Merge pull request #314941 from bcdarwin/update-python3-dicom2nifti

python312Packages.dicom2nifti: 2.4.8 -> 2.4.11
This commit is contained in:
Peder Bergebakken Sundt
2024-06-08 00:34:15 +02:00
committed by GitHub
@@ -14,33 +14,36 @@
buildPythonPackage rec {
pname = "dicom2nifti";
version = "2.4.8";
format = "setuptools";
version = "2.4.11";
pyproject = true;
disabled = pythonOlder "3.6";
# no tests in PyPI dist
src = fetchFromGitHub {
owner = "icometrix";
repo = pname;
rev = version;
hash = "sha256-2Pspxdeu3pHwXpbjS6bQQnvdeMuITRwYarPuLlmNcv8";
rev = "refs/tags/${version}";
hash = "sha256-/JauQZcCQDl1ukcSE3YPbf1SyhVxDNJUlqnFwdlwYQY=";
};
build-system = [ setuptools ];
propagatedBuildInputs = [
gdcm
nibabel
numpy
pydicom
scipy
setuptools
];
# python-gdcm just builds the python interface provided by the "gdcm" package, so
# we should be able to replace "python-gdcm" with "gdcm" but this doesn't work
# (similar to https://github.com/NixOS/nixpkgs/issues/84774)
postPatch = ''
substituteInPlace setup.py --replace "python-gdcm" ""
substituteInPlace tests/test_generic.py --replace "from common" "from dicom2nifti.common"
substituteInPlace setup.py --replace-fail "python-gdcm" ""
substituteInPlace tests/test_generic.py --replace-fail "from common" "from dicom2nifti.common"
substituteInPlace tests/test_ge.py --replace-fail "import convert_generic" "import dicom2nifti.convert_generic as convert_generic"
'';
nativeCheckInputs = [ pytestCheckHook ];