Merge pull request #244135 from NixOS/python-updates

Python updates 2023-07-18

doc/languages-frameworks/python.section.md

@@ -1185,11 +1185,12 @@ following are specific to `buildPythonPackage`:
   variables which will be available when the binary is run. For example,
   `makeWrapperArgs = ["--set FOO BAR" "--set BAZ QUX"]`.
 * `namePrefix`: Prepends text to `${name}` parameter. In case of libraries, this
-  defaults to `"python3.8-"` for Python 3.8, etc., and in case of applications
-  to `""`.
+  defaults to `"python3.8-"` for Python 3.8, etc., and in case of applications to `""`.
 * `pipInstallFlags ? []`: A list of strings. Arguments to be passed to `pip
   install`. To pass options to `python setup.py install`, use
   `--install-option`. E.g., `pipInstallFlags=["--install-option='--cpp_implementation'"]`.
+* `pipBuildFlags ? []`: A list of strings. Arguments to be passed to `pip wheel`.
+* `pypaBuildFlags ? []`: A list of strings. Arguments to be passed to `python -m build --wheel`.
 * `pythonPath ? []`: List of packages to be added into `$PYTHONPATH`. Packages
   in `pythonPath` are not propagated (contrary to `propagatedBuildInputs`).
 * `preShellHook`: Hook to execute commands before `shellHook`.
@@ -1244,6 +1245,27 @@ with import <nixpkgs> {};
 in python.withPackages(ps: [ ps.blaze ])).env
 ```
 
+The next example shows a non trivial overriding of the `blas` implementation to
+be used through out all of the Python package set:
+
+```nix
+python3MyBlas = pkgs.python3.override {
+  packageOverrides = self: super: {
+    # We need toPythonModule for the package set to evaluate this
+    blas = super.toPythonModule(super.pkgs.blas.override {
+      blasProvider = super.pkgs.mkl;
+    });
+    lapack = super.toPythonModule(super.pkgs.lapack.override {
+      lapackProvider = super.pkgs.mkl;
+    });
+  };
+};
+```
+
+This is particularly useful for numpy and scipy users who want to gain speed with other blas implementations.
+Note that using simply `scipy = super.scipy.override { blas = super.pkgs.mkl; };` will likely result in
+compilation issues, because scipy dependencies need to use the same blas implementation as well.
+
 #### Optional extra dependencies {#python-optional-dependencies}
 
 Some packages define optional dependencies for additional features. With
@@ -1463,6 +1485,10 @@ are used in `buildPythonPackage`.
 - `flitBuildHook` to build a wheel using `flit`.
 - `pipBuildHook` to build a wheel using `pip` and PEP 517. Note a build system
   (e.g. `setuptools` or `flit`) should still be added as `nativeBuildInput`.
+- `pypaBuildHook` to build a wheel using
+  [`pypa/build`](https://pypa-build.readthedocs.io/en/latest/index.html) and
+  PEP 517/518. Note a build system (e.g. `setuptools` or `flit`) should still
+  be added as `nativeBuildInput`.
 - `pipInstallHook` to install wheels.
 - `pytestCheckHook` to run tests with `pytest`. See [example usage](#using-pytestcheckhook).
 - `pythonCatchConflictsHook` to check whether a Python package is not already existing.

pkgs/applications/audio/ledfx/default.nix

@@ -1,16 +1,16 @@
 { lib
-, python3
 , fetchPypi
+, python3
 }:
 
 python3.pkgs.buildPythonPackage rec {
   pname = "ledfx";
-  version = "2.0.67";
+  version = "2.0.69";
   format = "setuptools";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-lFxAMjglQZXCySr83PtvStU6hw2ucQu+rSjIHo1yZBk=";
+    hash = "sha256-gkO6XYiPMkU/zRLvc0yd3jJXVcAgAkR1W1ELTSN461o=";
   };
 
   postPatch = ''
@@ -52,7 +52,7 @@ python3.pkgs.buildPythonPackage rec {
   doCheck = false;
 
   meta = with lib; {
-    description = "LedFx is a network based LED effect controller with support for advanced real-time audio effects";
+    description = "Network based LED effect controller with support for advanced real-time audio effects";
     homepage = "https://github.com/LedFx/LedFx";
     changelog = "https://github.com/LedFx/LedFx/blob/${version}/CHANGELOG.rst";
     license = licenses.gpl3Only;

pkgs/development/interpreters/python/hooks/default.nix

@@ -62,6 +62,16 @@ in {
       };
     } ./pip-build-hook.sh) {};
 
+  pypaBuildHook = callPackage ({ makePythonHook, build, wheel }:
+    makePythonHook {
+      name = "pypa-build-hook.sh";
+      propagatedBuildInputs = [ build wheel ];
+      substitutions = {
+        inherit pythonInterpreter;
+      };
+    } ./pypa-build-hook.sh) {};
+
+
   pipInstallHook = callPackage ({ makePythonHook, pip }:
     makePythonHook {
       name = "pip-install-hook";

pkgs/development/interpreters/python/hooks/pip-build-hook.sh

@@ -1,13 +1,22 @@
 # Setup hook to use for pip projects
 echo "Sourcing pip-build-hook"
 
+declare -a pipBuildFlags
+
 pipBuildPhase() {
     echo "Executing pipBuildPhase"
     runHook preBuild
 
     mkdir -p dist
     echo "Creating a wheel..."
-    @pythonInterpreter@ -m pip wheel --verbose --no-index --no-deps --no-clean --no-build-isolation --wheel-dir dist .
+    @pythonInterpreter@ -m pip wheel \
+       --verbose \
+       --no-index \
+       --no-deps \
+       --no-clean \
+       --no-build-isolation \
+       --wheel-dir dist \
+       $pipBuildFlags .
     echo "Finished creating a wheel..."
 
     runHook postBuild

pkgs/development/interpreters/python/hooks/pypa-build-hook.sh

@@ -0,0 +1,19 @@
+# Setup hook to use for pypa/build projects
+echo "Sourcing pypa-build-hook"
+
+pypaBuildPhase() {
+    echo "Executing pypaBuildPhase"
+    runHook preBuild
+
+    echo "Creating a wheel..."
+    @pythonInterpreter@ -m build --no-isolation --outdir dist/ --wheel $pypaBuildFlags
+    echo "Finished creating a wheel..."
+
+    runHook postBuild
+    echo "Finished executing pypaBuildPhase"
+}
+
+if [ -z "${dontUsePypaBuild-}" ] && [ -z "${buildPhase-}" ]; then
+    echo "Using pypaBuildPhase"
+    buildPhase=pypaBuildPhase
+fi

pkgs/development/libraries/rapidfuzz-cpp/default.nix

@@ -7,13 +7,13 @@
 
 stdenv.mkDerivation (finalAttrs: {
   pname = "rapidfuzz-cpp";
-  version = "1.11.3";
+  version = "2.0.0";
 
   src = fetchFromGitHub {
     owner = "maxbachmann";
     repo = "rapidfuzz-cpp";
     rev = "v${finalAttrs.version}";
-    hash = "sha256-Qqdw5dy+JUBSDpbWEh3Ap3+3h+CcNdfBL+rloRzWGEQ=";
+    hash = "sha256-gLiITRCxX3nkzrlvU1/ZPxEo2v7q79/MwrnURUjrY28=";
   };
 
   nativeBuildInputs = [

pkgs/development/libraries/taskflow/default.nix

@@ -8,13 +8,13 @@
 
 stdenv.mkDerivation rec {
   pname = "taskflow";
-  version = "3.5.0";
+  version = "3.6.0";
 
   src = fetchFromGitHub {
     owner = "taskflow";
     repo = "taskflow";
     rev = "v${version}";
-    hash = "sha256-UUWJENGn60YQdUSQ55uL+/3xt/JUsVuKnqm/ef7wPVM=";
+    hash = "sha256-Iy9BhkyJa2nFxwVXb4LAlgVAHnu+58Ago2eEgAIlZ7M=";
   };
 
   patches = [

pkgs/development/libraries/xsimd/default.nix

@@ -11,7 +11,9 @@ stdenv.mkDerivation rec {
 
   nativeBuildInputs = [ cmake ];
 
-  cmakeFlags = [ "-DBUILD_TESTS=ON" ];
+  cmakeFlags = [
+    "-DBUILD_TESTS=${if (doCheck && stdenv.hostPlatform == stdenv.buildPlatform) then "ON" else "OFF"}"
+  ];
 
   doCheck = true;
   nativeCheckInputs = [ gtest ];

pkgs/development/python-modules/a2wsgi/default.nix

@@ -0,0 +1,40 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, asgiref
+, httpx
+, pdm-backend
+, pdm-pep517
+, pytest-asyncio
+, pytestCheckHook
+}:
+
+buildPythonPackage rec {
+  pname = "a2wsgi";
+  version = "1.7.0";
+  format = "pyproject";
+
+  src = fetchPypi {
+    inherit pname version;
+    hash = "sha256-qQb2LAJQ6wIBEguTQX3QsSsQW12zWvQxv+hu8NxburI=";
+  };
+
+  nativeBuildInputs = [
+    pdm-backend
+    pdm-pep517
+  ];
+
+  nativeCheckInputs = [
+    asgiref
+    httpx
+    pytest-asyncio
+    pytestCheckHook
+  ];
+
+  meta = with lib; {
+    description = "Convert WSGI app to ASGI app or ASGI app to WSGI app";
+    homepage = "https://github.com/abersheeran/a2wsgi";
+    license = licenses.asl20;
+    maintainers = with maintainers; [ SuperSandro2000 ];
+  };
+}

pkgs/development/python-modules/aiohttp/default.nix

@@ -101,6 +101,10 @@ buildPythonPackage rec {
     "test_async_with_session"
     "test_session_close_awaitable"
     "test_close_run_until_complete_not_deprecated"
+    # https://github.com/aio-libs/aiohttp/issues/7130
+    "test_static_file_if_none_match"
+    "test_static_file_if_match"
+    "test_static_file_if_modified_since_past_date"
   ] ++ lib.optionals stdenv.is32bit [
     "test_cookiejar"
   ] ++ lib.optionals stdenv.isDarwin [

pkgs/development/python-modules/aioimaplib/default.nix

@@ -28,6 +28,9 @@ buildPythonPackage rec {
     hash = "sha256-7Ta0BhtQSm228vvUa5z+pzM3UC7+BskgBNjxsbEb9P0=";
   };
 
+  # https://github.com/bamthomas/aioimaplib/issues/54
+  doCheck = pythonOlder "3.11";
+
   nativeCheckInputs = [
     asynctest
     docutils

pkgs/development/python-modules/astroid/default.nix

@@ -14,7 +14,7 @@
 
 buildPythonPackage rec {
   pname = "astroid";
-  version = "2.14.2"; # Check whether the version is compatible with pylint
+  version = "2.15.6"; # Check whether the version is compatible with pylint
   format = "pyproject";
 
   disabled = pythonOlder "3.7.2";
@@ -23,7 +23,7 @@ buildPythonPackage rec {
     owner = "PyCQA";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-SIBzn57UNn/sLuDWt391M/kcCyjCocHmL5qi2cSX2iA=";
+    hash = "sha256-0oNNEVD8rYGkM11nGUD+XMwE7xgk7mJIaplrAXaECFg=";
   };
 
   nativeBuildInputs = [

pkgs/development/python-modules/av/default.nix

@@ -9,7 +9,7 @@
 , setuptools
 
 # runtime
-, ffmpeg
+, ffmpeg-headless
 
 # tests
 , numpy
@@ -38,7 +38,7 @@ buildPythonPackage rec {
   ];
 
   buildInputs = [
-    ffmpeg
+    ffmpeg-headless
   ];
 
   preCheck = ''

pkgs/development/python-modules/boto3/default.nix

@@ -10,25 +10,26 @@
 
 buildPythonPackage rec {
   pname = "boto3";
-  version = "1.26.79"; # N.B: if you change this, change botocore and awscli to a matching version
+  version = "1.28.9"; # N.B: if you change this, change botocore and awscli to a matching version
   format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "boto";
     repo = pname;
     rev = version;
-    hash = "sha256-9Xsng4xZ+IGNZ3ViYVrOyKZdRH6QPSjZALj9Q3HECBU=";
+    hash = "sha256-NkNHA20yn1Q7uoq/EL1Wn8F1fpi1waQujutGIKsnxlI=";
   };
 
+  nativeBuildInputs = [
+    setuptools
+  ];
+
   propagatedBuildInputs = [
     botocore
     jmespath
     s3transfer
-    setuptools
   ];
 
-  doCheck = true;
-
   nativeCheckInputs = [
     pytestCheckHook
   ];

pkgs/development/python-modules/botocore/default.nix

@@ -3,7 +3,6 @@
 , fetchPypi
 , python-dateutil
 , jmespath
-, docutils
 , urllib3
 , pytestCheckHook
 , jsonschema
@@ -11,17 +10,17 @@
 
 buildPythonPackage rec {
   pname = "botocore";
-  version = "1.29.79"; # N.B: if you change this, change boto3 and awscli to a matching version
+  version = "1.31.9"; # N.B: if you change this, change boto3 and awscli to a matching version
+  format = "setuptools";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-x97UQGK+07kolEz7CeFXjtP+0OTJjeTyM/PCBWqNSR4=";
+    hash = "sha256-vYSdOslfF4E4Xtgx11OgSj7IcKWdZZgXWq7dcdwrr18=";
   };
 
   propagatedBuildInputs = [
     python-dateutil
     jmespath
-    docutils
     urllib3
   ];
 
@@ -30,8 +29,6 @@ buildPythonPackage rec {
     jsonschema
   ];
 
-  doCheck = true;
-
   disabledTestPaths = [
     # Integration tests require networking
     "tests/integration"

pkgs/development/python-modules/cairocffi/default.nix

@@ -8,27 +8,28 @@
 , makeFontsConf
 , freefont_ttf
 , pikepdf
-, pytest
-, glibcLocales
+, pytestCheckHook
 , cairo
 , cffi
 , numpy
 , withXcffib ? false
 , xcffib
-, python
 , glib
 , gdk-pixbuf
+, setuptools
 }:
 
 buildPythonPackage rec {
   pname = "cairocffi";
-  version = "1.4.0";
+  version = "1.5.1";
 
-  disabled = pythonOlder "3.5";
+  disabled = pythonOlder "3.7";
+
+  format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-UJM5syzNjXsAwiBMMnNs3njbU6MuahYtMSR40lYmzZo=";
+    hash = "sha256-Bxq3ty41MzALC/1VpSBWtP/cHtbmVneeKs7Ztwm4opU=";
   };
 
   patches = [
@@ -43,36 +44,23 @@ buildPythonPackage rec {
     ./fix_test_scaled_font.patch
   ];
 
-  postPatch = ''
-    substituteInPlace setup.cfg \
-      --replace "pytest-runner" "" \
-      --replace "pytest-cov" "" \
-      --replace "pytest-flake8" "" \
-      --replace "pytest-isort" "" \
