Files
nixpkgs/pkgs/development/r-modules/bioc-packages.json
T
2025-11-01 10:02:50 +11:00

17693 lines
818 KiB
JSON

{
"extraArgs": {
"biocVersion": "3.22"
},
"packages": {
"ABSSeq": {
"name": "ABSSeq",
"version": "1.64.0",
"sha256": "0cvq7n71i784agdyl2l4fxmla5sd04nqb6z35pc8k0lqh6319bh4",
"depends": ["limma", "locfit"]
},
"ABarray": {
"name": "ABarray",
"version": "1.78.0",
"sha256": "0y8hf8ziyh4v5q47ysbrld402z4vwd5dgkh21fvrq13r99vx4fpx",
"depends": ["Biobase", "multtest"]
},
"ACE": {
"name": "ACE",
"version": "1.28.0",
"sha256": "09bcqwkxswn8zxnp66xbqv8p71z8fdnipr1v1cfn4m64q9jjjir5",
"depends": ["Biobase", "GenomicRanges", "QDNAseq", "ggplot2"]
},
"ACME": {
"name": "ACME",
"version": "2.66.0",
"sha256": "0fklsn5clzni4fsnipgkkikbr09fiwlkrsf3gqnyzl1kwwlwxiy2",
"depends": ["Biobase", "BiocGenerics"]
},
"ADAM": {
"name": "ADAM",
"version": "1.26.0",
"sha256": "12s2dlfnkg13jgh8dppcjk5sfhw88c63iqzmf9c4sb5q9i2ydy8x",
"depends": ["DT", "GO_db", "KEGGREST", "Rcpp", "SummarizedExperiment", "dplyr", "knitr", "pbapply", "stringr"]
},
"ADAMgui": {
"name": "ADAMgui",
"version": "1.26.0",
"sha256": "1gn460fdbcdngzjq4llyq08fzgaqds6msvya8967cz5c6cg70f7j",
"depends": ["ADAM", "DT", "GO_db", "RColorBrewer", "colorRamps", "data_table", "dplyr", "ggplot2", "ggpubr", "ggrepel", "ggsignif", "gridExtra", "knitr", "reshape2", "shiny", "shinyjs", "stringi", "stringr", "testthat", "varhandle"]
},
"ADAPT": {
"name": "ADAPT",
"version": "1.4.0",
"sha256": "1v0lypbv1bhxphd071rn3b8kyvfn088nx78fg3kadlgc0y5xvli5",
"depends": ["Rcpp", "RcppArmadillo", "RcppParallel", "ggplot2", "ggrepel", "phyloseq"]
},
"ADImpute": {
"name": "ADImpute",
"version": "1.20.0",
"sha256": "1dnw40hnrjyd3bbb1ylw0fy8lcc6irswd80px69p8c7kmwp2yfp1",
"depends": ["BiocParallel", "DrImpute", "MASS", "Matrix", "S4Vectors", "SAVER", "SingleCellExperiment", "SummarizedExperiment", "checkmate", "data_table", "kernlab", "rsvd"]
},
"ADaCGH2": {
"name": "ADaCGH2",
"version": "2.50.0",
"sha256": "12p0fffq1aa8mnibjwg10b7f4bhr9brg6jniz9amzr5hink5xvy6",
"depends": ["DNAcopy", "aCGH", "bit", "cluster", "ff", "tilingArray", "waveslim"]
},
"AGDEX": {
"name": "AGDEX",
"version": "1.58.0",
"sha256": "0xwlm7nay7ns5nnvi6zrl2ygrbkj6lq14yph6rasy08cdjll74l2",
"depends": ["Biobase", "GSEABase"]
},
"AHMassBank": {
"name": "AHMassBank",
"version": "1.10.0",
"sha256": "1kx70njam0b05ind94r55dm99a5b2x01akipvz7q9bhqrcl0qbq7",
"depends": ["AnnotationHubData"]
},
"AIMS": {
"name": "AIMS",
"version": "1.42.0",
"sha256": "0y0shffhx5axm14m0wwns7x2aydzwhwd1x28an2c3y34x03bp98x",
"depends": ["Biobase", "e1071"]
},
"ALDEx2": {
"name": "ALDEx2",
"version": "1.42.0",
"sha256": "0ajpmb60yyc6z6w8vjy6anxla4cih6229a5d8q0g279s2pg6s8lr",
"depends": ["BiocParallel", "GenomicRanges", "IRanges", "Rfast", "S4Vectors", "SummarizedExperiment", "directlabels", "lattice", "latticeExtra", "multtest", "zCompositions"]
},
"AMARETTO": {
"name": "AMARETTO",
"version": "1.26.0",
"sha256": "1ynzmipszc22d1zcw4w4lslcvdappw12c1csckqz94bibfgngjmq",
"depends": ["BiocFileCache", "ComplexHeatmap", "DT", "Matrix", "MultiAssayExperiment", "Rcpp", "callr", "circlize", "curatedTCGAData", "doParallel", "dplyr", "foreach", "ggplot2", "glmnet", "gridExtra", "httr", "impute", "knitr", "limma", "matrixStats", "readr", "reshape2", "rmarkdown", "tibble"]
},
"AMOUNTAIN": {
"name": "AMOUNTAIN",
"version": "1.36.0",
"sha256": "14xmkjysv3ydhqvzc43ld5kl8rl2j08dyykmh4jvi78lm4lwgifs",
"depends": []
},
"ANCOMBC": {
"name": "ANCOMBC",
"version": "2.12.0",
"sha256": "1pba6ls61184dx8dyf2lfxcabpnj3av5s60w86104addygnj9y78",
"depends": ["CVXR", "DescTools", "Hmisc", "MASS", "Matrix", "Rdpack", "doParallel", "doRNG", "energy", "foreach", "gtools", "lme4", "lmerTest", "multcomp", "nloptr"]
},
"ANF": {
"name": "ANF",
"version": "1.32.0",
"sha256": "1l69zjldgvih834k09hfx1lrhj634harva38h983y4cwl58hv4xj",
"depends": ["Biobase", "MASS", "RColorBrewer", "igraph", "survival"]
},
"APL": {
"name": "APL",
"version": "1.14.0",
"sha256": "0xdj7hwaw3mxqwyv8hd8j37ri4f49ldmv3n4d23n0wm62rrf8igs",
"depends": ["Matrix", "RSpectra", "SeuratObject", "SingleCellExperiment", "SummarizedExperiment", "ggplot2", "ggrepel", "magrittr", "org_Hs_eg_db", "org_Mm_eg_db", "plotly", "rlang", "topGO", "viridisLite"]
},
"ARRmNormalization": {
"name": "ARRmNormalization",
"version": "1.50.0",
"sha256": "0gv4gzva7m77d97aczr44g9xirscwqnib7v9wsld9dd0dsall8mj",
"depends": ["ARRmData"]
},
"ASAFE": {
"name": "ASAFE",
"version": "1.36.0",
"sha256": "01rdnc6v41ql4bfx4xv23sz67lqm6pgphfd1dskl0rvqnlf8z89p",
"depends": []
},
"ASEB": {
"name": "ASEB",
"version": "1.54.0",
"sha256": "03w1pxqyfj92x0bfnxpi9jvshz6vhkp9fgjb0gl8ry1cs7n0n11d",
"depends": []
},
"ASGSCA": {
"name": "ASGSCA",
"version": "1.44.0",
"sha256": "1c1172y40jd1apx3vv2mjnhiw87rgv1fhlmnqz7wqkvjil71ial2",
"depends": ["MASS", "Matrix"]
},
"ASICS": {
"name": "ASICS",
"version": "2.26.0",
"sha256": "01xhk2i13hcbmjy92bxpprn19q64xsqk31f9f7q91rdk4iii0ckd",
"depends": ["BiocParallel", "Matrix", "PepsNMR", "SummarizedExperiment", "ggplot2", "glmnet", "gridExtra", "mvtnorm", "plyr", "quadprog", "ropls", "zoo"]
},
"ASSET": {
"name": "ASSET",
"version": "2.28.0",
"sha256": "0mg1mmj2wlrwl668vkkxycr5ymzhcai78vvq49hnrrkhnb79wx7h",
"depends": ["MASS", "msm", "rmeta"]
},
"ASSIGN": {
"name": "ASSIGN",
"version": "1.46.0",
"sha256": "1k38y9nwayrbd0icfqqw2qcpk76g7ycybfnjqfyic6vcgn7yhfr9",
"depends": ["Rlab", "ggplot2", "gplots", "msm", "sva", "yaml"]
},
"ASURAT": {
"name": "ASURAT",
"version": "1.14.0",
"sha256": "18bb6hx01v1jz4jy0lzr0g0xa269j9jvz8li3wfbfdrnnp0l3cj6",
"depends": ["ComplexHeatmap", "Rcpp", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "circlize", "cluster", "plot3D"]
},
"ASpli": {
"name": "ASpli",
"version": "2.20.0",
"sha256": "16m8v29f22bwlbz1v5fxhg8rmp2wxaxr9ywl35hpi9jzgbmgpcz5",
"depends": ["AnnotationDbi", "BiocGenerics", "BiocStyle", "DT", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "Gviz", "IRanges", "MASS", "Rsamtools", "S4Vectors", "UpSetR", "data_table", "edgeR", "htmltools", "igraph", "limma", "pbmcapply", "tidyr", "txdbmaker"]
},
"ATACseqQC": {
"name": "ATACseqQC",
"version": "1.34.0",
"sha256": "0yb69k9cl1ibf8v0jmmzij7l6iz85gf4dyz7yli1b72yf765q5y0",
"depends": ["BSgenome", "BiocGenerics", "BiocParallel", "Biostrings", "ChIPpeakAnno", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "GenomicScores", "IRanges", "KernSmooth", "Rsamtools", "S4Vectors", "edgeR", "limma", "motifStack", "preseqR", "randomForest", "rtracklayer"]
},
"ATACseqTFEA": {
"name": "ATACseqTFEA",
"version": "1.12.0",
"sha256": "1zlwbx1pvq5wfxvm94mgdwvy8k53n74bjgzbpp6p34zy5v1cga5r",
"depends": ["BiocGenerics", "GenomicAlignments", "GenomicRanges", "IRanges", "Matrix", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "TFBSTools", "dplyr", "ggplot2", "ggrepel", "limma", "motifmatchr", "pracma", "rtracklayer"]
},
"AUCell": {
"name": "AUCell",
"version": "1.32.0",
"sha256": "1qpdvia2qlq0w477xdia05alfmmnwf0ix2f7ib9hn593fzrp1py7",
"depends": ["BiocGenerics", "DelayedArray", "DelayedMatrixStats", "GSEABase", "Matrix", "R_utils", "SummarizedExperiment", "data_table", "mixtools"]
},
"AWAggregator": {
"name": "AWAggregator",
"version": "1.0.0",
"sha256": "06czqk7n4gcxw27qzsia6vnibm2mbd1g1315kxgxnivxh9sjsn0k",
"depends": ["Peptides", "dplyr", "progress", "purrr", "ranger", "rlang", "stringr", "tidyr", "toOrdinal"]
},
"AWFisher": {
"name": "AWFisher",
"version": "1.24.0",
"sha256": "1gllng75bk3iiwrv3r4fphhnx90xk88jll00zja2akxxn0nka2g5",
"depends": ["edgeR", "limma"]
},
"AffiXcan": {
"name": "AffiXcan",
"version": "1.28.0",
"sha256": "1smbwpp1iqlch3135rkah68bnfh54849yhy8mwj0845i9y9rdqk9",
"depends": ["BiocParallel", "MultiAssayExperiment", "SummarizedExperiment", "crayon"]
},
"AffyRNADegradation": {
"name": "AffyRNADegradation",
"version": "1.56.0",
"sha256": "11isb0is2l9yccgr61asbf5kyckv2hp64axwv7ncvzrq6gn6zqy6",
"depends": ["affy"]
},
"AgiMicroRna": {
"name": "AgiMicroRna",
"version": "2.60.0",
"sha256": "0an7hfccdcxcsshafihhib77x96f5a0lny28zdnsi31dx41mmpvh",
"depends": ["Biobase", "affy", "affycoretools", "limma", "preprocessCore"]
},
"AllelicImbalance": {
"name": "AllelicImbalance",
"version": "1.48.0",
"sha256": "0g4gv0h69cld903nb0sr58vc7vsbkr62p19m7fjfhv0crmkr960s",
"depends": ["AnnotationDbi", "BSgenome", "BiocGenerics", "Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "Gviz", "IRanges", "Rsamtools", "S4Vectors", "SummarizedExperiment", "VariantAnnotation", "gridExtra", "lattice", "latticeExtra", "nlme", "seqinr"]
},
"AlphaBeta": {
"name": "AlphaBeta",
"version": "1.24.0",
"sha256": "0s550vmcsnm2ih1vajyah8kqvk7y4bgyrwm1fddzvqsizn3w61x1",
"depends": ["BiocParallel", "data_table", "dplyr", "expm", "ggplot2", "gtools", "igraph", "optimx", "plotly", "stringr"]
},
"AlphaMissenseR": {
"name": "AlphaMissenseR",
"version": "1.6.0",
"sha256": "1d36bav4fn5dmay9c9czb19b15yx0lvh13l2h6irw15i0q38480a",
"depends": ["BiocBaseUtils", "BiocFileCache", "DBI", "curl", "dplyr", "duckdb", "ggplot2", "memoise", "rjsoncons", "rlang", "spdl", "whisker"]
},
"AlpsNMR": {
"name": "AlpsNMR",
"version": "4.12.0",
"sha256": "0bfx721f9bx22xls65d1ygdkwbh1xadnff6nw29gyk7yic62nwik",
"depends": ["BiocParallel", "baseline", "cli", "dplyr", "fs", "generics", "ggplot2", "glue", "htmltools", "magrittr", "matrixStats", "mixOmics", "pcaPP", "purrr", "readxl", "reshape2", "rlang", "rmarkdown", "scales", "signal", "speaq", "stringr", "tibble", "tidyr", "tidyselect", "vctrs"]
},
"AnVIL": {
"name": "AnVIL",
"version": "1.22.0",
"sha256": "08r41q8zb72kbfslw851152h4k2q7jzkk0d85d6rmvdd3r1qd9bw",
"depends": ["AnVILBase", "BiocBaseUtils", "DT", "GCPtools", "dplyr", "futile_logger", "htmltools", "httr", "jsonlite", "miniUI", "rapiclient", "shiny", "tibble", "yaml"]
},
"AnVILAz": {
"name": "AnVILAz",
"version": "1.4.0",
"sha256": "0hzmqbqrak5b0y3872mcddd3568dmxi9456qv8svsjqp2bg4941v",
"depends": ["AnVILBase", "BiocBaseUtils", "curl", "httr2", "jsonlite", "rjsoncons", "tibble"]
},
"AnVILBase": {
"name": "AnVILBase",
"version": "1.4.0",
"sha256": "12bv85l363a6zy3jmsp2rqcyhha5slqmalyyc9dzxyk6s47qg9rh",
"depends": ["dplyr", "httr", "httr2", "jsonlite", "tibble"]
},
"AnVILBilling": {
"name": "AnVILBilling",
"version": "1.20.0",
"sha256": "0w8j6wgpi614mqs850x20c1pwi4za11gyyjnlsms22b5dv0vnsqp",
"depends": ["DBI", "DT", "bigrquery", "dplyr", "ggplot2", "lubridate", "magrittr", "plotly", "shiny", "shinytoastr"]
},
"AnVILGCP": {
"name": "AnVILGCP",
"version": "1.4.0",
"sha256": "151gklrnpwdj3mdlxn71q4nh01xxl76xqljmk551dqyzpi9qic8i",
"depends": ["AnVILBase", "BiocBaseUtils", "GCPtools", "dplyr", "httr", "jsonlite", "rlang", "tibble", "tidyr"]
},
"AnVILPublish": {
"name": "AnVILPublish",
"version": "1.20.0",
"sha256": "1x60vfhs9w60kc3ibgc7f6hzzfzzgq40g186zvwwa7fbkm44yhiw",
"depends": ["AnVIL", "AnVILGCP", "BiocBaseUtils", "BiocManager", "httr", "jsonlite", "readr", "rmarkdown", "whisker", "yaml"]
},
"AnVILWorkflow": {
"name": "AnVILWorkflow",
"version": "1.10.0",
"sha256": "1i7pia3hgr4is23vyligxbkr3a8qr935w4nx2z5ig645k4wk9q0g",
"depends": ["AnVIL", "AnVILBase", "AnVILGCP", "dplyr", "httr", "jsonlite", "plyr", "rlang", "stringr", "tibble", "tidyr"]
},
"Anaquin": {
"name": "Anaquin",
"version": "2.34.0",
"sha256": "159hipdjikaflrpz79xsvx8ks97c7r8ibnzhj90vya3jf2vfvaq3",
"depends": ["DESeq2", "ROCR", "ggplot2", "knitr", "locfit", "plyr", "qvalue"]
},
"AnnotationDbi": {
"name": "AnnotationDbi",
"version": "1.72.0",
