python3Packages.firedrake: init at 2025.4.0.post0 (#406239)

2025-05-14 19:01:28 -04:00
parent ae12694b51 04dd87a7b3
commit 33496394a4
2 changed files with 197 additions and 0 deletions
@@ -0,0 +1,195 @@
+{
+  lib,
+  newScope,
+  stdenv,
+  buildPythonPackage,
+  fetchFromGitHub,
+  fetchpatch2,
+  python,
+  pax-utils,
+
+  # build-system
+  setuptools,
+  cython,
+  pybind11,
+
+  # dependencies
+  decorator,
+  cachetools,
+  mpi4py,
+  fenics-ufl,
+  firedrake-fiat,
+  h5py,
+  libsupermesh,
+  loopy,
+  petsc4py,
+  numpy,
+  packaging,
+  pkgconfig,
+  progress,
+  pyadjoint-ad,
+  pycparser,
+  pytools,
+  requests,
+  rtree,
+  scipy,
+  sympy,
+  islpy,
+  matplotlib,
+
+  # tests
+  pytest,
+  mpi-pytest,
+  mpiCheckPhaseHook,
+  writableTmpDirAsHomeHook,
+
+  # passthru.tests
+  firedrake,
+  mpich,
+}:
+let
+  firedrakePackages = lib.makeScope newScope (self: {
+    inherit (petsc4py.petscPackages) mpi hdf5;
+    mpi4py = self.callPackage mpi4py.override { };
+    h5py = self.callPackage h5py.override { };
+    mpi-pytest = self.callPackage mpi-pytest.override { };
+  });
+in
+buildPythonPackage rec {
+  pname = "firedrake";
+  version = "2025.4.0.post0";
+  pyproject = true;
+
+  src = fetchFromGitHub {
+    owner = "firedrakeproject";
+    repo = "firedrake";
+    tag = version;
+    hash = "sha256-wQOS4v/YkIwXdQq6JMvRbmyhnzvx6wj0O6aszNa5ZMw=";
+  };
+
+  patches = [
+    (fetchpatch2 {
+      url = "https://github.com/firedrakeproject/firedrake/commit/b358e33ab12b3c4bc3819c9c6e9ed0930082b750.patch?full_index=1";
+      hash = "sha256-y00GB8njhmHgtAVvlv8ImsJe+hMCU1QFtbB8llEhv/I=";
+    })
+  ];
+
+  postPatch =
+    ''
+      # relax build-dependency petsc4py
+      substituteInPlace pyproject.toml --replace-fail \
+        "petsc4py==3.23.0" "petsc4py"
+
+      # These scripts are used by official source distribution only,
+      # and do not make sense in our binary distribution.
+      sed -i '/firedrake-\(check\|status\|run-split-tests\)/d' pyproject.toml
+    ''
+    + lib.optionalString stdenv.hostPlatform.isLinux ''
+      substituteInPlace firedrake/petsc.py --replace-fail \
+        'program = ["ldd"]' \
+        'program = ["${lib.getExe' pax-utils "lddtree"}"]'
+    ''
+    + lib.optionalString stdenv.hostPlatform.isDarwin ''
+      substituteInPlace firedrake/petsc.py --replace-fail \
+        'program = ["otool"' \
+        'program = ["${lib.getExe' stdenv.cc.bintools.bintools "otool"}"'
+    '';
+
+  pythonRelaxDeps = [
+    "decorator"
+  ];
+
+  build-system = [
+    cython
+    libsupermesh
+    firedrakePackages.mpi4py
+    numpy
+    pkgconfig
+    pybind11
+    setuptools
+    petsc4py
+    rtree
+  ];
+
+  nativeBuildInputs = [
+    firedrakePackages.mpi
+  ];
+
+  dependencies =
+    [
+      decorator
+      cachetools
+      firedrakePackages.mpi4py
+      fenics-ufl
+      firedrake-fiat
+      firedrakePackages.h5py
+      libsupermesh
+      loopy
+      petsc4py
+      numpy
+      packaging
+      pkgconfig
+      progress
+      pyadjoint-ad
+      pycparser
+      pytools
+      requests
+      rtree
+      scipy
+      sympy
+      # required by script spydump
+      matplotlib
+    ]
+    ++ pytools.optional-dependencies.siphash
+    ++ lib.optional stdenv.hostPlatform.isDarwin islpy;
+
+  postFixup = lib.optionalString stdenv.hostPlatform.isDarwin ''
+    install_name_tool -add_rpath ${libsupermesh}/${python.sitePackages}/libsupermesh/lib \
+      $out/${python.sitePackages}/firedrake/cython/supermeshimpl.cpython-*-darwin.so
+  '';
+
+  doCheck = true;
+
+  __darwinAllowLocalNetworking = true;
+
+  pythonImportsCheck = [ "firedrake" ];
+
+  nativeCheckInputs = [
+    pytest
+    firedrakePackages.mpi-pytest
+    mpiCheckPhaseHook
+    writableTmpDirAsHomeHook
+  ];
+
+  preCheck = ''
+    rm -rf firedrake pyop2 tinyasm tsfc
+  '';
+
+  # run official smoke tests
+  checkPhase = ''
+    runHook preCheck
+
+    make check
+
+    runHook postCheck
+  '';
+
+  passthru = {
+    tests = lib.optionalAttrs stdenv.hostPlatform.isLinux {
+      mpich = firedrake.override {
+        petsc4py = petsc4py.override { mpi = mpich; };
+      };
+    };
+  };
+
+  meta = {
+    homepage = "https://www.firedrakeproject.org";
+    downloadPage = "https://github.com/firedrakeproject/firedrake";
+    description = "Automated Finite Element System";
+    license = with lib.licenses; [
+      bsd3
+      lgpl3Plus
+    ];
+    maintainers = with lib.maintainers; [ qbisi ];
+  };
+}
@@ -4951,6 +4951,8 @@ self: super: with self; {

  firecrawl-py = callPackage ../development/python-modules/firecrawl-py { };

+  firedrake = callPackage ../development/python-modules/firedrake { };
+
  firedrake-fiat = callPackage ../development/python-modules/firedrake-fiat { };

  fireflyalgorithm = callPackage ../development/python-modules/fireflyalgorithm { };