-      --replace "--flake8 --isort" ""
-  '';
-
-  LC_ALL = "en_US.UTF-8";
-
-  # checkPhase require at least one 'normal' font and one 'monospace',
-  # otherwise glyph tests fails
-  FONTCONFIG_FILE = makeFontsConf {
-    fontDirectories = [ freefont_ttf ];
-  };
+  nativeBuildInputs = [
+    setuptools
+  ];
 
   propagatedNativeBuildInputs = [ cffi ];
 
   propagatedBuildInputs = [ cairo cffi ]
     ++ lib.optional withXcffib xcffib;
 
-  # pytestCheckHook does not work
-  nativeCheckInputs = [ numpy pikepdf pytest glibcLocales ];
-
-  checkPhase = ''
-    py.test $out/${python.sitePackages}
-  '';
+  nativeCheckInputs = [
+    numpy
+    pikepdf
+    pytestCheckHook
+  ];
 
   meta = with lib; {
+    changelog = "https://github.com/Kozea/cairocffi/blob/v${version}/NEWS.rst";
     homepage = "https://github.com/SimonSapin/cairocffi";
     license = licenses.bsd3;
     maintainers = with maintainers; [ ];

pkgs/development/python-modules/calver/default.nix

@@ -6,37 +6,43 @@
 , pytestCheckHook
 }:
 
-buildPythonPackage rec {
-  pname = "calver";
-  version = "2022.06.26";
+let
+  self = buildPythonPackage rec {
+    pname = "calver";
+    version = "2022.06.26";
+    format = "setuptools";
 
-  disabled = pythonOlder "3.5";
+    disabled = pythonOlder "3.5";
 
-  format = "setuptools";
+    src = fetchFromGitHub {
+      owner = "di";
+      repo = "calver";
+      rev = version;
+      hash = "sha256-YaXTkeUazwzghCX96Wfx39hGvukWKtHMLLeyF9OeiZI=";
+    };
 
-  src = fetchFromGitHub {
-    owner = "di";
-    repo = "calver";
-    rev = version;
-    hash = "sha256-YaXTkeUazwzghCX96Wfx39hGvukWKtHMLLeyF9OeiZI=";
+    postPatch = ''
+      substituteInPlace setup.py \
+        --replace "version=calver_version(True)" 'version="${version}"'
+    '';
+
+    doCheck = false; # avoid infinite recursion with hatchling
+
+    nativeCheckInputs = [
+      pretend
+      pytestCheckHook
+    ];
+
+    pythonImportsCheck = [ "calver" ];
+
+    passthru.tests.calver = self.overridePythonAttrs { doCheck = true; };
+
+    meta = {
+      description = "Setuptools extension for CalVer package versions";
+      homepage = "https://github.com/di/calver";
+      license = lib.licenses.asl20;
+      maintainers = with lib.maintainers; [ dotlambda ];
+    };
   };
-
-  postPatch = ''
-    substituteInPlace setup.py \
-      --replace "version=calver_version(True)" 'version="${version}"'
-  '';
-
-  nativeCheckInputs = [
-    pretend
-    pytestCheckHook
-  ];
-
-  pythonImportsCheck = [ "calver" ];
-
-  meta = {
-    description = "Setuptools extension for CalVer package versions";
-    homepage = "https://github.com/di/calver";
-    license = lib.licenses.asl20;
-    maintainers = with lib.maintainers; [ dotlambda ];
-  };
-}
+in
+  self

pkgs/development/python-modules/celery/default.nix

@@ -28,14 +28,14 @@
 
 buildPythonPackage rec {
   pname = "celery";
-  version = "5.3.0";
+  version = "5.3.1";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-Hqul7hTYyMC+2PYGPl4Q2r288jUDqGHPDhC3Ih2Zyw0=";
+    hash = "sha256-+E0cIaFSDBFsK30mWTkmWBGRQ1oDqnS3fJQbk8ocYhA=";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/chacha20poly1305-reuseable/default.nix

@@ -17,7 +17,7 @@
 
 let
   pname = "chacha20poly1305-reuseable";
-  version = "0.2.5";
+  version = "0.3.0";
 in
 
 buildPythonPackage {
@@ -30,7 +30,7 @@ buildPythonPackage {
     owner = "bdraco";
     repo = pname;
     rev = "v${version}";
-    hash = "sha256-T5mmHUMNbdvexeSaIDZIm/3yQcDKnWdor9IK63FE0no=";
+    hash = "sha256-/bXpwSBFr1IM04GNEczzsnsjdFV4miUAzJkvrQjfIq4=";
   };
 
   nativeBuildInputs = [

pkgs/development/python-modules/cherrypy/default.nix

@@ -27,7 +27,7 @@ buildPythonPackage rec {
   version = "18.8.0";
   format = "setuptools";
 
-  disabled = pythonOlder "3.7" || pythonAtLeast "3.11";
+  disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     pname = "CherryPy";
@@ -86,6 +86,20 @@ buildPythonPackage rec {
     "test_basic_request"
     "test_3_Redirect"
     "test_4_File_deletion"
+  ] ++ lib.optionals (pythonAtLeast "3.11") [
+    "testErrorHandling"
+    "testHookErrors"
+    "test_HTTP10_KeepAlive"
+    "test_No_Message_Body"
+    "test_HTTP11_Timeout"
+    "testGzip"
+    "test_malformed_header"
+    "test_no_content_length"
+    "test_post_filename_with_special_characters"
+    "test_post_multipart"
+    "test_iterator"
+    "test_1_Ram_Concurrency"
+    "test_2_File_Concurrency"
   ] ++ lib.optionals stdenv.isDarwin [
     "test_block"
   ];

pkgs/development/python-modules/click/default.nix

@@ -15,12 +15,12 @@
 
 buildPythonPackage rec {
   pname = "click";
-  version = "8.1.3";
+  version = "8.1.6";
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-doLcivswKXABZ0V16gDRgU2AjWo2r0Fagr1IHTe6e44=";
+    hash = "sha256-SO6EmVGRlSegRb/jv3uqipWcQjE04aW5jAXCC6daHL0=";
   };
 
   propagatedBuildInputs = lib.optionals (pythonOlder "3.8") [

pkgs/development/python-modules/constantly/default.nix

@@ -23,7 +23,7 @@ let
 
     pythonImportsCheck = [ "constantly" ];
 
-    passthru.tests.constantly = self.overrideAttrs (_: { doInstallCheck = true; });
+    passthru.tests.constantly = self.overridePythonAttrs { doCheck = true; };
 
     meta = with lib; {
       homepage = "https://github.com/twisted/constantly";

pkgs/development/python-modules/crownstone-cloud/default.nix

@@ -1,6 +1,5 @@
 { lib
 , aiohttp
-, asynctest
 , buildPythonPackage
 , fetchFromGitHub
 , fetchpatch
@@ -34,7 +33,6 @@ buildPythonPackage rec {
 
   propagatedBuildInputs = [
     aiohttp
-    asynctest
     certifi
   ];
 

pkgs/development/python-modules/cryptography/default.nix

@@ -3,25 +3,25 @@
 , callPackage
 , buildPythonPackage
 , fetchPypi
-, rustPlatform
 , cargo
-, rustc
-, setuptoolsRustBuildHook
-, openssl
-, Security
-, isPyPy
 , cffi
+, hypothesis
+, iso8601
+, isPyPy
+, libiconv
+, libxcrypt
+, openssl
 , pkg-config
+, pretend
+, py
 , pytestCheckHook
 , pytest-subtests
 , pythonOlder
-, pretend
-, libiconv
-, libxcrypt
-, iso8601
-, py
 , pytz
-, hypothesis
+, rustc
+, rustPlatform
+, Security
+, setuptoolsRustBuildHook
 }:
 
 let
@@ -29,20 +29,20 @@ let
 in
 buildPythonPackage rec {
   pname = "cryptography";
-  version = "40.0.1"; # Also update the hash in vectors.nix
-  format = "setuptools";
-  disabled = pythonOlder "3.6";
+  version = "41.0.2"; # Also update the hash in vectors.nix
+  format = "pyproject";
+  disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-KAPy+LHpX2FEGZJsfm9V2CivxhTKXtYVQ4d65mjMNHI=";
+    hash = "sha256-fSML+FYWTeFk7LYVzMFMf8beaQbd1bSR86+Q01FMklw=";
   };
 
   cargoDeps = rustPlatform.fetchCargoTarball {
     inherit src;
     sourceRoot = "${pname}-${version}/${cargoRoot}";
     name = "${pname}-${version}";
-    hash = "sha256-gFfDTc2QWBWHBCycVH1dYlCsWQMVcRZfOBIau+njtDU=";
+    hash = "sha256-hkuoICa/suMXlr4u95JbMlFzi27lJqJRmWnX3nZfzKU=";
   };
 
   postPatch = ''
@@ -100,8 +100,6 @@ buildPythonPackage rec {
       Cryptography includes both high level recipes and low level interfaces to
       common cryptographic algorithms such as symmetric ciphers, message
       digests, and key derivation functions.
-      Our goal is for it to be your "cryptographic standard library". It
-      supports Python 2.7, Python 3.5+, and PyPy 5.4+.
     '';
     homepage = "https://github.com/pyca/cryptography";
     changelog = "https://cryptography.io/en/latest/changelog/#v"

pkgs/development/python-modules/cryptography/vectors.nix

@@ -1,17 +1,19 @@
-{ buildPythonPackage, fetchPypi, lib, cryptography }:
+{ buildPythonPackage, fetchPypi, lib, cryptography, setuptools }:
 
 buildPythonPackage rec {
   pname = "cryptography-vectors";
   # The test vectors must have the same version as the cryptography package
   inherit (cryptography) version;
-  format = "setuptools";
+  format = "pyproject";
 
   src = fetchPypi {
     pname = "cryptography_vectors";
     inherit version;
-    hash = "sha256-hGBwa1tdDOSoVXHKM4nPiPcAu2oMYTPcn+D1ovW9oEE=";
+    hash = "sha256-Ao3/lKhSLKgYsRKV/xLfVfNI8zoZPAWX3f6COeU9FYI=";
   };
 
+  nativeBuildInputs = [ setuptools ];
+
   # No tests included
   doCheck = false;
 
@@ -20,7 +22,7 @@ buildPythonPackage rec {
   meta = with lib; {
     description = "Test vectors for the cryptography package";
     homepage = "https://cryptography.io/en/latest/development/test-vectors/";
-    # Source: https://github.com/pyca/cryptography/tree/master/vectors;
+    downloadPage = "https://github.com/pyca/cryptography/tree/master/vectors";
     license = with licenses; [ asl20 bsd3 ];
     maintainers = with maintainers; [ SuperSandro2000 ];
   };

pkgs/development/python-modules/cvxpy/default.nix

@@ -16,14 +16,14 @@
 
 buildPythonPackage rec {
   pname = "cvxpy";
-  version = "1.3.1";
+  version = "1.3.2";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-8Hv+k2d6dVqFVMT9piLvAeIkes6Zs6eBB6qQcODQo8s=";
+    hash = "sha256-C2heUEDxmfPXA/MPXSLR+GVZdiNFUVPR3ddwJFrvCXU=";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/dashing/default.nix

@@ -1,21 +1,23 @@
 { lib
-, python3
+, buildPythonPackage
 , fetchPypi
+, pythonOlder
+, blessed
 }:
 
-python3.pkgs.buildPythonPackage rec {
+buildPythonPackage rec {
   pname = "dashing";
   version = "0.1.0";
   format = "setuptools";
 
-  disabled = python3.pythonOlder "3.7";
+  disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
     hash = "sha256-JRRgjg8pp3Xb0bERFWEhnOg9U8+kuqL+QQH6uE/Vbxs=";
   };
 
-  propagatedBuildInputs = with python3.pkgs; [
+  propagatedBuildInputs = [
     blessed
   ];
 

pkgs/development/python-modules/dask/default.nix

@@ -1,46 +1,53 @@
 { lib
 , stdenv
-, arrow-cpp
-, bokeh
 , buildPythonPackage
+, fetchFromGitHub
+
+# build-syste
+, setuptools
+, versioneer
+
+# dependencies
 , click
 , cloudpickle
-, distributed
-, fastparquet
-, fetchFromGitHub
-, fetchpatch
 , fsspec
 , importlib-metadata
-, jinja2
-, numpy
 , packaging
-, pandas
 , partd
+, pyyaml
+, toolz
+
+# optional-dependencies
+, numpy
 , pyarrow
+, lz4
+, pandas
+, distributed
+, bokeh
+, jinja2
+
+# tests
+, arrow-cpp
+, hypothesis
+, pytest-asyncio
 , pytest-rerunfailures
 , pytest-xdist
 , pytestCheckHook
 , pythonOlder
-, pyyaml
-, scipy
-, setuptools
-, toolz
-, versioneer
-, zarr
 }:
 
 buildPythonPackage rec {
   pname = "dask";
-  version = "2023.4.1";
-  format = "setuptools";
+  version = "2023.7.1";
+  format = "pyproject";
 
   disabled = pythonOlder "3.8";
 
   src = fetchFromGitHub {
     owner = "dask";
-    repo = pname;
+    repo = "dask";
     rev = "refs/tags/${version}";
-    hash = "sha256-PkEFXF6OFZU+EMFBUopv84WniQghr5Q6757Qx6D5MyE=";
+    hash = "sha256-1KnvIMEWT1MwlvkdgH10xk+lGSsGWJMLBonTtWwKjog=";
   };
 
   nativeBuildInputs = [
@@ -59,13 +66,18 @@ buildPythonPackage rec {
     toolz
   ];
 
-  passthru.optional-dependencies = {
+  passthru.optional-dependencies = lib.fix (self: {
     array = [
       numpy
     ];
     complete = [
-      distributed
-    ];
+      pyarrow
+      lz4
+    ]
+    ++ self.array
+    ++ self.dataframe
+    ++ self.distributed
+    ++ self.diagnostics;
     dataframe = [
       numpy
       pandas
@@ -77,16 +89,16 @@ buildPythonPackage rec {
       bokeh
       jinja2
     ];
-  };
+  });
 
   nativeCheckInputs = [
     pytestCheckHook
     pytest-rerunfailures
     pytest-xdist
-    scipy
-    zarr
+    # from panda[test]
+    hypothesis
+    pytest-asyncio
   ] ++ lib.optionals (!arrow-cpp.meta.broken) [ # support is sparse on aarch64
-    fastparquet
     pyarrow
   ];
 
@@ -103,7 +115,7 @@ buildPythonPackage rec {
     substituteInPlace pyproject.toml \
       --replace " --durations=10" "" \
       --replace " --cov-config=pyproject.toml" "" \
-      --replace " -v" ""
+      --replace "\"-v" "\" "
   '';
 
   pytestFlagsArray = [
@@ -120,12 +132,10 @@ buildPythonPackage rec {
     # AttributeError: 'str' object has no attribute 'decode'
     "test_read_dir_nometa"
   ] ++ [
-    "test_chunksize_files"
-    # TypeError: 'ArrowStringArray' with dtype string does not support reduction 'min'
-    "test_set_index_string"
-    # numpy 1.24
-    # RuntimeWarning: invalid value encountered in cast
-    "test_setitem_extended_API_2d_mask"
+    # AttributeError: 'ArrowStringArray' object has no attribute 'tobytes'. Did you mean: 'nbytes'?
