Revert "python312Packages.dask: 2024.12.1 -> 2025.1.0" (#381080)
This commit is contained in:
Gaétan Lepage
@@ -11,13 +11,13 @@
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buildPythonPackage rec {
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pname = "awkward-cpp";
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version = "44";
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version = "43";
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pyproject = true;
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src = fetchPypi {
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pname = "awkward_cpp";
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inherit version;
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hash = "sha256-jcSZKI1tFrLqILUaJ9UEflGiR7aqz8vLOzAsrW08h9g=";
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hash = "sha256-we11WW7IKvZm2ghLW/gF2bcsg1MtA10rZeB5WQXSXq0=";
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};
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build-system = [
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@@ -1,7 +1,7 @@
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{
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lib,
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stdenv,
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buildPythonPackage,
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pythonOlder,
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fetchFromGitHub,
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# build-system
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@@ -13,27 +13,29 @@
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fsspec,
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numpy,
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packaging,
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typing-extensions,
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importlib-metadata,
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# tests
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# checks
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numba,
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setuptools,
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numexpr,
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pandas,
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pyarrow,
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pytest-xdist,
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pytestCheckHook,
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setuptools,
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}:
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buildPythonPackage rec {
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pname = "awkward";
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version = "2.7.4";
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version = "2.7.2";
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pyproject = true;
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src = fetchFromGitHub {
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owner = "scikit-hep";
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repo = "awkward";
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tag = "v${version}";
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hash = "sha256-OXSl+8sfrx+JlLu40wHf+98WVNNwm9uxvsnGXRDztDg=";
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hash = "sha256-nOKMwAQ5t8tc64bEKz0j8JxxoVQQu39Iu8Zr9cqSx7A=";
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};
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build-system = [
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@@ -41,12 +43,15 @@ buildPythonPackage rec {
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hatchling
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];
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dependencies = [
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awkward-cpp
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fsspec
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numpy
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packaging
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];
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dependencies =
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[
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awkward-cpp
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fsspec
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numpy
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packaging
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]
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++ lib.optionals (pythonOlder "3.11") [ typing-extensions ]
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++ lib.optionals (pythonOlder "3.12") [ importlib-metadata ];
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dontUseCmakeConfigure = true;
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@@ -55,35 +60,19 @@ buildPythonPackage rec {
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nativeCheckInputs = [
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fsspec
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numba
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setuptools
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numexpr
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pandas
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pyarrow
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pytest-xdist
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pytestCheckHook
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setuptools
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];
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disabledTests = [
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# pyarrow.lib.ArrowInvalid
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"test_recordarray"
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disabledTestPaths = [
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# Need to be run on a GPU platform.
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"tests-cuda"
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];
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disabledTestPaths =
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[
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# Need to be run on a GPU platform.
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"tests-cuda"
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]
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++ lib.optionals (stdenv.hostPlatform.isLinux && stdenv.hostPlatform.isAarch64) [
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# Fatal Python error: Segmentation fault at:
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# numba/typed/typedlist.py", line 344 in append
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"tests/test_0118_numba_cpointers.py"
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"tests/test_0397_arrays_as_constants_in_numba.py"
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"tests/test_1677_array_builder_in_numba.py"
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"tests/test_2055_array_builder_check.py"
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"tests/test_2349_growablebuffer_in_numba.py"
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"tests/test_2408_layoutbuilder_in_numba.py"
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];
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meta = {
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description = "Manipulate JSON-like data with NumPy-like idioms";
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homepage = "https://github.com/scikit-hep/awkward";
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@@ -22,8 +22,8 @@ buildPythonPackage rec {
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pname
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version
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src
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meta
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;
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pyproject = true;
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sourceRoot = "${src.name}/catboost/python-package";
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@@ -55,9 +55,4 @@ buildPythonPackage rec {
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doCheck = false;
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pythonImportsCheck = [ "catboost" ];
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meta = catboost.meta // {
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# Incompatible with numpy >= 2.0
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broken = true;
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};
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}
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@@ -57,10 +57,6 @@ buildPythonPackage rec {
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hatch-vcs
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];
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pythonRelaxDeps = [
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"dask"
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];
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dependencies = [
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aiohttp
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awkward
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@@ -110,10 +106,6 @@ buildPythonPackage rec {
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# AssertionError: bug in Awkward Array: attempt to convert TypeTracerArray into a concrete array
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"test_apply_to_fileset"
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"test_lorentz_behavior"
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# ValueError: The array to mask was deleted before it could be masked.
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# If you want to construct this mask, you must either keep the array alive or use 'ak.mask' explicitly.
