samblaster: init 0.1.24

2020-07-05 09:10:21 +10:00
parent 6eeb612a9b
commit 2ada3b5d3e
2 changed files with 28 additions and 0 deletions
@@ -0,0 +1,26 @@
+{ stdenv, fetchFromGitHub }:
+
+stdenv.mkDerivation rec {
+  pname = "samblaster";
+  version = "0.1.24";
+
+  src = fetchFromGitHub {
+    owner = "GregoryFaust";
+    repo = "samblaster";
+    rev = "v.${version}";
+    sha256 = "0iv2ddfw8363vb2x8gr3p8g88whb6mb9m0pf71i2cqsbv6jghap7";
+  };
+
+  installPhase = ''
+    mkdir -p $out/bin
+    cp samblaster $out/bin
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Tool for marking duplicates and extracting discordant/split reads from SAM/BAM files";
+    maintainers = with maintainers; [ jbedo ];
+    license = licenses.mit;
+    homepage = "https://github.com/GregoryFaust/samblaster";
+    platforms = platforms.x86_64;
+  };
+}
@@ -24919,6 +24919,8 @@ in
    mpi = true;
  });

+  samblaster = callPackage ../applications/science/biology/samblaster { };
+
  samtools = callPackage ../applications/science/biology/samtools { };
  samtools_0_1_19 = callPackage ../applications/science/biology/samtools/samtools_0_1_19.nix {
    stdenv = gccStdenv;