+    "test_dot"
+    "test_dot_nan"
+    "test_merge_column_with_nulls"
   ];
 
   __darwinAllowLocalNetworking = true;

pkgs/development/python-modules/devtools/default.nix

@@ -12,7 +12,7 @@
 
 buildPythonPackage rec {
   pname = "devtools";
-  version = "0.10.0";
+  version = "0.11.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -20,8 +20,8 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "samuelcolvin";
     repo = "python-${pname}";
-    rev = "v${version}";
-    hash = "sha256-x9dL/FE94OixMAmjnmfzZUcYJBqE5P2AAIFsNJF0Fxo=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-ogogXZnuSFkWktCin+cyefjqIbGFRBVIeOrZJAa3hOE=";
   };
 
   nativeBuildInputs = [
@@ -47,10 +47,15 @@ buildPythonPackage rec {
   disabledTests = [
     # Test for Windows32
     "test_print_subprocess"
-    # sensitive to timing
+    # Sensitive to timing
     "test_multiple_not_verbose"
-    # sensitive to interpreter output
-    "test_simple_vars"
+    # Sensitive to interpreter output
+    "test_simple"
+  ];
+
+  disabledTestPaths = [
+    # pytester_pretty is not available in Nixpkgs
+    "tests/test_insert_assert.py"
   ];
 
   pythonImportsCheck = [

pkgs/development/python-modules/dj-rest-auth/default.nix

@@ -12,13 +12,13 @@
 
 buildPythonPackage rec {
   pname = "dj-rest-auth";
-  version = "3.0.0";
+  version = "4.0.1";
 
   src = fetchFromGitHub {
     owner = "iMerica";
     repo = "dj-rest-auth";
     rev = "refs/tags/${version}";
-    hash = "sha256-wkbFUrvKhdp2Hd4QkXAvhMiaqSXFD/fgIw03nLPaO5I=";
+    hash = "sha256-+ladx0b/bvvUW8zLjtG8IiWWdfPTqqm/KYbEK9uiFaU=";
   };
 
   postPatch = ''

pkgs/development/python-modules/django-bootstrap3/default.nix

@@ -1,24 +1,36 @@
 { lib
 , buildPythonPackage
-, fetchPypi
-, setuptools
+, fetchFromGitHub
+
+# build-system
+, hatchling
+
+# non-propagates
 , django
+
+# tests
 , pytest-django
 , pytestCheckHook
 }:
 
 buildPythonPackage rec {
   pname = "django-bootstrap3";
-  version = "23.1";
+  version = "23.4";
   format = "pyproject";
 
-  src = fetchPypi {
-    inherit pname version;
-    hash = "sha256-cJW3xmqJ87rreOoCh5nr15XSlzn8hgJGBCLnwqGUrTA=";
+  src = fetchFromGitHub {
+    owner = "zostera";
+    repo = "django-bootstrap3";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-1/JQ17GjBHH0JbY4EnHOS2B3KhEJdG2yL6O2nc1HNNc=";
   };
 
+  postPatch = ''
+    sed -i '/beautifulsoup4/d' pyproject.toml
+  '';
+
   nativeBuildInputs = [
-    setuptools
+    hatchling
   ];
 
   buildInputs = [
@@ -39,7 +51,7 @@ buildPythonPackage rec {
   meta = with lib; {
     description = "Bootstrap 3 integration for Django";
     homepage = "https://github.com/zostera/django-bootstrap3";
-    changelog = "https://github.com/zostera/django-bootstrap3/blob/${version}/CHANGELOG.md";
+    changelog = "https://github.com/zostera/django-bootstrap3/blob/v${version}/CHANGELOG.md";
     license = licenses.bsd3;
     maintainers = with maintainers; [ hexa ];
   };

pkgs/development/python-modules/django-bootstrap4/default.nix

@@ -3,30 +3,32 @@
 , fetchFromGitHub
 
 # build-system
-, setuptools
+, hatchling
+
+# non-propagates
+, django
 
 # dependencies
 , beautifulsoup4
 
 # tests
-, django
 , python
 }:
 
 buildPythonPackage rec {
   pname = "django-bootstrap4";
-  version = "23.1";
+  version = "23.2";
   format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "zostera";
     repo = "django-bootstrap4";
-    rev = "v${version}";
-    hash = "sha256-55pfUPwxDzpDn4stMEPvrQAexs+goN5SKFvwSR3J4aM=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-RYGwi+hRfTqPAikrv33w27v1/WLwRvXexSusJKdr2o8=";
   };
 
   nativeBuildInputs = [
-    setuptools
+    hatchling
   ];
 
   propagatedBuildInputs = [

pkgs/development/python-modules/django-js-asset/default.nix

@@ -1,22 +1,27 @@
 { lib
 , buildPythonPackage
 , fetchFromGitHub
+, hatchling
 , django
 , python
 }:
 
 buildPythonPackage rec {
   pname = "django-js-asset";
-  version = "2.0";
-  format = "setuptools";
+  version = "2.1";
+  format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "matthiask";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-YDOmbqB0xDBAlOSO1UBYJ8VfRjJ8Z6Hw1i24DNSrnjw=";
+    hash = "sha256-rxJ9TgVBiJByiFSLTg/dtAR31Fs14D4sh2axyBcKGTU=";
   };
 
+  nativeBuildInputs = [
+    hatchling
+  ];
+
   propagatedBuildInputs = [
     django
   ];

pkgs/development/python-modules/django-oauth-toolkit/default.nix

@@ -47,10 +47,12 @@ buildPythonPackage rec {
 
   DJANGO_SETTINGS_MODULE = "tests.settings";
 
+  # xdist is disabled right now because it can cause race conditions on high core machines
+  # https://github.com/jazzband/django-oauth-toolkit/issues/1300
   nativeCheckInputs = [
     djangorestframework
     pytest-django
-    pytest-xdist
+    # pytest-xdist
     pytest-mock
     pytestCheckHook
   ];

pkgs/development/python-modules/dnspython/default.nix

@@ -9,29 +9,29 @@
 , h2
 , httpx
 , idna
+, poetry-core
 , pytestCheckHook
 , pythonOlder
 , requests
 , requests-toolbelt
-, setuptools-scm
 , sniffio
 , trio
 }:
 
 buildPythonPackage rec {
   pname = "dnspython";
-  version = "2.3.0";
-  format = "setuptools";
+  version = "2.4.1";
+  format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-Ik4ysD60a+cOEu9tZOC+Ejpk5iGrTAgi/21FDVKlQLk=";
+    hash = "sha256-wzlxx5r1vpaLuJfpXCRI4RpkXuhNk7Jlzgt6q+Xf3Kg=";
   };
 
   nativeBuildInputs = [
-    setuptools-scm
+    poetry-core
   ];
 
   passthru.optional-dependencies = {

pkgs/development/python-modules/drf-spectacular/default.nix

@@ -28,13 +28,13 @@
 
 buildPythonPackage rec {
   pname = "drf-spectacular";
-  version = "0.26.2";
+  version = "0.26.3";
 
   src = fetchFromGitHub {
     owner = "tfranzel";
     repo = "drf-spectacular";
     rev = "refs/tags/${version}";
-    hash = "sha256-wwR7ZdbWFNRgxQubdgriDke5W6u7VNsNZV9xqQypSrY=";
+    hash = "sha256-O47676BOuCx3wMpeuRATQOAWZQev+R+OxZi4boQABmc=";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/eventlet/default.nix

@@ -5,9 +5,10 @@
 , pythonOlder
 , dnspython
 , greenlet
+, isPyPy
 , monotonic
 , six
-, nose
+, nose3
 , iana-etc
 , pytestCheckHook
 , libredirect
@@ -35,10 +36,12 @@ buildPythonPackage rec {
 
   nativeCheckInputs = [
     pytestCheckHook
-    nose
+    nose3
   ];
 
-  doCheck = !stdenv.isDarwin;
+  # libredirect is not available on darwin
+  # tests hang on pypy indefinitely
+  doCheck = !stdenv.isDarwin && !isPyPy;
 
   preCheck = lib.optionalString doCheck ''
     echo "nameserver 127.0.0.1" > resolv.conf

pkgs/development/python-modules/factory_boy/default.nix

@@ -7,20 +7,29 @@
 , flask-sqlalchemy
 , mongoengine
 , pytestCheckHook
+, pythonOlder
 , sqlalchemy
+, sqlalchemy-utils
 }:
 
 buildPythonPackage rec {
   pname = "factory-boy";
-  version = "3.2.1";
+  version = "3.3.0";
   format = "setuptools";
 
+  disabled = pythonOlder "3.7";
+
   src = fetchPypi {
     pname = "factory_boy";
     inherit version;
-    hash = "sha256-qY0newwEfHXrbkq4UIp/gfsD0sshmG9ieRNUbveipV4=";
+    hash = "sha256-vHbZfRplu9mEKm1yKIIJjrVJ7I7hCB+fsuj/KfDDAPE=";
   };
 
+  postPatch = ''
+    substituteInPlace tests/test_version.py \
+      --replace '"3.2.1.dev0")' '"${version}")'
+  '';
+
   propagatedBuildInputs = [
     faker
   ];
@@ -32,6 +41,7 @@ buildPythonPackage rec {
     mongoengine
     pytestCheckHook
     sqlalchemy
+    sqlalchemy-utils
   ];
 
   # Checks for MongoDB requires an a running DB
@@ -51,6 +61,7 @@ buildPythonPackage rec {
   meta = with lib; {
     description = "Python package to create factories for complex objects";
     homepage = "https://github.com/rbarrois/factory_boy";
+    changelog = "https://github.com/FactoryBoy/factory_boy/blob/${version}/docs/changelog.rst";
     license = with licenses; [ mit ];
     maintainers = with maintainers; [ fab ];
   };

pkgs/development/python-modules/filelock/default.nix

@@ -10,14 +10,14 @@
 
 buildPythonPackage rec {
   pname = "filelock";
-  version = "3.12.0";
+  version = "3.12.2";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-/AOuQyiMAT0uqDyFlwAbESnbNRqtnFf+JAkyeRa45xg=";
+    hash = "sha256-ACdAUY2KpZomsMduEPuMbhXq6CXTS2/fZwMz/XuTjYE=";
   };
 
   nativeBuildInputs = [

pkgs/development/python-modules/fixtures/default.nix

@@ -1,53 +1,47 @@
 { lib
 , buildPythonPackage
 , fetchPypi
-, fetchpatch
-, pythonAtLeast
 , pbr
+, setuptools
 , testtools
 , mock
-, python
-, six
+, pytestCheckHook
 }:
 
 buildPythonPackage rec {
   pname = "fixtures";
-  version = "3.0.0";
+  version = "4.1.0";
+  format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "fcf0d60234f1544da717a9738325812de1f42c2fa085e2d9252d8fff5712b2ef";
+    hash = "sha256-grHF5p9hVSbvbAZxiKHmxgZ99/iDMlCcmfi4/buXdvM=";
   };
 
-  patches = lib.optionals (pythonAtLeast "3.9") [
-    # drop tests that try to monkeypatch a classmethod, which fails on python3.9
-    # https://github.com/testing-cabal/fixtures/issues/44
-    (fetchpatch {
-       url = "https://salsa.debian.org/openstack-team/python/python-fixtures/-/raw/debian/victoria/debian/patches/remove-broken-monkey-patch-test.patch";
-       sha256 = "1s3hg2zmqc4shmnf90kscphzj5qlqpxghzw2a59p8f88zrbsj97r";
-    })
-  ];
-
   nativeBuildInputs = [
     pbr
+    setuptools
   ];
 
   propagatedBuildInputs = [
-    testtools
-    six # not in install_requires, but used in fixture.py
+    pbr
   ];
 
+  passthru.optional-dependencies = {
+    streams = [
+      testtools
+    ];
+  };
+
   nativeCheckInputs = [
     mock
-  ];
-
-  checkPhase = ''
-    ${python.interpreter} -m testtools.run fixtures.test_suite
-  '';
+    pytestCheckHook
+  ] ++ passthru.optional-dependencies.streams;
 
   meta = {
     description = "Reusable state for writing clean tests and more";
-    homepage = "https://pypi.python.org/pypi/fixtures";
+    homepage = "https://pypi.org/project/fixtures/";
+    changelog = "https://github.com/testing-cabal/fixtures/blob/${version}/NEWS";
     license = lib.licenses.asl20;
   };
 }

pkgs/development/python-modules/flask-limiter/default.nix

@@ -1,38 +1,36 @@
 { lib
+, asgiref
 , buildPythonPackage
 , fetchFromGitHub
-
 , flask
+, hiro
 , limits
 , ordered-set
-, rich
-, typing-extensions
-
-, asgiref
-, hiro
 , pymemcache
+, pymongo
 , pytest-mock
 , pytestCheckHook
+, pythonOlder
 , redis
-, pymongo
+, rich
+, typing-extensions
 }:
 
 buildPythonPackage rec {
   pname = "flask-limiter";
-  version = "3.1.0";
+  version = "3.3.1";
   format = "setuptools";
 
+  disabled = pythonOlder "3.7";
+
   src = fetchFromGitHub {
     owner = "alisaifee";
     repo = "flask-limiter";
     rev = "refs/tags/${version}";
-    hash = "sha256-eAJRqyAH1j1NHYfagRZM2fPE6hm9+tJHD8FMqvgvMBI=";
+    hash = "sha256-YDVZ/dD+TRJEnJRTRmGEB6EIkK5eQ5MdXh8FideoVDQ=";
   };
 
   postPatch = ''
-    substituteInPlace requirements/main.txt \
-      --replace "rich>=12,<13" "rich"
-
     sed -i "/--cov/d" pytest.ini
 
     # flask-restful is unmaintained and breaks regularly, don't depend on it
@@ -82,11 +80,14 @@ buildPythonPackage rec {
     "tests/test_storage.py"
   ];
 
-  pythonImportsCheck = [ "flask_limiter" ];
+  pythonImportsCheck = [
+    "flask_limiter"