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"test_read_nanomc"
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];
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__darwinAllowLocalNetworking = true;
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@@ -16,7 +16,7 @@
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# optional-dependencies
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pyarrow,
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# tests
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# checks
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dask-histogram,
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distributed,
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hist,
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@@ -27,14 +27,14 @@
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buildPythonPackage rec {
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pname = "dask-awkward";
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version = "2025.2.0";
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version = "2024.12.2";
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pyproject = true;
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src = fetchFromGitHub {
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owner = "dask-contrib";
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repo = "dask-awkward";
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tag = version;
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hash = "sha256-hhAY2cPUOYnP86FGsLvxlMeoEwY+sTrjPMKyuZrO0/M=";
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hash = "sha256-pL1LDW/q78V/c3Bha38k40018MFO+i8X6htYNdcsy7s=";
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};
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build-system = [
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@@ -53,8 +53,8 @@ buildPythonPackage rec {
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io = [ pyarrow ];
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};
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nativeCheckInputs = [
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# dask-histogram (circular dependency)
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checkInputs = [
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dask-histogram
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distributed
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hist
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pandas
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@@ -86,7 +86,7 @@ buildPythonPackage rec {
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meta = {
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description = "Native Dask collection for awkward arrays, and the library to use it";
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homepage = "https://github.com/dask-contrib/dask-awkward";
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changelog = "https://github.com/dask-contrib/dask-awkward/releases/tag/${version}";
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changelog = "https://github.com/dask-contrib/dask-awkward/releases/tag/${src.tag}";
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license = lib.licenses.bsd3;
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maintainers = with lib.maintainers; [ veprbl ];
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};
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@@ -0,0 +1,65 @@
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{
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lib,
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buildPythonPackage,
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fetchFromGitHub,
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# build-system
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setuptools,
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versioneer,
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# dependencies
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dask,
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pandas,
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pyarrow,
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# checks
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jinja2,
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pytestCheckHook,
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xarray,
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}:
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buildPythonPackage rec {
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pname = "dask-expr";
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version = "1.1.21";
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pyproject = true;
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src = fetchFromGitHub {
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owner = "dask";
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repo = "dask-expr";
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tag = "v${version}";
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hash = "sha256-t1vPlTxV5JYArg/a7CzPP13NHbstEoCgHRmd8Y9mDfA=";
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};
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postPatch = ''
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substituteInPlace pyproject.toml \
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--replace-fail "versioneer[toml]==0.28" "versioneer[toml]"
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'';
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build-system = [
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setuptools
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versioneer
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];
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dependencies = [
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dask
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pandas
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pyarrow
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];
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pythonImportsCheck = [ "dask_expr" ];
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nativeCheckInputs = [
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jinja2
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pytestCheckHook
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xarray
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];
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__darwinAllowLocalNetworking = true;
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meta = {
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description = "Rewrite of Dask DataFrame that includes query optimization and generally improved organization";
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homepage = "https://github.com/dask/dask-expr";
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license = lib.licenses.bsd3;
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maintainers = with lib.maintainers; [ GaetanLepage ];
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};
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}
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@@ -1,46 +1,34 @@
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{
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lib,
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buildPythonPackage,
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fetchFromGitHub,
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# build-system
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setuptools-scm,
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# dependencies
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cloudpickle,
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dask,
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distributed,
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fetchPypi,
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multipledispatch,
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pytestCheckHook,
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pythonOlder,
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scikit-learn,
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scipy,
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setuptools-scm,
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sparse,
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dask,
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# tests
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pytest-xdist,
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pytestCheckHook,
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}:
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buildPythonPackage rec {
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pname = "dask-glm";
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version = "0.3.2";
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pyproject = true;
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format = "setuptools";
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src = fetchFromGitHub {
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owner = "dask";
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repo = "dask-glm";
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tag = version;
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hash = "sha256-q98QMmw1toashimS16of54cgZgIPqkua3xGD1FZ1nTc=";
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disabled = pythonOlder "3.7";
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src = fetchPypi {
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inherit pname version;
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hash = "sha256-yUelZoZmmKAdeZeK5zIzy16DitXq1ghRQ1gsXpMLmko=";
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};
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# ValueError: The truth value of an empty array is ambiguous. Use `array.size > 0` to check that an array is not empty.
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postPatch = ''
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substituteInPlace dask_glm/utils.py \
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--replace-fail "if arr:" "if (arr is not None) and (arr.size > 0):"
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'';
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nativeBuildInputs = [ setuptools-scm ];
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build-system = [ setuptools-scm ];
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dependencies = [
|
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propagatedBuildInputs = [
|
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cloudpickle
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distributed
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multipledispatch
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@@ -50,24 +38,30 @@ buildPythonPackage rec {
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] ++ dask.optional-dependencies.array;
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nativeCheckInputs = [
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pytest-xdist
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sparse
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pytestCheckHook
|
||||
];
|
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|
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pythonImportsCheck = [ "dask_glm" ];
|
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|
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disabledTestPaths = [
|
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# Circular dependency with dask-ml
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"dask_glm/tests/test_estimators.py"
|
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# Test tries to imort an obsolete method
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"dask_glm/tests/test_utils.py"
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];
|
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|
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disabledTests = [
|
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# ValueError: <class 'bool'> can be computed for one-element arrays only.