"sha256": "0vzrkx8x060281zmk13k8ajrfl8g6sx361563yw4aymvjdrdax37",
"depends": ["Biobase", "BiocGenerics", "DBI", "IRanges", "KEGGREST", "RSQLite", "S4Vectors"]
},
"AnnotationFilter": {
"name": "AnnotationFilter",
"version": "1.34.0",
"sha256": "1p8m3kx6il3g1pfc3d7kxqvpdr1dpalscp7pav03a1v3x7199gn5",
"depends": ["GenomicRanges", "lazyeval"]
},
"AnnotationForge": {
"name": "AnnotationForge",
"version": "1.52.0",
"sha256": "0idd80w57yd4gxv5k15mzwmny18bsv2aphx7zkk250nbhj9qb7l7",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "DBI", "RCurl", "RSQLite", "S4Vectors", "XML"]
},
"AnnotationHub": {
"name": "AnnotationHub",
"version": "4.0.0",
"sha256": "1im0k4ajrpvmvlyi0v76x93mzwq77nq9mx1rwq3x7xfr5hz6r21f",
"depends": ["AnnotationDbi", "BiocBaseUtils", "BiocFileCache", "BiocGenerics", "BiocManager", "BiocVersion", "RSQLite", "S4Vectors", "curl", "dplyr", "httr2", "rappdirs", "yaml"]
},
"AnnotationHubData": {
"name": "AnnotationHubData",
"version": "1.40.0",
"sha256": "1ix1mnl0ai16160rfghcn6apckdicm2hnafch8b0yf50iz5sg5fk",
"depends": ["AnnotationDbi", "AnnotationForge", "AnnotationHub", "Biobase", "BiocCheck", "BiocGenerics", "BiocManager", "Biostrings", "DBI", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "OrganismDbi", "RCurl", "RSQLite", "Rsamtools", "S4Vectors", "Seqinfo", "XML", "biocViews", "futile_logger", "graph", "jsonlite", "rtracklayer"]
},
"ArrayExpress": {
"name": "ArrayExpress",
"version": "1.70.0",
"sha256": "1f7ai8ljy6ssbk21fl2f565v988ry12k5x7ima73z0a378zq8dyb",
"depends": ["Biobase", "httr", "jsonlite", "limma", "oligo", "rlang"]
},
"AssessORF": {
"name": "AssessORF",
"version": "1.28.0",
"sha256": "16020ypgrahjcmfw46lniqabb6c0bghsw6vznxxm98bakcqv0qlz",
"depends": ["Biostrings", "DECIPHER", "GenomicRanges", "IRanges"]
},
"BADER": {
"name": "BADER",
"version": "1.48.0",
"sha256": "1kxdwxr5hfdgky2083jp1cy79qilv1lb3l1ccpx0y0khf8104nld",
"depends": []
},
"BAGS": {
"name": "BAGS",
"version": "2.50.0",
"sha256": "0813s292xszlw4r8xy0hnm0jkawz6l7cafv2xsa7k005lzm6dhbx",
"depends": ["Biobase", "breastCancerVDX"]
},
"BANDITS": {
"name": "BANDITS",
"version": "1.26.0",
"sha256": "0ygh1sgnxsqvz9k79sp29nc1rvm4cfp7g1fxy0hiis9p6lznz88m",
"depends": ["BiocParallel", "DRIMSeq", "MASS", "R_utils", "Rcpp", "RcppArmadillo", "data_table", "doParallel", "doRNG", "foreach", "ggplot2"]
},
"BASiCS": {
"name": "BASiCS",
"version": "2.22.0",
"sha256": "04z4dphnxvphhngxqd7zcv5072s424m08vdsk7aqiyv7zd63jacz",
"depends": ["Biobase", "BiocGenerics", "BiocParallel", "MASS", "Matrix", "Rcpp", "RcppArmadillo", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "assertthat", "coda", "cowplot", "ggExtra", "ggplot2", "hexbin", "matrixStats", "posterior", "reshape2", "scran", "scuttle", "viridis"]
},
"BASiCStan": {
"name": "BASiCStan",
"version": "1.12.0",
"sha256": "05iinqlg0jfsc1fs2sdbxkyizh04myspp9fax4jimpwys0svp8im",
"depends": ["BASiCS", "BH", "Rcpp", "RcppEigen", "RcppParallel", "SingleCellExperiment", "StanHeaders", "SummarizedExperiment", "glmGamPoi", "rstan", "rstantools", "scran", "scuttle"]
},
"BBCAnalyzer": {
"name": "BBCAnalyzer",
"version": "1.40.0",
"sha256": "0dsfj212y0gh2njch10hrzhdl63h12qkhky2n3slq3kp0qzvi5gk",
"depends": ["Biostrings", "GenomicRanges", "IRanges", "Rsamtools", "SummarizedExperiment", "VariantAnnotation"]
},
"BCRANK": {
"name": "BCRANK",
"version": "1.72.0",
"sha256": "0snryc43qkhcgaaymdxrfviyg700zvq32s7y3pl649l4qnvr0y4p",
"depends": ["Biostrings"]
},
"BEAT": {
"name": "BEAT",
"version": "1.48.0",
"sha256": "0d7jmn0w9yj09b14ylfsfqqivqkx55agmc1wk20cnrcisypfmi24",
"depends": ["BSgenome", "Biostrings", "GenomicRanges", "ShortRead"]
},
"BERT": {
"name": "BERT",
"version": "1.6.0",
"sha256": "0dif7q6cg6pz56yvwwg1zghv7n9b8gk0wc4j8lxpx1pn16pslqpl",
"depends": ["BiocParallel", "SummarizedExperiment", "cluster", "comprehenr", "foreach", "invgamma", "iterators", "janitor", "limma", "logging", "sva"]
},
"BEclear": {
"name": "BEclear",
"version": "2.26.0",
"sha256": "08q3hzyrbx3b34dgjh21q0wvz7489y7y0d3z3syg76hpgsmbqa61",
"depends": ["BiocParallel", "Matrix", "Rcpp", "Rdpack", "abind", "data_table", "dixonTest", "futile_logger", "ids"]
},
"BG2": {
"name": "BG2",
"version": "1.10.0",
"sha256": "1h4i0bavsqlhgqjz1j6ihaz3247gg7d2n9gv6ssmqsrmgfr1kfcd",
"depends": ["GA", "MASS", "Matrix", "caret", "memoise"]
},
"BLMA": {
"name": "BLMA",
"version": "1.34.0",
"sha256": "1r5bxljaqvx145k78n3q1mrjksfjbyng63wsn9y8xwcjiwfzj84j",
"depends": ["Biobase", "GSA", "PADOG", "ROntoTools", "graph", "limma", "metafor"]
},
"BOBaFIT": {
"name": "BOBaFIT",
"version": "1.14.0",
"sha256": "0whrk2s02kisrq2f884vw72g5m7z27xb12498l7rr30hynxy0vsw",
"depends": ["GenomicRanges", "NbClust", "dplyr", "ggbio", "ggforce", "ggplot2", "magrittr", "plyranges", "stringr", "tidyr"]
},
"BRAIN": {
"name": "BRAIN",
"version": "1.56.0",
"sha256": "1dimjgbl3rzqgbqq1c2s7ksv3f6hi8ghpgrhv6brnp7b04mjzbxc",
"depends": ["Biostrings", "PolynomF", "lattice"]
},
"BREW3R_r": {
"name": "BREW3R.r",
"version": "1.6.0",
"sha256": "143c7kpn6k2ayj8h0n1jwd7kw4ss44x73sk7ja5k03j2n257yya4",
"depends": ["GenomicRanges", "S4Vectors", "rlang"]
},
"BSgenome": {
"name": "BSgenome",
"version": "1.78.0",
"sha256": "05j4nd6n7g0a5jprn2sq2ki0fwzca4hj850gazr3xh6a461ggjgi",
"depends": ["BiocGenerics", "BiocIO", "Biostrings", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "XVector", "matrixStats", "rtracklayer"]
},
"BSgenomeForge": {
"name": "BSgenomeForge",
"version": "1.10.0",
"sha256": "0g3wh1i29j5kkf9v1apgix8268ylmn8yhksibwkkpnhvwz9c2dj7",
"depends": ["BSgenome", "Biobase", "BiocGenerics", "BiocIO", "Biostrings", "GenomeInfoDb", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "rtracklayer"]
},
"BUMHMM": {
"name": "BUMHMM",
"version": "1.34.0",
"sha256": "018p00njamj3dicbky2mpq944wlnc1p6mjmprndl3118zcxpv2i1",
"depends": ["Biostrings", "IRanges", "SummarizedExperiment", "devtools", "gtools", "stringi"]
},
"BUS": {
"name": "BUS",
"version": "1.66.0",
"sha256": "0nmqym06q9v6cvfw5yi0fv623q1j8xsfkwsk0pbx1dazcav9b2mp",
"depends": ["infotheo", "minet"]
},
"BUScorrect": {
"name": "BUScorrect",
"version": "1.28.0",
"sha256": "1j46hlzay56mpj1pr4vcgq89j7q0pyx20kj6ymhpxqmhf2ax9077",
"depends": ["SummarizedExperiment", "gplots"]
},
"BUSpaRse": {
"name": "BUSpaRse",
"version": "1.24.0",
"sha256": "0907sj9icf5ywn6rbcrk37wpp8njiyyxq5fkq76wzzj5v6m96n75",
"depends": ["AnnotationDbi", "AnnotationFilter", "AnnotationHub", "BH", "BSgenome", "BiocGenerics", "Biostrings", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "Matrix", "Rcpp", "RcppArmadillo", "RcppProgress", "S4Vectors", "biomaRt", "dplyr", "ensembldb", "ggplot2", "lifecycle", "magrittr", "plyranges", "stringr", "tibble", "tidyr", "zeallot"]
},
"BUSseq": {
"name": "BUSseq",
"version": "1.16.0",
"sha256": "0iw84pf59zf39ldbibl4qxyjvn9id86xrnvalryvs1mpjdazyjb2",
"depends": ["S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "gplots"]
},
"BaalChIP": {
"name": "BaalChIP",
"version": "1.36.0",
"sha256": "0zi2b93jrcv5y7462f2bcdp768pik78n5nxwwrd3y5w46j8k7l7k",
"depends": ["GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "coda", "doBy", "doParallel", "foreach", "ggplot2", "reshape2", "scales"]
},
"BadRegionFinder": {
"name": "BadRegionFinder",
"version": "1.38.0",
"sha256": "0413bc39r666dwgyhskdllvyqfvxvh2hna535mnjm1326wprhvcz",
"depends": ["GenomicRanges", "Rsamtools", "S4Vectors", "VariantAnnotation", "biomaRt"]
},
"Banksy": {
"name": "Banksy",
"version": "1.6.0",
"sha256": "02bhdxckryvnilq7hsbngy6g251cnjg4j9d7wg4m3gkrcsrbjwim",
"depends": ["BiocParallel", "GenomeInfoDb", "Matrix", "MatrixGenerics", "RcppHungarian", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "aricode", "data_table", "dbscan", "igraph", "irlba", "leidenAlg", "mclust", "uwot"]
},
"BaseSpaceR": {
"name": "BaseSpaceR",
"version": "1.54.0",
"sha256": "0dyv8abr34jhig7xb7z7gghb0nnqaflwqshqbls08layz5wh4p21",
"depends": ["RCurl", "RJSONIO"]
},
"Basic4Cseq": {
"name": "Basic4Cseq",
"version": "1.46.0",
"sha256": "1jjmsn2dryvkyisbw4jwq8df162wkmcr7kiqn8jwz9g4gzi8lb6b",
"depends": ["BSgenome_Ecoli_NCBI_20080805", "Biostrings", "GenomicAlignments", "GenomicRanges", "RCircos", "caTools"]
},
"BasicSTARRseq": {
"name": "BasicSTARRseq",
"version": "1.38.0",
"sha256": "06yxawx34bfr1112kkrd1g7n27qfxrnxq699ap18469vxypz2dw8",
"depends": ["GenomicAlignments", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo"]
},
"BatchQC": {
"name": "BatchQC",
"version": "2.6.0",
"sha256": "12igzinwk2lkxkrsbxpm59jqizw0walvr7xrhhl18hjjfalff7ji",
"depends": ["DESeq2", "EBSeq", "FNN", "MASS", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "data_table", "dplyr", "edgeR", "ggdendro", "ggnewscale", "ggplot2", "limma", "matrixStats", "pheatmap", "reader", "reshape2", "scran", "shiny", "shinyjs", "shinythemes", "sva", "tibble", "tidyr", "tidyverse", "umap"]
},
"BatchSVG": {
"name": "BatchSVG",
"version": "1.2.0",
"sha256": "005dk3aijcm881fdy35mqhrchh34i057c3x9n168g4lp3h4k036r",
"depends": ["RColorBrewer", "SummarizedExperiment", "cowplot", "dplyr", "ggplot2", "ggrepel", "rlang", "scales", "scry"]
},
"BayesKnockdown": {
"name": "BayesKnockdown",
"version": "1.36.0",
"sha256": "1a69cywgxsfylm4nvidllqnh9pgkps7lw15c62zpbh9jk041fxad",
"depends": ["Biobase"]
},
"BayesSpace": {
"name": "BayesSpace",
"version": "1.20.0",
"sha256": "1mqa0f08ynpplvg7ni8alk0a9w4yy876jslzx3p1kmyb8ncb4zaj",
"depends": ["BiocFileCache", "BiocParallel", "BiocSingular", "DirichletReg", "Matrix", "RCurl", "Rcpp", "RcppArmadillo", "RcppDist", "RcppProgress", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "arrow", "assertthat", "coda", "dplyr", "ggplot2", "magrittr", "mclust", "microbenchmark", "purrr", "rhdf5", "rjson", "rlang", "scales", "scater", "scran", "tibble", "tidyr", "xgboost"]
},
"BeadDataPackR": {
"name": "BeadDataPackR",
"version": "1.62.0",
"sha256": "0dl1clwaccv0s7g5ka27wrb74yw8pm1sy12ax4fkpmdbyka7ca19",
"depends": []
},
"BgeeCall": {
"name": "BgeeCall",
"version": "1.26.0",
"sha256": "1ql6id4l1qchavywbarj0c5vc8j7ars34br9wb4s66is68bb688p",
"depends": ["AnnotationDbi", "Biostrings", "GenomicFeatures", "IRanges", "RCurl", "RSQLite", "curl", "data_table", "dplyr", "ggplot2", "jsonlite", "readr", "rhdf5", "rslurm", "rtracklayer", "scales", "sjmisc", "spatstat_univar", "stringr", "txdbmaker", "tximport"]
},
"BgeeDB": {
"name": "BgeeDB",
"version": "2.36.0",
"sha256": "0a0ldkaibca8iipnyhy8h55za3acii4vchssk497bl0788gybbsc",
"depends": ["Biobase", "HDF5Array", "RCurl", "RSQLite", "R_utils", "anndata", "bread", "curl", "data_table", "digest", "dplyr", "graph", "tidyr", "topGO", "zellkonverter"]
},
"BiFET": {
"name": "BiFET",
"version": "1.30.0",
"sha256": "08w0jfilp954k82px74ppmr7h2k1mzac1788bbp5qdq50vym4iks",
"depends": ["GenomicRanges", "poibin"]
},
"BiRewire": {
"name": "BiRewire",
"version": "3.41.0",
"sha256": "18ckdn0ls29z7i51k6ilnd4d65ci33zcy9lidmr34djyjh732b4v",
"depends": ["Matrix", "Rtsne", "igraph", "slam"]
},
"BiSeq": {
"name": "BiSeq",
"version": "1.50.0",
"sha256": "0j2v6ppb28rf2l3i8jm2afqxban8fpwh83rr5mrvxc5l90i7j1bd",
"depends": ["Biobase", "BiocGenerics", "Formula", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "SummarizedExperiment", "betareg", "globaltest", "lokern", "rtracklayer"]
},
"BicARE": {
"name": "BicARE",
"version": "1.68.0",
"sha256": "1jw4ldm5mhzzcxymdhyqydryxxj5chcs85x3wy5f658vnwb8v1zc",
"depends": ["Biobase", "GO_db", "GSEABase", "multtest"]
},
"BindingSiteFinder": {
"name": "BindingSiteFinder",
"version": "2.8.0",