+  ];
 
   meta = with lib; {
     description = "Rate limiting for flask applications";
     homepage = "https://flask-limiter.readthedocs.org/";
+    changelog = "https://github.com/alisaifee/flask-limiter/blob/${version}/HISTORY.rst";
     license = licenses.mit;
     maintainers = with maintainers; [ ];
   };

pkgs/development/python-modules/flet-core/default.nix

@@ -1,7 +1,13 @@
 { lib
-, python3
 , buildPythonPackage
 , fetchPypi
+
+# build-system
+, poetry-core
+
+# propagates
+, typing-extensions
+, repath
 }:
 
 buildPythonPackage rec {
@@ -15,13 +21,13 @@ buildPythonPackage rec {
     hash = "sha256-8WG7odYiGrew4GwD+MUuzQPmDn7V/GmocBproqsbCNw=";
   };
 
-  nativeBuildInputs = with python3.pkgs; [
+  nativeBuildInputs = [
     poetry-core
   ];
 
-  propagatedBuildInputs = with python3.pkgs; [
-    typing-extensions
+  propagatedBuildInputs = [
     repath
+    typing-extensions
   ];
 
   doCheck = false;

pkgs/development/python-modules/flet/default.nix

@@ -1,7 +1,20 @@
 { lib
-, python3
 , buildPythonPackage
 , fetchPypi
+
+# build-system
+, poetry-core
+
+# propagates
+, flet-core
+, httpx
+, oauthlib
+, packaging
+, typing-extensions
+, watchdog
+, websocket-client
+, websockets
+
 }:
 
 buildPythonPackage rec {
@@ -20,11 +33,11 @@ buildPythonPackage rec {
       --replace 'watchdog = "^2' 'watchdog = ">=2'
   '';
 
-  nativeBuildInputs = with python3.pkgs; [
+  nativeBuildInputs = [
     poetry-core
   ];
 
-  propagatedBuildInputs = with python3.pkgs; [
+  propagatedBuildInputs = [
     flet-core
     typing-extensions
     websocket-client

pkgs/development/python-modules/flit/default.nix

@@ -17,14 +17,14 @@
 
 buildPythonPackage rec {
   pname = "flit";
-  version = "3.8.0";
+  version = "3.9.0";
   format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "takluyver";
     repo = "flit";
     rev = version;
-    hash = "sha256-iXf9K/xI4u+dDV0Zf6S08nbws4NqycrTEW0B8/qCjQc=";
+    hash = "sha256-yl2+PcKr7xRW4oIBWl+gzh/nKhSNu5GH9fWKRGgaNHU=";
   };
 
   nativeBuildInputs = [
@@ -51,6 +51,7 @@ buildPythonPackage rec {
   ];
 
   meta = with lib; {
+    changelog = "https://github.com/pypa/flit/blob/${version}/doc/history.rst";
     description = "A simple packaging tool for simple packages";
     homepage = "https://github.com/pypa/flit";
     license = licenses.bsd3;

pkgs/development/python-modules/fnv-hash-fast/default.nix

@@ -11,14 +11,14 @@
 
 buildPythonPackage rec {
   pname = "fnv-hash-fast";
-  version = "0.3.1";
+  version = "0.4.0";
   format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "bdraco";
     repo = "fnv-hash-fast";
     rev = "v${version}";
-    hash = "sha256-yApMUTO6Kq2YESGMpkU4/FlN57+hX0uQr2fGH7QIdUE=";
+    hash = "sha256-4JhzrRnpb9+FYXd0S2XcBelaHuRksm8RC29rxZqtlpw=";
   };
 
   postPatch = ''

pkgs/development/python-modules/glad2/default.nix

@@ -1,9 +1,10 @@
 { lib
-, python3
+, buildPythonPackage
 , fetchPypi
+, jinja2
 }:
 
-python3.pkgs.buildPythonPackage rec {
+buildPythonPackage rec {
   pname = "glad2";
   version = "2.0.4";
   format = "setuptools";
@@ -13,15 +14,18 @@ python3.pkgs.buildPythonPackage rec {
     hash = "sha256-7eFjn2nyugjx9JikCnB/NKYJ0k6y6g1sk2RomnmM99A=";
   };
 
-  propagatedBuildInputs = with python3.pkgs; [
+  propagatedBuildInputs = [
     jinja2
   ];
 
+  # no python tests
+  doCheck = false;
+
   pythonImportsCheck = [ "glad" ];
 
   meta = with lib; {
     description = "Multi-Language GL/GLES/EGL/GLX/WGL Loader-Generator based on the official specifications";
-    homepage = "https://pypi.org/project/glad2";
+    homepage = "https://github.com/Dav1dde/glad";
     license = licenses.mit;
     maintainers = with maintainers; [ kranzes ];
   };

pkgs/development/python-modules/graphene-django/default.nix

@@ -21,7 +21,7 @@
 
 buildPythonPackage rec {
   pname = "graphene-django";
-  version = "3.1.2";
+  version = "3.1.3";
   format = "setuptools";
 
   disabled = pythonOlder "3.6";
@@ -30,7 +30,7 @@ buildPythonPackage rec {
     owner = "graphql-python";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-VQwDK9FRbHy/AFbdZKmvl5e52smSCyWTrs00DvJqVmo=";
+    hash = "sha256-33Z6W2dAsj5VXt3E7XJtUFiq7yFlCixnFnhbAUv+xgU=";
   };
 
   postPatch = ''

pkgs/development/python-modules/gunicorn/default.nix

@@ -1,7 +1,6 @@
 { lib
 , buildPythonPackage
 , fetchFromGitHub
-, fetchpatch
 , pythonOlder
 , eventlet
 , gevent
@@ -11,24 +10,17 @@
 
 buildPythonPackage rec {
   pname = "gunicorn";
-  version = "20.1.0";
+  version = "21.2.0";
+  format = "setuptools";
   disabled = pythonOlder "3.5";
 
   src = fetchFromGitHub {
     owner = "benoitc";
     repo = "gunicorn";
     rev = version;
-    hash = "sha256-xdNHm8NQWlAlflxof4cz37EoM74xbWrNaf6jlwwzHv4=";
+    hash = "sha256-xP7NNKtz3KNrhcAc00ovLZRx2h6ZqHbwiFOpCiuwf98=";
   };
 
-  patches = [
-    (fetchpatch {
-      # fix eventlet 0.30.3+ compability
-      url = "https://github.com/benoitc/gunicorn/commit/6a8ebb4844b2f28596ffe7421eb9f7d08c8dc4d8.patch";
-      hash = "sha256-+iApgohzPZ/cHTGBNb7XkqLaHOVVPF26BnPUsvISoZw=";
-    })
-  ];
-
   postPatch = ''
     substituteInPlace setup.cfg \
       --replace "--cov=gunicorn --cov-report=xml" ""

pkgs/development/python-modules/hatchling/default.nix

@@ -5,11 +5,11 @@
 
 # runtime
 , editables
-, importlib-metadata # < 3.8
 , packaging
 , pathspec
 , pluggy
 , tomli
+, trove-classifiers
 
 # tests
 , build
@@ -18,27 +18,24 @@
 , virtualenv
 }:
 
-let
+buildPythonPackage rec {
   pname = "hatchling";
-  version = "1.13.0";
-in
-buildPythonPackage {
-  inherit pname version;
+  version = "1.18.0";
   format = "pyproject";
+  disabled = pythonOlder "3.8";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-+NJ1osxyBzUoa3wuK8NdoFdh5tNpXC+kFlUDlfEMU8c=";
+    hash = "sha256-UOmcMRDOCvw/e9ut/xxxwXdY5HZzHCdgeUDPpmhkico=";
   };
 
-  # listed in backend/src/hatchling/ouroboros.py
+  # listed in backend/pyproject.toml
   propagatedBuildInputs = [
     editables
     packaging
     pathspec
     pluggy
-  ] ++ lib.optionals (pythonOlder "3.8") [
-    importlib-metadata
+    trove-classifiers
   ] ++ lib.optionals (pythonOlder "3.11") [
     tomli
   ];
@@ -54,7 +51,6 @@ buildPythonPackage {
   # listed in /backend/tests/downstream/requirements.txt
   nativeCheckInputs = [
     build
-    packaging
     requests
     virtualenv
   ];

pkgs/development/python-modules/hologram/default.nix

@@ -1,6 +1,7 @@
 { lib
 , buildPythonPackage
 , fetchFromGitHub
+, pythonAtLeast
 , jsonschema
 , pytestCheckHook
 , python-dateutil
@@ -12,6 +13,9 @@ buildPythonPackage rec {
   version = "0.0.16";
   format = "pyproject";
 
+  # ValueError: mutable default <class 'tests.conftest.Point'> for field a is not allowed: use default_factory
+  disabled = pythonAtLeast "3.11";
+
   src = fetchFromGitHub {
     owner = "dbt-labs";
     repo = pname;

pkgs/development/python-modules/html5tagger/default.nix

@@ -0,0 +1,38 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, setuptools-scm
+}:
+
+buildPythonPackage rec {
+  pname = "html5tagger";
+  version = "1.3.0";
+  format = "setuptools";
+
+  src = fetchFromGitHub {
+    owner = "sanic-org";
+    repo = "html5tagger";
+    rev = "v${version}";
+    hash = "sha256-Or0EizZC9FMjTcbgecDvgGB09KNGyxHreSDojgB7ysg=";
+  };
+
+  env.SETUPTOOLS_SCM_PRETEND_VERSION = version;
+
+  nativeBuildInputs = [
+    setuptools-scm
+  ];
+
+  # no tests
+  doCheck = false;
+
+  pythonImportsCheck = [
+    "html5tagger"
+  ];
+
+  meta = with lib; {
+    description = "Create HTML documents from Python";
+    homepage = "https://github.com/sanic-org/html5tagger";
+    license = licenses.unlicense;
+    maintainers = with maintainers; [ ];
+  };
+}

pkgs/development/python-modules/httpcore/default.nix

@@ -13,11 +13,14 @@
 , pythonOlder
 , sniffio
 , socksio
+# for passthru.tests
+, httpx
+, httpx-socks
 }:
 
 buildPythonPackage rec {
   pname = "httpcore";
-  version = "0.16.3";
+  version = "0.17.2";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -26,7 +29,7 @@ buildPythonPackage rec {
     owner = "encode";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-3bC97CTZi6An+owjoJF7Irtr7ONbP8RtNdTIGJRy0Ng=";
+    hash = "sha256-qAoORhzBbjXxgtzTqbAxWBxrohzfwDWm5mxxrgeXt48=";
   };
 
   propagatedBuildInputs = [
@@ -70,7 +73,12 @@ buildPythonPackage rec {
 
   __darwinAllowLocalNetworking = true;
 
+  passthru.tests = {
+    inherit httpx httpx-socks;
+  };
+
   meta = with lib; {
+    changelog = "https://github.com/encode/httpcore/releases/tag/${version}";
     description = "A minimal low-level HTTP client";
     homepage = "https://github.com/encode/httpcore";
     license = licenses.bsd3;

pkgs/development/python-modules/httpx/default.nix

@@ -29,7 +29,7 @@
 
 buildPythonPackage rec {
   pname = "httpx";
-  version = "0.23.3";
+  version = "0.24.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -38,7 +38,7 @@ buildPythonPackage rec {
     owner = "encode";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-ZLRzkyoFbAY2Xs1ORWBqvc2gpKovg9wRs/RtAryOcVg=";
+    hash = "sha256-qG6fgijNgQKjpSG6sg0+0yqeAU6qV7czR8NgWe63LIg=";
   };
 
   nativeBuildInputs = [

pkgs/development/python-modules/joblib/default.nix

@@ -1,32 +1,53 @@
 { lib
-, pythonAtLeast
-, pythonOlder
 , buildPythonPackage
+, pythonOlder
 , fetchPypi
 , stdenv
-, numpydoc
-, pytestCheckHook
-, lz4
+
+# build-system
 , setuptools
-, sphinx
+
+# propagates (optional, but unspecified)
+# https://github.com/joblib/joblib#dependencies
+, lz4
 , psutil
+
+# tests
+, pytestCheckHook
+, threadpoolctl
 }:
 
 
 buildPythonPackage rec {
   pname = "joblib";
-  version = "1.2.0";
+  version = "1.3.1";
+  format = "pyproject";
+
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-4c7kp55K8iiBFk8hjUMR9gB0GX+3B+CC6AO2H20TcBg=";
+    hash = "sha256-H5N5Bt9lMpupgBPclpL+IqTF5KZIES3lAFCLGKIbQeM=";
   };
 
-  nativeCheckInputs = [ sphinx numpydoc pytestCheckHook psutil ];
-  propagatedBuildInputs = [ lz4 setuptools ];
+  nativeBuildInputs = [
+    setuptools
+  ];
+
+  propagatedBuildInputs = [
+    lz4
+    psutil
+  ];
+
+  nativeCheckInputs = [
+    pytestCheckHook
+    threadpoolctl
+  ];
+
+  pytestFlagsArray = [
+    "joblib/test"
+  ];
 
-  pytestFlagsArray = [ "joblib/test" ];
   disabledTests = [
     "test_disk_used" # test_disk_used is broken: https://github.com/joblib/joblib/issues/57
     "test_parallel_call_cached_function_defined_in_jupyter" # jupyter not available during tests
@@ -36,6 +57,7 @@ buildPythonPackage rec {
   ];
 
   meta = with lib; {
+    changelog = "https://github.com/joblib/joblib/releases/tag/${version}";
     description = "Lightweight pipelining: using Python functions as pipeline jobs";
     homepage = "https://joblib.readthedocs.io/";
     license = licenses.bsd3;

pkgs/development/python-modules/jsonschema-spec/default.nix

@@ -2,29 +2,40 @@
 , buildPythonPackage
 , fetchFromGitHub
 , pythonOlder
+
+# build
 , poetry-core
-, jsonschema
+
+# propagates
 , pathable
 , pyyaml
-, typing-extensions
+, referencing
+, requests
+
+# tests
 , pytestCheckHook
+, responses
 }:
 
