star: cleanup and enable all unix platforms
This commit is contained in:
@@ -4,6 +4,10 @@
|
||||
fetchFromGitHub,
|
||||
xxd,
|
||||
zlib,
|
||||
llvmPackages,
|
||||
star,
|
||||
testers,
|
||||
nix-update-script,
|
||||
}:
|
||||
|
||||
stdenv.mkDerivation rec {
|
||||
@@ -20,31 +24,48 @@ stdenv.mkDerivation rec {
|
||||
sourceRoot = "${src.name}/source";
|
||||
|
||||
postPatch = ''
|
||||
substituteInPlace Makefile --replace "/bin/rm" "rm"
|
||||
substituteInPlace Makefile --replace-fail "-std=c++11" "-std=c++14"
|
||||
'';
|
||||
|
||||
nativeBuildInputs = [ xxd ];
|
||||
|
||||
buildInputs = [ zlib ];
|
||||
buildInputs = [ zlib ] ++ lib.optionals stdenv.isDarwin [ llvmPackages.openmp ];
|
||||
|
||||
enableParallelBuilding = true;
|
||||
|
||||
makeFlags = lib.optionals stdenv.hostPlatform.isAarch64 [ "CXXFLAGS_SIMD=" ];
|
||||
|
||||
preBuild = lib.optionalString stdenv.isDarwin ''
|
||||
export CXXFLAGS="$CXXFLAGS -DSHM_NORESERVE=0"
|
||||
'';
|
||||
|
||||
buildFlags = [
|
||||
"STAR"
|
||||
"STARlong"
|
||||
];
|
||||
|
||||
enableParallelBuilding = true;
|
||||
|
||||
installPhase = ''
|
||||
runHook preInstall
|
||||
install -D STAR STARlong -t $out/bin
|
||||
runHook postInstall
|
||||
'';
|
||||
|
||||
passthru.tests.version = testers.testVersion {
|
||||
package = star;
|
||||
command = "STAR --version";
|
||||
};
|
||||
|
||||
passthru.updateScript = nix-update-script { };
|
||||
|
||||
meta = with lib; {
|
||||
description = "Spliced Transcripts Alignment to a Reference";
|
||||
longDescription = ''
|
||||
STAR (Spliced Transcripts Alignment to a Reference) is a fast RNA-seq
|
||||
read mapper, with support for splice-junction and fusion read detection.
|
||||
'';
|
||||
homepage = "https://github.com/alexdobin/STAR";
|
||||
license = licenses.gpl3Plus;
|
||||
platforms = [ "x86_64-linux" ];
|
||||
platforms = platforms.unix;
|
||||
maintainers = [ maintainers.arcadio ];
|
||||
};
|
||||
}
|
||||
|
||||
Reference in New Issue
Block a user