"sha256": "17fl66fqbyibhgyjisfvjjmprpk1l6vw5mbb67j29skgnyv0882n",
"depends": ["ComplexHeatmap", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "RColorBrewer", "S4Vectors", "dplyr", "forcats", "ggdist", "ggforce", "ggplot2", "kableExtra", "lifecycle", "matrixStats", "plyr", "rlang", "rtracklayer", "tibble", "tidyr"]
},
"BioCartaImage": {
"name": "BioCartaImage",
"version": "1.8.0",
"sha256": "1p65sdfhsq2iwg87mmxb95r7z92jyrw6b7qxxy3rjb9iwzxqyzc1",
"depends": ["magick"]
},
"BioCor": {
"name": "BioCor",
"version": "1.34.0",
"sha256": "04bfi8mmff5ykxim1rzpfgglbcdy6aj1ha9l86cb6pp40ssp8rn5",
"depends": ["BiocParallel", "GSEABase", "Matrix"]
},
"BioGA": {
"name": "BioGA",
"version": "1.4.0",
"sha256": "0pyylg02l6fsdnmyhmqajy4jlqa2m1xwdkdrdyzqk3cyqp2mrf20",
"depends": ["BiocStyle", "Rcpp", "SummarizedExperiment", "animation", "biocViews", "ggplot2", "rlang", "sessioninfo"]
},
"BioMVCClass": {
"name": "BioMVCClass",
"version": "1.78.0",
"sha256": "0iiz1akgb43kwsk1s318m7scwirksvjbd9kkjv246rpnagwi3im4",
"depends": ["Biobase", "MVCClass", "Rgraphviz", "graph"]
},
"BioNAR": {
"name": "BioNAR",
"version": "1.11.0",
"sha256": "0sfrkliw433lr5bb7hi39nbajvn003dcfr6wj1rg8vfbny9hb1bn",
"depends": ["AnnotationDbi", "GO_db", "Matrix", "RSpectra", "Rdpack", "WGCNA", "cowplot", "data_table", "dplyr", "fgsea", "ggplot2", "ggrepel", "igraph", "latex2exp", "minpack_lm", "org_Hs_eg_db", "poweRlaw", "rSpectral", "scales", "stringr", "viridis"]
},
"BioNERO": {
"name": "BioNERO",
"version": "1.18.0",
"sha256": "1sx68jlh98as80hkwdl6bd0xzdf3qc0cydg3xl8x4zv4wbs03mzy",
"depends": ["BiocParallel", "ComplexHeatmap", "GENIE3", "NetRep", "RColorBrewer", "SummarizedExperiment", "WGCNA", "dynamicTreeCut", "ggdendro", "ggnetwork", "ggplot2", "ggrepel", "igraph", "intergraph", "matrixStats", "minet", "patchwork", "reshape2", "rlang", "sva"]
},
"BioNet": {
"name": "BioNet",
"version": "1.70.0",
"sha256": "1kdx2ib8bki02qszvysqvpq0pj70z1dkinqpzhqvys73kdwpqz3g",
"depends": ["AnnotationDbi", "Biobase", "RBGL", "graph", "igraph"]
},
"BioQC": {
"name": "BioQC",
"version": "1.38.0",
"sha256": "16v51mhmf1pns9ym4crqd0k5swnkmj5gir3rb17j6mcv9s904x7d",
"depends": ["Biobase", "Rcpp", "edgeR"]
},
"BioTIP": {
"name": "BioTIP",
"version": "1.24.0",
"sha256": "0chi6b3ygglll9pfl0i2jhq5sadzhzll2fvxc7gifvfjk4pzqk3a",
"depends": ["GenomicRanges", "MASS", "cluster", "doParallel", "foreach", "igraph", "psych", "scran", "stringr"]
},
"Biobase": {
"name": "Biobase",
"version": "2.70.0",
"sha256": "1g1wh5brsspnjxxnxa0jjp3nl15m7254rk3bn56w71hfchsp82jk",
"depends": ["BiocGenerics"]
},
"Bioc_gff": {
"name": "Bioc.gff",
"version": "1.0.0",
"sha256": "0729zbfvhlbzir5icw1ixy46wabl19bi1l5x78hdgffpg8c66m5x",
"depends": ["BiocBaseUtils", "BiocGenerics", "BiocIO", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "XVector", "curl"]
},
"BiocBaseUtils": {
"name": "BiocBaseUtils",
"version": "1.12.0",
"sha256": "06ha45xxmh0jmk0jvjarf8151vlr6aw8j5a58krckk2n5y9chk48",
"depends": []
},
"BiocBook": {
"name": "BiocBook",
"version": "1.8.0",
"sha256": "0hsbfx3v9bx3lma7v7bnkc4bgixdhgbz3ynxq250zbarrd9vry0b",
"depends": ["BiocGenerics", "cli", "dplyr", "gert", "gh", "gitcreds", "glue", "httr", "pak", "purrr", "quarto", "renv", "rlang", "rprojroot", "stringr", "tibble", "usethis", "yaml"]
},
"BiocCheck": {
"name": "BiocCheck",
"version": "1.46.0",
"sha256": "0fb114cdk8xl9r4kgvril4b8zw082f32mdrxwk564byz5r5r41cl",
"depends": ["BiocBaseUtils", "BiocFileCache", "BiocManager", "biocViews", "callr", "cli", "codetools", "graph", "httr2", "knitr", "rvest", "stringdist"]
},
"BiocFHIR": {
"name": "BiocFHIR",
"version": "1.12.0",
"sha256": "0b8q7v68h22nzby9b54kz058yvk59wkxww04j886bdjsi4lp46cd",
"depends": ["BiocBaseUtils", "DT", "dplyr", "graph", "jsonlite", "shiny", "tidyr", "visNetwork"]
},
"BiocFileCache": {
"name": "BiocFileCache",
"version": "3.0.0",
"sha256": "0gcrvmbqbic7jwk3cnd004d57mazd4ynp2p72l24b7dnrl10ggqm",
"depends": ["DBI", "RSQLite", "curl", "dbplyr", "dplyr", "filelock", "httr2"]
},
"BiocGenerics": {
"name": "BiocGenerics",
"version": "0.56.0",
"sha256": "1q38kdnnlndjbp5zzsfw0a0hkih08ivlqbsxz66s8rx77kv5yy8p",
"depends": ["generics"]
},
"BiocHail": {
"name": "BiocHail",
"version": "1.10.0",
"sha256": "1qh7vdkpdll2l6ghhcdp8m17bcn9y0yd5r2jcm33qgf3xwg0l1pc",
"depends": ["BiocFileCache", "BiocGenerics", "basilisk", "dplyr", "reticulate"]
},
"BiocHubsShiny": {
"name": "BiocHubsShiny",
"version": "1.10.0",
"sha256": "0ffskx4zg1hcb7avaipvgaj3m3ybwmjsp34i9hng6z9x9ivxyzx6",
"depends": ["AnnotationHub", "DT", "ExperimentHub", "S4Vectors", "htmlwidgets", "rclipboard", "shiny", "shinyAce", "shinybiocloader", "shinyjs", "shinythemes"]
},
"BiocIO": {
"name": "BiocIO",
"version": "1.20.0",
"sha256": "12yd8dqs8flcq8k9f5ndk4kyjccm4bw1ml2mn7na4zyi14xq8xw1",
"depends": ["BiocGenerics", "S4Vectors"]
},
"BiocNeighbors": {
"name": "BiocNeighbors",
"version": "2.4.0",
"sha256": "1yx09x4rg254gl34kqzx1hqky7y3waxbmcqhnvss6n3wrbswfrvk",
"depends": ["Rcpp", "assorthead"]
},
"BiocParallel": {
"name": "BiocParallel",
"version": "1.44.0",
"sha256": "1hi3k85ywc8r0sw6fys4987j8mr5vhkha4bcb3hc5fdfnpk6j81v",
"depends": ["BH", "codetools", "cpp11", "futile_logger", "snow"]
},
"BiocPkgTools": {
"name": "BiocPkgTools",
"version": "1.27.12",
"sha256": "03z6b711071k15j8vlm4zgb36vli3y3zh1lnglz1xyimmvhvn9cp",
"depends": ["BiocFileCache", "BiocManager", "DT", "RBGL", "biocViews", "curl", "dplyr", "gh", "glue", "graph", "htmltools", "htmlwidgets", "httr", "httr2", "igraph", "jsonlite", "lubridate", "purrr", "readr", "rlang", "rvest", "stringr", "tibble", "tidyr", "xml2", "yaml"]
},
"BiocSet": {
"name": "BiocSet",
"version": "1.24.0",
"sha256": "06mjk88gm562rmnzb3bj56s5cc4griwlisvv5x4f3av9xlks7mam",
"depends": ["AnnotationDbi", "BiocIO", "KEGGREST", "S4Vectors", "dplyr", "ontologyIndex", "plyr", "rlang", "tibble", "tidyr"]
},
"BiocSingular": {
"name": "BiocSingular",
"version": "1.26.0",
"sha256": "0qyb6a9qay1my04ni2xwpkln5rinlyryhl6x66nqcrv56q8kig5y",
"depends": ["BiocGenerics", "BiocParallel", "DelayedArray", "Matrix", "Rcpp", "S4Vectors", "ScaledMatrix", "assorthead", "beachmat", "irlba", "rsvd"]
},
"BiocSklearn": {
"name": "BiocSklearn",
"version": "1.32.0",
"sha256": "0963xw4vyqlsmmg7i8xk0wb1md3z65znvbyh3i5bzidbnwfi0lmk",
"depends": ["SummarizedExperiment", "basilisk", "reticulate"]
},
"BiocStyle": {
"name": "BiocStyle",
"version": "2.38.0",
"sha256": "0817kgf3d1lsqsg7a3vg5vrb9ia6g4j3x25cfk3j3sg64w3wz158",
"depends": ["BiocManager", "bookdown", "knitr", "rmarkdown", "yaml"]
},
"BiocVersion": {
"name": "BiocVersion",
"version": "3.22.0",
"sha256": "1113nqcv5xr2w1rj8vd4sq4a086fwwmgr6b6zv7aisi2hzqbv2j4",
"depends": []
},
"BiocWorkflowTools": {
"name": "BiocWorkflowTools",
"version": "1.36.0",
"sha256": "1jnch9vbfg4qw912wki4fs60gwjmwia3zksc75lk65wr6q57ibq4",
"depends": ["BiocStyle", "bookdown", "git2r", "httr", "knitr", "rmarkdown", "rstudioapi", "stringr", "usethis"]
},
"Biostrings": {
"name": "Biostrings",
"version": "2.78.0",
"sha256": "11fn7wiw3simgkgk2hka7aiac7n5hnzhjpjfl0ybx8820a76daxk",
"depends": ["BiocGenerics", "IRanges", "S4Vectors", "Seqinfo", "XVector", "crayon"]
},
"BloodGen3Module": {
"name": "BloodGen3Module",
"version": "1.18.0",
"sha256": "0d43amxrmab12xzdrir3xyw03wpkixxc4vz20n50h7ar2wp82cfg",
"depends": ["ComplexHeatmap", "ExperimentHub", "SummarizedExperiment", "V8", "circlize", "ggplot2", "gtools", "limma", "matrixStats", "preprocessCore", "randomcoloR", "reshape2", "testthat"]
},
"BreastSubtypeR": {
"name": "BreastSubtypeR",
"version": "1.2.0",
"sha256": "03v3ql4lrq7wz4aszyg5ssjqyf6nk33jp1xf5f1nsfm2jn9zqvqn",
"depends": ["Biobase", "ComplexHeatmap", "RColorBrewer", "SummarizedExperiment", "circlize", "data_table", "dplyr", "e1071", "edgeR", "ggplot2", "ggrepel", "impute", "magrittr", "rlang", "stringr", "tidyselect", "withr"]
},
"BridgeDbR": {
"name": "BridgeDbR",
"version": "2.20.0",
"sha256": "1znqm7djm0qapf6bg9z8y7h0hyp78b9831g8i2g4h87qn937s6mg",
"depends": ["curl", "rJava"]
},
"BrowserViz": {
"name": "BrowserViz",
"version": "2.32.0",
"sha256": "13qgng7innngs46x2zkng4irsn476crqn2f6a4qd48gc503ynpai",
"depends": ["BiocGenerics", "httpuv", "jsonlite"]
},
"BufferedMatrix": {
"name": "BufferedMatrix",
"version": "1.74.0",
"sha256": "1fig1pjpvr2zkbp4kypr9bbyp8774sq7lxvr6ianw5ikbp5pf9jv",
"depends": []
},
"BufferedMatrixMethods": {
"name": "BufferedMatrixMethods",
"version": "1.74.0",
"sha256": "1x3pizdv9p6axg08h5pk7wqw851rq7djymr9c9r7fpwnkqbfiv7k",
"depends": ["BufferedMatrix"]
},
"BulkSignalR": {
"name": "BulkSignalR",
"version": "1.2.0",
"sha256": "0lx8lfkly78cvmlgj9pscavi7is283ppb0jplgvzm15d5is91376",
"depends": ["BiocFileCache", "ComplexHeatmap", "RANN", "RCurl", "Rtsne", "SpatialExperiment", "SummarizedExperiment", "circlize", "cli", "curl", "doParallel", "foreach", "ggalluvial", "ggplot2", "ggrepel", "glmnet", "gridExtra", "httr2", "igraph", "jsonlite", "matrixStats", "multtest", "orthogene", "rlang", "scales", "stabledist"]
},
"BumpyMatrix": {
"name": "BumpyMatrix",
"version": "1.18.0",
"sha256": "0xz9yqycp91k5m9rf58lp2fvbx44k5lf9wpanrid4v50j82hyipx",
"depends": ["IRanges", "Matrix", "S4Vectors"]
},
"CAEN": {
"name": "CAEN",
"version": "1.18.0",
"sha256": "0knnz2czma0fx3rv6mdrgqs1d3xn883wy9s74g670x4dswfk3vzg",
"depends": ["PoiClaClu", "SummarizedExperiment"]
},
"CAFE": {
"name": "CAFE",
"version": "1.46.0",
"sha256": "13nygknhnwczy6zq6xb18in2ji0drv2wz1xk0ynvz1c6dgsyhb6p",
"depends": ["Biobase", "GenomicRanges", "IRanges", "affy", "annotate", "biovizBase", "ggbio", "ggplot2", "gridExtra"]
},
"CAGEfightR": {
"name": "CAGEfightR",
"version": "1.30.0",
"sha256": "0n2bgzxyhj6pp3zcpk770s0pnhjf25ncgrg0bsxmnr7yl6m7gs4r",
"depends": ["BiocGenerics", "BiocParallel", "GenomicAlignments", "GenomicFeatures", "GenomicFiles", "GenomicInteractions", "GenomicRanges", "Gviz", "IRanges", "InteractionSet", "Matrix", "S4Vectors", "Seqinfo", "SummarizedExperiment", "assertthat", "pryr", "rtracklayer"]
},
"CAGEr": {
"name": "CAGEr",
"version": "2.16.0",
"sha256": "1s4fii9m1irymq5nnbffkj66aigz0rdbwgsxcddn6a7lqjz3xndn",
"depends": ["BSgenome", "BiocGenerics", "BiocParallel", "Biostrings", "CAGEfightR", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "KernSmooth", "Matrix", "MultiAssayExperiment", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "VGAM", "data_table", "formula_tools", "ggplot2", "gtools", "memoise", "plyr", "reshape2", "rlang", "rtracklayer", "scales", "som", "stringdist", "stringi", "vegan"]
},
"CAMERA": {
"name": "CAMERA",
"version": "1.66.0",
"sha256": "1sxdpnwyy2ai4f4za5dh9hlksz772a4cc86qjzm24f7j27hw44zm",
"depends": ["Biobase", "Hmisc", "RBGL", "graph", "igraph", "xcms"]
},
"CARDspa": {
"name": "CARDspa",
"version": "1.2.0",
"sha256": "04n4pffqrpgf57crdg3pg0av510y73fkwm6irsvy1kdj183585vv",
"depends": ["BiocParallel", "MCMCpack", "Matrix", "NMF", "RANN", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppML", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "concaveman", "dplyr", "fields", "ggcorrplot", "ggplot2", "gtools", "nnls", "reshape2", "scatterpie", "sf", "sp", "spatstat_random", "wrMisc"]
},
"CARNIVAL": {
"name": "CARNIVAL",
"version": "2.20.0",
"sha256": "1d9nbns330mgi4nkzfvvaxg50lafmf3nd93lrwflsi8mb9p1pjp3",
"depends": ["dplyr", "igraph", "lpSolve", "readr", "rjson", "rmarkdown", "stringr", "tibble", "tidyr"]
},
"CATALYST": {
"name": "CATALYST",
"version": "1.34.0",
"sha256": "0fp0sg010kb7nq2c1v68rw94z5l62vq6wql3w8690baivrp1crj7",