|
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"test_dot_with_sparse"
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# missing fixture with distributed>=2022.8.0
|
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"test_determinism_distributed"
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];
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|
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__darwinAllowLocalNetworking = true;
|
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|
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meta = {
|
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meta = with lib; {
|
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description = "Generalized Linear Models with Dask";
|
||||
homepage = "https://github.com/dask/dask-glm/";
|
||||
changelog = "https://github.com/dask/dask-glm/releases/tag/${version}";
|
||||
license = lib.licenses.bsd3;
|
||||
maintainers = with lib.maintainers; [ GaetanLepage ];
|
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license = licenses.bsd3;
|
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maintainers = [ ];
|
||||
};
|
||||
}
|
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|
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@@ -10,7 +10,6 @@
|
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# dependencies
|
||||
boost-histogram,
|
||||
dask,
|
||||
dask-awkward,
|
||||
|
||||
# tests
|
||||
pytestCheckHook,
|
||||
@@ -18,14 +17,14 @@
|
||||
|
||||
buildPythonPackage rec {
|
||||
pname = "dask-histogram";
|
||||
version = "2025.2.0";
|
||||
version = "2024.12.1";
|
||||
pyproject = true;
|
||||
|
||||
src = fetchFromGitHub {
|
||||
owner = "dask-contrib";
|
||||
repo = "dask-histogram";
|
||||
tag = version;
|
||||
hash = "sha256-5Ec/qzVc/7LDG6SJym1e76BbxmbVjKKQHckwtTs1+6M=";
|
||||
hash = "sha256-chznfEsMFuIioIlTz6uNpVAkjMMoMXjS62R4luKxVZQ=";
|
||||
};
|
||||
|
||||
build-system = [
|
||||
@@ -36,7 +35,6 @@ buildPythonPackage rec {
|
||||
dependencies = [
|
||||
boost-histogram
|
||||
dask
|
||||
dask-awkward
|
||||
];
|
||||
|
||||
nativeCheckInputs = [ pytestCheckHook ];
|
||||
@@ -46,7 +44,7 @@ buildPythonPackage rec {
|
||||
meta = {
|
||||
description = "Histograms with task scheduling";
|
||||
homepage = "https://dask-histogram.readthedocs.io/";
|
||||
changelog = "https://github.com/dask-contrib/dask-histogram/releases/tag/${version}";
|
||||
changelog = "https://github.com/dask-contrib/dask-histogram/releases/tag/${src.tag}";
|
||||
license = with lib.licenses; [ bsd3 ];
|
||||
maintainers = with lib.maintainers; [ veprbl ];
|
||||
};
|
||||
|
||||
@@ -1,21 +1,15 @@
|
||||
{
|
||||
lib,
|
||||
buildPythonPackage,
|
||||
pythonOlder,
|
||||
fetchFromGitHub,
|
||||
|
||||
# build-system
|
||||
setuptools,
|
||||
setuptools-scm,
|
||||
|
||||
# dependencies
|
||||
dask,
|
||||
numpy,
|
||||
scipy,
|
||||
pandas,
|
||||
pims,
|
||||
|
||||
# tests
|
||||
pyarrow,
|
||||
pytestCheckHook,
|
||||
scikit-image,
|
||||
}:
|
||||
@@ -25,6 +19,8 @@ buildPythonPackage rec {
|
||||
version = "2024.5.3";
|
||||
pyproject = true;
|
||||
|
||||
disabled = pythonOlder "3.9";
|
||||
|
||||
src = fetchFromGitHub {
|
||||
owner = "dask";
|
||||
repo = "dask-image";
|
||||
@@ -32,11 +28,6 @@ buildPythonPackage rec {
|
||||
hash = "sha256-kXCAqJ2Zgo/2Khvo2YcK+n4oGM219GyQ2Hsq9re1Lac=";
|
||||
};
|
||||
|
||||
postPatch = ''
|
||||
substituteInPlace dask_image/ndinterp/__init__.py \
|
||||
--replace-fail "out_bounds.ptp(axis=1)" "np.ptp(out_bounds, axis=1)"
|
||||
'';
|
||||
|
||||
build-system = [
|
||||
setuptools
|
||||
setuptools-scm
|
||||
@@ -51,27 +42,15 @@ buildPythonPackage rec {
|
||||
];
|
||||
|
||||
nativeCheckInputs = [
|
||||
pyarrow
|
||||
pytestCheckHook
|
||||
scikit-image
|
||||
];
|
||||
|
||||
pythonImportsCheck = [ "dask_image" ];
|
||||
|
||||
disabledTests = [
|
||||
# The following tests are from 'tests/test_dask_image/test_ndmeasure/test_find_objects.py' and
|
||||
# fail because of errrors on numpy slices
|
||||
# AttributeError: 'str' object has no attribute 'start'
|
||||
"test_find_objects"
|
||||
"test_3d_find_objects"
|
||||
# AssertionError (comparing slices)
|
||||
"test_find_objects_with_empty_chunks"
|
||||
];
|
||||
|
||||
meta = {
|
||||
description = "Distributed image processing";
|
||||
homepage = "https://github.com/dask/dask-image";
|
||||
changelog = "https://github.com/dask/dask-image/releases/tag/v${version}";
|
||||
license = lib.licenses.bsdOriginal;
|
||||
maintainers = with lib.maintainers; [ GaetanLepage ];
|
||||
};
|
||||
|
||||
@@ -3,13 +3,14 @@
|
||||
stdenv,
|
||||
buildPythonPackage,
|
||||
fetchFromGitHub,
|
||||
fetchpatch,
|
||||
|
||||
# build-system
|
||||
hatch-vcs,
|
||||
hatchling,
|
||||
setuptools-scm,
|
||||
|
||||
# dependencies
|
||||
dask-expr,
|
||||
dask-glm,
|
||||
distributed,
|
||||
multipledispatch,
|
||||
@@ -28,23 +29,25 @@
|
||||
|
||||
buildPythonPackage rec {
|
||||
pname = "dask-ml";
|
||||
version = "2025.1.0";
|
||||
version = "2024.4.4";
|
||||
pyproject = true;
|
||||
|
||||
src = fetchFromGitHub {
|
||||
owner = "dask";
|
||||
repo = "dask-ml";
|
||||
tag = "v${version}";
|
||||
hash = "sha256-DHxx0LFuJmGWYuG/WGHj+a5XHAEekBmlHUUb90rl2IY=";
|
||||
hash = "sha256-ZiBpCk3b4Tk0Hwb4uapJLEx+Nb/qHFROCnkBTNGDzoU=";
|
||||
};
|
||||
|
||||
build-system = [
|
||||
hatch-vcs
|
||||
hatchling
|
||||
setuptools-scm
|
||||
];
|
||||
|
||||
dependencies =
|
||||
[
|
||||
dask-expr
|
||||
dask-glm
|
||||
distributed
|
||||
multipledispatch
|
||||
@@ -70,14 +73,39 @@ buildPythonPackage rec {
|
||||
pytestCheckHook
|
||||
];
|
||||
|
||||
disabledTestPaths = [
|
||||
# AttributeError: module 'numpy' has no attribute 'product'
|
||||
"tests/test_svd.py"
|
||||
];
|
||||
disabledTestPaths =
|
||||
[
|
||||
# AttributeError: 'csr_matrix' object has no attribute 'A'
|
||||
# Fixed in https://github.com/dask/dask-ml/pull/996
|
||||
"tests/test_svd.py"
|
||||
|
||||
# Tests fail with dask>=0.11.2
|
||||
# RuntimeError: Not enough arguments provided
|
||||
# Reported in https://github.com/dask/dask-ml/issues/1003
|
||||
"tests/model_selection/test_incremental.py"
|
||||
]
|
||||
++ lib.optionals stdenv.isDarwin [
|
||||
# RuntimeError: Not enough arguments provided: missing keys
|
||||
"tests/model_selection/test_hyperband.py"
|
||||
"tests/model_selection/test_incremental.py"
|
||||
"tests/model_selection/test_incremental_warns.py"
|
||||
"tests/model_selection/test_successive_halving.py"
|
||||
];