 buildPythonPackage rec {
   pname = "jsonschema-spec";
-  version = "0.1.4";
+  version = "0.2.3";
   format = "pyproject";
-  disabled = pythonOlder "3.7";
+
+  disabled = pythonOlder "3.8";
 
   src = fetchFromGitHub {
     owner = "p1c2u";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-kLCV9WPWGrVgpbueafMVqtGmj3ifrBzTChE2kyxpyZk=";
+    hash = "sha256-Sa97DwPnGMLmT00hVdkoGO7C0vrvtwxvUvv9lq4nCY4=";
   };
 
   postPatch = ''
-    sed -i "/--cov/d" pyproject.toml
+    sed -i "/^--cov/d" pyproject.toml
+
+    substituteInPlace pyproject.toml \
+      --replace 'referencing = ">=0.28.0,<0.30.0"' 'referencing = ">=0.28.0"'
   '';
 
   nativeBuildInputs = [
@@ -32,14 +43,15 @@ buildPythonPackage rec {
   ];
 
   propagatedBuildInputs = [
-    jsonschema
     pathable
     pyyaml
-    typing-extensions
+    referencing
+    requests
   ];
 
   nativeCheckInputs = [
     pytestCheckHook
+    responses
   ];
 
   meta = with lib; {

pkgs/development/python-modules/jsonschema-specifications/default.nix

@@ -0,0 +1,50 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, hatch-vcs
+, hatchling
+, importlib-resources
+, pytestCheckHook
+, pythonOlder
+, referencing
+}:
+
+buildPythonPackage rec {
+  pname = "jsonschema-specifications";
+  version = "2023.7.1";
+  format = "pyproject";
+
+  disabled = pythonOlder "3.8";
+
+  src = fetchPypi {
+    pname = "jsonschema_specifications";
+    inherit version;
+    hash = "sha256-yRpQQE6Iofa6QGNneOLuCPbiTFYT/kxTrCRXilp/crs=";
+  };
+
+  nativeBuildInputs = [
+    hatch-vcs
+    hatchling
+  ];
+
+  propagatedBuildInputs = [
+    referencing
+  ] ++ lib.optionals (pythonOlder "3.9") [
+    importlib-resources
+  ];
+
+  nativeCheckInputs = [
+    pytestCheckHook
+  ];
+
+  pythonImportsCheck = [
+    "jsonschema_specifications"
+  ];
+
+  meta = with lib; {
+    description = "Support files exposing JSON from the JSON Schema specifications";
+    homepage = "https://github.com/python-jsonschema/jsonschema-specifications";
+    license = licenses.mit;
+    maintainers = with maintainers; [ SuperSandro2000 ];
+  };
+}

pkgs/development/python-modules/jsonschema/default.nix

@@ -5,13 +5,13 @@
 , hatch-fancy-pypi-readme
 , hatch-vcs
 , hatchling
-, importlib-metadata
 , importlib-resources
+, jsonschema-specifications
 , pkgutil-resolve-name
-, pyrsistent
+, pytestCheckHook
 , pythonOlder
-, twisted
-, typing-extensions
+, referencing
+, rpds-py
 
 # optionals
 , fqdn
@@ -27,14 +27,14 @@
 
 buildPythonPackage rec {
   pname = "jsonschema";
-  version = "4.17.3";
+  version = "4.18.4";
   format = "pyproject";
 
-  disabled = pythonOlder "3.7";
+  disabled = pythonOlder "3.8";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-D4ZEN6uLYHa6ZwdFPvj5imoNUSqA6T+KvbZ29zfstg0=";
+    hash = "sha256-+zZCc1OZ+pWMDSqtcFeQFVRZbGM0n09rKDxJPPaSol0=";
   };
 
   postPatch = ''
@@ -49,10 +49,9 @@ buildPythonPackage rec {
 
   propagatedBuildInputs = [
     attrs
-    pyrsistent
-  ] ++ lib.optionals (pythonOlder "3.8") [
-    importlib-metadata
-    typing-extensions
+    jsonschema-specifications
+    referencing
+    rpds-py
   ] ++ lib.optionals (pythonOlder "3.9") [
     importlib-resources
     pkgutil-resolve-name
@@ -82,20 +81,15 @@ buildPythonPackage rec {
   };
 
   nativeCheckInputs = [
-    twisted
+    pytestCheckHook
   ];
 
-  checkPhase = ''
-    export JSON_SCHEMA_TEST_SUITE=json
-    trial jsonschema
-  '';
-
   pythonImportsCheck = [
     "jsonschema"
   ];
 
   meta = with lib; {
-    description = "An implementation of JSON Schema validation for Python";
+    description = "An implementation of JSON Schema validation";
     homepage = "https://github.com/python-jsonschema/jsonschema";
     license = licenses.mit;
     maintainers = with maintainers; [ domenkozar ];

pkgs/development/python-modules/jupyter-server/default.nix

@@ -15,6 +15,7 @@
 , jinja2
 , tornado
 , pyzmq
+, flaky
 , ipykernel
 , traitlets
 , jupyter-core
@@ -23,6 +24,7 @@
 , jupyter-server-terminals
 , nbformat
 , nbconvert
+, overrides
 , send2trash
 , terminado
 , prometheus-client
@@ -33,14 +35,14 @@
 
 buildPythonPackage rec {
   pname = "jupyter-server";
-  version = "2.0.6";
+  version = "2.7.0";
   format = "pyproject";
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     pname = "jupyter_server";
     inherit version;
-    hash= "sha256-jddZkukLfKVWeUoe1cylEmPGl6vG0N9WGvV0qhwKAz8=";
+    hash= "sha256-NtoKJm0xpBrDNaNmyIkzwX36W7gXpI9cAsFtMDvJR38=";
   };
 
   nativeBuildInputs = [
@@ -60,6 +62,7 @@ buildPythonPackage rec {
     jupyter-server-terminals
     nbformat
     nbconvert
+    overrides
     send2trash
     terminado
     prometheus-client
@@ -68,6 +71,7 @@ buildPythonPackage rec {
   ];
 
   nativeCheckInputs = [
+    flaky
     ipykernel
     pandoc
     pytestCheckHook
@@ -78,12 +82,17 @@ buildPythonPackage rec {
     requests
   ];
 
+  pytestFlagsArray = [
+    "-W" "ignore::DeprecationWarning"
+  ];
+
   preCheck = ''
     export HOME=$(mktemp -d)
     export PATH=$out/bin:$PATH
   '';
 
   disabledTests = [
+    "test_server_extension_list"
     "test_cull_idle"
   ] ++ lib.optionals stdenv.isDarwin [
     # attempts to use trashcan, build env doesn't allow this
@@ -103,6 +112,7 @@ buildPythonPackage rec {
   __darwinAllowLocalNetworking = true;
 
   meta = with lib; {
+    changelog = "https://github.com/jupyter-server/jupyter_server/releases/tag/v${version}";
     description = "The backend—i.e. core services, APIs, and REST endpoints—to Jupyter web applications";
     homepage = "https://github.com/jupyter-server/jupyter_server";
     license = licenses.bsdOriginal;

pkgs/development/python-modules/keyring/default.nix

@@ -14,13 +14,13 @@
 
 buildPythonPackage rec {
   pname = "keyring";
-  version = "23.13.1";
+  version = "24.2.0";
   format = "pyproject";
-  disabled = pythonOlder "3.7";
+  disabled = pythonOlder "3.8";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-ui4VqbNeIZCNCq9OCkesxS1q4zRE3w2itJ1BpG721ng=";
+    hash = "sha256-ygdGoZ7EISGfTXE/hI+il6ZhqKjBUEhn5Vv7XgkJFQk=";
   };
 
   nativeBuildInputs = [
@@ -54,7 +54,7 @@ buildPythonPackage rec {
   meta = with lib; {
     description = "Store and access your passwords safely";
     homepage    = "https://github.com/jaraco/keyring";
-    changelog   = "https://github.com/jaraco/keyring/blob/v${version}/CHANGES.rst";
+    changelog   = "https://github.com/jaraco/keyring/blob/v${version}/NEWS.rst";
     license     = licenses.mit;
     maintainers = with maintainers; [ lovek323 dotlambda ];
     platforms   = platforms.unix;

pkgs/development/python-modules/kombu/default.nix

@@ -4,43 +4,36 @@
 , azure-servicebus
 , backports-zoneinfo
 , buildPythonPackage
-, cached-property
 , case
 , fetchPypi
 , hypothesis
-, importlib-metadata
 , pyro4
 , pytestCheckHook
 , pythonOlder
 , pytz
 , vine
+, typing-extensions
 }:
 
 buildPythonPackage rec {
   pname = "kombu";
-  version = "5.3.0";
+  version = "5.3.1";
   format = "setuptools";
 
-  disabled = pythonOlder "3.7";
+  disabled = pythonOlder "3.8";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-0ITsH5b3p8N7qegWgjvbwI8Px92zpb5VWAXmkhAil9g=";
+    hash = "sha256-+9dXLZLAv3HBEqa0UWMVPepae2pwHsFrVown0P0jcPI=";
   };
 
-  postPatch = ''
-    substituteInPlace requirements/test.txt \
-      --replace "pytz>dev" "pytz"
-  '';
-
   propagatedBuildInputs = [
     amqp
     vine
+  ] ++ lib.optionals (pythonOlder "3.10") [
+    typing-extensions
   ] ++ lib.optionals (pythonOlder "3.9") [
     backports-zoneinfo
-  ] ++ lib.optionals (pythonOlder "3.8") [
-    cached-property
-    importlib-metadata
   ];
 
   nativeCheckInputs = [
@@ -58,6 +51,7 @@ buildPythonPackage rec {
   ];
 
   meta = with lib; {
+    changelog = "https://github.com/celery/kombu/releases/tag/v${version}";
     description = "Messaging library for Python";
     homepage = "https://github.com/celery/kombu";
     license = licenses.bsd3;

pkgs/development/python-modules/ldappool/default.nix

@@ -1,5 +1,14 @@
-{ lib, buildPythonPackage, fetchPypi
-, pbr, python-ldap, prettytable, fixtures, testresources, testtools }:
+{ lib
+, buildPythonPackage
+, fetchPypi
+, pbr
+, python-ldap
+, prettytable
+, six
+, fixtures
+, testresources
+, testtools
+}:
 
 buildPythonPackage rec {
   pname = "ldappool";
@@ -20,7 +29,7 @@ buildPythonPackage rec {
 
   nativeBuildInputs = [ pbr ];
 
-  propagatedBuildInputs = [ python-ldap prettytable ];
+  propagatedBuildInputs = [ python-ldap prettytable six ];
 
   nativeCheckInputs = [ fixtures testresources testtools ];
 

pkgs/development/python-modules/levenshtein/default.nix

@@ -13,7 +13,7 @@
 
 buildPythonPackage rec {
   pname = "levenshtein";
-  version = "0.21.0";
+  version = "0.21.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.6";
@@ -22,7 +22,7 @@ buildPythonPackage rec {
     owner = "maxbachmann";
     repo = "Levenshtein";
     rev = "refs/tags/v${version}";
-    hash = "sha256-j28OQkJymkh6tIGYLoZLad7OUUImjZqXdqM2zU3haac=";
+    hash = "sha256-I1kVGbZI1hQRNv0e44giWiMqmeqaqFZks20IyFQ9VIU=";
   };
 
   nativeBuildInputs = [

pkgs/development/python-modules/lxml/default.nix

@@ -8,13 +8,13 @@
 
 buildPythonPackage rec {
   pname = "lxml";
-  version = "4.9.2";
+  version = "4.9.3-3";
 
   src = fetchFromGitHub {
     owner = pname;
     repo = pname;
     rev = "refs/tags/lxml-${version}";
-    hash = "sha256-IHuTlcDbrZHvS6Gtx48IkznVU+9WxZT9XHUZf8M1WOE=";
+    hash = "sha256-Vrizi+6jUUEx7qODU4PAH5ZmvBIyT9H18+QpYB0m1f4=";
   };
 
   # setuptoolsBuildPhase needs dependencies to be passed through nativeBuildInputs

pkgs/development/python-modules/markdown/default.nix

@@ -11,7 +11,7 @@
 
 buildPythonPackage rec {
   pname = "markdown";
-  version = "3.4.3";
+  version = "3.4.4";
 
   disabled = pythonOlder "3.7";
 
@@ -21,7 +21,7 @@ buildPythonPackage rec {
     owner = "Python-Markdown";
     repo = "markdown";
     rev = "refs/tags/${version}";
-    hash = "sha256-o2MDsrSkR0fMA5I8AoQcJrpwNGO5lXJn8O47tQN7U6o=";
+    hash = "sha256-5PIIhbJVsotGwZ3BQ4x0I7WjgnGF3opNrn8J+xZCflg=";
   };
 
   nativeBuildInputs = [

pkgs/development/python-modules/meson-python/add-build-flags.sh

@@ -0,0 +1,6 @@
+# Add all of mesonFlags to -Csetup-args for pypa builds
+for f in $mesonFlags; do
+  pypaBuildFlags+=" -Csetup-args=$f"
+  # This requires pip>23.0.1, see: https://meson-python.readthedocs.io/en/latest/how-to-guides/config-settings.html
+  pipBuildFlags+=" --config-settings=setup-args=$f"
+done

pkgs/development/python-modules/meson-python/default.nix

@@ -13,13 +13,13 @@
 
 buildPythonPackage rec {
   pname = "meson-python";
-  version = "0.12.1";
+  version = "0.13.1";
   format = "pyproject";
 
   src = fetchPypi {
     inherit version;
     pname = "meson_python";
-    hash = "sha256-PVs+WB1wpYqXucEWp16Xp2zEtMfnX6Blj8g5I3Hi8sI=";
+    hash = "sha256-Y7MXAAFCXEL6TP7a25BRy9KJJf+O7XxA02ugCZ48dhg=";
   };
 
   nativeBuildInputs = [
@@ -39,6 +39,9 @@ buildPythonPackage rec {
   ] ++ lib.optionals (pythonOlder "3.10") [
     typing-extensions
   ];
+  setupHooks = [
+    ./add-build-flags.sh
+  ];
 