"depends": ["ComplexHeatmap", "ConsensusClusterPlus", "FlowSOM", "Matrix", "RColorBrewer", "Rtsne", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "circlize", "cowplot", "data_table", "dplyr", "drc", "flowCore", "ggplot2", "ggrepel", "ggridges", "gridExtra", "matrixStats", "nnls", "purrr", "reshape2", "scales", "scater"]
},
"CBN2Path": {
"name": "CBN2Path",
"version": "0.99.18",
"sha256": "03sa6j6mbf16gd9zwv4j6hbv8gd2la67h2vk6qmww49rikijmmx4",
"depends": ["BiocParallel", "R6", "TCGAbiolinks", "coda", "cowplot", "ggplot2", "ggraph", "igraph", "magrittr", "patchwork", "rlang", "tidygraph"]
},
"CBNplot": {
"name": "CBNplot",
"version": "1.10.0",
"sha256": "169kj6snwb678q9y253bk3xx6ysv55plmrmf5rc2qhq7a0acarbf",
"depends": ["BiocFileCache", "ExperimentHub", "Rmpfr", "bnlearn", "clusterProfiler", "depmap", "dplyr", "enrichplot", "ggdist", "ggforce", "ggplot2", "ggraph", "graphite", "graphlayouts", "igraph", "magrittr", "org_Hs_eg_db", "patchwork", "purrr", "pvclust", "reshape2", "rlang", "stringr", "tidyr"]
},
"CCAFE": {
"name": "CCAFE",
"version": "1.2.0",
"sha256": "1f8b2ay5dmpkyhwik0wks4k3mbqa97p5akwdycggprrgknmk24yw",
"depends": ["VariantAnnotation", "dplyr"]
},
"CCPROMISE": {
"name": "CCPROMISE",
"version": "1.36.0",
"sha256": "1qbmkmg5hyxrk5dsb33yax47f82b1j9sq1rmg5z9zq5jmy8d5lab",
"depends": ["Biobase", "CCP", "GSEABase", "PROMISE"]
},
"CCPlotR": {
"name": "CCPlotR",
"version": "1.8.0",
"sha256": "1a6pkyl36g5wi8f14hnyn8x97vclmh84l3dcy6gd5h9vddy9kbhg",
"depends": ["ComplexHeatmap", "RColorBrewer", "circlize", "dplyr", "forcats", "ggbump", "ggh4x", "ggplot2", "ggraph", "ggtext", "igraph", "patchwork", "plyr", "scales", "scatterpie", "stringr", "tibble", "tidyr", "viridis"]
},
"CDI": {
"name": "CDI",
"version": "1.8.0",
"sha256": "1k5sxbbmcvb4widaf1r9fzlrhx6q6gqlpiy7lcfrhkhg8l8k2xz6",
"depends": ["BiocParallel", "Seurat", "SeuratObject", "SingleCellExperiment", "SummarizedExperiment", "ggplot2", "ggsci", "matrixStats", "reshape2"]
},
"CEMiTool": {
"name": "CEMiTool",
"version": "1.34.0",
"sha256": "0lbql9dmriz2lpvynbl2yw24mi2acipqq2wmz40rha9jqjdq8lq8",
"depends": ["DT", "WGCNA", "clusterProfiler", "data_table", "dplyr", "fastcluster", "fgsea", "ggdendro", "ggplot2", "ggpmisc", "ggrepel", "ggthemes", "gridExtra", "gtable", "htmltools", "igraph", "intergraph", "knitr", "matrixStats", "network", "pracma", "rmarkdown", "scales", "sna", "stringr"]
},
"CFAssay": {
"name": "CFAssay",
"version": "1.44.0",
"sha256": "0m8p932rzlnnh6wa9d05y9pn1h6zzgv97qkg25xhcfwk98jb3qhj",
"depends": []
},
"CGEN": {
"name": "CGEN",
"version": "3.46.0",
"sha256": "01a6qhrib1d0xv56s2ns4p76zgvq38dsivz6z1l0dqgnjq593br0",
"depends": ["mvtnorm", "survival"]
},
"CGHbase": {
"name": "CGHbase",
"version": "1.70.0",
"sha256": "0hkbm2q24qaga6py5gvdcirrb0paspdb9s7nkvgi7fdrdw8r7lg0",
"depends": ["Biobase", "marray"]
},
"CGHcall": {
"name": "CGHcall",
"version": "2.72.0",
"sha256": "0wb3fmr8f2cdfbq2a3bdpk3v5fwsvr5632k4dsyi9zi33lr0l9zc",
"depends": ["Biobase", "CGHbase", "DNAcopy", "impute", "snowfall"]
},
"CGHnormaliter": {
"name": "CGHnormaliter",
"version": "1.64.0",
"sha256": "0rbbffmfs0a4my9lfha2wicyj37hyxyhz2f5z1x71brfgyl2gc8l",
"depends": ["Biobase", "CGHbase", "CGHcall"]
},
"CGHregions": {
"name": "CGHregions",
"version": "1.68.0",
"sha256": "1rsr876426ncc12x021z2ll17indvxh82w8dflljiwshbw5fyvqi",
"depends": ["Biobase", "CGHbase"]
},
"CHETAH": {
"name": "CHETAH",
"version": "1.26.0",
"sha256": "0nk99mc25ylxl6mzmswswwhyjd1cd4g4mvw8mk2y0anhlldzma83",
"depends": ["S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "bioDist", "corrplot", "cowplot", "dendextend", "ggplot2", "pheatmap", "plotly", "reshape2", "shiny"]
},
"CHRONOS": {
"name": "CHRONOS",
"version": "1.38.0",
"sha256": "0gkwwx2ka5rn7yl068iy7q5cs3xidyhpy3jja1xx27ri5blql290",
"depends": ["RBGL", "RCurl", "XML", "biomaRt", "circlize", "doParallel", "foreach", "graph", "igraph", "openxlsx", "rJava"]
},
"CIMICE": {
"name": "CIMICE",
"version": "1.18.0",
"sha256": "10nl1dgvp93vgrgib49n3v4jr8jpl8xgc02gf4zr8s5gbsjrd820",
"depends": ["Matrix", "assertthat", "dplyr", "expm", "ggcorrplot", "ggplot2", "ggraph", "glue", "igraph", "maftools", "networkD3", "purrr", "tidygraph", "tidyr", "visNetwork"]
},
"CMA": {
"name": "CMA",
"version": "1.68.0",
"sha256": "0z62z9a1jvddddkqxsajllldadgwcp6ir5h12adb0wys9v2v8h4m",
"depends": ["Biobase"]
},
"CNAnorm": {
"name": "CNAnorm",
"version": "1.56.0",
"sha256": "1jkq0ryv2s7r693y75c1l7dy8p2r9mq9yh369ibv0ybj8r0fa18b",
"depends": ["DNAcopy"]
},
"CNEr": {
"name": "CNEr",
"version": "1.46.0",
"sha256": "18ii60kxr3f1rsydj29ml49gjicnciq7ypvrm1dz2rv4app0bp5j",
"depends": ["BiocGenerics", "Biostrings", "DBI", "GO_db", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "KEGGREST", "RSQLite", "R_utils", "S4Vectors", "Seqinfo", "XVector", "annotate", "ggplot2", "poweRlaw", "pwalign", "readr", "reshape2", "rtracklayer"]
},
"CNORdt": {
"name": "CNORdt",
"version": "1.52.0",
"sha256": "1237z0l800dh45dvj02v2mys9mhh3pg0as760l3lvn95vf0shbj1",
"depends": ["CellNOptR", "abind"]
},
"CNORfeeder": {
"name": "CNORfeeder",
"version": "1.50.0",
"sha256": "1xfymy60fadhzphyin8n5f035c3sj8rd9xcwyas2r1q53nyliwmz",
"depends": ["CellNOptR", "graph"]
},
"CNORfuzzy": {
"name": "CNORfuzzy",
"version": "1.52.0",
"sha256": "0fcda4rmx278i60kgcj0rk70nrf5rqq3sa5b0fn8dqj28p879slb",
"depends": ["CellNOptR", "nloptr"]
},
"CNORode": {
"name": "CNORode",
"version": "1.52.0",
"sha256": "1dma5y9bwidkwr29379iahs41hb6gfczhsx6qncivmp7f62fs49v",
"depends": ["CellNOptR", "genalg"]
},
"CNTools": {
"name": "CNTools",
"version": "1.66.0",
"sha256": "0ya5l1hijqyknzxspdyahnnrrkfl9li54apzhay4lx6qcim7r7dy",
"depends": ["genefilter"]
},
"CNVMetrics": {
"name": "CNVMetrics",
"version": "1.13.0",
"sha256": "0pvlc1blwqar2agnl3hdm467x162n8i3sb6kpzqsr2xw44zvx2w2",
"depends": ["BiocParallel", "GenomicRanges", "IRanges", "S4Vectors", "gridExtra", "magrittr", "pheatmap", "rBeta2009"]
},
"CNVPanelizer": {
"name": "CNVPanelizer",
"version": "1.42.0",
"sha256": "19f3cipi5srwhm33mf12l3840da7dvbpj3yaw1vb1ljhq076fq23",
"depends": ["BiocGenerics", "GenomeInfoDb", "GenomicRanges", "IRanges", "NOISeq", "Rsamtools", "S4Vectors", "foreach", "ggplot2", "gplots", "openxlsx", "plyr", "reshape2", "shiny", "shinyFiles", "shinyjs", "stringr", "testthat"]
},
"CNVRanger": {
"name": "CNVRanger",
"version": "1.26.0",
"sha256": "0ajca3q7ij72wvdhjv3yb2dxz014ivhsrkdq8zil6hkdcg0afzhi",
"depends": ["BiocGenerics", "BiocParallel", "GDSArray", "GenomeInfoDb", "GenomicRanges", "IRanges", "RaggedExperiment", "S4Vectors", "SNPRelate", "SummarizedExperiment", "data_table", "edgeR", "gdsfmt", "lattice", "limma", "plyr", "qqman", "rappdirs", "reshape2"]
},
"CNVfilteR": {
"name": "CNVfilteR",
"version": "1.24.0",
"sha256": "0qgd3fyy49yqh13nz1vgqsmwrqsfx5as42ydp2qz6qgzj01j781g",
"depends": ["Biostrings", "CopyNumberPlots", "GenomeInfoDb", "GenomicRanges", "IRanges", "Rsamtools", "SummarizedExperiment", "VariantAnnotation", "assertthat", "karyoploteR", "pracma", "regioneR"]
},
"CNViz": {
"name": "CNViz",
"version": "1.18.0",
"sha256": "0f6ah1qvncb87wb6x0jngjh3r6b1ipy8g0hik5hvq6gmwy4n53is",
"depends": ["CopyNumberPlots", "DT", "GenomicRanges", "dplyr", "karyoploteR", "magrittr", "plotly", "scales", "shiny"]
},
"CNVrd2": {
"name": "CNVrd2",
"version": "1.48.0",
"sha256": "120bm81m58b08y4wkk1wqb58xsiqn7jf8adyvga5kjx2gfav61rp",
"depends": ["DNAcopy", "IRanges", "Rsamtools", "VariantAnnotation", "ggplot2", "gridExtra", "rjags"]
},
"COCOA": {
"name": "COCOA",
"version": "2.24.0",
"sha256": "00iwq26f4gjcim4ia0lqsz1mpakifvh2za23s2ds7033r4barg4j",
"depends": ["Biobase", "BiocGenerics", "ComplexHeatmap", "GenomicRanges", "IRanges", "MIRA", "S4Vectors", "data_table", "fitdistrplus", "ggplot2", "simpleCache", "tidyr"]
},
"CODEX": {
"name": "CODEX",
"version": "1.42.0",
"sha256": "09di6yq4m6p7hzk6gasavgf1h91160apac6w5wp1qzl7rjxkw443",
"depends": ["BSgenome_Hsapiens_UCSC_hg19", "Biostrings", "GenomeInfoDb", "IRanges", "Rsamtools", "S4Vectors"]
},
"COMPASS": {
"name": "COMPASS",
"version": "1.48.0",
"sha256": "0w20swwqanphskmb1ds2yby16ynxy4br443504bwm1bk830piqmi",
"depends": ["BiocStyle", "RColorBrewer", "Rcpp", "abind", "clue", "coda", "data_table", "dplyr", "foreach", "knitr", "magrittr", "pdist", "plyr", "reshape2", "rlang", "rmarkdown", "scales", "tidyr"]
},
"CONFESS": {
"name": "CONFESS",
"version": "1.38.0",
"sha256": "1nwsm4hmyndnkqi8xwhr1z7vfysds2v2j0mm37ip1r6sc2l87gln",
"depends": ["EBImage", "MASS", "SamSPECTRAL", "changepoint", "cluster", "contrast", "data_table", "ecp", "flexmix", "flowClust", "flowCore", "flowMeans", "flowMerge", "flowPeaks", "foreach", "ggplot2", "limma", "moments", "outliers", "plotrix", "raster", "readbitmap", "reshape2", "waveslim", "wavethresh", "zoo"]
},
"CONSTANd": {
"name": "CONSTANd",
"version": "1.18.0",
"sha256": "0i25ggwn69dk34iwaa8krpba81g15k8f6aj31jzmv8j2x0fgbx8v",
"depends": []
},
"COSNet": {
"name": "COSNet",
"version": "1.44.0",
"sha256": "07ipxvl880kh0wcplq68yaimzijzss7q34f999a0h76zynr6736n",
"depends": []
},
"COTAN": {
"name": "COTAN",
"version": "2.10.0",
"sha256": "0msq2ij3ppyzpsbc7ziyrhgwpxw3a91bncb4xg3bzz1w396q0hq4",
"depends": ["BiocSingular", "ComplexHeatmap", "Matrix", "RColorBrewer", "RSpectra", "Rfast", "Seurat", "SingleCellExperiment", "assertthat", "circlize", "dendextend", "dplyr", "gghalves", "ggplot2", "ggrepel", "ggthemes", "parallelDist", "parallelly", "proxy", "rlang", "scales", "stringr", "tibble", "tidyr", "withr", "zeallot"]
},
"CPSM": {
"name": "CPSM",
"version": "1.2.0",
"sha256": "0a191x65v5vhyzcf16flqa7rs6xjq3ds6icv2r0263cjn0y21hiy",
"depends": ["Hmisc", "MASS", "MTLR", "Matrix", "SummarizedExperiment", "SurvMetrics", "caret", "ggfortify", "ggplot2", "glmnet", "preprocessCore", "randomForestSRC", "reshape2", "rms", "survival", "survminer"]
},
"CRISPRseek": {
"name": "CRISPRseek",
"version": "1.50.0",
"sha256": "1248b7jniz2d2cj3srrqfx0aaga42g9pymbhawwjcaasknyb83lp",
"depends": ["BSgenome", "BiocGenerics", "Biostrings", "DelayedArray", "GenomicFeatures", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "XVector", "data_table", "dplyr", "gtools", "hash", "keras", "mltools", "openxlsx", "reticulate", "rhdf5", "rio", "rlang", "seqinr", "stringr"]
},
"CRImage": {
"name": "CRImage",
"version": "1.58.0",
"sha256": "19yafswp9j5s0k1wd8891vlkqjgj7249mh075qg8gjaxknc0x7q2",
"depends": ["DNAcopy", "EBImage", "MASS", "aCGH", "e1071", "foreach", "sgeostat"]
},
"CSAR": {
"name": "CSAR",
"version": "1.62.0",
"sha256": "0bi6iav4255bvbidi1cy6k1dnvijypy8ypxd2kg6sfcgsz8pgir6",
"depends": ["GenomicRanges", "IRanges", "S4Vectors", "Seqinfo"]
},
"CSOA": {
"name": "CSOA",
"version": "1.0.0",
"sha256": "0rs8qn6i55xhf5ci19yihc4wdq51zyav1zx5ax1z6ivd5v0jhv9g",
"depends": ["Seurat", "SeuratObject", "SummarizedExperiment", "bayesbio", "dplyr", "ggplot2", "henna", "kerntools", "qs", "reshape2", "rlang", "sgof", "spatstat_utils", "textshape", "wesanderson"]
},
"CSSQ": {
"name": "CSSQ",
"version": "1.22.0",
"sha256": "15nn72g3a1ji4fla29s5jdwy8ihswg1gv9vjc2cglxlixisrj9jq",
"depends": ["GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "SummarizedExperiment", "ggplot2", "rtracklayer"]
},
"CTDquerier": {
"name": "CTDquerier",
"version": "2.18.0",
"sha256": "0rf6qf6ycxn183njf7qj94rj7g5m9p44c5wyysn6fkw3yxlvqq3a",
"depends": ["BiocFileCache", "RCurl", "S4Vectors", "ggplot2", "gridExtra", "igraph", "stringdist", "stringr"]
},
"CTSV": {
