123 lines
2.1 KiB
Nix
123 lines
2.1 KiB
Nix
{
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lib,
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buildPythonPackage,
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fetchFromGitHub,
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# build-system
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hatch-vcs,
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hatchling,
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# dependencies
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acres,
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attrs,
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importlib-resources,
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jinja2,
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looseversion,
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matplotlib,
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nibabel,
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nilearn,
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nipype,
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nitransforms,
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numpy,
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packaging,
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pandas,
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pybids,
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pyyaml,
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scikit-image,
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scipy,
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seaborn,
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svgutils,
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templateflow,
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traits,
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transforms3d,
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# tests
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pytest-cov-stub,
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pytest-env,
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pytestCheckHook,
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writableTmpDirAsHomeHook,
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}:
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buildPythonPackage rec {
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pname = "niworkflows";
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version = "1.14.3";
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pyproject = true;
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src = fetchFromGitHub {
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owner = "nipreps";
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repo = "niworkflows";
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tag = version;
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hash = "sha256-wdPHXVgMvd+Od3M2j7S43gBRSh4yiPeu+HM6EyiakwU=";
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};
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pythonRelaxDeps = [ "traits" ];
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build-system = [
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hatch-vcs
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hatchling
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];
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dependencies = [
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acres
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attrs
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importlib-resources
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jinja2
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looseversion
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matplotlib
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nibabel
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nilearn
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nipype
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nitransforms
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numpy
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packaging
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pandas
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pybids
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pyyaml
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scikit-image
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scipy
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seaborn
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svgutils
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templateflow
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traits
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transforms3d
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];
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env.SETUPTOOLS_SCM_PRETEND_VERSION = version;
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nativeCheckInputs = [
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pytest-cov-stub
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pytest-env
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pytestCheckHook
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writableTmpDirAsHomeHook
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];
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enabledTestPaths = [ "niworkflows" ];
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disabledTests = [
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# try to download data:
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"ROIsPlot"
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"ROIsPlot2"
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"niworkflows.interfaces.cifti._prepare_cifti"
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"niworkflows.utils.misc.get_template_specs"
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"test_GenerateCifti"
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"test_SimpleShowMaskRPT"
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"test_cifti_surfaces_plot"
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"test_brain_extraction_wf_smoketest"
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];
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disabledTestPaths = [
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"niworkflows/tests/test_registration.py"
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];
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pythonImportsCheck = [ "niworkflows" ];
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meta = {
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description = "Common workflows for MRI (anatomical, functional, diffusion, etc.)";
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mainProgram = "niworkflows-boldref";
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homepage = "https://github.com/nipreps/niworkflows";
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changelog = "https://github.com/nipreps/niworkflows/blob/${src.tag}/CHANGES.rst";
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license = lib.licenses.asl20;
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maintainers = with lib.maintainers; [ bcdarwin ];
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};
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}
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