   # Ugly work-around. Drop ninja dependency.
   # We already have ninja, but it comes without METADATA.

pkgs/development/python-modules/mlflow/default.nix

@@ -38,16 +38,21 @@
 
 buildPythonPackage rec {
   pname = "mlflow";
-  version = "2.4.2";
+  version = "2.5.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-CxpxsP9Gedzo/yrpcz6ZbsC2wQbbk0EuDfhgb3kYZ8g=";
+    hash = "sha256-+ZKujqnHNQI0S69IxOxEeqnvv6iWW8CQho5hYyNPTrA=";
   };
 
+  postPatch = ''
+    substituteInPlace requirements/core-requirements.txt \
+      --replace "gunicorn<21" "gunicorn"
+  '';
+
   # Remove currently broken dependency `shap`, a model explainability package.
   # This seems quite unprincipled especially with tests not being enabled,
   # but not mlflow has a 'skinny' install option which does not require `shap`.

pkgs/development/python-modules/msgspec/default.nix

@@ -17,7 +17,7 @@ buildPythonPackage rec {
     owner = "jcrist";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-hxXywlDZoQ1DUL/03UngIdlHke8Ey4rDbEV4JKxiGps=";
+    hash = "sha256-IDu+Yu9BKk4/ITkNY6YLVmJ5zNR6F4LF1vj8QIEW108=";
   };
 
   # Requires libasan to be accessible

pkgs/development/python-modules/mypy/default.nix

@@ -2,6 +2,7 @@
 , stdenv
 , buildPythonPackage
 , fetchFromGitHub
+, fetchpatch
 , pythonOlder
 
 # build-system
@@ -31,7 +32,7 @@
 
 buildPythonPackage rec {
   pname = "mypy";
-  version = "1.3.0";
+  version = "1.4.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -40,9 +41,17 @@ buildPythonPackage rec {
     owner = "python";
     repo = "mypy";
     rev = "refs/tags/v${version}";
-    hash = "sha256-dfKuIyzgZo5hAZHighpXH78dHJ1PMbyCakyxF34CnMQ=";
+    hash = "sha256-2PeE/L9J6J0IuUpHZasemM8xxefNJrdzYnutgJjevWQ=";
   };
 
+  patches = [
+    (fetchpatch {
+      # pytest 7.4 compat
+      url = "https://github.com/python/mypy/commit/0a020fa73cf5339a80d81c5b44e17116a5c5307e.patch";
+      hash = "sha256-3HQPo+V7T8Gr92clXAt5QJUJPmhjnGjQgFq0qR0whfw=";
+    })
+  ];
+
   nativeBuildInputs = [
     mypy-extensions
     setuptools
@@ -108,6 +117,8 @@ buildPythonPackage rec {
     "mypy/test/testdaemon.py"
     # fails to find setuptools
     "mypyc/test/test_commandline.py"
+    # fails to find hatchling
+    "mypy/test/testpep561.py"
   ];
 
   meta = with lib; {

pkgs/development/python-modules/nbformat/default.nix

@@ -15,15 +15,13 @@
 
 buildPythonPackage rec {
   pname = "nbformat";
-  version = "5.7.3";
-
-  disabled = pythonOlder "3.7";
-
+  version = "5.9.1";
   format = "pyproject";
+  disabled = pythonOlder "3.8";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-SwIfyiTTp0e/TmJmlAM9eS1ZRwWCnl41sU7jNp+fZHc=";
+    hash = "sha256-On9S0EBjnL2KOJAhjIsP+5MhFYjFdEbJAJXjK6WIG10=";
   };
 
   nativeBuildInputs = [

pkgs/development/python-modules/numpy/default.nix

@@ -41,14 +41,14 @@ let
   };
 in buildPythonPackage rec {
   pname = "numpy";
-  version = "1.24.2";
+  version = "1.25.1";
   format = "setuptools";
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
     extension = "tar.gz";
-    hash = "sha256-ADqfUw6IDLLNF3y6GvciC5qkLe+cSvwqL8Pua+frKyI=";
+    hash = "sha256-mjqfOmFIDMCGEXtCaovYaGnCE/xAcuYG8BxOS2brkr8=";
   };
 
   patches = [
@@ -59,13 +59,6 @@ in buildPythonPackage rec {
       hash = "sha256-6Dbmf/RWvQJPTIjvchVaywHGcKCsgap/0wAp5WswuCo=";
     })
 
-    # Backport from 1.25. `platform.machine` returns `arm64` on aarch64-darwin, which causes
-    # differing results between `_selected_real_kind_func` and Fortran’s `selected_real_kind`.
-    (fetchpatch {
-      url = "https://github.com/numpy/numpy/commit/afcedf4b63f4a94187e6995c2adea0da3bb18e83.patch";
-      hash = "sha256-cxBoimX5a9wC2qUIGAo5o/M2E9+eV63bV2/wLmfDYKg=";
-    })
-
     # Disable `numpy/core/tests/test_umath.py::TestComplexFunctions::test_loss_of_precision[complex256]`
     # on x86_64-darwin because it fails under Rosetta 2 due to issues with trig functions and
     # 80-bit long double complex numbers.

pkgs/development/python-modules/objgraph/default.nix

@@ -4,7 +4,7 @@
 , graphviz
 , graphvizPkgs
 , isPyPy
-, pytestCheckHook
+, python
 , pythonOlder
 , substituteAll
 }:
@@ -14,7 +14,7 @@ buildPythonPackage rec {
   version = "3.6.0";
   format = "setuptools";
 
-  disabled = pythonOlder "3.5" || isPyPy;
+  disabled = pythonOlder "3.7" || isPyPy;
 
   src = fetchPypi {
     inherit pname version;
@@ -28,27 +28,27 @@ buildPythonPackage rec {
     })
   ];
 
-  propagatedBuildInputs = [
-    graphviz
-  ];
-
-  nativeCheckInputs = [
-    pytestCheckHook
-  ];
+  passthru.optional-dependencies = {
+    ipython = [
+      graphviz
+    ];
+  };
 
   pythonImportsCheck = [
     "objgraph"
   ];
 
-  pytestFlagsArray = [
-    "tests.py"
-  ];
+  checkPhase = ''
+    runHook preCheck
+    ${python.interpreter} tests.py
+    runHook postCheck
+  '';
 
   meta = with lib; {
     description = "Draws Python object reference graphs with graphviz";
     homepage = "https://mg.pov.lt/objgraph/";
     changelog = "https://github.com/mgedmin/objgraph/blob/${version}/CHANGES.rst";
     license = licenses.mit;
-    maintainers = with maintainers; [ ];
+    maintainers = with maintainers; [ dotlambda ];
   };
 }

pkgs/development/python-modules/openapi-schema-validator/default.nix

@@ -1,23 +1,32 @@
 { lib
 , buildPythonPackage
 , fetchFromGitHub
+, pythonOlder
+
+# build-system
 , poetry-core
-, pytestCheckHook
-, isodate
+
+# propagates
 , jsonschema
+, jsonschema-specifications
 , rfc3339-validator
+
+# tests
+, pytestCheckHook
 }:
 
 buildPythonPackage rec {
   pname = "openapi-schema-validator";
-  version = "0.4.4";
+  version = "0.6.0";
   format = "pyproject";
 
+  disabled = pythonOlder "3.8";
+
   src = fetchFromGitHub {
     owner = "p1c2u";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-2XTCdp9dfzhNKCpq71pt7yEZm9abiEmFHD/114W+jOQ=";
+    hash = "sha256-859v6KqIRfUq4d/KbkvGnGqlxz6BXTl+tKQHPhtkTH0=";
   };
 
   postPatch = ''
@@ -30,6 +39,7 @@ buildPythonPackage rec {
 
   propagatedBuildInputs = [
     jsonschema
+    jsonschema-specifications
     rfc3339-validator
   ];
 
@@ -40,6 +50,7 @@ buildPythonPackage rec {
   pythonImportsCheck = [ "openapi_schema_validator" ];
 
   meta = with lib; {
+    changelog = "https://github.com/python-openapi/openapi-schema-validator/releases/tag/${version}";
     description = "Validates OpenAPI schema against the OpenAPI Schema Specification v3.0";
     homepage = "https://github.com/p1c2u/openapi-schema-validator";
     license = licenses.bsd3;

pkgs/development/python-modules/openapi-spec-validator/default.nix

@@ -2,6 +2,8 @@
 , buildPythonPackage
 , pythonOlder
 , fetchFromGitHub
+
+# build-system
 , poetry-core
 
 # propagates
@@ -10,31 +12,30 @@
 , jsonschema-spec
 , lazy-object-proxy
 , openapi-schema-validator
-, pyyaml
-
-# optional
-, requests
 
 # tests
-, mock
 , pytestCheckHook
 }:
 
 buildPythonPackage rec {
   pname = "openapi-spec-validator";
-  version = "0.5.6";
+  version = "0.6.0";
   format = "pyproject";
 
-  disabled = pythonOlder "3.7";
+  disabled = pythonOlder "3.8";
 
   # no tests via pypi sdist
   src = fetchFromGitHub {
     owner = "p1c2u";
-    repo = pname;
+    repo = "openapi-spec-validator";
     rev = "refs/tags/${version}";
-    hash = "sha256-BIGHaZhrEc7wcIesBIXdVRzozllCNOz67V+LmQfZ8oY=";
+    hash = "sha256-sGr4dH6Twyi4OeCAXZiboN75dYZ6wJ0pWMzV9zOfee0=";
   };
 
+  postPatch = ''
+    sed -i '/--cov/d' pyproject.toml
+  '';
+
   nativeBuildInputs = [
     poetry-core
   ];
@@ -48,14 +49,6 @@ buildPythonPackage rec {
     importlib-resources
   ];
 
-  passthru.optional-dependencies.requests = [
-    requests
-  ];
-
-  preCheck = ''
-    sed -i '/--cov/d' pyproject.toml
-  '';
-
   nativeCheckInputs = [
     pytestCheckHook
   ];

pkgs/development/python-modules/oslotest/default.nix

@@ -3,6 +3,7 @@
 , fetchPypi
 , fixtures
 , pbr
+, six
 , subunit
 , callPackage
 }:
@@ -10,6 +11,7 @@
 buildPythonPackage rec {
   pname = "oslotest";
   version = "4.5.0";
+  format = "setuptools";
 
   src = fetchPypi {
     inherit pname version;
@@ -20,6 +22,7 @@ buildPythonPackage rec {
 
   propagatedBuildInputs = [
     fixtures
+    six
     subunit
   ];
 

pkgs/development/python-modules/pandas/default.nix

@@ -2,114 +2,218 @@
 , stdenv
 , buildPythonPackage
 , fetchPypi
-, python
 , pythonOlder
+
+# build-system
 , cython
+, setuptools
+, versioneer
+
+# propagates
 , numpy
 , python-dateutil
 , pytz
-# Test inputs
+, tzdata
+
+# optionals
+, beautifulsoup4
+, bottleneck
+, blosc2
+, brotlipy
+, fsspec
+, gcsfs
+, html5lib
+, jinja2
+, lxml
+, matplotlib
+, numba
+, numexpr
+, odfpy
+, openpyxl
+, psycopg2
+, pyarrow
+, pymysql
+, pyqt5
+, pyreadstat
+, python-snappy
+, qtpy
+, s3fs
+, scipy
+, sqlalchemy
+, tables
+, tabulate
+, xarray
+, xlrd
+, xlsxwriter
+, zstandard
+
+# tests
+, adv_cmds
+, glibc
 , glibcLocales
 , hypothesis
-, jinja2
 , pytestCheckHook
 , pytest-xdist
 , pytest-asyncio
-, xlsxwriter
-# Darwin inputs
+, python
 , runtimeShell
-, libcxx
 }:
 
 buildPythonPackage rec {
   pname = "pandas";
-  version = "1.5.3";
-  format = "setuptools";
+  version = "2.0.3";
+  format = "pyproject";
+
   disabled = pythonOlder "3.8";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-dKP9flp+wFLxgyc9x7Cs06hj7fdSD106F2XAT/2zsLE=";
+    hash = "sha256-wC83Kojg0X820wk6ZExzz8F4jodqfEvLQCCndRLiBDw=";
   };
 
-  nativeBuildInputs = [ cython ];
+  nativeBuildInputs = [
+    setuptools
+    cython
+    numpy
+    versioneer
+  ] ++ versioneer.optional-dependencies.toml;
 
-  buildInputs = lib.optional stdenv.isDarwin libcxx;
+  enableParallelBuilding = true;
 
   propagatedBuildInputs = [
     numpy
     python-dateutil
     pytz
+    tzdata
   ];
 
-  nativeCheckInputs = [
-    glibcLocales
-    hypothesis
-    jinja2
-    pytest-asyncio
-    pytest-xdist
-    pytestCheckHook
-    xlsxwriter
-  ];
+  passthru.optional-dependencies = let
+    extras = {
+      aws = [
+        s3fs
+      ];
+      clipboard = [
+        pyqt5
+        qtpy
+      ];
+      compression = [
+        brotlipy
+        python-snappy
+        zstandard
+      ];
+      computation = [
+        scipy
+        xarray
+      ];
+      excel = [
+        odfpy
+        openpyxl
+        # TODO: pyxlsb
+        xlrd
+        xlsxwriter
+      ];
+      feather = [
+        pyarrow
+      ];
+      fss = [
+        fsspec
+      ];
+      gcp = [
+        gcsfs
+        # TODO: pandas-gqb
+      ];
+      hdf5 = [
+        blosc2
+        tables
+      ];
+      html = [
+        beautifulsoup4
+        html5lib
+        lxml
+      ];
+      mysql = [
+        sqlalchemy
+        pymysql
+      ];
+      output_formatting = [
+        jinja2
+        tabulate
+      ];
+      parquet = [
+        pyarrow
+      ];
+      performance = [
+        bottleneck
+        numba
+        numexpr
+      ];
+      plot = [
+        matplotlib
+      ];
+      postgresql = [
+        sqlalchemy
+        psycopg2
+      ];
+      spss = [
+        pyreadstat
+      ];
+      sql-other = [
+        sqlalchemy
+      ];
+      xml = [
+        lxml
+      ];
+    };
+  in extras // {
+    all = lib.concatLists (lib.attrValues extras);
+  };
 
   # Doesn't work with -Werror,-Wunused-command-line-argument
   # https://github.com/NixOS/nixpkgs/issues/39687
   hardeningDisable = lib.optional stdenv.cc.isClang "strictoverflow";
 
-  doCheck = !stdenv.isAarch32 && !stdenv.isAarch64; # upstream doesn't test this architecture
+  nativeCheckInputs = [
+    glibcLocales
+    hypothesis
+    pytest-asyncio
+    pytest-xdist
+    pytestCheckHook
+  ] ++ lib.optionals (stdenv.isLinux) [
+    # for locale executable
+    glibc
+  ] ++ lib.optionals (stdenv.isDarwin) [
+    # for locale executable
+    adv_cmds
+  ];
 
   # don't max out build cores, it breaks tests
   dontUsePytestXdist = true;
 
+  __darwinAllowLocalNetworking = true;
+
   pytestFlagsArray = [
     # https://github.com/pandas-dev/pandas/blob/main/test_fast.sh
     "--skip-db"
     "--skip-slow"
     "--skip-network"
-    "-m" "'not single_cpu'"
+    "-m" "'not single_cpu and not slow_arm'"
     "--numprocesses" "4"
   ];
 
   disabledTests = [
-    # Locale-related
-    "test_names"
-    "test_dt_accessor_datetime_name_accessors"
-    "test_datetime_name_accessors"
-    # Disable IO related tests because IO data is no longer distributed
-    "io"
-    # Tries to import from pandas.tests post install
-    "util_in_top_level"
-    # Tries to import compiled C extension locally
-    "test_missing_required_dependency"
-    # AssertionError with 1.2.3
-    "test_from_coo"
-    # AssertionError: No common DType exists for the given inputs
-    "test_comparison_invalid"
-    # AssertionError: Regex pattern '"quotechar" must be string, not int'
-    "python-kwargs2"
-    # Tests for rounding errors and fails if we have better precision
-    # than expected, e.g. on amd64 with FMA or on arm64
-    # https://github.com/pandas-dev/pandas/issues/38921
-    "test_rolling_var_numerical_issues"
-    # Requires mathplotlib
-    "test_subset_for_boolean_cols"
-    # DeprecationWarning from numpy
-    "test_sort_values_sparse_no_warning"
-  ] ++ lib.optionals stdenv.isDarwin [
-    "test_locale"
-    "test_clipboard"
-    # ValueError: cannot reindex on an axis with duplicate labels
-    #
-    # Attempts to reproduce this problem outside of Hydra failed.