"name": "CTSV",
"version": "1.12.0",
"sha256": "10df3fd2jj29sf05p36l6aswibqhfi9x6sa6ql7z0zhhr3frprjv",
"depends": ["BiocParallel", "SpatialExperiment", "SummarizedExperiment", "knitr", "pscl", "qvalue"]
},
"CTdata": {
"name": "CTdata",
"version": "1.10.0",
"sha256": "0izpgr94hqha38aik6dvip6wbrzynyqwpms403sd6f0vcm559k51",
"depends": ["ExperimentHub"]
},
"CTexploreR": {
"name": "CTexploreR",
"version": "1.6.0",
"sha256": "0c5x958gg18lm6q9g7i32p13ng3y0z1lpgds3mpsj58lv2iavpn8",
"depends": ["BiocGenerics", "CTdata", "ComplexHeatmap", "GenomicRanges", "IRanges", "MatrixGenerics", "SingleCellExperiment", "SummarizedExperiment", "circlize", "dplyr", "ggplot2", "ggrepel", "rlang", "tibble", "tidyr"]
},
"CaDrA": {
"name": "CaDrA",
"version": "1.8.0",
"sha256": "0x3d5qam54x177qbk0z2qdylb2kx93hb6616z5148bjn2bnwlhy3",
"depends": ["MASS", "R_cache", "SummarizedExperiment", "doParallel", "ggplot2", "gplots", "gtable", "knnmi", "misc3d", "plyr", "ppcor", "reshape2"]
},
"CaMutQC": {
"name": "CaMutQC",
"version": "1.6.0",
"sha256": "13j264akf38aln2kc3899yj7r77fs255vhp2hb2zm2h0fxm006ry",
"depends": ["DT", "MesKit", "clusterProfiler", "data_table", "dplyr", "ggplot2", "maftools", "org_Hs_eg_db", "stringr", "tidyr", "vcfR"]
},
"CalibraCurve": {
"name": "CalibraCurve",
"version": "1.0.0",
"sha256": "0x73svnc2h6ib43zagq0qaavqv16zp26gg7hd9525mfkxcbhpqrv",
"depends": ["SummarizedExperiment", "checkmate", "dplyr", "ggplot2", "magrittr", "openxlsx", "scales", "tidyr"]
},
"Cardinal": {
"name": "Cardinal",
"version": "3.12.0",
"sha256": "0399hpf81s5hfd2yrq62md29p7y1f55wqb6kn9n3kg6i1z12qdpn",
"depends": ["Biobase", "BiocGenerics", "BiocParallel", "CardinalIO", "EBImage", "Matrix", "ProtGenerics", "S4Vectors", "irlba", "matter", "nlme"]
},
"CardinalIO": {
"name": "CardinalIO",
"version": "1.8.0",
"sha256": "1qfb61gbrjq05dd53smdvk04gcgvr15jkpnkcjydl2g12sdnxfnp",
"depends": ["BiocParallel", "S4Vectors", "matter", "ontologyIndex"]
},
"Category": {
"name": "Category",
"version": "2.76.0",
"sha256": "1awaxnmnzs260pl2lzvmbhds17347kjln11iwbpabisyrvx8gzb2",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "DBI", "GSEABase", "Matrix", "RBGL", "annotate", "genefilter", "graph"]
},
"CatsCradle": {
"name": "CatsCradle",
"version": "1.3.3",
"sha256": "1rrwxjscma49bmhpyx8gv4lgqyrngqzk77phbryajpmagw81mfwl",
"depends": ["EBImage", "Matrix", "Rfast", "S4Vectors", "Seurat", "SeuratObject", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "abind", "data_table", "geometry", "ggplot2", "igraph", "msigdbr", "networkD3", "pheatmap", "pracma", "rdist", "reshape2", "stringr"]
},
"CausalR": {
"name": "CausalR",
"version": "1.42.0",
"sha256": "0h4p9ml4kv0wbphs9whbyq18yakq8wlwkvac1kg5q6ym43v8w2zw",
"depends": ["igraph"]
},
"CeTF": {
"name": "CeTF",
"version": "1.22.0",
"sha256": "0ri9kkx8iysz54iq79r3ngmgw0zhwl9svw82l5a67jjd74wwai1l",
"depends": ["ComplexHeatmap", "DESeq2", "GGally", "GenomicTools_fileHandler", "Matrix", "RCy3", "Rcpp", "RcppArmadillo", "S4Vectors", "SummarizedExperiment", "circlize", "clusterProfiler", "dplyr", "ggnetwork", "ggplot2", "ggpubr", "ggrepel", "igraph", "network"]
},
"CellBarcode": {
"name": "CellBarcode",
"version": "1.16.0",
"sha256": "033ysn8kins6w66nkl6m5spc65g1k1bi08adnp69jz2ygr0drf5y",
"depends": ["BH", "Biostrings", "Ckmeans_1d_dp", "Rcpp", "Rsamtools", "S4Vectors", "ShortRead", "data_table", "egg", "ggplot2", "magrittr", "plyr", "seqinr", "stringr"]
},
"CellBench": {
"name": "CellBench",
"version": "1.26.0",
"sha256": "0zqa72c2g92ibzy5wgpj5g4g6vnfsg0jk1j49avbh0jrmhkxk4jw",
"depends": ["BiocFileCache", "BiocGenerics", "BiocParallel", "SingleCellExperiment", "assertthat", "dplyr", "glue", "lubridate", "magrittr", "memoise", "purrr", "rappdirs", "rlang", "tibble", "tidyr", "tidyselect"]
},
"CellMapper": {
"name": "CellMapper",
"version": "1.36.0",
"sha256": "0vrwxiqbrn1ij1kr17ppzgb22livf78x1j8sj6shv7g5as09mabk",
"depends": ["S4Vectors"]
},
"CellMixS": {
"name": "CellMixS",
"version": "1.26.0",
"sha256": "1asdsy8i9wlwnxjfkvxa28n2sdkphd5qn0v7lkhj7vk9nh0f4zf2",
"depends": ["BiocGenerics", "BiocNeighbors", "BiocParallel", "SingleCellExperiment", "SummarizedExperiment", "cowplot", "dplyr", "ggplot2", "ggridges", "kSamples", "magrittr", "purrr", "scater", "tidyr", "viridis"]
},
"CellNOptR": {
"name": "CellNOptR",
"version": "1.56.0",
"sha256": "0p4jj80qhll4ih0mxz32f2s29cfxmwcxd2ipsb6rr0081c3jbiwi",
"depends": ["RBGL", "RCurl", "Rgraphviz", "XML", "ggplot2", "graph", "igraph", "rmarkdown", "stringi", "stringr"]
},
"CellTrails": {
"name": "CellTrails",
"version": "1.28.0",
"sha256": "0ssyb5qfnbcippqj2d9y9lvnimqicmzb4rhfhpxhi2rflra5rlp6",
"depends": ["Biobase", "BiocGenerics", "EnvStats", "Rtsne", "SingleCellExperiment", "SummarizedExperiment", "cba", "dendextend", "dtw", "ggplot2", "ggrepel", "igraph", "maptree", "mgcv", "reshape2"]
},
"CelliD": {
"name": "CelliD",
"version": "1.18.0",
"sha256": "1bvj7n2qxfvy1fmjqmm1w65fcj7fy5h74i0jgl0a0940mlhd7s9v",
"depends": ["BiocParallel", "Matrix", "Rcpp", "RcppArmadillo", "Rtsne", "Seurat", "SingleCellExperiment", "SummarizedExperiment", "data_table", "fastmatch", "fgsea", "ggplot2", "glue", "irlba", "matrixStats", "pbapply", "reticulate", "scater", "stringr", "tictoc", "umap"]
},
"Cepo": {
"name": "Cepo",
"version": "1.16.0",
"sha256": "0j3z7pycc30zk1j2b7skk2jav4z9cp6n1qhzn9gji6qzxkzrzpyb",
"depends": ["BiocParallel", "DelayedArray", "DelayedMatrixStats", "GSEABase", "HDF5Array", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "dplyr", "ggplot2", "patchwork", "purrr", "reshape2", "rlang"]
},
"CexoR": {
"name": "CexoR",
"version": "1.48.0",
"sha256": "1ah5564xyxm2c1rg5qircsz7cg3wil3q4kmxmvwc2nw867pdzhk4",
"depends": ["GenomicRanges", "IRanges", "RColorBrewer", "Rsamtools", "S4Vectors", "Seqinfo", "genomation", "idr", "rtracklayer"]
},
"ChAMP": {
"name": "ChAMP",
"version": "2.40.0",
"sha256": "151q3702xfll347y9yfbslcagd6idagk69jv69vd3yqzwacg58w2",
"depends": ["ChAMPdata", "DMRcate", "DNAcopy", "DT", "GenomicRanges", "Hmisc", "Illumina450ProbeVariants_db", "IlluminaHumanMethylation450kmanifest", "IlluminaHumanMethylationEPICanno_ilm10b4_hg19", "IlluminaHumanMethylationEPICmanifest", "RColorBrewer", "RPMM", "bumphunter", "combinat", "dendextend", "doParallel", "ggplot2", "globaltest", "goseq", "illuminaio", "impute", "isva", "limma", "marray", "matrixStats", "minfi", "missMethyl", "plotly", "plyr", "preprocessCore", "prettydoc", "quadprog", "qvalue", "rmarkdown", "shiny", "shinythemes", "sva", "wateRmelon"]
},
"ChIPComp": {
"name": "ChIPComp",
"version": "1.40.0",
"sha256": "0mbsrq97bfi3fpf2lyq1q2bqrhl1y2klk6x2ydvph2m0k3zbhp5n",
"depends": ["BSgenome_Hsapiens_UCSC_hg19", "BSgenome_Mmusculus_UCSC_mm9", "BiocGenerics", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "limma", "rtracklayer"]
},
"ChIPXpress": {
"name": "ChIPXpress",
"version": "1.54.0",
"sha256": "1rpn1c07by5zjkh2nnm5jrcz81ixp6zmhfj51a13hcz1bsa4as16",
"depends": ["Biobase", "ChIPXpressData", "GEOquery", "affy", "biganalytics", "bigmemory", "frma"]
},
"ChIPanalyser": {
"name": "ChIPanalyser",
"version": "1.32.0",
"sha256": "1sd9wcdn4miawyyp5z5q2xqjvzhgjpahdbha9fgpgbnlx8qq7yvg",
"depends": ["BSgenome", "BiocManager", "Biostrings", "GenomeInfoDb", "GenomicRanges", "IRanges", "RColorBrewer", "ROCR", "RcppRoll", "S4Vectors", "rtracklayer"]
},
"ChIPexoQual": {
"name": "ChIPexoQual",
"version": "1.34.0",
"sha256": "1z72y7jfl1gmcgkkrjqjhj8cq8c224llrdihgrr2zj2k7nsqhnkd",
"depends": ["BiocParallel", "GenomicAlignments", "GenomicRanges", "IRanges", "RColorBrewer", "Rsamtools", "S4Vectors", "Seqinfo", "biovizBase", "broom", "data_table", "dplyr", "ggplot2", "hexbin", "rmarkdown", "scales", "viridis"]
},
"ChIPpeakAnno": {
"name": "ChIPpeakAnno",
"version": "3.44.0",
"sha256": "0i3iw6wafpwb2l99ay306wdafjb25wwpjvrggq515vibz7zvrxh2",
"depends": ["AnnotationDbi", "BiocGenerics", "Biostrings", "DBI", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "InteractionSet", "KEGGREST", "RBGL", "Rsamtools", "S4Vectors", "SummarizedExperiment", "VennDiagram", "biomaRt", "data_table", "dplyr", "ensembldb", "ggplot2", "graph", "matrixStats", "multtest", "pwalign", "regioneR", "rtracklayer", "scales", "stringr", "tibble", "tidyr", "universalmotif"]
},
"ChIPseeker": {
"name": "ChIPseeker",
"version": "1.45.0",
"sha256": "1rq9jj7gs3g2dvzpglhydiyd76l4i12kc47l9gl7lcvnwpvpkbn8",
"depends": ["AnnotationDbi", "BiocGenerics", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "RColorBrewer", "S4Vectors", "TxDb_Hsapiens_UCSC_hg19_knownGene", "aplot", "boot", "dplyr", "enrichplot", "ggplot2", "gplots", "gtools", "magrittr", "plotrix", "rlang", "rtracklayer", "scales", "tibble", "yulab_utils"]
},
"ChIPseqR": {
"name": "ChIPseqR",
"version": "1.64.0",
"sha256": "0zzmxaiz3n025qicf1vj4xlnz05xa8d0iahk6s3pvc91az4r35jc",
"depends": ["BiocGenerics", "Biostrings", "GenomicRanges", "HilbertVis", "IRanges", "S4Vectors", "ShortRead", "fBasics", "timsac"]
},
"ChIPsim": {
"name": "ChIPsim",
"version": "1.64.0",
"sha256": "0f3lvdn44njfk5172ds0g6zk0hcmx41mkhyz34gisbxm5w0ba578",
"depends": ["Biostrings", "IRanges", "ShortRead", "XVector"]
},
"ChemmineOB": {
"name": "ChemmineOB",
"version": "1.48.0",
"sha256": "03pw3758my4j5d94kg3vklqy6nmp2aw664d55kwd6ww21xi0b0ln",
"depends": ["BH", "BiocGenerics", "Rcpp"]
},
"ChemmineR": {
"name": "ChemmineR",
"version": "3.62.0",
"sha256": "0yvf72nz3s151hsclwk8ch0rypsm7a4z3w49ds7rnqd92q1h0rx5",
"depends": ["BH", "BiocGenerics", "DBI", "DT", "RCurl", "Rcpp", "base64enc", "digest", "ggplot2", "gridExtra", "jsonlite", "png", "rjson", "rsvg", "stringi"]
},
"Chicago": {
"name": "Chicago",
"version": "1.38.0",
"sha256": "1bmc7b6fgq5bw9msp4snycvw00r4wxasax9li92zsw3kva9ys941",
"depends": ["Delaporte", "Hmisc", "MASS", "data_table", "matrixStats"]
},
"ChromHeatMap": {
"name": "ChromHeatMap",
"version": "1.64.0",
"sha256": "0v499mfdhhbf9yspaayk6pdzarspjsdgj3swnfw8zwd1qiazbidp",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "GenomicRanges", "IRanges", "annotate", "rtracklayer"]
},
"ChromSCape": {
"name": "ChromSCape",
"version": "1.20.0",
"sha256": "103qfjjdzbi7nn3qlz28rm88p1qlphd98dqwmpr3fffg864kg885",
"depends": ["BiocParallel", "ConsensusClusterPlus", "DT", "DelayedArray", "GenomicRanges", "IRanges", "Matrix", "Rcpp", "Rsamtools", "Rtsne", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "batchelor", "colorRamps", "colourpicker", "coop", "dplyr", "edgeR", "forcats", "fs", "gggenes", "ggplot2", "ggrepel", "gridExtra", "irlba", "jsonlite", "kableExtra", "matrixTests", "msigdbr", "plotly", "qs", "qualV", "rlist", "rtracklayer", "scater", "scran", "shiny", "shinyFiles", "shinyWidgets", "shinycssloaders", "shinydashboard", "shinydashboardPlus", "shinyhelper", "shinyjs", "stringdist", "stringr", "tibble", "tidyr", "umap", "viridis"]
},
"Chromatograms": {
"name": "Chromatograms",
"version": "1.0.0",
"sha256": "1kam7kxcldag928m97zdp9665lg5ypd9nlamzz1hdamhd0ayqkg2",
"depends": ["BiocParallel", "MsCoreUtils", "ProtGenerics", "S4Vectors", "Spectra"]
},
"CircSeqAlignTk": {
"name": "CircSeqAlignTk",
"version": "1.12.0",
"sha256": "0494hwvdip55c44vkwr5a2y2nmv5q1r4nk2c6fdwrwc2wc4lg6jb",
"depends": ["BiocGenerics", "Biostrings", "IRanges", "R_utils", "Rbowtie2", "Rhisat2", "Rsamtools", "S4Vectors", "ShortRead", "dplyr", "ggplot2", "htmltools", "magrittr", "plotly", "rlang", "shiny", "shinyFiles", "shinyjs", "tidyr"]
},
"CiteFuse": {
"name": "CiteFuse",
"version": "1.22.0",
