass-git-helper";
   version = "4.0.0";
   pyproject = true;
@@ -21,15 +16,15 @@ buildPythonApplication rec {
     sha256 = "sha256-SAMndgcxBa7wymXbOwRGcoogFfzpFFIZ0tF4NSCXpjw=";
   };
 
-  build-system = [ setuptools ];
+  build-system = with python3Packages; [ setuptools ];
 
-  dependencies = [ pyxdg ];
+  dependencies = with python3Packages; [ pyxdg ];
 
   env.HOME = "$TMPDIR";
 
   pythonImportsCheck = [ "passgithelper" ];
 
-  nativeCheckInputs = [
+  nativeCheckInputs = with python3Packages; [
     pytestCheckHook
     pytest-cov-stub
     pytest-mock

pkgs/by-name/si/silver-platter/package.nix

@@ -1,24 +1,17 @@
 {
-  buildPythonApplication,
+  python3Packages,
   lib,
   stdenv,
   fetchFromGitHub,
   pkg-config,
-  setuptools,
-  setuptools-rust,
   rustPlatform,
   cargo,
   rustc,
-  breezy,
-  dulwich,
-  jinja2,
   libiconv,
   openssl,
-  pyyaml,
-  ruamel-yaml,
 }:
 
-buildPythonApplication rec {
+python3Packages.buildPythonApplication rec {
   pname = "silver-platter";
   version = "0.5.20";
   pyproject = true;
@@ -35,7 +28,7 @@ buildPythonApplication rec {
     hash = "sha256-hZQfzaLvHSN/hGR5vn+/2TRH6GwDTTp+UcnePXY7JlM=";
   };
 
-  propagatedBuildInputs = [
+  dependencies = with python3Packages; [
     setuptools
     breezy
     dulwich
@@ -44,7 +37,7 @@ buildPythonApplication rec {
     ruamel-yaml
   ];
   nativeBuildInputs = [
-    setuptools-rust
+    python3Packages.setuptools-rust
     rustPlatform.cargoSetupHook
     cargo
     rustc

pkgs/top-level/all-packages.nix

@@ -1083,12 +1083,6 @@ with pkgs;
 
   mkosi-full = mkosi.override { withQemu = true; };
 
-  mpy-utils = python3Packages.callPackage ../tools/misc/mpy-utils { };
-
-  networkd-notify = python3Packages.callPackage ../tools/networking/networkd-notify {
-    systemd = pkgs.systemd;
-  };
-
   ocs-url = libsForQt5.callPackage ../tools/misc/ocs-url { };
 
   openbugs = pkgsi686Linux.callPackage ../applications/science/machine-learning/openbugs { };
@@ -1217,8 +1211,6 @@ with pkgs;
 
   forgejo-lts = callPackage ../by-name/fo/forgejo/lts.nix { };
 
-  gita = python3Packages.callPackage ../applications/version-management/gita { };
-
   github-cli = gh;
 
   git-annex-metadata-gui =
@@ -1236,10 +1228,6 @@ with pkgs;
       ;
   };
 
-  git-annex-remote-googledrive =
-    python3Packages.callPackage ../applications/version-management/git-annex-remote-googledrive
-      { };
-
   git-credential-manager = callPackage ../applications/version-management/git-credential-manager { };
 
   gitRepo = git-repo;
@@ -1255,14 +1243,8 @@ with pkgs;
       ;
   };
 
-  pass-git-helper =
-    python3Packages.callPackage ../applications/version-management/pass-git-helper
-      { };
-
   qgit = qt6Packages.callPackage ../applications/version-management/qgit { };
 
-  silver-platter = python3Packages.callPackage ../applications/version-management/silver-platter { };
-
   svn-all-fast-export =
     libsForQt5.callPackage ../applications/version-management/svn-all-fast-export
       { };
@@ -1324,8 +1306,6 @@ with pkgs;
 
   firebird-emu = libsForQt5.callPackage ../applications/emulators/firebird-emu { };
 
-  fusesoc = python3Packages.callPackage ../tools/package-management/fusesoc { };
-
   gcdemu = callPackage ../applications/emulators/cdemu/gui.nix { };
 
   gensgs = pkgsi686Linux.callPackage ../applications/emulators/gens-gs { };
@@ -1547,8 +1527,6 @@ with pkgs;
 
   autoflake = with python3.pkgs; toPythonApplication autoflake;
 
-  aws-mfa = python3Packages.callPackage ../tools/admin/aws-mfa { };
-
   azure-cli-extensions = recurseIntoAttrs azure-cli.extensions;
 
   # Derivation's result is not used by nixpkgs. Useful for validation for