|
||||
|
||||
disabledTests = [
|
||||
# AssertionError: Regex pattern did not match.
|
||||
"test_unknown_category_transform_array"
|
||||
# Flaky: `Arrays are not almost equal to 3 decimals` (although values do actually match)
|
||||
"test_whitening"
|
||||
|
||||
# Tests fail with dask>=0.11.2
|
||||
# RuntimeError: Not enough arguments provided
|
||||
# Reported in https://github.com/dask/dask-ml/issues/1003
|
||||
"test_basic"
|
||||
"test_hyperband_patience"
|
||||
"test_same_random_state_same_params"
|
||||
"test_search_patience_infeasible_tol"
|
||||
"test_sha_max_iter_and_metadata"
|
||||
"test_warns_decay_rate"
|
||||
"test_warns_decay_rate_wanted"
|
||||
];
|
||||
|
||||
__darwinAllowLocalNetworking = true;
|
||||
|
||||
@@ -1,5 +1,6 @@
|
||||
{
|
||||
lib,
|
||||
stdenv,
|
||||
buildPythonPackage,
|
||||
fetchFromGitHub,
|
||||
|
||||
@@ -26,127 +27,168 @@
|
||||
jinja2,
|
||||
|
||||
# tests
|
||||
arrow-cpp,
|
||||
dask-expr,
|
||||
hypothesis,
|
||||
pytest-asyncio,
|
||||
pytest-mock,
|
||||
pytest-rerunfailures,
|
||||
pytest-xdist,
|
||||
pytestCheckHook,
|
||||
versionCheckHook,
|
||||
}:
|
||||
|
||||
buildPythonPackage rec {
|
||||
pname = "dask";
|
||||
version = "2025.1.0";
|
||||
pyproject = true;
|
||||
let
|
||||
self = buildPythonPackage rec {
|
||||
pname = "dask";
|
||||
version = "2024.12.1";
|
||||
pyproject = true;
|
||||
|
||||
src = fetchFromGitHub {
|
||||
owner = "dask";
|
||||
repo = "dask";
|
||||
tag = version;
|
||||
hash = "sha256-KBqOyf471mNg3L9dYmR7IRSltEtC+VgC+6ptsoKgVmM=";
|
||||
};
|
||||
src = fetchFromGitHub {
|
||||
owner = "dask";
|
||||
repo = "dask";
|
||||
tag = version;
|
||||
hash = "sha256-QqvdldAHW2UYt1NXfk3Aa+oe97e+OpRbF8d6eKV3OJ4=";
|
||||
};
|
||||
|
||||
postPatch = ''
|
||||
# versioneer hack to set version of GitHub package
|
||||
echo "def get_versions(): return {'dirty': False, 'error': None, 'full-revisionid': None, 'version': '${version}'}" > dask/_version.py
|
||||
build-system = [ setuptools ];
|
||||
|
||||
substituteInPlace setup.py \
|
||||
--replace-fail "import versioneer" "" \
|
||||
--replace-fail "version=versioneer.get_version()," "version='${version}'," \
|
||||
--replace-fail "cmdclass=versioneer.get_cmdclass()," ""
|
||||
|
||||
substituteInPlace pyproject.toml \
|
||||
--replace-fail ', "versioneer[toml]==0.29"' "" \
|
||||
--replace-fail " --durations=10" "" \
|
||||
--replace-fail " --cov-config=pyproject.toml" "" \
|
||||
--replace-fail "\"-v" "\" "
|
||||
'';
|
||||
|
||||
build-system = [ setuptools ];
|
||||
|
||||
dependencies = [
|
||||
click
|
||||
cloudpickle
|
||||
fsspec
|
||||
packaging
|
||||
partd
|
||||
pyyaml
|
||||
importlib-metadata
|
||||
toolz
|
||||
];
|
||||
|
||||
optional-dependencies = lib.fix (self: {
|
||||
array = [ numpy ];
|
||||
complete =
|
||||
[
|
||||
pyarrow
|
||||
lz4
|
||||
]
|
||||
++ self.array
|
||||
++ self.dataframe
|
||||
++ self.distributed
|
||||
++ self.diagnostics;
|
||||
dataframe = [
|
||||
pandas
|
||||
pyarrow
|
||||
] ++ self.array;
|
||||
distributed = [ distributed ];
|
||||
diagnostics = [
|
||||
bokeh
|
||||
jinja2
|
||||
dependencies = [
|
||||
click
|
||||
cloudpickle
|
||||
fsspec
|
||||
packaging
|
||||
partd
|
||||
pyyaml
|
||||
importlib-metadata
|
||||
toolz
|
||||
];
|
||||
});
|
||||
|
||||
nativeCheckInputs =
|
||||
[
|
||||
hypothesis
|
||||
pytest-asyncio
|
||||
pytest-mock
|
||||
pytest-rerunfailures
|
||||
pytest-xdist
|
||||
pytestCheckHook
|
||||
versionCheckHook
|
||||
pyarrow
|
||||
]
|
||||
++ optional-dependencies.array
|
||||
++ optional-dependencies.dataframe;
|
||||
versionCheckProgramArg = [ "--version" ];
|
||||
optional-dependencies = lib.fix (self: {
|
||||
array = [ numpy ];
|
||||
complete =
|
||||
[
|
||||
pyarrow
|
||||
lz4
|
||||
]
|
||||
++ self.array
|
||||
++ self.dataframe
|
||||
++ self.distributed
|
||||
++ self.diagnostics;
|
||||
dataframe = [
|
||||
# dask-expr -> circular dependency with dask-expr
|
||||
numpy
|
||||
pandas
|
||||
];
|
||||
distributed = [ distributed ];
|
||||
diagnostics = [
|
||||
bokeh
|
||||
jinja2
|
||||
];
|
||||
});
|
||||
|
||||
pytestFlagsArray = [
|
||||
# Rerun failed tests up to three times
|
||||
"--reruns 3"
|
||||
# Don't run tests that require network access
|
||||
"-m 'not network'"
|
||||
];
|
||||
nativeCheckInputs =
|
||||
[
|
||||
dask-expr
|
||||
pytestCheckHook
|
||||
pytest-rerunfailures
|
||||
pytest-xdist
|
||||
# from panda[test]
|
||||
hypothesis
|
||||
pytest-asyncio
|
||||
]
|
||||
++ self.optional-dependencies.array
|
||||
++ self.optional-dependencies.dataframe
|
||||
++ lib.optionals (!arrow-cpp.meta.broken) [
|
||||
# support is sparse on aarch64
|
||||
pyarrow
|
||||
];
|
||||
|
||||
disabledTests = [
|
||||
# UserWarning: Insufficient elements for `head`. 10 elements requested, only 5 elements available. Try passing larger `npartitions` to `head`.