"sha256": "1s51ch8j0p7h2g13db0g1mcrg1kixby0jg75nx21aa55rjj1qrw7",
"depends": ["Matrix", "Rcpp", "Rtsne", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "compositions", "cowplot", "dbscan", "ggplot2", "ggraph", "ggridges", "gridExtra", "igraph", "mixtools", "pheatmap", "randomForest", "reshape2", "rhdf5", "rlang", "scales", "scran", "uwot"]
},
"ClassifyR": {
"name": "ClassifyR",
"version": "3.14.0",
"sha256": "1bxvd5nwjk3i3n6ygp11j22451gcsjq91vc118fp4sc7vk4fpabw",
"depends": ["BiocParallel", "MultiAssayExperiment", "S4Vectors", "broom", "dcanr", "dplyr", "genefilter", "generics", "ggplot2", "ggpubr", "ggupset", "ranger", "reshape2", "rlang", "survival", "tidyr"]
},
"CleanUpRNAseq": {
"name": "CleanUpRNAseq",
"version": "1.4.0",
"sha256": "0iz4rcbasg9ji5n074imsq2inwwr6vndr6hn94954cz2c7g73qsx",
"depends": ["AnnotationFilter", "BSgenome", "BiocGenerics", "Biostrings", "DESeq2", "GenomicRanges", "KernSmooth", "R6", "RColorBrewer", "Rsamtools", "Rsubread", "Seqinfo", "SummarizedExperiment", "edgeR", "ensembldb", "ggplot2", "ggrepel", "limma", "pheatmap", "qsmooth", "reshape2", "tximport"]
},
"Clomial": {
"name": "Clomial",
"version": "1.46.0",
"sha256": "0mkbfnj05pj5qfk5zc3zdyh32pm1arq1rv6yg4dp3mabh156w01z",
"depends": ["matrixStats", "permute"]
},
"CluMSID": {
"name": "CluMSID",
"version": "1.26.0",
"sha256": "15a4j5374cy5zw52h643csmwkcd9i6826ilm6sabm1hgq1134gmp",
"depends": ["Biobase", "GGally", "MSnbase", "RColorBrewer", "S4Vectors", "ape", "dbscan", "ggplot2", "gplots", "mzR", "network", "plotly", "sna"]
},
"ClustAll": {
"name": "ClustAll",
"version": "1.6.0",
"sha256": "1rvyrqdyg6qmi18qbv9mzhq1rdr24kbm9aizgrw67j9znmz70mxs",
"depends": ["ComplexHeatmap", "FactoMineR", "RColorBrewer", "bigstatsr", "circlize", "clValid", "cluster", "doSNOW", "dplyr", "flock", "foreach", "fpc", "ggplot2", "mice", "modeest", "networkD3", "pbapply"]
},
"ClustIRR": {
"name": "ClustIRR",
"version": "1.8.0",
"sha256": "1lk074kvgfxj6bwqv6jmbgx3nphh07sj5hlcpvy8695j9sjmjn5s",
"depends": ["BH", "Rcpp", "RcppEigen", "RcppParallel", "StanHeaders", "blaster", "dplyr", "future", "future_apply", "ggforce", "ggplot2", "igraph", "posterior", "reshape2", "rstan", "rstantools", "scales", "stringdist", "tidyr", "visNetwork"]
},
"ClusterFoldSimilarity": {
"name": "ClusterFoldSimilarity",
"version": "1.6.0",
"sha256": "08jhfqr7llnrm9b673vclnd9xqn37jzbmml0p5w7bqcvk4jy6cls",
"depends": ["BiocParallel", "Matrix", "Seurat", "SeuratObject", "SingleCellExperiment", "cowplot", "dplyr", "ggdendro", "ggplot2", "igraph", "reshape2", "scales"]
},
"ClusterJudge": {
"name": "ClusterJudge",
"version": "1.32.0",
"sha256": "00ybl4r3dhrfi3zagvpn7imd04c6xjd7a9vfyzpd5nk9kkxj5mhz",
"depends": ["httr", "infotheo", "jsonlite", "lattice", "latticeExtra"]
},
"ClusterSignificance": {
"name": "ClusterSignificance",
"version": "1.38.0",
"sha256": "1h7ik2yryy29sjsr3lgv8g7bqgm0a4b0w3mn10hk0ympaprdjmgd",
"depends": ["RColorBrewer", "pracma", "princurve", "scatterplot3d"]
},
"CoCiteStats": {
"name": "CoCiteStats",
"version": "1.82.0",
"sha256": "10szmhg289a8i8kcwb55dn4pbaiacgc2lsikn03733rxx81j54pi",
"depends": ["AnnotationDbi", "org_Hs_eg_db"]
},
"CoGAPS": {
"name": "CoGAPS",
"version": "3.30.0",
"sha256": "1clxww4nmgf1a9swyxz41050nar2svzsqfxj5gy4w29ak0di84p2",
"depends": ["BH", "BiocParallel", "RColorBrewer", "Rcpp", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "cluster", "dplyr", "fgsea", "forcats", "ggplot2", "gplots", "rhdf5", "testthat"]
},
"Cogito": {
"name": "Cogito",
"version": "1.16.0",
"sha256": "1bhig4q9pyrsm2gvl2h5j3ll963baqw2lr7d56baa8s5faz9wcw6",
"depends": ["AnnotationDbi", "BiocManager", "GenomicFeatures", "GenomicRanges", "S4Vectors", "Seqinfo", "TxDb_Mmusculus_UCSC_mm9_knownGene", "entropy", "ggplot2", "jsonlite", "magrittr", "rmarkdown"]
},
"ComPrAn": {
"name": "ComPrAn",
"version": "1.18.0",
"sha256": "1im8vwdllwmrmrdxc2rjjm57896z9rsq3z2gkx27d8yrvvba833p",
"depends": ["DT", "RColorBrewer", "VennDiagram", "data_table", "dplyr", "forcats", "ggplot2", "magrittr", "purrr", "rio", "rlang", "scales", "shiny", "shinydashboard", "shinyjs", "stringr", "tibble", "tidyr"]
},
"ComplexHeatmap": {
"name": "ComplexHeatmap",
"version": "2.26.0",
"sha256": "1ibphh0x0drr0hm0pk96hs8mgxp5fy6ixs8ak4imyawqdjha3s68",
"depends": ["GetoptLong", "GlobalOptions", "IRanges", "RColorBrewer", "circlize", "clue", "codetools", "colorspace", "digest", "doParallel", "foreach", "matrixStats", "png"]
},
"CompoundDb": {
"name": "CompoundDb",
"version": "1.14.0",
"sha256": "1zpb8w0ahgfhj28lgzvdaf6540x00gh98lval0i8svgjhb3mk8qj",
"depends": ["AnnotationFilter", "Biobase", "BiocGenerics", "BiocParallel", "ChemmineR", "DBI", "IRanges", "MetaboCoreUtils", "MsCoreUtils", "ProtGenerics", "RSQLite", "S4Vectors", "Spectra", "dbplyr", "dplyr", "jsonlite", "stringi", "tibble", "xml2"]
},
"ConsensusClusterPlus": {
"name": "ConsensusClusterPlus",
"version": "1.74.0",
"sha256": "1qci7bz3f99lbs1bdjb3sn49751vi1f5367x6cr1246606s72n0f",
"depends": ["ALL", "Biobase", "cluster"]
},
"CopyNumberPlots": {
"name": "CopyNumberPlots",
"version": "1.26.0",
"sha256": "0vq9jv4lq89x2yp66v075i7wv861z2ph7kzv28nswbivnlwj0763",
"depends": ["GenomeInfoDb", "GenomicRanges", "IRanges", "Rsamtools", "SummarizedExperiment", "VariantAnnotation", "cn_mops", "karyoploteR", "regioneR", "rhdf5"]
},
"Coralysis": {
"name": "Coralysis",
"version": "1.0.0",
"sha256": "15f3jl8na86lbp27al6fhzi7xpyy9hc4gqdcyzm0hjmycfzdzk4x",
"depends": ["BiocParallel", "LiblineaR", "Matrix", "RANN", "RColorBrewer", "RSpectra", "Rtsne", "S4Vectors", "SingleCellExperiment", "SparseM", "SummarizedExperiment", "aricode", "class", "cowplot", "dplyr", "flexclust", "ggplot2", "ggrastr", "ggrepel", "irlba", "matrixStats", "pheatmap", "reshape2", "scatterpie", "scran", "sparseMatrixStats", "tidyr", "umap", "uwot", "withr"]
},
"CoreGx": {
"name": "CoreGx",
"version": "2.14.0",
"sha256": "189akh4lpbp0dzgflb3nb3vi94bhmsj7qkcl597dnnzxqz00hsb2",
"depends": ["Biobase", "BiocGenerics", "BiocParallel", "BumpyMatrix", "MatrixGenerics", "MultiAssayExperiment", "S4Vectors", "SummarizedExperiment", "bench", "checkmate", "crayon", "data_table", "glue", "lsa", "piano", "rlang"]
},
"Cormotif": {
"name": "Cormotif",
"version": "1.56.0",
"sha256": "1b8lcm4l6d1zg3laj8gqagfbrc97r2zz0413xcw01h2xxqg5cv46",
"depends": ["affy", "limma"]
},
"CoverageView": {
"name": "CoverageView",
"version": "1.48.0",
"sha256": "0fnrgacv2ggfzp4i7c9x0368pviw224ldar2nijf5iwi07dhny9a",
"depends": ["GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "rtracklayer"]
},
"CrispRVariants": {
"name": "CrispRVariants",
"version": "1.38.0",
"sha256": "1msdk4g8qhkqkwi003f33pk0m6mm311ymnggdgzib106iqy1kxb5",
"depends": ["AnnotationDbi", "BiocParallel", "Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "ggplot2", "gridExtra", "reshape2"]
},
"CuratedAtlasQueryR": {
"name": "CuratedAtlasQueryR",
"version": "1.8.0",
"sha256": "1hggl8m9hj2mvhkkhs3y44ypra5bsikv4vk97d2qkq6c8q8idrm4",
"depends": ["BiocGenerics", "DBI", "HDF5Array", "S4Vectors", "Seurat", "SeuratObject", "SingleCellExperiment", "SummarizedExperiment", "assertthat", "cli", "dbplyr", "dplyr", "duckdb", "glue", "httr", "purrr", "rlang", "stringr", "tibble"]
},
"CyTOFpower": {
"name": "CyTOFpower",
"version": "1.16.0",
"sha256": "1qhli9jf5h62h40zbsxd7q3kgyjxn2afii7s1zv2yb4yz9vpcd55",
"depends": ["CytoGLMM", "DT", "SummarizedExperiment", "diffcyt", "dplyr", "ggplot2", "magrittr", "rlang", "shiny", "shinyFeedback", "shinyMatrix", "shinyjs", "tibble", "tidyr"]
},
"CytoDx": {
"name": "CytoDx",
"version": "1.30.0",
"sha256": "1jdml013lm0lyyvrgs11q6bi69zlkm8sws4fkg7y3y1i2qnakb7r",
"depends": ["doParallel", "dplyr", "flowCore", "glmnet", "rpart", "rpart_plot"]
},
"CytoGLMM": {
"name": "CytoGLMM",
"version": "1.18.0",
"sha256": "0kbcb3lzz0mdfwgk5vhbgfj55fx7k6ncq89hrkh4yxx9lsjm2k20",
"depends": ["BiocParallel", "MASS", "Matrix", "RColorBrewer", "caret", "cowplot", "doParallel", "dplyr", "factoextra", "flexmix", "ggplot2", "ggrepel", "logging", "magrittr", "mbest", "pheatmap", "rlang", "stringr", "strucchange", "tibble", "tidyr"]
},
"CytoMDS": {
"name": "CytoMDS",
"version": "1.6.0",
"sha256": "08iwzasgvgzgc4ihxqwqhj1l56ak4id719v0fgky7r40l4czrqkn",
"depends": ["Biobase", "BiocParallel", "CytoPipeline", "flowCore", "ggforce", "ggplot2", "ggrepel", "patchwork", "pracma", "reshape2", "rlang", "smacof", "transport", "withr"]
},
"CytoML": {
"name": "CytoML",
"version": "2.22.0",
"sha256": "0my3gpmkqwrh198grwn75mh0wh84p9wpd559s1wgcrzl3ra47y1b",
"depends": ["BH", "Biobase", "RBGL", "RProtoBufLib", "Rgraphviz", "Rhdf5lib", "XML", "cpp11", "cytolib", "data_table", "dplyr", "flowCore", "flowWorkspace", "ggcyto", "graph", "jsonlite", "openCyto", "tibble", "yaml"]
},
"CytoPipeline": {
"name": "CytoPipeline",
"version": "1.10.0",
"sha256": "1s9341n7az9qs6m7l3m6ks17p46smwhzs861bvnjwr6r9lmi7gpy",
"depends": ["BiocFileCache", "BiocParallel", "PeacoQC", "diagram", "flowAI", "flowCore", "ggcyto", "ggplot2", "jsonlite", "rlang", "scales", "withr"]
},
"CytoPipelineGUI": {
"name": "CytoPipelineGUI",
"version": "1.8.0",
"sha256": "05x6llzzq4911ydkb0w02j3665bf2414s14nr3r0fs2jb3y7f58w",
"depends": ["CytoPipeline", "flowCore", "ggplot2", "plotly", "shiny"]
},
"DAMEfinder": {
"name": "DAMEfinder",
"version": "1.22.0",
"sha256": "0gd23z69k0sfds09q0lpz8g3ygj24c1j02ymn8wspq2k7xgivqv6",
"depends": ["BiocGenerics", "Biostrings", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "VariantAnnotation", "bumphunter", "cowplot", "ggplot2", "limma", "plyr", "readr", "reshape2", "stringr"]
},
"DAPAR": {
"name": "DAPAR",
"version": "1.42.0",
"sha256": "13miss07m8lsnly8nj7mqi9hlwdk9075av9pfi1aahr6bhwx4r43",
"depends": ["Biobase", "DAPARdata", "MSnbase", "foreach", "highcharter"]
},
"DART": {
"name": "DART",
"version": "1.58.0",
"sha256": "0gswcf08ab1bp0vpx5m66ckd768smvav43h7q4l9plw7sg7pc7mv",
"depends": ["igraph"]
},
"DCATS": {
"name": "DCATS",
"version": "1.8.0",
"sha256": "00pc0dqf7v1pinbjw62rin9xn24j1bxxy2bf06cj1mwa8ws9fd9k",
"depends": ["MCMCpack", "aod", "e1071", "matrixStats", "robustbase"]
},
"DECIPHER": {
"name": "DECIPHER",
"version": "3.6.0",
"sha256": "0f344kiriy9q6hnji35fxhvcamb6ac40vwsw250qcj267ldj76wk",
"depends": ["Biostrings", "DBI", "IRanges", "S4Vectors", "XVector"]
},
"DEFormats": {
"name": "DEFormats",
"version": "1.38.0",
"sha256": "1xjqkv3xwslgm0ifiwcg96hqml7w6v47z8c2q4hf0dk2a9f3sljw",
"depends": ["DESeq2", "GenomicRanges", "S4Vectors", "SummarizedExperiment", "checkmate", "data_table", "edgeR"]
},
"DEGraph": {
"name": "DEGraph",
"version": "1.62.0",
"sha256": "0ynrw24wx9xhyixv17spkz34bxfx9596arhx4iafjf33pr3b39ys",
"depends": ["KEGGgraph", "NCIgraph", "RBGL", "R_methodsS3", "R_utils", "Rgraphviz", "graph", "lattice", "mvtnorm", "rrcov"]
},
"DEGreport": {
"name": "DEGreport",
"version": "1.46.0",
"sha256": "0hy8g1v296pjvvgczxkflxhza66fj4x265vljfqsa91zljwcr9lr",
"depends": ["Biobase", "BiocGenerics", "ComplexHeatmap", "ConsensusClusterPlus", "DESeq2", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "broom", "circlize", "cluster", "cowplot", "dendextend", "dplyr", "edgeR", "ggdendro", "ggplot2", "ggrepel", "knitr", "logging", "magrittr", "psych", "reshape", "rlang", "scales", "stringi", "stringr", "tibble", "tidyr"]
},
"DEGseq": {
"name": "DEGseq",
"version": "1.64.0",
"sha256": "00zsfy9fj89bkr997g9b1si1kvmi346v0xlxnzsassphc2pddfmi",
"depends": ["qvalue"]
},
"DEP": {
"name": "DEP",
"version": "1.32.0",
