jabref: 5.13 -> 6.0-alpha.3 (#370839)
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@@ -1,35 +1,43 @@
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{
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lib,
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stdenv,
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fetchurl,
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fetchFromGitHub,
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wrapGAppsHook3,
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makeDesktopItem,
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copyDesktopItems,
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makeShellWrapper,
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unzip,
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zip,
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xdg-utils,
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gtk3,
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jdk21,
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jdk25,
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openjfx25,
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gradle_8,
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gradle_9,
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python3,
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postgresql,
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jbang,
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}:
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let
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jdk = jdk21.override {
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enableJavaFX = true;
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openjfx_jdk = openjfx25;
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jdk = jdk25;
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openjfx = openjfx25;
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gradle = gradle_9;
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ltwaUrl = "https://www.issn.org/wp-content/uploads/2021/07/ltwa_20210702.csv";
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ltwa = fetchurl {
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url = ltwaUrl;
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hash = "sha256-jnS8Y9x8eg2L3L3RPnS6INTs19mEtwzfNIjJUw6HtIY=";
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};
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# "Deprecated Gradle features were used in this build, making it incompatible with Gradle 9.0."
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gradle = gradle_8;
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in
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stdenv.mkDerivation rec {
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version = "5.13";
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version = "6.0-alpha.3";
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pname = "jabref";
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src = fetchFromGitHub {
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owner = "JabRef";
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repo = "jabref";
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rev = "v${version}";
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hash = "sha256-inE2FXAaEEiq7343KwtjEiTEHLtn01AzP0foTpsLoAw=";
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tag = "v${version}";
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hash = "sha256-ZX4LQe8xKZCDJqVh+L9BHkJK82Pz/qPhlaE8SrAin6o=";
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fetchSubmodules = true;
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};
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@@ -38,7 +46,7 @@ stdenv.mkDerivation rec {
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comment = meta.description;
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name = "JabRef";
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desktopName = "JabRef";
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genericName = "Bibliography manager";
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genericName = "BibTex Editor";
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categories = [ "Office" ];
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icon = "jabref";
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exec = "JabRef %U";
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@@ -53,22 +61,42 @@ stdenv.mkDerivation rec {
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};
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postPatch = ''
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sed -i -e '/vendor/d' -e '/JavaLanguageVersion/s/24/25/' build-logic/src/main/kotlin/org.jabref.gradle.feature.compile.gradle.kts
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sed -i -e '/javafx-base/s/24.0.1/25/' build-support/src/main/java/*.java
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substituteInPlace build-support/src/main/java/*.java \
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--replace-fail 'JAVA 24' 'JAVA 25'
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sed -i -e '1a //REPOS file://${mitmCache}/https/repo.maven.apache.org/maven2,file://${mitmCache}/https/plugins.gradle.org/m2' build-support/src/main/java/*.java
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pushd jablib
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# Disable update check
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substituteInPlace src/main/java/org/jabref/preferences/JabRefPreferences.java \
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--replace 'VERSION_CHECK_ENABLED, Boolean.TRUE' \
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substituteInPlace src/main/java/org/jabref/logic/preferences/JabRefCliPreferences.java \
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--replace-fail 'VERSION_CHECK_ENABLED, Boolean.TRUE' \
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'VERSION_CHECK_ENABLED, Boolean.FALSE'
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# Find OpenOffice/LibreOffice binary
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substituteInPlace src/main/java/org/jabref/logic/openoffice/OpenOfficePreferences.java \
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--replace '/usr' '/run/current-system/sw'
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--replace-fail '/usr' '/run/current-system/sw'
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sed -i -e '/setOutputRedirector/d' src/main/java/org/jabref/logic/search/PostgreServer.java
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substituteInPlace build.gradle.kts \
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--replace-fail '${ltwaUrl}' 'file://${ltwa}'
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popd
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'';
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nativeBuildInputs = [
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jdk
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gradle
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(jbang.override { inherit jdk; })
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wrapGAppsHook3
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copyDesktopItems
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unzip
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zip
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makeShellWrapper
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];
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buildInputs = [
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@@ -92,62 +120,96 @@ stdenv.mkDerivation rec {
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install -dm755 $out/share/java/jabref
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install -Dm644 LICENSE $out/share/licenses/jabref/LICENSE
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install -Dm644 src/main/resources/icons/jabref.svg $out/share/pixmaps/jabref.svg
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install -Dm644 jabgui/src/main/resources/icons/jabref.svg $out/share/pixmaps/jabref.svg
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# script to support browser extensions
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install -Dm755 buildres/linux/jabrefHost.py $out/lib/jabrefHost.py
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install -Dm755 jabgui/buildres/linux/jabrefHost.py $out/lib/jabrefHost.py
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patchShebangs $out/lib/jabrefHost.py
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install -Dm644 buildres/linux/native-messaging-host/firefox/org.jabref.jabref.json $out/lib/mozilla/native-messaging-hosts/org.jabref.jabref.json