|
||||
"test_set_index_head_nlargest_string"
|
||||
];
|
||||
dontUseSetuptoolsCheck = true;
|
||||
|
||||
__darwinAllowLocalNetworking = true;
|
||||
postPatch = ''
|
||||
# versioneer hack to set version of GitHub package
|
||||
echo "def get_versions(): return {'dirty': False, 'error': None, 'full-revisionid': None, 'version': '${version}'}" > dask/_version.py
|
||||
|
||||
pythonImportsCheck = [
|
||||
"dask"
|
||||
"dask.bag"
|
||||
"dask.bytes"
|
||||
"dask.diagnostics"
|
||||
substituteInPlace setup.py \
|
||||
--replace-fail "import versioneer" "" \
|
||||
--replace-fail "version=versioneer.get_version()," "version='${version}'," \
|
||||
--replace-fail "cmdclass=versioneer.get_cmdclass()," ""
|
||||
|
||||
# Requires the `dask.optional-dependencies.array` that are only in `nativeCheckInputs`
|
||||
"dask.array"
|
||||
# Requires the `dask.optional-dependencies.dataframe` that are only in `nativeCheckInputs`
|
||||
"dask.dataframe"
|
||||
"dask.dataframe.io"
|
||||
"dask.dataframe.tseries"
|
||||
];
|
||||
substituteInPlace pyproject.toml \
|
||||
--replace-fail ', "versioneer[toml]==0.29"' "" \
|
||||
--replace-fail " --durations=10" "" \
|
||||
--replace-fail " --cov-config=pyproject.toml" "" \
|
||||
--replace-fail "\"-v" "\" "
|
||||
'';
|
||||
|
||||
meta = {
|
||||
description = "Minimal task scheduling abstraction";
|
||||
mainProgram = "dask";
|
||||
homepage = "https://dask.org/";
|
||||
changelog = "https://docs.dask.org/en/latest/changelog.html";
|
||||
license = lib.licenses.bsd3;
|
||||
maintainers = with lib.maintainers; [ GaetanLepage ];
|
||||
pytestFlagsArray = [
|
||||
# Rerun failed tests up to three times
|
||||
"--reruns 3"
|
||||
# Don't run tests that require network access
|
||||
"-m 'not network'"
|
||||
];
|
||||
|
||||
disabledTests =
|
||||
lib.optionals stdenv.hostPlatform.isDarwin [
|
||||
# Test requires features of python3Packages.psutil that are
|
||||
# blocked in sandboxed-builds
|
||||
"test_auto_blocksize_csv"
|
||||
# AttributeError: 'str' object has no attribute 'decode'
|
||||
"test_read_dir_nometa"
|
||||
]
|
||||
++ lib.optionals (stdenv.hostPlatform.isDarwin && stdenv.hostPlatform.isAarch64) [
|
||||
# concurrent.futures.process.BrokenProcessPool: A process in the process pool terminated abpruptly...
|
||||
"test_foldby_tree_reduction"
|
||||
"test_to_bag"
|
||||
]
|
||||
++ [
|
||||
# https://github.com/dask/dask/issues/10347#issuecomment-1589683941
|
||||
"test_concat_categorical"
|
||||
# AttributeError: 'ArrowStringArray' object has no attribute 'tobytes'. Did you mean: 'nbytes'?
|
||||
"test_dot"
|
||||
"test_dot_nan"
|
||||
"test_merge_column_with_nulls"
|
||||
# FileNotFoundError: [Errno 2] No such file or directory: '/build/tmp301jryv_/createme/0.part'
|
||||
"test_to_csv_nodir"
|
||||
"test_to_json_results"
|
||||
# FutureWarning: Those tests should be working fine when pandas will have been upgraded to 2.1.1
|
||||
"test_apply"
|
||||
"test_apply_infer_columns"
|
||||
];
|
||||
|
||||
__darwinAllowLocalNetworking = true;
|
||||
|
||||
pythonImportsCheck = [
|
||||
"dask"
|
||||
"dask.bag"
|
||||
"dask.bytes"
|
||||
"dask.diagnostics"
|
||||
];
|
||||
|
||||
doCheck = false;