"sha256": "1lwj3jz7vkri1kqav7shzxh0y2qdv37f566ss4lm4ifnzihg3y43",
"depends": ["ComplexHeatmap", "DT", "MSnbase", "RColorBrewer", "SummarizedExperiment", "assertthat", "circlize", "cluster", "dplyr", "fdrtool", "ggplot2", "ggrepel", "gridExtra", "imputeLCMD", "limma", "purrr", "readr", "rmarkdown", "shiny", "shinydashboard", "tibble", "tidyr", "vsn"]
},
"DEScan2": {
"name": "DEScan2",
"version": "1.30.0",
"sha256": "0f2r8008mm1w6gwq6wi8gixwpa1fhcz7h5zarscsbkdyaqmblpqm",
"depends": ["BiocGenerics", "BiocParallel", "ChIPpeakAnno", "DelayedArray", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rcpp", "RcppArmadillo", "S4Vectors", "Seqinfo", "SummarizedExperiment", "data_table", "glue", "plyr", "rtracklayer"]
},
"DESeq2": {
"name": "DESeq2",
"version": "1.50.0",
"sha256": "18pjr7i0qnfn6h8g1laj6q0ncjmsgqg7jw8icrs35s9dzqy2nglp",
"depends": ["Biobase", "BiocGenerics", "BiocParallel", "GenomicRanges", "IRanges", "MatrixGenerics", "Rcpp", "RcppArmadillo", "S4Vectors", "SummarizedExperiment", "ggplot2", "locfit", "matrixStats"]
},
"DESpace": {
"name": "DESpace",
"version": "2.2.0",
"sha256": "1vzkzv18i04734ggdg8wrhbglwcjnn4pywambgz3956rimi8yiib",
"depends": ["BiocGenerics", "BiocParallel", "Matrix", "S4Vectors", "SpatialExperiment", "SummarizedExperiment", "assertthat", "data_table", "dplyr", "edgeR", "ggforce", "ggnewscale", "ggplot2", "limma", "patchwork", "scales", "scuttle", "sf", "spatstat_explore", "spatstat_geom", "terra"]
},
"DEWSeq": {
"name": "DEWSeq",
"version": "1.24.0",
"sha256": "194w9ky75zmkay98l41sn6129225acf2nlgd8mdvqh1w36l412sh",
"depends": ["BiocGenerics", "BiocParallel", "DESeq2", "GenomicRanges", "R_utils", "S4Vectors", "Seqinfo", "SummarizedExperiment", "data_table"]
},
"DEXSeq": {
"name": "DEXSeq",
"version": "1.56.0",
"sha256": "1pjy9yxw3w9689bdd5lc3qbxa9820vjdc5dls5jd23c90mmphsyh",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "BiocParallel", "DESeq2", "GenomicRanges", "IRanges", "RColorBrewer", "Rsamtools", "S4Vectors", "SummarizedExperiment", "biomaRt", "genefilter", "geneplotter", "hwriter", "statmod", "stringr"]
},
"DEqMS": {
"name": "DEqMS",
"version": "1.28.0",
"sha256": "0vlglhsgyz8jchfn799navmya7zdr654sad26w0690qlnyzdsqbf",
"depends": ["dplyr", "ggplot2", "limma", "matrixStats"]
},
"DEsingle": {
"name": "DEsingle",
"version": "1.30.0",
"sha256": "1kg5ak77ip6ncyvf6v1wayf00knxb824xgdlbg56bvjr26ijfnwc",
"depends": ["BiocParallel", "MASS", "Matrix", "VGAM", "bbmle", "gamlss", "maxLik", "pscl"]
},
"DEsubs": {
"name": "DEsubs",
"version": "1.36.0",
"sha256": "0hmwnx0dpfpw6m2mcgy5ymplj6azfrk21nxmjnabpg7a8i61qj56",
"depends": ["DESeq2", "EBSeq", "Matrix", "NBPSeq", "RBGL", "circlize", "edgeR", "ggplot2", "graph", "igraph", "jsonlite", "limma", "locfit", "pheatmap"]
},
"DExMA": {
"name": "DExMA",
"version": "1.18.0",
"sha256": "1khhz4mfm1fr1v125hkslhsp85r0x1z2mrni3jrnjasv6nghy2ca",
"depends": ["Biobase", "DExMAdata", "GEOquery", "RColorBrewer", "bnstruct", "impute", "limma", "pheatmap", "plyr", "scales", "snpStats", "sva", "swamp"]
},
"DFP": {
"name": "DFP",
"version": "1.68.0",
"sha256": "0mhyry6i640hs4b05q99fyh07ark0n2i0xq53432y7v2q61gzahc",
"depends": ["Biobase"]
},
"DFplyr": {
"name": "DFplyr",
"version": "1.4.0",
"sha256": "1j1wqccxavzslg9mlkb6fdrzrzf6xzdjpwmgbd30y5n0y9gldd07",
"depends": ["BiocGenerics", "S4Vectors", "dplyr", "rlang", "tidyselect"]
},
"DMCFB": {
"name": "DMCFB",
"version": "1.24.0",
"sha256": "15yr4l1r5y1cf3s28nxpmdzak0akks2z4phmcn5dmmy5j7fzv9zz",
"depends": ["BiocParallel", "GenomicRanges", "IRanges", "MASS", "S4Vectors", "SummarizedExperiment", "arm", "benchmarkme", "data_table", "fastDummies", "matrixStats", "rtracklayer", "speedglm", "tibble"]
},
"DMCHMM": {
"name": "DMCHMM",
"version": "1.32.0",
"sha256": "0s8nng5gqal4c7nn3m7z5kzggwgsji6jnzmr0mh233zpqz31kj2h",
"depends": ["BiocParallel", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment", "calibrate", "fdrtool", "multcomp", "rtracklayer"]
},
"DMRScan": {
"name": "DMRScan",
"version": "1.32.0",
"sha256": "0f4wmw9j7iwhwhbrdc8pbv5cb72yhz7w838k0xhv65sa92d9h93g",
"depends": ["GenomicRanges", "IRanges", "MASS", "Matrix", "RcppRoll", "Seqinfo", "mvtnorm"]
},
"DMRcaller": {
"name": "DMRcaller",
"version": "1.42.0",
"sha256": "0v1jylpj5phgjszy67b4q4d5ac31k4v3np27nvvlbckh7ga5bz0m",
"depends": ["BSgenome", "BiocManager", "BiocParallel", "Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "InteractionSet", "Rcpp", "RcppRoll", "Rsamtools", "S4Vectors", "Seqinfo", "betareg", "inflection", "stringr"]
},
"DMRcate": {
"name": "DMRcate",
"version": "3.6.0",
"sha256": "04hvb65i267365qgjmqbd2lbk5fxnn4r5vd37ncvbq0gn71qax7c",
"depends": ["AnnotationHub", "ExperimentHub", "GenomicRanges", "Gviz", "IRanges", "S4Vectors", "Seqinfo", "SummarizedExperiment", "biomaRt", "bsseq", "edgeR", "limma", "minfi", "missMethyl", "plyr"]
},
"DNABarcodeCompatibility": {
"name": "DNABarcodeCompatibility",
"version": "1.26.0",
"sha256": "0mjbnq9aka47qi212y4dk7vrwq9jldl68k3x06jdsl5j1xid120c",
"depends": ["BH", "Rcpp", "dplyr", "numbers", "purrr", "stringr", "tidyr"]
},
"DNABarcodes": {
"name": "DNABarcodes",
"version": "1.40.0",
"sha256": "0cvgbpimjl4wswq95d4zrxvfq9z6fl11lg70727l78xhd9vh3i4d",
"depends": ["BH", "Matrix", "Rcpp"]
},
"DNAcopy": {
"name": "DNAcopy",
"version": "1.84.0",
"sha256": "1z08nz7qawhh2rrq4sc725vm1pi86j6c4rw9fjpbivdh7wl36a6p",
"depends": []
},
"DNAcycP2": {
"name": "DNAcycP2",
"version": "1.2.0",
"sha256": "1cn4ifnc03qjfzw37ycn95bm2sc2pksyryl0v783yhvpbplfzbih",
"depends": ["basilisk", "reticulate"]
},
"DNAfusion": {
"name": "DNAfusion",
"version": "1.12.0",
"sha256": "14hf9fjr0fn8r5k853wc0fcfy6xjrpiz6269l058q9fqanwwml90",
"depends": ["BiocBaseUtils", "BiocGenerics", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "TxDb_Hsapiens_UCSC_hg38_knownGene"]
},
"DNAshapeR": {
"name": "DNAshapeR",
"version": "1.38.0",
"sha256": "0069dcaa6dyjqclmdcmfwp16nl7mbxcdvl6kqii6xx5q6ha4khyj",
"depends": ["Biostrings", "GenomicRanges", "Rcpp", "fields"]
},
"DNEA": {
"name": "DNEA",
"version": "1.0.0",
"sha256": "0fb16yraaxnp2ap4wk68vkr9ac3cgy37xjmkrsmwrjxiwfrmvmjm",
"depends": ["BiocParallel", "Matrix", "SummarizedExperiment", "dplyr", "gdata", "glasso", "igraph", "janitor", "netgsa", "stringr"]
},
"DOSE": {
"name": "DOSE",
"version": "4.4.0",
"sha256": "0d6lwlkinjf66snfxg3j85m12vw00nmc507px871bi9p4xq7zjld",
"depends": ["AnnotationDbi", "BiocParallel", "GOSemSim", "fgsea", "ggplot2", "qvalue", "reshape2", "yulab_utils"]
},
"DOtools": {
"name": "DOtools",
"version": "1.0.0",
"sha256": "1g78ljyr71x1v9srnz9m7v4gkc1dbyqgsbkaqfpdmvs5ybwxrkg3",
"depends": ["DESeq2", "DropletUtils", "Matrix", "S4Vectors", "SCpubr", "Seurat", "SeuratObject", "SingleCellExperiment", "basilisk", "cli", "cowplot", "curl", "dplyr", "enrichR", "ggalluvial", "ggcorrplot", "ggiraphExtra", "ggplot2", "ggpubr", "ggtext", "magrittr", "openxlsx", "progress", "purrr", "reshape2", "reticulate", "rlang", "rstatix", "scCustomize", "scDblFinder", "scales", "tibble", "tidyr", "tidyverse", "zellkonverter"]
},
"DRIMSeq": {
"name": "DRIMSeq",
"version": "1.38.0",
"sha256": "0ga00qvrlccawq9nl0vdpsd9gbqx1xcafdxflp7vpi85s04bmg48",
"depends": ["BiocGenerics", "BiocParallel", "GenomicRanges", "IRanges", "MASS", "S4Vectors", "edgeR", "ggplot2", "limma", "reshape2"]
},
"DSS": {
"name": "DSS",
"version": "2.58.0",
"sha256": "0k9vw11xxdi1d2qjp7z9kwzhcqb2d80wi76xvmqnmrl810ni07a5",
"depends": ["Biobase", "BiocParallel", "bsseq"]
},
"DTA": {
"name": "DTA",
"version": "2.56.0",
"sha256": "0xvwa03kivly6617l4lbwz78xzhz5qn7f05pn9a1qxgg2fxxw2mf",
"depends": ["LSD", "scatterplot3d"]
},
"DaMiRseq": {
"name": "DaMiRseq",
"version": "2.22.0",
"sha256": "1gm0wd304gd6xp339z6977yx0iwn3zqqf249hw882yi059xj295s",
"depends": ["DESeq2", "EDASeq", "FSelector", "FactoMineR", "Hmisc", "MASS", "RColorBrewer", "RSNNS", "SummarizedExperiment", "arm", "caret", "corrplot", "e1071", "edgeR", "ggplot2", "ineq", "kknn", "limma", "lubridate", "pheatmap", "pls", "plsVarSel", "plyr", "randomForest", "reshape2", "sva"]
},
"Damsel": {
"name": "Damsel",
"version": "1.6.0",
"sha256": "08d2kpqrvs00l6j4dpibflzy55wpsfdqrxpnbb84dk6x85j0cr0r",
"depends": ["AnnotationDbi", "Biostrings", "ComplexHeatmap", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "Rsamtools", "Rsubread", "dplyr", "edgeR", "ggbio", "ggplot2", "goseq", "magrittr", "patchwork", "plyranges", "reshape2", "rlang", "stringr", "tidyr"]
},
"DeMAND": {
"name": "DeMAND",
"version": "1.40.0",
"sha256": "08pkxdhxzw2d4fx1r6h8b10bwkhhaipdr5fy6c5vh89z1lbjmxcg",
"depends": ["KernSmooth"]
},
"DeMixT": {
"name": "DeMixT",
"version": "1.26.0",
"sha256": "0nqalk74r8k1sr1wc3n60dp19crv8arp3xczv371c29wvhgfmqn8",
"depends": ["DSS", "KernSmooth", "Rcpp", "SummarizedExperiment", "base64enc", "dendextend", "ggplot2", "knitr", "matrixStats", "matrixcalc", "psych", "rmarkdown", "sva", "truncdist"]
},
"DeconvoBuddies": {
"name": "DeconvoBuddies",
"version": "1.2.0",
"sha256": "1q6zcp83yqnlifasz8dp37f9a6fh97fxlfjydm67gsqc7vcsiv7d",
"depends": ["AnnotationHub", "BiocFileCache", "DelayedMatrixStats", "ExperimentHub", "MatrixGenerics", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "dplyr", "ggplot2", "purrr", "rafalib", "reshape2", "scran", "spatialLIBD", "stringr", "tibble"]
},
"DeeDeeExperiment": {
"name": "DeeDeeExperiment",
"version": "1.0.0",
"sha256": "05sycr3kv44w3x66s280vp1nz4i8pxflxqrw1lwffg087ssbyp23",
"depends": ["DESeq2", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "cli", "edgeR", "limma"]
},
"DeepPINCS": {
"name": "DeepPINCS",
"version": "1.18.0",
"sha256": "0p9hiqhv2kr44jw61bsg15ymxqzdxkq5vvywsgw2418428d3j2gp",
"depends": ["CatEncoders", "PRROC", "keras", "matlab", "purrr", "rcdk", "reticulate", "stringdist", "tensorflow", "tokenizers", "ttgsea", "webchem"]
},
"DeepTarget": {
"name": "DeepTarget",
"version": "1.4.0",
"sha256": "1fyr7y6bv4bgx6hsjac0zjh8h7i14qvxf6vhwnaj0kc5nprszzbn",
"depends": ["BiocParallel", "depmap", "dplyr", "fgsea", "ggplot2", "ggpubr", "pROC", "readr", "stringr"]
},
"DegCre": {
"name": "DegCre",
"version": "1.6.0",
"sha256": "056716y8ychdbac6mvyp99n3ak5afnxgyksa1b524jzwipc3w0k9",
"depends": ["BiocGenerics", "BiocParallel", "GenomicRanges", "IRanges", "InteractionSet", "S4Vectors", "Seqinfo", "TxDb_Hsapiens_UCSC_hg38_knownGene", "org_Hs_eg_db", "plotgardener", "qvalue"]
},
"DegNorm": {
"name": "DegNorm",
"version": "1.20.0",
"sha256": "1737fdfd5i80qh4dp21z5pq4d3xfzl79m59qwhmz40pljx98bl88",
"depends": ["GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rcpp", "RcppArmadillo", "Rsamtools", "S4Vectors", "data_table", "doParallel", "foreach", "ggplot2", "heatmaply", "plotly", "plyr", "txdbmaker", "viridis"]
},
"DelayedArray": {
"name": "DelayedArray",
"version": "0.36.0",
"sha256": "1x5qhgnwf89hmra4lvs0sa5mqz9rm45bmw4q1469zw1brazcp3gv",
"depends": ["BiocGenerics", "IRanges", "Matrix", "MatrixGenerics", "S4Arrays", "S4Vectors", "SparseArray"]
},
"DelayedDataFrame": {
"name": "DelayedDataFrame",
"version": "1.26.0",
"sha256": "1yqvpkps2kcfdaadnh52rmhqa0z37579i9f1ff86xablmzi9znfg",
"depends": ["BiocGenerics", "DelayedArray", "S4Vectors"]
},
"DelayedMatrixStats": {
"name": "DelayedMatrixStats",
"version": "1.32.0",
"sha256": "0ygp9p8lm19421ybqsrp0xz396cpf7b2vwk6hmrr5gxhxqqxyba5",
"depends": ["DelayedArray", "IRanges", "Matrix", "MatrixGenerics", "S4Vectors", "SparseArray", "sparseMatrixStats"]
},
"DelayedRandomArray": {
"name": "DelayedRandomArray",
