rPackages.pathfindR: fix missing java

2024-02-25 00:07:13 +01:00
parent 445d8223cb
commit 34faa136b5
1 changed files with 9 additions and 0 deletions
@@ -1045,6 +1045,15 @@ let
        '';
    });

+    pathfindR = old.pathfindR.overrideAttrs (attrs: {
+      postPatch = ''
+        substituteInPlace "R/zzz.R" \
+          --replace-fail "    check_java_version()" "    Sys.setenv(JAVA_HOME = \"${lib.getBin pkgs.jre_minimal}\"); check_java_version()"
+        substituteInPlace "R/active_snw_search.R" \
+          --replace-fail "system(paste0(\"java" "system(paste0(\"${lib.getBin pkgs.jre_minimal}/bin/java"
+      '';
+    });
+
    pbdZMQ = old.pbdZMQ.overrideAttrs (attrs: {
      postPatch = lib.optionalString stdenv.isDarwin ''
        for file in R/*.{r,r.in}; do