|
||||
|
||||
# Enable tests via passthru to avoid cyclic dependency with dask-expr.
|
||||
passthru.tests = {
|
||||
check = self.overridePythonAttrs (old: {
|
||||
doCheck = true;
|
||||
pythonImportsCheck = [
|
||||
# Requires the `dask.optional-dependencies.array` that are only in `nativeCheckInputs`
|
||||
"dask.array"
|
||||
# Requires the `dask.optional-dependencies.dataframe` that are only in `nativeCheckInputs`
|
||||
"dask.dataframe"
|
||||
"dask.dataframe.io"
|
||||
"dask.dataframe.tseries"
|
||||
] ++ old.pythonImportsCheck;
|
||||
});
|
||||
};
|
||||
|
||||
meta = {
|
||||
description = "Minimal task scheduling abstraction";
|
||||
mainProgram = "dask";
|
||||
homepage = "https://dask.org/";
|
||||
changelog = "https://docs.dask.org/en/latest/changelog.html";
|
||||
license = lib.licenses.bsd3;
|
||||
maintainers = with lib.maintainers; [ GaetanLepage ];
|
||||
};
|
||||
};
|
||||
}
|
||||
in
|
||||
self
|
||||
|
||||
@@ -1,32 +1,27 @@
|
||||
{
|
||||
lib,
|
||||
stdenv,
|
||||
buildPythonPackage,
|
||||
fetchFromGitHub,
|
||||
|
||||
# build-system
|
||||
setuptools,
|
||||
|
||||
# dependencies
|
||||
anytree,
|
||||
buildPythonPackage,
|
||||
setuptools,
|
||||
cached-property,
|
||||
cgen,
|
||||
click,
|
||||
codepy,
|
||||
distributed,
|
||||
fetchFromGitHub,
|
||||
gcc,
|
||||
llvmPackages,
|
||||
matplotlib,
|
||||
multidict,
|
||||
nbval,
|
||||
psutil,
|
||||
py-cpuinfo,
|
||||
scipy,
|
||||
sympy,
|
||||
|
||||
# tests
|
||||
gcc,
|
||||
matplotlib,
|
||||
pytest-xdist,
|
||||
pytestCheckHook,
|
||||
pythonOlder,
|
||||
scipy,
|
||||
sympy,
|
||||
}:
|
||||
|
||||
buildPythonPackage rec {
|
||||
@@ -34,6 +29,8 @@ buildPythonPackage rec {
|
||||
version = "4.8.11";
|
||||
pyproject = true;
|
||||
|
||||
disabled = pythonOlder "3.8";
|
||||
|
||||
src = fetchFromGitHub {
|
||||
owner = "devitocodes";
|
||||
repo = "devito";
|
||||
@@ -45,9 +42,6 @@ buildPythonPackage rec {
|
||||
postPatch = ''
|
||||
substituteInPlace requirements-testing.txt \
|
||||
--replace-fail 'pooch; python_version >= "3.8"' "pooch"
|
||||
|
||||
substituteInPlace tests/test_builtins.py \
|
||||
--replace-fail "from scipy.misc import ascent" "from scipy.datasets import ascent"
|
||||
'';
|
||||
|
||||
pythonRemoveDeps = [ "pip" ];
|
||||
@@ -105,10 +99,6 @@ buildPythonPackage rec {
|
||||
"test_stability_mpi"
|
||||
"test_subdomainset_mpi"
|
||||
"test_subdomains_mpi"
|
||||
|
||||
# Download dataset from the internet
|
||||
"test_gs_2d_float"
|
||||
"test_gs_2d_int"
|
||||
]
|
||||
++ lib.optionals (stdenv.hostPlatform.isLinux && stdenv.hostPlatform.isAarch64) [
|
||||
# FAILED tests/test_unexpansion.py::Test2Pass::test_v0 - assert False
|
||||
|
||||
@@ -2,42 +2,36 @@
|
||||
lib,
|
||||
buildPythonPackage,
|
||||
fetchFromGitHub,
|
||||
|
||||
# build-system
|
||||
hatch-vcs,
|
||||
hatchling,
|
||||
|
||||
# dependencies
|
||||
setuptools,
|
||||
setuptools-scm,
|
||||
matplotlib,
|
||||
mplhep-data,
|
||||
numpy,
|
||||
packaging,
|
||||
uhi,
|
||||
|
||||
# tests
|
||||
hist,
|
||||
pytest-mock,
|
||||
pytest-mpl,
|
||||
pytestCheckHook,
|
||||
scipy,
|
||||
pytest-mpl,
|
||||
pytest-mock,
|
||||
uproot,
|
||||
hist,
|
||||
}:
|
||||
|
||||
buildPythonPackage rec {
|
||||
pname = "mplhep";
|
||||
version = "0.3.56";
|
||||
version = "0.3.55";
|
||||
pyproject = true;
|
||||
|
||||
src = fetchFromGitHub {
|
||||
owner = "scikit-hep";
|
||||
repo = "mplhep";
|
||||
tag = "v${version}";
|
||||
hash = "sha256-sMJpJUEtIqmu7kCgZp43t9XLy/6nkDgKcxC4nFb+1po=";
|
||||
hash = "sha256-7YkrrH9Bfn3ctjv+H6TXEDE8yS/wnjO7umuHIXeYTDU=";
|
||||
};
|
||||
|
||||
build-system = [
|
||||
hatch-vcs
|
||||
hatchling
|
||||
setuptools
|
||||
setuptools-scm
|
||||
];
|
||||
|
||||
dependencies = [
|
||||
@@ -49,12 +43,12 @@ buildPythonPackage rec {
|
||||
];
|
||||
|
||||
nativeCheckInputs = [
|
||||
hist
|
||||
pytest-mock
|
||||
pytest-mpl
|
||||
pytestCheckHook
|
||||
scipy
|
||||
pytest-mpl
|
||||
pytest-mock
|
||||
uproot
|
||||
hist
|
||||
];
|
