snakemake: 9.5.1 -> 9.11.8 (#446245)

pkgs/by-name/sn/snakemake/package.nix

@@ -10,14 +10,14 @@
 
 python3Packages.buildPythonApplication rec {
   pname = "snakemake";
-  version = "9.5.1";
+  version = "9.11.8";
   pyproject = true;
 
   src = fetchFromGitHub {
     owner = "snakemake";
     repo = "snakemake";
     tag = "v${version}";
-    hash = "sha256-cSFqPSLeM7hw1bxQZ2FhlHUP+O3iyrwBz4+Jz90Zck8=";
+    hash = "sha256-fQCpQ3LB0Q1USZ9YTEniR5iKq68Zri9+14zqa/jzO2o=";
   };
 
   postPatch = ''
@@ -58,6 +58,7 @@ python3Packages.buildPythonApplication rec {
     snakemake-interface-logger-plugins
     snakemake-interface-storage-plugins
     snakemake-interface-report-plugins
+    snakemake-interface-scheduler-plugins
     stopit
     tabulate
     throttler
@@ -140,6 +141,11 @@ python3Packages.buildPythonApplication rec {
     # Requires snakemake-storage-plugin-http
     "test_keep_local"
     "test_retrieve"
+
+    # Requires conda
+    "test_jupyter_notebook"
+    "test_jupyter_notebook_nbconvert"
+    "test_jupyter_notebook_draft"
   ]
   ++ lib.optionals stdenv.hostPlatform.isDarwin [
     # Unclear failure:

pkgs/development/python-modules/snakemake-interface-common/default.nix

@@ -4,43 +4,40 @@
   buildPythonPackage,
   configargparse,
   fetchFromGitHub,
-  poetry-core,
-  pythonOlder,
-  pytestCheckHook,
+  setuptools,
 }:
 
 buildPythonPackage rec {
   pname = "snakemake-interface-common";
-  version = "1.17.4";
+  version = "1.22.0";
   pyproject = true;
 
-  disabled = pythonOlder "3.8";
-
   src = fetchFromGitHub {
     owner = "snakemake";
     repo = "snakemake-interface-common";
     tag = "v${version}";
-    hash = "sha256-PMEs7yeVfSnZKbabLrbXfIKCIPteNV1wzbt9RIDG3qU=";
+    hash = "sha256-DxbB/UaBkLbG18CGHyDMo7dmRlVY2tD3BhO0MShbnq4=";
   };
 
-  build-system = [ poetry-core ];
+  build-system = [ setuptools ];
 
   dependencies = [
     argparse-dataclass
     configargparse
   ];
 
-  nativeCheckInputs = [ pytestCheckHook ];
-
   pythonImportsCheck = [ "snakemake_interface_common" ];
 
-  enabledTestPaths = [ "tests/tests.py" ];
+  # test_snakemake_version: No module named 'snakemake'
+  # nativeCheckInputs = [ pytestCheckHook ];
 
-  meta = with lib; {
+  # enabledTestPaths = [ "tests/tests.py" ];
+
+  meta = {
     description = "Common functions and classes for Snakemake and its plugins";
     homepage = "https://github.com/snakemake/snakemake-interface-common";
     changelog = "https://github.com/snakemake/snakemake-interface-common/releases/tag/v${version}";
-    license = licenses.mit;
-    maintainers = with maintainers; [ veprbl ];
+    license = lib.licenses.mit;
+    maintainers = with lib.maintainers; [ veprbl ];
   };
 }

pkgs/development/python-modules/snakemake-interface-scheduler-plugins/default.nix

@@ -0,0 +1,42 @@
+{
+  lib,
+  buildPythonPackage,
+  fetchFromGitHub,
+  hatchling,
+  snakemake-interface-common,
+}:
+
+let
+  version = "2.0.1";
+
+  src = fetchFromGitHub {
+    owner = "snakemake";
+    repo = "snakemake-interface-scheduler-plugins";
+    tag = "v${version}";
+    hash = "sha256-Z/rJGkby9AcYB+Gil00xhbrySChqEIEOtzLyzQPhObk=";
+  };
+in
+buildPythonPackage {
+  pname = "snakemake-interface-scheduler-plugins";
+  inherit version src;
+  pyproject = true;
+
+  build-system = [ hatchling ];
+
+  dependencies = [ snakemake-interface-common ];
+
+  pythonImportsCheck = [ "snakemake_interface_scheduler_plugins" ];
+
+  # test_scheduler: No module named 'snakemake'
+  # nativeCheckInputs = [ pytestCheckHook ];
+
+  # enabledTestPaths = [ "tests/tests.py" ];
+
+  meta = {
+    description = "Provides a stable interface for interactions between Snakemake and its scheduler plugins";
+    homepage = "https://github.com/snakemake/snakemake-interface-scheduler-plugins";
+    changelog = "https://github.com/snakemake/snakemake-interface-scheduler-plugins/blob/${src.rev}/CHANGELOG.md";
+    license = lib.licenses.mit;
+    maintainers = with lib.maintainers; [ kyehn ];
+  };
+}

pkgs/top-level/python-packages.nix

@@ -17032,6 +17032,10 @@ self: super: with self; {
     callPackage ../development/python-modules/snakemake-interface-report-plugins
       { };
 
+  snakemake-interface-scheduler-plugins =
+    callPackage ../development/python-modules/snakemake-interface-scheduler-plugins
+      { };
+
   snakemake-interface-storage-plugins =
     callPackage ../development/python-modules/snakemake-interface-storage-plugins
       { };