-    "test_reindex_timestamp_with_fold"
+    # AssertionError: Did not see expected warning of class 'FutureWarning'
+    "test_parsing_tzlocal_deprecated"
+  ] ++ lib.optionals (stdenv.isDarwin && stdenv.isAarch64) [
+    # tests/generic/test_finalize.py::test_binops[and_-args4-right] - AssertionError: assert {} == {'a': 1}
+    "test_binops"
   ];
 
   # Tests have relative paths, and need to reference compiled C extensions
   # so change directory where `import .test` is able to be resolved
   preCheck = ''
-    cd $out/${python.sitePackages}/pandas
+    export HOME=$TMPDIR
     export LC_ALL="en_US.UTF-8"
-    PYTHONPATH=$out/${python.sitePackages}:$PYTHONPATH
+    cd $out/${python.sitePackages}/pandas
   ''
   # TODO: Get locale and clipboard support working on darwin.
   #       Until then we disable the tests.
@@ -121,19 +225,24 @@ buildPythonPackage rec {
     export PATH=$(pwd):$PATH
   '';
 
-  enableParallelBuilding = true;
-
-  pythonImportsCheck = [ "pandas" ];
+  pythonImportsCheck = [
+    "pandas"
+  ];
 
   meta = with lib; {
     # https://github.com/pandas-dev/pandas/issues/14866
     # pandas devs are no longer testing i686 so safer to assume it's broken
     broken = stdenv.isi686;
-    homepage = "https://pandas.pydata.org/";
     changelog = "https://pandas.pydata.org/docs/whatsnew/index.html";
-    description = "Python Data Analysis Library";
+    description = "Powerful data structures for data analysis, time series, and statistics";
+    downloadPage = "https://github.com/pandas-dev/pandas";
+    homepage = "https://pandas.pydata.org";
     license = licenses.bsd3;
+    longDescription = ''
+      Flexible and powerful data analysis / manipulation library for
+      Python, providing labeled data structures similar to R data.frame
+      objects, statistical functions, and much more.
+    '';
     maintainers = with maintainers; [ raskin fridh knedlsepp ];
-    platforms = platforms.unix;
   };
 }

pkgs/development/python-modules/pdm-backend/default.nix

@@ -15,14 +15,14 @@
 
 buildPythonPackage rec {
   pname = "pdm-backend";
-  version = "2.1.1";
+  version = "2.1.4";
   format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "pdm-project";
     repo = "pdm-backend";
     rev = "refs/tags/${version}";
-    hash = "sha256-g8VL5nO180XplMgbbeeJIp6lmbWcMKdY/IftlkL6e5U=";
+    hash = "sha256-46HTamiy+8fiGVeviYqXsjwu+PEBE38y19cBVRc+zm0=";
   };
 
   env.PDM_BUILD_SCM_VERSION = version;

pkgs/development/python-modules/pdm-pep517/default.nix

@@ -9,12 +9,12 @@
 
 buildPythonPackage rec {
   pname = "pdm-pep517";
-  version = "1.1.2";
+  version = "1.1.4";
   format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-1PpzWmRffpWmvrNKK19+jgDZPdBDnXPzHMguQLW4/c4=";
+    hash = "sha256-f0kSHnC0Lcopb6yWIhDdLaB6OVdfxWcxN61mFjOyzz8=";
   };
 
   preCheck = ''

pkgs/development/python-modules/pikepdf/default.nix

@@ -4,7 +4,6 @@
 , fetchFromGitHub
 , hypothesis
 , pythonOlder
-, importlib-metadata
 , jbig2dec
 , deprecation
 , lxml
@@ -19,14 +18,13 @@
 , python-xmp-toolkit
 , qpdf
 , setuptools
-, setuptools-scm
 , substituteAll
 , wheel
 }:
 
 buildPythonPackage rec {
   pname = "pikepdf";
-  version = "7.2.0";
+  version = "8.2.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
@@ -41,7 +39,7 @@ buildPythonPackage rec {
     postFetch = ''
       rm "$out/.git_archival.txt"
     '';
-    hash = "sha256-acGIhIWC1nUQiN0iwb1kLKxz+ytIqYIW4VXF45Tx50g=";
+    hash = "sha256-8uPPEoLxoMRq/tkpThatwjPHZIMYQ8lNL6fLcG+nsnw=";
   };
 
   patches = [
@@ -57,8 +55,6 @@ buildPythonPackage rec {
       --replace "shims_enabled = not cflags_defined" "shims_enabled = False"
   '';
 
-  SETUPTOOLS_SCM_PRETEND_VERSION = version;
-
   buildInputs = [
     qpdf
   ];
@@ -66,7 +62,6 @@ buildPythonPackage rec {
   nativeBuildInputs = [
     pybind11
     setuptools
-    setuptools-scm
     wheel
   ];
 
@@ -85,8 +80,6 @@ buildPythonPackage rec {
     lxml
     packaging
     pillow
-  ] ++ lib.optionals (pythonOlder "3.8") [
-    importlib-metadata
   ];
 
   pythonImportsCheck = [ "pikepdf" ];

pkgs/development/python-modules/pillow/default.nix

@@ -13,25 +13,17 @@
 
 import ./generic.nix (rec {
   pname = "pillow";
-  version = "9.5.0";
-  format = "setuptools";
+  version = "10.0.0";
+  format = "pyproject";
 
-  disabled = pythonOlder "3.7";
+  disabled = pythonOlder "3.8";
 
   src = fetchPypi {
     pname = "Pillow";
     inherit version;
-    hash = "sha256-v1SEedM2cm16Ds6252fhefveN4M65CeUYCYxoHDWMPE=";
+    hash = "sha256-nIK1s+BDx68NlXktDSDM9o9hof7Gs1MOcYtohCJyc5Y=";
   };
 
-  patches = [
-    (fetchpatch {
-      # Fixed type handling for include and lib directories; Remove with 10.0.0
-      url = "https://github.com/python-pillow/Pillow/commit/0ec0a89ead648793812e11739e2a5d70738c6be5.patch";
-      hash = "sha256-m5R5fLflnbJXbRxFlTjT2X3nKdC05tippMoJUDsJmy0=";
-    })
-  ];
-
   passthru.tests = {
     inherit imageio matplotlib pilkit pydicom reportlab;
   };

pkgs/development/python-modules/pint/default.nix

@@ -2,10 +2,15 @@
 , buildPythonPackage
 , fetchPypi
 , pythonOlder
+
+# build-system
+, setuptools
 , setuptools-scm
-, importlib-metadata
-, packaging
-# Check Inputs
+
+# propagates
+, typing-extensions
+
+# tests
 , pytestCheckHook
 , pytest-subtests
 , numpy
@@ -15,20 +20,25 @@
 
 buildPythonPackage rec {
   pname = "pint";
-  version = "0.20.1";
+  version = "0.22";
+  format = "pyproject";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit version;
     pname = "Pint";
-    hash = "sha256-OHzwQHjcff5KcIAzuq1Uq2HYKrBsTuPUkiseRdViYGc=";
+    hash = "sha256-LROfarvPMBbK19POwFcH/pCKxPmc9Zrt/W7mZ7emRDM=";
   };
 
-  nativeBuildInputs = [ setuptools-scm ];
+  nativeBuildInputs = [
+    setuptools
+    setuptools-scm
+  ];
 
-  propagatedBuildInputs = [ packaging ]
-    ++ lib.optionals (pythonOlder "3.8") [ importlib-metadata ];
+  propagatedBuildInputs = [
+    typing-extensions
+  ];
 
   nativeCheckInputs = [
     pytestCheckHook
@@ -38,13 +48,17 @@ buildPythonPackage rec {
     uncertainties
   ];
 
-  dontUseSetuptoolsCheck = true;
-
   preCheck = ''
     export HOME=$(mktemp -d)
   '';
 
+  disabledTests = [
+    # https://github.com/hgrecco/pint/issues/1825
+    "test_equal_zero_nan_NP"
+  ];
+
   meta = with lib; {
+    changelog = "https://github.com/hgrecco/pint/blob/${version}/CHANGES";
     description = "Physical quantities module";
     license = licenses.bsd3;
     homepage = "https://github.com/hgrecco/pint/";

pkgs/development/python-modules/platformdirs/default.nix

@@ -11,7 +11,7 @@
 
 buildPythonPackage rec {
   pname = "platformdirs";
-  version = "3.5.1";
+  version = "3.9.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -20,7 +20,7 @@ buildPythonPackage rec {
     owner = pname;
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-/qi22jiF+P7XcG/D+dxoOrHk89amdBoGewrTqZZOsoM=";
+    hash = "sha256-gBiXdnBWp0SlpE6TQPONTXEsQ2XFGCANGdNM/gv7V5s=";
   };
 
   SETUPTOOLS_SCM_PRETEND_VERSION = version;

pkgs/development/python-modules/pluggy/default.nix

@@ -1,31 +1,40 @@
 { buildPythonPackage
 , lib
-, fetchPypi
+, fetchFromGitHub
 , setuptools-scm
 , pythonOlder
 , importlib-metadata
+, callPackage
 }:
 
 buildPythonPackage rec {
   pname = "pluggy";
-  version = "1.0.0";
+  version = "1.2.0";
   format = "pyproject";
 
-  src = fetchPypi {
-    inherit pname version;
-    sha256 = "4224373bacce55f955a878bf9cfa763c1e360858e330072059e10bad68531159";
+  src = fetchFromGitHub {
+    owner = "pytest-dev";
+    repo = "pluggy";
+    rev = "refs/tags/${version}";
+    hash = "sha256-SzJu7ITdmUgusn8sz6fRBpxTMQncWIViP5NCAj4q4GM=";
   };
 
   nativeBuildInputs = [ setuptools-scm ];
 
+  env.SETUPTOOLS_SCM_PRETEND_VERSION = version;
+
   propagatedBuildInputs = lib.optionals (pythonOlder "3.8") [
     importlib-metadata
   ];
 
   # To prevent infinite recursion with pytest
   doCheck = false;
+  passthru.tests = {
+    pytest = callPackage ./tests.nix { };
+  };
 
   meta = {
+    changelog = "https://github.com/pytest-dev/pluggy/blob/${src.rev}/CHANGELOG.rst";
     description = "Plugin and hook calling mechanisms for Python";
     homepage = "https://github.com/pytest-dev/pluggy";
     license = lib.licenses.mit;

pkgs/development/python-modules/pluggy/tests.nix

@@ -0,0 +1,20 @@
+{ buildPythonPackage
+, pluggy
+, pytestCheckHook
+}:
+
+buildPythonPackage {
+  pname = "pluggy-tests";
+  inherit (pluggy) version;
+  format = "other";
+
+  inherit (pluggy) src;
+
+  dontBuild = true;
+  dontInstall = true;
+
+  nativeCheckInputs = [
+    pluggy
+    pytestCheckHook
+  ];
+}

pkgs/development/python-modules/poetry-core/default.nix

@@ -11,7 +11,6 @@
 , pytest-mock
 , pytestCheckHook
 , setuptools
-, tomlkit
 , virtualenv
 }:
 
@@ -54,7 +53,6 @@ buildPythonPackage rec {
     pytest-mock
     pytestCheckHook
     setuptools
-    tomlkit
     virtualenv
   ];
 

pkgs/development/python-modules/prance/default.nix

@@ -18,7 +18,7 @@
 
 buildPythonPackage rec {
   pname = "prance";
-  version = "0.22.02.22.0";
+  version = "23.06.21.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
@@ -28,7 +28,7 @@ buildPythonPackage rec {
     repo = pname;
     rev = "v${version}";
     fetchSubmodules = true;
-    hash = "sha256-NtIbZp34IcMYJzaNQVL9GLdNS3NYOCRoWS1wGg/gLVA=";
+    hash = "sha256-p+LZbQal4DPeMp+eJ2O83rCaL+QIUDcU34pZhYdN4bE=";
   };
 
   postPatch = ''
@@ -70,6 +70,7 @@ buildPythonPackage rec {
     "test_convert_defaults"
     "test_convert_output"
     "test_fetch_url_http"
+    "test_openapi_spec_validator_validate_failure"
   ];
   pythonImportsCheck = [ "prance" ];
 

pkgs/development/python-modules/pybind11/default.nix

@@ -24,13 +24,13 @@
   } ./setup-hook.sh;
 in buildPythonPackage rec {