||||
|
||||
disabledTests = [
|
||||
@@ -68,7 +62,6 @@ buildPythonPackage rec {
|
||||
meta = {
|
||||
description = "Extended histogram plots on top of matplotlib and HEP compatible styling similar to current collaboration requirements (ROOT)";
|
||||
homepage = "https://github.com/scikit-hep/mplhep";
|
||||
changelog = "https://github.com/scikit-hep/mplhep/releases/tag/v${version}";
|
||||
license = with lib.licenses; [ mit ];
|
||||
maintainers = with lib.maintainers; [ veprbl ];
|
||||
};
|
||||
|
||||
@@ -1,36 +1,34 @@
|
||||
{
|
||||
lib,
|
||||
buildPythonPackage,
|
||||
fetchFromGitHub,
|
||||
|
||||
# build-system
|
||||
hatchling,
|
||||
|
||||
# optional-dependencies
|
||||
# cudf,
|
||||
dask,
|
||||
dask-expr,
|
||||
duckdb,
|
||||
fetchFromGitHub,
|
||||
hatchling,
|
||||
hypothesis,
|
||||
# modin,
|
||||
pandas,
|
||||
polars,
|
||||
pyarrow,
|
||||
|
||||
# tests
|
||||
duckdb,
|
||||
hypothesis,
|
||||
pytest-env,
|
||||
pytestCheckHook,
|
||||
pythonOlder,
|
||||
}:
|
||||
|
||||
buildPythonPackage rec {
|
||||
pname = "narwhals";
|
||||
version = "1.25.2";
|
||||
version = "1.22.0";
|
||||
pyproject = true;
|
||||
|
||||
disabled = pythonOlder "3.8";
|
||||
|
||||
src = fetchFromGitHub {
|
||||
owner = "narwhals-dev";
|
||||
repo = "narwhals";
|
||||
tag = "v${version}";
|
||||
hash = "sha256-cp/Ang5RXLpgTdpOHRKz9fGN9D+SgFC5KhF3ukf8G+w=";
|
||||
hash = "sha256-I6nJJiiW1v04YH70OPxXKeO80N52nnCPKRzJLILEWmw=";
|
||||
};
|
||||
|
||||
build-system = [
|
||||
@@ -41,6 +39,7 @@ buildPythonPackage rec {
|
||||
# cudf = [ cudf ];
|
||||
dask = [
|
||||
dask
|
||||
dask-expr
|
||||
];
|
||||
# modin = [ modin ];
|
||||
pandas = [ pandas ];
|
||||
@@ -65,7 +64,7 @@ buildPythonPackage rec {
|
||||
meta = {
|
||||
description = "Lightweight and extensible compatibility layer between dataframe libraries";
|
||||
homepage = "https://github.com/narwhals-dev/narwhals";
|
||||
changelog = "https://github.com/narwhals-dev/narwhals/releases/tag/v${version}";
|
||||
changelog = "https://github.com/narwhals-dev/narwhals/releases/tag/${src.tag}";
|
||||
license = lib.licenses.mit;
|
||||
maintainers = with lib.maintainers; [ fab ];
|
||||
};
|
||||
|
||||
@@ -1,21 +1,15 @@
|
||||
{
|
||||
lib,
|
||||
buildPythonPackage,
|
||||
fetchFromGitHub,
|
||||
|
||||
# build-system
|
||||
setuptools,
|
||||
setuptools-scm,
|
||||
|
||||
# dependencies
|
||||
dask,
|
||||
fetchPypi,
|
||||
numba,
|
||||
numpy,
|
||||
pytest7CheckHook,
|
||||
pythonOlder,
|
||||
setuptools,
|
||||
setuptools-scm,
|
||||
scipy,
|
||||
|
||||
# tests
|
||||
dask,
|
||||
pytest-cov-stub,
|
||||
pytestCheckHook,
|
||||
}:
|
||||
|
||||
buildPythonPackage rec {
|
||||
@@ -23,13 +17,18 @@ buildPythonPackage rec {
|
||||
version = "0.15.5";
|
||||
pyproject = true;
|
||||
|
||||
src = fetchFromGitHub {
|
||||
owner = "pydata";
|
||||
repo = "sparse";
|
||||
tag = version;
|
||||
hash = "sha256-W4rcq7G/bQsT9oTLieOzWNst5LnIAelRMbm+uUPeQgs=";
|
||||
disabled = pythonOlder "3.8";
|
||||
|
||||
src = fetchPypi {
|
||||
inherit pname version;
|
||||
hash = "sha256-THbODJb1zVwxt+eeZQ8AIkJMKxbwXxAEnpxjge5L4mY=";
|
||||
};
|
||||
|
||||
postPatch = ''
|
||||
substituteInPlace pytest.ini \
|
||||
--replace-fail "--cov-report term-missing --cov-report html --cov-report=xml --cov-report=term --cov sparse --cov-config .coveragerc --junitxml=junit/test-results.xml" ""
|
||||
'';
|
||||
|
||||
build-system = [
|
||||
setuptools
|
||||
setuptools-scm
|
||||
@@ -43,23 +42,22 @@ buildPythonPackage rec {
|
||||
|
||||
nativeCheckInputs = [
|
||||
dask
|
||||
pytest-cov-stub
|
||||
pytestCheckHook
|
||||
pytest7CheckHook
|
||||
];
|
||||
|
||||
pythonImportsCheck = [ "sparse" ];
|
||||
|
||||
meta = {
|
||||
pytestFlagsArray = [
|
||||
"-W"
|
||||
"ignore::pytest.PytestRemovedIn8Warning"
|
||||
];
|
||||
|
||||
meta = with lib; {
|
||||
description = "Sparse n-dimensional arrays computations";
|
||||
homepage = "https://sparse.pydata.org/";
|
||||
changelog = "https://sparse.pydata.org/en/stable/changelog.html";