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install -Dm644 jabgui/buildres/linux/native-messaging-host/firefox/org.jabref.jabref.json $out/lib/mozilla/native-messaging-hosts/org.jabref.jabref.json
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sed -i -e "s|/opt/jabref|$out|" $out/lib/mozilla/native-messaging-hosts/org.jabref.jabref.json
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# Resources in the jar can't be found, workaround copied from AUR
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cp -r build/resources $out/share/java/jabref
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cp -r */build/resources $out/share/java/jabref
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tar xf build/distributions/JabRef-${version}.tar -C $out --strip-components=1
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DEFAULT_JVM_OPTS=$(sed -n -E "s/^DEFAULT_JVM_OPTS='(.*)'$/\1/p" $out/bin/JabRef | sed -e "s|\$APP_HOME|$out|g" -e 's/"//g')
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for tarball in */build/distributions/*.tar; do
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tar xf $tarball -C $out --strip-components=1
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done
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# Temp fix: openjfx doesn't build with webkit
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unzip $out/lib/javafx-web-*-*.jar libjfxwebkit.so -d $out/lib/
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# Use postgresql from nixpkgs since the bundled binary doesn't work on NixOS
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ARCH1=${if stdenv.isAarch64 then "arm64v8" else "amd64"}
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ARCH2=${if stdenv.isAarch64 then "arm_64" else "x86_64"}
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mkdir postgresql
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cd postgresql
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ln -s ${postgresql}/{lib,share} ./
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mkdir -p bin
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ln -s ${postgresql}/bin/{postgres,initdb} ./bin
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# Wrap pg_ctl to workaround https://github.com/NixOS/nixpkgs/issues/83770
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# Use custom wrap to workaround https://github.com/NixOS/nixpkgs/issues/330471
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makeShellWrapper ${postgresql}/bin/pg_ctl ./bin/pg_ctl \
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--add-flags '-o "-k /tmp"'
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chmod +x ./bin/pg_ctl
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jar=$(ls $out/lib/embedded-postgres-binaries-linux-$ARCH1-*.jar)
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tar -cJf postgres-linux-$ARCH2.txz *
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zip $jar postgres-linux-$ARCH2.txz
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cd ..
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runHook postInstall
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'';
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postFixup = ''
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rm $out/bin/*
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for bin in jabgui jabkit jabsrv-cli; do
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DEFAULT_JVM_OPTS=$(sed -n -E "s/^DEFAULT_JVM_OPTS='(.*)'$/\1/p" $out/bin/$bin | sed -e 's/"//g')
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MODULE_PATH=$(sed -n -E 's/^MODULE_PATH=(.*)$/\1/p' $out/bin/$bin | sed -e "s|\$APP_HOME|$out|g")
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MODULE=$(sed -n -E 's/\s*--module (.*) \\/\1/p' $out/bin/$bin)
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rm $out/bin/$bin*
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# put this in postFixup because some gappsWrapperArgs are generated in gappsWrapperArgsHook in preFixup
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makeWrapper ${jdk}/bin/java $out/bin/JabRef \
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"''${gappsWrapperArgs[@]}" \
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--suffix PATH : ${lib.makeBinPath [ xdg-utils ]} \
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--add-flags "-Djava.library.path=$out/lib/ --patch-module org.jabref=$out/share/java/jabref/resources/main" \
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--add-flags "$DEFAULT_JVM_OPTS"
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# put this in postFixup because some gappsWrapperArgs are generated in gappsWrapperArgsHook in preFixup
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makeWrapper ${jdk}/bin/java $out/bin/$bin \
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"''${gappsWrapperArgs[@]}" \
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--suffix PATH : ${
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lib.makeBinPath [
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xdg-utils
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postgresql
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]
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} \
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--add-flags "$DEFAULT_JVM_OPTS \
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-Djava.library.path=$out/lib/:${openjfx}/modules_libs/javafx.graphics:${openjfx}/modules_libs/javafx.media \
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--module-path $MODULE_PATH \
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--module $MODULE"
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done
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# lowercase alias (for convenience and required for browser extensions)
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ln -sf $out/bin/JabRef $out/bin/jabref
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ln -sf $out/bin/jabgui $out/bin/jabref
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ln -sf $out/bin/jabgui $out/bin/JabRef
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'';
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gradleUpdateScript = ''
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runHook preBuild
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# Add jbang deps to gradle
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sed -n 's|//DEPS \(.*\)| implementation("\1")|p' build-support/src/main/java/*.java | sort -u | sed -i '/dependencies {/r /dev/stdin' build-logic/build.gradle.kts
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gradle nixDownloadDeps -Dos.arch=amd64
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gradle nixDownloadDeps -Dos.arch=aarch64
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gradle assemble -Dos.arch=amd64
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gradle assemble -Dos.arch=aarch64
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'';
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meta = with lib; {
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meta = {
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description = "Open source bibliography reference manager";
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homepage = "https://www.jabref.org";
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sourceProvenance = with sourceTypes; [
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sourceProvenance = with lib.sourceTypes; [
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fromSource
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binaryBytecode # source bundles dependencies as jars
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binaryNativeCode # source bundles dependencies as jars
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];
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license = licenses.mit;
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license = lib.licenses.mit;
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platforms = [
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"x86_64-linux"
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"aarch64-linux"
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];
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maintainers = with maintainers; [
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maintainers = with lib.maintainers; [
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linsui
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];
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};
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