Merge pull request #58538 from bzizou/stacks

stacks: init at 2.3e
2019-04-03 14:41:00 +02:00
parent c009d32686 e7899d2a00
commit 126e1f8fd0
2 changed files with 21 additions and 0 deletions
@@ -0,0 +1,19 @@
+{ stdenv, fetchurl, zlib }:
+    
+stdenv.mkDerivation rec {
+  pname = "stacks";
+  version = "2.3e";
+  src = fetchurl {
+    url = "http://catchenlab.life.illinois.edu/stacks/source/${pname}-${version}.tar.gz";
+    sha256 = "046gmq8nzqy5v70ydqrhib2aiyrlja3cljvd37w4qbd4ryj3jr0w";
+  };
+
+  buildInputs = [ zlib ];
+
+  meta = {
+    description = "Software pipeline for building loci from short-read sequences";
+    homepage = http://catchenlab.life.illinois.edu/stacks/;
+    maintainers = [ stdenv.lib.maintainers.bzizou ];
+    license = stdenv.lib.licenses.gpl3;
+  };
+}
@@ -21837,6 +21837,8 @@ in

  somatic-sniper = callPackage ../applications/science/biology/somatic-sniper { };

+  stacks = callPackage ../applications/science/biology/stacks { };
+
  star = callPackage ../applications/science/biology/star { };

  strelka = callPackage ../applications/science/biology/strelka { };