5aba99242e
Made with
```shell
git restore .
fd '\.nix$' pkgs/ --type f -j1 -x bash -xc "$(cat <<"EOF"
typos --no-check-filenames --write-changes "$1"
git diff --exit-code "$1" && exit
#( git diff "$1" | grep -qE "^\+ +[^# ]") && git restore "$1"
count1="$( bat --language nix --diff --style changes "$1" --theme "Monokai Extended" --color always | aha --no-header | grep -E '^<span style="color:olive;">~</span> ' | wc -l )"
count2="$( bat --language nix --diff --style changes "$1" --theme "Monokai Extended" --color always | aha --no-header | grep -E '^<span style="color:olive;">~</span> (<span style="color:#f8f8f2;"> *</span>)?<span style="color:#75715e;">.*</span>$' | wc -l )"
[[ $count1 -ne $count2 ]] && git restore "$1"
EOF
)" -- {}
```
and filtered with `GIT_DIFF_OPTS='--unified=15' git -c interactive.singleKey=true add --patch`
I initially tried using the tree-sitter cli, python bindings and even ast-grep through various means, but this is what I ended up with.
57 lines
1.2 KiB
Nix
57 lines
1.2 KiB
Nix
{
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lib,
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buildPythonPackage,
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fetchFromGitHub,
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numpy,
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pytestCheckHook,
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pythonOlder,
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zlib,
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}:
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buildPythonPackage rec {
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pname = "pybigwig";
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version = "0.3.24";
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format = "setuptools";
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disabled = pythonOlder "3.9";
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src = fetchFromGitHub {
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owner = "deeptools";
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repo = "pyBigWig";
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tag = version;
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hash = "sha256-gK3cOwbvQtf+g1H/4x69swqCFdkBwpV7ZOrbE0eANh0=";
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};
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buildInputs = [ zlib ];
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nativeCheckInputs = [
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numpy
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pytestCheckHook
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];
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pythonImportsCheck = [ "pyBigWig" ];
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pytestFlagsArray = [ "pyBigWigTest/test*.py" ];
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disabledTests = [
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# Test file is downloaded from GitHub
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"testAll"
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"testBigBed"
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"testFoo"
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"testNumpyValues"
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];
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meta = with lib; {
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description = "File access to bigBed files, and read and write access to bigWig files";
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longDescription = ''
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A Python extension, written in C, for quick access to bigBed files
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and access to and creation of bigWig files. This extension uses
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libBigWig for local and remote file access.
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'';
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homepage = "https://github.com/deeptools/pyBigWig";
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changelog = "https://github.com/deeptools/pyBigWig/releases/tag/${src.tag}";
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license = licenses.mit;
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maintainers = with maintainers; [ scalavision ];
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};
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}
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