|
||||
downloadPage = "https://github.com/pydata/sparse/releases/tag/${version}";
|
||||
license = lib.licenses.bsd3;
|
||||
maintainers = with lib.maintainers; [ GaetanLepage ];
|
||||
badPlatforms = [
|
||||
# Most tests fail with: Fatal Python error: Segmentation fault
|
||||
# numba/typed/typedlist.py", line 344 in append
|
||||
"aarch64-linux"
|
||||
];
|
||||
license = licenses.bsd3;
|
||||
maintainers = [ ];
|
||||
};
|
||||
}
|
||||
|
||||
@@ -1,24 +1,23 @@
|
||||
{
|
||||
lib,
|
||||
buildPythonPackage,
|
||||
fetchFromGitHub,
|
||||
|
||||
# build-system
|
||||
pythonOlder,
|
||||
fetchPypi,
|
||||
setuptools,
|
||||
|
||||
# dependencies
|
||||
confluent-kafka,
|
||||
dask,
|
||||
dask-expr,
|
||||
distributed,
|
||||
flaky,
|
||||
graphviz,
|
||||
networkx,
|
||||
pytest-asyncio,
|
||||
pytestCheckHook,
|
||||
requests,
|
||||
six,
|
||||
toolz,
|
||||
tornado,
|
||||
zict,
|
||||
|
||||
# tests
|
||||
dask,
|
||||
distributed,
|
||||
flaky,
|
||||
pandas,
|
||||
pyarrow,
|
||||
pytestCheckHook,
|
||||
}:
|
||||
|
||||
buildPythonPackage rec {
|
||||
@@ -26,16 +25,17 @@ buildPythonPackage rec {
|
||||
version = "0.6.4";
|
||||
pyproject = true;
|
||||
|
||||
src = fetchFromGitHub {
|
||||
owner = "python-streamz";
|
||||
repo = "streamz";
|
||||
tag = version;
|
||||
hash = "sha256-lSb3gl+TSIzz4BZzxH8zXu74HvzSntOAoVQUUJKIEvA=";
|
||||
disabled = pythonOlder "3.6";
|
||||
|
||||
src = fetchPypi {
|
||||
inherit pname version;
|
||||
hash = "sha256-VXfWkEwuxInBQVQJV3IQXgGVRkiBmYfUZCBMbjyWNPM=";
|
||||
};
|
||||
|
||||
build-system = [ setuptools ];
|
||||
|
||||
dependencies = [
|
||||
networkx
|
||||
six
|
||||
toolz
|
||||
tornado
|
||||
@@ -43,12 +43,15 @@ buildPythonPackage rec {
|
||||
];
|
||||
|
||||
nativeCheckInputs = [
|
||||
confluent-kafka
|
||||
dask
|
||||
dask-expr
|
||||
distributed
|
||||
flaky
|
||||
pandas
|
||||
pyarrow
|
||||
graphviz
|
||||
pytest-asyncio
|
||||
pytestCheckHook
|
||||
requests
|
||||
];
|
||||
|
||||
pythonImportsCheck = [ "streamz" ];
|
||||
@@ -60,17 +63,24 @@ buildPythonPackage rec {
|
||||
"test_partition_then_scatter_sync"
|
||||
"test_sync"
|
||||
"test_sync_2"
|
||||
|
||||
# Test fail in the sandbox
|
||||
"test_tcp_async"
|
||||
"test_tcp"
|
||||
"test_partition_timeout"
|
||||
# Tests are flaky
|
||||
"test_from_iterable"
|
||||
"test_buffer"
|
||||
];
|
||||
|
||||
__darwinAllowLocalNetworking = true;
|
||||
disabledTestPaths = [
|
||||
# Disable kafka tests
|
||||
"streamz/tests/test_kafka.py"
|
||||
];
|
||||
|
||||
meta = {
|
||||
meta = with lib; {
|
||||
description = "Pipelines to manage continuous streams of data";
|
||||
homepage = "https://github.com/python-streamz/streamz";
|
||||
license = lib.licenses.bsd3;
|
||||
maintainers = with lib.maintainers; [ GaetanLepage ];
|
||||
license = licenses.bsd3;
|
||||
maintainers = [ ];
|
||||
};
|
||||
}
|
||||
|
||||
@@ -142,7 +142,6 @@ mapAliases ({
|
||||
cx_Freeze = cx-freeze; # added 2023-08-02
|
||||
cx_oracle = cx-oracle; # added 2024-01-03
|
||||
d2to1 = throw "d2to1 is archived and no longer works with setuptools v68"; # added 2023-07-30
|
||||
dask-expr = throw "dask-expr was removed because its features are available in dask"; # added 2025-02-07
|
||||
dask-xgboost = throw "dask-xgboost was removed because its features are available in xgboost"; # added 2022-05-24
|
||||
dash-renderer = throw "dash-renderer has been removed since it is abandoned"; # added 2025-01-01
|
||||
dateutil = python-dateutil; # added 2021-07-03
|
||||
|
||||
@@ -2961,6 +2961,8 @@ self: super: with self; {
|
||||
|
||||
dask-awkward = callPackage ../development/python-modules/dask-awkward { };
|
||||
|
||||
dask-expr = callPackage ../development/python-modules/dask-expr { };
|
||||
|
||||
dask-gateway = callPackage ../development/python-modules/dask-gateway { };
|
||||
|
||||
dask-gateway-server = callPackage ../development/python-modules/dask-gateway-server { };
|
||||
|
||||
Reference in New Issue
Block a user