   pname = "pybind11";
-  version = "2.10.4";
+  version = "2.11.1";
 
   src = fetchFromGitHub {
     owner = "pybind";
     repo = pname;
     rev = "v${version}";
-    hash = "sha256-n7nLEG2+sSR9wnxM+C8FWc2B+Mx74Pan1+IQf+h2bGU=";
+    hash = "sha256-sO/Fa+QrAKyq2EYyYMcjPrYI+bdJIrDoj6L3JHoDo3E=";
   };
 
   postPatch = ''
@@ -87,7 +87,7 @@ in buildPythonPackage rec {
     "tests/extra_setuptools/test_setuphelper.py"
   ];
 
-  disabledTests = lib.optionals (stdenv.isDarwin) [
+  disabledTests = lib.optionals stdenv.isDarwin [
     # expects KeyError, gets RuntimeError
     # https://github.com/pybind/pybind11/issues/4243
     "test_cross_module_exception_translator"

pkgs/development/python-modules/pycryptodome/default.nix

@@ -10,14 +10,14 @@ let
 in
 buildPythonPackage rec {
   pname = "pycryptodome";
-  version = "3.17.0";
+  version = "3.18.0";
   format = "setuptools";
 
   src = fetchFromGitHub {
     owner = "Legrandin";
     repo = "pycryptodome";
-    rev = "v${version}";
-    hash = "sha256-xsfd+dbaNOPuD0ulvpLPBPtcFgmJqX1VuunwNMcqh+Q=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-6oXXy18KlSjfyZhfMnIgnu34u/9sG0TPYvPJ8ovTqMA=";
   };
 
   postPatch = ''
@@ -36,6 +36,7 @@ buildPythonPackage rec {
   meta = with lib; {
     description = "Self-contained cryptographic library";
     homepage = "https://github.com/Legrandin/pycryptodome";
+    changelog = "https://github.com/Legrandin/pycryptodome/blob/v${version}/Changelog.rst";
     license = with licenses; [ bsd2 /* and */ asl20 ];
     maintainers = with maintainers; [ fab ];
   };

pkgs/development/python-modules/pygments-better-html/default.nix

@@ -7,12 +7,12 @@
 
 buildPythonPackage rec {
   pname = "pygments_better_html";
-  version = "0.1.4";
+  version = "0.1.5";
   disabled = ! isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "028szd3k295yhz943bj19i4kx6f0pfh1fd2q14id0g84dl4i49dm";
+    sha256 = "sha256-SLAe5ubIGEchUNoHCct6CWisBja3WNEfpE48v9CTzPQ=";
   };
 
   propagatedBuildInputs = [ pygments ];

pkgs/development/python-modules/pygments/default.nix

@@ -1,8 +1,11 @@
 { lib
 , buildPythonPackage
 , fetchPypi
-, docutils
-, lxml
+
+# build-system
+, setuptools
+
+# tests
 , pytestCheckHook
 , wcag-contrast-ratio
 }:
@@ -10,22 +13,23 @@
 let pygments = buildPythonPackage
   rec {
     pname = "pygments";
-    version = "2.14.0";
+    version = "2.15.1";
+    format = "pyproject";
 
     src = fetchPypi {
       pname = "Pygments";
       inherit version;
-      hash = "sha256-s+0GqeismpquWm9dvniopYZV0XtDuTwHjwlN3Edq4pc=";
+      hash = "sha256-is5NPB3UgYlLIAX1YOrQ+fGe5k/pgzZr4aIeFx0Sd1w=";
     };
 
-    propagatedBuildInputs = [
-      docutils
+    nativeBuildInputs = [
+      setuptools
     ];
 
     # circular dependencies if enabled by default
     doCheck = false;
+
     nativeCheckInputs = [
-      lxml
       pytestCheckHook
       wcag-contrast-ratio
     ];
@@ -35,13 +39,16 @@ let pygments = buildPythonPackage
       "tests/examplefiles/bash/ltmain.sh"
     ];
 
-    pythonImportsCheck = [ "pygments" ];
+    pythonImportsCheck = [
+      "pygments"
+    ];
 
     passthru.tests = {
       check = pygments.overridePythonAttrs (_: { doCheck = true; });
     };
 
     meta = with lib; {
+      changelog = "https://github.com/pygments/pygments/releases/tag/${version}";
       homepage = "https://pygments.org/";
       description = "A generic syntax highlighter";
       mainProgram = "pygmentize";

pkgs/development/python-modules/pyjwt/default.nix

@@ -11,7 +11,7 @@
 
 buildPythonPackage rec {
   pname = "pyjwt";
-  version = "2.7.0";
+  version = "2.8.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -19,7 +19,7 @@ buildPythonPackage rec {
   src = fetchPypi {
     pname = "PyJWT";
     inherit version;
-    hash = "sha256-vWyko8QoXBotQ0nloDX9+PuU4EzND8vmuiidrpzD4HQ=";
+    hash = "sha256-V+KNFW49XBAIjgxoq7kL+sPfgrQKcb0NqiDGXM1cI94=";
   };
 
   postPatch = ''
@@ -45,6 +45,11 @@ buildPythonPackage rec {
     pytestCheckHook
   ] ++ (lib.flatten (lib.attrValues passthru.optional-dependencies));
 
+  disabledTests = [
+    # requires internet connection
+    "test_get_jwt_set_sslcontext_default"
+  ];
+
   pythonImportsCheck = [ "jwt" ];
 
   meta = with lib; {

pkgs/development/python-modules/pylint/default.nix

@@ -22,7 +22,7 @@
 
 buildPythonPackage rec {
   pname = "pylint";
-  version = "2.16.2";
+  version = "2.17.5";
   format = "pyproject";
 
   disabled = pythonOlder "3.7.2";
@@ -31,7 +31,7 @@ buildPythonPackage rec {
     owner = "PyCQA";
     repo = pname;
     rev = "v${version}";
-    hash = "sha256-xNCGf4CsxEKScIn6dl2Ka31P6bhMo5fTs9TIQz+vPiM=";
+    hash = "sha256-cmH6Q6/XJXx8EXDIsik1Aheu9hYGvvlNvWBUCdmC3P8=";
   };
 
   nativeBuildInputs = [
@@ -68,6 +68,7 @@ buildPythonPackage rec {
     # implementation relies on the '__implements__'  attribute proposed
     # in PEP 245, which was rejected in 2006.
     "-W" "ignore::DeprecationWarning"
+    "-v"
   ];
 
   dontUseSetuptoolsCheck = true;

pkgs/development/python-modules/pyopenssl/default.nix

@@ -13,13 +13,13 @@
 
 buildPythonPackage rec {
   pname = "pyopenssl";
-  version = "23.1.1";
+  version = "23.2.0";
   format = "setuptools";
 
   src = fetchPypi {
     pname = "pyOpenSSL";
     inherit version;
-    hash = "sha256-hBSYub7GFiOxtsR+u8AjZ8B9YODhlfGXkIF/EMyNsLc=";
+    hash = "sha256-J2+TH1WkUufeppxxc+mE6ypEB85BPJGKo0tV+C+bi6w=";
   };
 
   outputs = [

pkgs/development/python-modules/pyopnsense/default.nix

@@ -4,10 +4,10 @@
 , fixtures
 , mock
 , pbr
-, pytest-cov
 , pytestCheckHook
 , pythonOlder
 , requests
+, testtools
 }:
 
 buildPythonPackage rec {
@@ -29,8 +29,8 @@ buildPythonPackage rec {
   nativeCheckInputs = [
     fixtures
     mock
-    pytest-cov
     pytestCheckHook
+    testtools
   ];
 
   pythonImportsCheck = [

pkgs/development/python-modules/pytest-asyncio/default.nix

@@ -12,7 +12,7 @@
 
 buildPythonPackage rec {
   pname = "pytest-asyncio";
-  version = "0.20.3";
+  version = "0.21.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -21,7 +21,7 @@ buildPythonPackage rec {
     owner = "pytest-dev";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-oq28wJ/Tq4yuQ/98tdzYKDyatpliS0Xcbc6T46ZTP7I=";
+    hash = "sha256-Wpo8MpCPGiXrckT2x5/yBYtGlzso/L2urG7yGc7SPkA=";
   };
 
   outputs = [
@@ -54,7 +54,7 @@ buildPythonPackage rec {
   meta = with lib; {
     description = "Library for testing asyncio code with pytest";
     homepage = "https://github.com/pytest-dev/pytest-asyncio";
-    changelog = "https://github.com/pytest-dev/pytest-asyncio/blob/v${version}/CHANGELOG.rst";
+    changelog = "https://github.com/pytest-dev/pytest-asyncio/blob/v${version}/docs/source/reference/changelog.rst";
     license = licenses.asl20;
     maintainers = with maintainers; [ dotlambda ];
   };

pkgs/development/python-modules/pytest-asyncio/tests.nix

@@ -10,6 +10,8 @@ buildPythonPackage {
   pname = "pytest-asyncio-tests";
   inherit (pytest-asyncio) version;
 
+  format = "other";
+
   src = pytest-asyncio.testout;
 
   dontBuild = true;

pkgs/development/python-modules/pytest-cov/default.nix

@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "pytest-cov";
-  version = "4.0.0";
+  version = "4.1.0";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-mWt5795kM829AIiHLbxfs+1/4VeLaM27pjTxS7jdBHA=";
+    hash = "sha256-OQSxPfv+xH8AO453/VtYnNEZBKId3xqzimTyBNahDvY=";
   };
 
   buildInputs = [ pytest ];

pkgs/development/python-modules/pytest-env/default.nix

@@ -9,13 +9,13 @@
 
 buildPythonPackage rec {
   pname = "pytest-env";
-  version = "0.8.1";
+  version = "0.8.2";
   format = "pyproject";
 
   src = fetchPypi {
     pname = "pytest_env";
     inherit version;
-    hash = "sha256-17L1Jz7G0eIhdXmYvC9Q0kdO19C5MxuSVWAR+txOmr8=";
+    hash = "sha256-uu2bO2uud711uSOODtHuaQOkKAaunWrv+4dUzVWE1P8=";
   };
 
   nativeBuildInputs = [

pkgs/development/python-modules/pytest-factoryboy/default.nix

@@ -1,42 +1,59 @@
 { lib
 , buildPythonPackage
-, factory_boy
 , fetchFromGitHub
-, inflection
-, mock
+
+# build-system
+, poetry-core
+
+# unpropagated
 , pytest
-, pytestcache
+
+# propagated
+, inflection
+, factory_boy
+, typing-extensions
+
+# tests
 , pytestCheckHook
-, pytest-cov
 }:
 
 buildPythonPackage rec {
   pname = "pytest-factoryboy";
-  version = "2.1.0";
+  version = "2.5.1";
+  format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "pytest-dev";
     repo = "pytest-factoryboy";
     rev = version;
-    sha256 = "0v6b4ly0p8nknpnp3f4dbslfsifzzjx2vv27rfylx04kzdhg4m9p";
+    sha256 = "sha256-zxgezo2PRBKs0mps0qdKWtBygunzlaxg8s9BoBaU1Ig=";
   };
 
-  buildInputs = [ pytest ];
+  nativeBuildInputs = [
+    poetry-core
+  ];
+
+  buildInputs = [
+    pytest
+  ];
 
   propagatedBuildInputs = [
     factory_boy
     inflection
+    typing-extensions
+  ];
+
+  pythonImportsCheck = [
+    "pytest_factoryboy"
   ];
 
   nativeCheckInputs = [
-    mock
     pytestCheckHook
-    pytestcache
-    pytest-cov
   ];
 
-  pytestFlagsArray = [ "--ignore=docs" ];
-  pythonImportsCheck = [ "pytest_factoryboy" ];
+  pytestFlagsArray = [
+    "--ignore=docs"
+  ];
 
   meta = with lib; {
     description = "Integration of factory_boy into the pytest runner";

pkgs/development/python-modules/pytest-httpserver/default.nix

@@ -11,7 +11,7 @@
 
 buildPythonPackage rec {
   pname = "pytest-httpserver";
-  version = "1.0.6";
+  version = "1.0.7";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -20,7 +20,7 @@ buildPythonPackage rec {
     owner = "csernazs";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-LY5Ur0cIcsNrgvyQlY2E479ZzRcuwqTuiT2MtRupVcs=";
+    hash = "sha256-bjysG+7niSUBl8YMWR8pr7oOz9GDbSfq3PeloYBkq3s=";
   };
 
   nativeBuildInputs = [