"version": "1.18.0",
"sha256": "039m4n7vd56vgnf1nxfga3f7f4sd533qy3wjb77ly9pfs2jnb546",
"depends": ["BH", "DelayedArray", "Rcpp", "SparseArray", "dqrng"]
},
"DelayedTensor": {
"name": "DelayedTensor",
"version": "1.16.0",
"sha256": "1wzjdmqmrgakkzsdjj7qpd9r6i07skq3l7hxkj3qlrfxp91rgad2",
"depends": ["BiocSingular", "DelayedArray", "DelayedRandomArray", "HDF5Array", "Matrix", "S4Arrays", "SparseArray", "einsum", "irlba", "rTensor"]
},
"DepInfeR": {
"name": "DepInfeR",
"version": "1.14.0",
"sha256": "0pgxxlsa72h57592yrhz5n4i2332mphrjd32019vhiisligcadzr",
"depends": ["BiocParallel", "glmnet", "matrixStats"]
},
"DepecheR": {
"name": "DepecheR",
"version": "1.26.0",
"sha256": "063jx19fs7gx84ivsmfs47lw5i79037v4c31k50jfzbxnwb1bnnc",
"depends": ["ClusterR", "FNN", "MASS", "Rcpp", "RcppEigen", "beanplot", "collapse", "doSNOW", "dplyr", "foreach", "ggplot2", "gmodels", "gplots", "matrixStats", "mixOmics", "moments", "reshape2", "robustbase", "viridis"]
},
"DiffBind": {
"name": "DiffBind",
"version": "3.20.0",
"sha256": "1y2i85mcs4wgkl10ykmfhvikapb3kql7v4jwli99jlvi897xwjsq",
"depends": ["BiocParallel", "DESeq2", "GenomicAlignments", "GenomicRanges", "GreyListChIP", "IRanges", "RColorBrewer", "Rcpp", "Rhtslib", "Rsamtools", "S4Vectors", "SummarizedExperiment", "amap", "apeglm", "ashr", "dplyr", "ggplot2", "ggrepel", "gplots", "lattice", "limma", "locfit", "systemPipeR"]
},
"DiffLogo": {
"name": "DiffLogo",
"version": "2.34.0",
"sha256": "08wgvbjqwkrqdmh6xiyr1slvq4yasl70g6r8xlw11j1ipqrr37g4",
"depends": ["cba"]
},
"DifferentialRegulation": {
"name": "DifferentialRegulation",
"version": "2.8.0",
"sha256": "09vbnd9as1925m9h2dhxxg8zwrqnjpql1qvkdx7c7rqm9wfhm6bx",
"depends": ["BANDITS", "MASS", "Matrix", "Rcpp", "RcppArmadillo", "SingleCellExperiment", "SummarizedExperiment", "data_table", "doParallel", "doRNG", "foreach", "ggplot2", "gridExtra", "tximport"]
},
"Dino": {
"name": "Dino",
"version": "1.16.0",
"sha256": "1miqqyf792ijrc2b7rbwgl7yfbyng68wylip88230yik8jmdhdvp",
"depends": ["BiocParallel", "BiocSingular", "Matrix", "S4Vectors", "Seurat", "SingleCellExperiment", "SummarizedExperiment", "matrixStats", "scran"]
},
"DirichletMultinomial": {
"name": "DirichletMultinomial",
"version": "1.52.0",
"sha256": "0mr7b6xvi841k2whmp1qwh6nys7fkd2d5m0zzsp5m76lq24hhjdn",
"depends": ["BiocGenerics", "IRanges", "S4Vectors"]
},
"DiscoRhythm": {
"name": "DiscoRhythm",
"version": "1.26.0",
"sha256": "0dgsfnw1zvf7m3z20wdakpv64yilq47lyj8cklkqs4kg2ks38cjc",
"depends": ["BiocGenerics", "BiocStyle", "DT", "MetaCycle", "S4Vectors", "SummarizedExperiment", "UpSetR", "VennDiagram", "broom", "data_table", "dplyr", "ggExtra", "ggplot2", "gridExtra", "heatmaply", "kableExtra", "knitr", "magick", "matrixStats", "matrixTests", "plotly", "reshape2", "rmarkdown", "shiny", "shinyBS", "shinycssloaders", "shinydashboard", "shinyjs", "viridis", "zip"]
},
"DominoEffect": {
"name": "DominoEffect",
"version": "1.30.0",
"sha256": "1i59118bqk25jqkjkg6ddc8xyls9dd2r15piw7a6rgf8d2hv395s",
"depends": ["AnnotationDbi", "Biostrings", "GenomicRanges", "IRanges", "Seqinfo", "SummarizedExperiment", "VariantAnnotation", "biomaRt", "data_table", "pwalign"]
},
"Doscheda": {
"name": "Doscheda",
"version": "1.32.0",
"sha256": "0dllqkqh9760hl9qjwqdz6npsprp48zw5rb4didj7ff13yl4nzbn",
"depends": ["DT", "affy", "calibrate", "corrgram", "drc", "ggplot2", "gridExtra", "httr", "jsonlite", "limma", "matrixStats", "prodlim", "readxl", "reshape2", "shiny", "shinydashboard", "stringr", "vsn"]
},
"DriverNet": {
"name": "DriverNet",
"version": "1.50.0",
"sha256": "1sy3jzbg2hh83s1w6qm9mi4qk3ppa5xzc8h59ylm0pr42mnhmfwg",
"depends": []
},
"DropletUtils": {
"name": "DropletUtils",
"version": "1.30.0",
"sha256": "18k2jlz9yk2fayk01q165cp0wr1sb3hq73q6fp0w3w669ykfz0a5",
"depends": ["BH", "BiocGenerics", "BiocParallel", "DelayedArray", "DelayedMatrixStats", "GenomicRanges", "HDF5Array", "IRanges", "Matrix", "R_utils", "Rcpp", "Rhdf5lib", "S4Vectors", "SingleCellExperiment", "SparseArray", "SummarizedExperiment", "assorthead", "beachmat", "dqrng", "edgeR", "rhdf5", "scuttle"]
},
"DrugVsDisease": {
"name": "DrugVsDisease",
"version": "2.52.0",
"sha256": "1dgj492s26sbmxs8ac36cv6w9g6d4ay7p56hy3d5smmk21r5fsj7",
"depends": ["ArrayExpress", "BiocGenerics", "DrugVsDiseasedata", "GEOquery", "RUnit", "affy", "annotate", "biomaRt", "cMap2data", "hgu133a2_db", "hgu133a_db", "hgu133plus2_db", "limma", "qvalue", "xtable"]
},
"DspikeIn": {
"name": "DspikeIn",
"version": "1.0.0",
"sha256": "0rdvkj2ncsvzj5zm2msq02aakx4g9yzsc63v873jk15y2ywncmsm",
"depends": ["Biostrings", "DECIPHER", "DESeq2", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "TreeSummarizedExperiment", "ape", "data_table", "dplyr", "edgeR", "flextable", "ggalluvial", "ggnewscale", "ggplot2", "ggpubr", "ggraph", "ggrepel", "ggridges", "ggstar", "ggtree", "ggtreeExtra", "igraph", "limma", "matrixStats", "microbiome", "msa", "officer", "patchwork", "phangorn", "phyloseq", "randomForest", "reshape2", "rlang", "scales", "tibble", "tidyr", "xml2"]
},
"Dune": {
"name": "Dune",
"version": "1.22.0",
"sha256": "17vqzbl0zvmg1ndv99812hqmr6m8s14mw8bsa0mlv2piqh3iz5hs",
"depends": ["BiocParallel", "RColorBrewer", "SummarizedExperiment", "aricode", "dplyr", "gganimate", "ggplot2", "magrittr", "purrr", "tidyr"]
},
"DuplexDiscovereR": {
"name": "DuplexDiscovereR",
"version": "1.4.0",
"sha256": "101ppsi4inl7c7np8aqchdr4kabqxpyvmr5g14akmyp5hdqy7jgc",
"depends": ["Biostrings", "GenomicAlignments", "GenomicRanges", "Gviz", "InteractionSet", "dplyr", "ggsci", "igraph", "purrr", "rlang", "rtracklayer", "scales", "stringr", "tibble", "tidyr", "vctrs"]
},
"DynDoc": {
"name": "DynDoc",
"version": "1.88.0",
"sha256": "09nf883xlqwjisyab3vryvrv33z7zllpqi1zppyndxygm524avbp",
"depends": []
},
"EBImage": {
"name": "EBImage",
"version": "4.52.0",
"sha256": "171c233hqpssqsf2j0ifmabnxg5q0ysdvz8s7wrld0xbxls1fyj2",
"depends": ["BiocGenerics", "RCurl", "abind", "fftwtools", "htmltools", "htmlwidgets", "jpeg", "locfit", "png", "tiff"]
},
"EBSEA": {
"name": "EBSEA",
"version": "1.38.0",
"sha256": "1qcflilq5abcymhdpzypdqs5y6r0wa4wbv4g17m4z22f0vag6qy9",
"depends": ["DESeq2", "EmpiricalBrownsMethod"]
},
"EBSeq": {
"name": "EBSeq",
"version": "2.8.0",
"sha256": "1d9hvmh7dx8alf11xh3pc7il0jfr5jsbqjn90rrarsmslbkys7la",
"depends": ["BH", "Rcpp", "RcppEigen", "blockmodeling", "gplots", "testthat"]
},
"EBarrays": {
"name": "EBarrays",
"version": "2.74.0",
"sha256": "12x2c3qvybiick7pk5cl9i3ndg1vgwkv08i6dgd8gqf83dvwylk1",
"depends": ["Biobase", "cluster", "lattice"]
},
"EBcoexpress": {
"name": "EBcoexpress",
"version": "1.54.0",
"sha256": "08smy75js91pfwl8vb6s97g8j7i7g5j8ycidfxcgdnf1i5nylkmh",
"depends": ["EBarrays", "mclust", "minqa"]
},
"EDASeq": {
"name": "EDASeq",
"version": "2.44.0",
"sha256": "1j8q66dba91pdc39khnfq4fdwky9w5lrvps5adl7xcqv73ryw59p",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "BiocManager", "Biostrings", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "ShortRead", "aroma_light", "biomaRt"]
},
"EDIRquery": {
"name": "EDIRquery",
"version": "1.10.0",
"sha256": "1lj0h2hzfmil3zvsn1dr7k70pc4jlzvnn5k0f8pf6n9g1am2rrbn",
"depends": ["GenomicRanges", "InteractionSet", "readr", "tibble", "tictoc"]
},
"EGAD": {
"name": "EGAD",
"version": "1.38.0",
"sha256": "13xw27sjc4v0gc9ln7qfa8swwd3jqr0032nknfh1yr3zk8sz4sy8",
"depends": ["Biobase", "GEOquery", "MASS", "RColorBrewer", "RCurl", "gplots", "igraph", "impute", "limma", "plyr", "zoo"]
},
"EGSEA": {
"name": "EGSEA",
"version": "1.38.0",
"sha256": "1kmhld8fnd6cwxd0k7i9mzh8hq22s2n6n4gqg8nwpvgvw2i2h2v3",
"depends": ["AnnotationDbi", "Biobase", "DT", "EGSEAdata", "GSVA", "HTMLUtils", "PADOG", "RColorBrewer", "edgeR", "gage", "ggplot2", "globaltest", "gplots", "htmlwidgets", "hwriter", "limma", "metap", "org_Hs_eg_db", "org_Mm_eg_db", "org_Rn_eg_db", "pathview", "plotly", "safe", "stringi", "topGO"]
},
"ELMER": {
"name": "ELMER",
"version": "2.33.1",
"sha256": "1ajwq8amzif2sxyz11a8axbd4jibp3f7pzrcl9f9zbwz8l5h6jmx",
"depends": ["ComplexHeatmap", "DelayedArray", "ELMER_data", "GenomicFeatures", "GenomicRanges", "Gviz", "IRanges", "Matrix", "MultiAssayExperiment", "S4Vectors", "Seqinfo", "SummarizedExperiment", "TCGAbiolinks", "biomaRt", "circlize", "doParallel", "downloader", "dplyr", "ggplot2", "ggpubr", "ggrepel", "gridExtra", "lattice", "magrittr", "plotly", "plyr", "progress", "purrr", "readr", "reshape", "reshape2", "rmarkdown", "rtracklayer", "rvest", "scales", "stringr", "tibble", "tidyr", "xml2"]
},
"ELViS": {
"name": "ELViS",
"version": "1.2.0",
"sha256": "0fj5x8iz4qp29rffh14cz71dn0kzw2rhvdxgr6l92ixa29l2bsnz",
"depends": ["BiocGenerics", "ComplexHeatmap", "GenomicFeatures", "GenomicRanges", "IRanges", "circlize", "data_table", "dplyr", "ggplot2", "glue", "igraph", "magrittr", "memoise", "patchwork", "reticulate", "scales", "segclust2d", "stringr", "txdbmaker", "uuid", "zoo"]
},
"EMDomics": {
"name": "EMDomics",
"version": "2.40.0",
"sha256": "16zfssk8f2id1vaklgvrk986jr0zzqzxacm439x29lnn2fkh4fkr",
"depends": ["BiocParallel", "CDFt", "emdist", "ggplot2", "matrixStats", "preprocessCore"]
},
"ENmix": {
"name": "ENmix",
"version": "1.46.0",
"sha256": "1zv7b8yfzn3mazfg2hyc20xpi8ayd0xwxz5wnd4ywjmnfagwqjwb",
"depends": ["AnnotationHub", "Biobase", "ExperimentHub", "IRanges", "RPMM", "S4Vectors", "SummarizedExperiment", "doParallel", "dynamicTreeCut", "foreach", "genefilter", "geneplotter", "gplots", "gtools", "illuminaio", "impute", "irlba", "matrixStats", "minfi", "quadprog"]
},
"ERSSA": {
"name": "ERSSA",
"version": "1.28.0",
"sha256": "1bj2djhvawy5kg059syg3sbwdjl092kf5vaxjh1zg204nn760fx0",
"depends": ["BiocParallel", "DESeq2", "RColorBrewer", "apeglm", "edgeR", "ggplot2", "plyr"]
},
"EWCE": {
"name": "EWCE",
"version": "1.18.0",
"sha256": "0i476appzbnv6gy8jhpwnfaq6dqhfpny56m7w2l7a2j6qgyifmva",
"depends": ["BiocParallel", "DelayedArray", "HGNChelper", "Matrix", "RNOmni", "SingleCellExperiment", "SummarizedExperiment", "data_table", "dplyr", "ewceData", "ggplot2", "limma", "orthogene", "reshape2", "stringr"]
},
"EasyCellType": {
"name": "EasyCellType",
"version": "1.12.0",
"sha256": "0c4x827v95dz9h3b632f3si3nz5fjqawzzhfkh9ralfhqfzpm9kq",
"depends": ["AnnotationDbi", "BiocStyle", "clusterProfiler", "dplyr", "forcats", "ggplot2", "magrittr", "org_Hs_eg_db", "org_Mm_eg_db", "rlang", "vctrs"]
},
"EmpiricalBrownsMethod": {
"name": "EmpiricalBrownsMethod",
"version": "1.38.0",
"sha256": "0ff4sqgg3j8m74li69p7b9rkckwfgkr2igy5k3iz485qq2g8iryg",
"depends": []
},
"EnMCB": {
"name": "EnMCB",
"version": "1.22.0",
"sha256": "1fnz58vc1j7zacwj12f045sachfbdy6apkd8b036gnqrdkf49c88",
"depends": ["BiocFileCache", "Matrix", "boot", "e1071", "ggplot2", "glmnet", "igraph", "mboost", "rms", "survival", "survivalROC", "survivalsvm"]
},
"EnrichDO": {
"name": "EnrichDO",
"version": "1.4.0",
"sha256": "1h36v3m4all9n05s9mwcidlz27rxawibdl1kanyf2s89a3h0jj9d",
"depends": ["BiocGenerics", "Rgraphviz", "S4Vectors", "dplyr", "ggplot2", "graph", "hash", "magrittr", "pheatmap", "purrr", "tidyr"]
},
"EnrichedHeatmap": {
"name": "EnrichedHeatmap",
"version": "1.40.0",
"sha256": "1pz5czpy4dhjxaamz7n7zvxz3s48jyk3rhy90pqil41i8zlql4hr",
"depends": ["ComplexHeatmap", "GenomicRanges", "GetoptLong", "IRanges", "Rcpp", "circlize", "locfit", "matrixStats"]
},
"EnrichmentBrowser": {
"name": "EnrichmentBrowser",
"version": "2.40.0",
"sha256": "0qvp3j5fxxy97v29qj8ywgq0s2x1s7n222rmhq2lyb8vxyc7i0rd",
"depends": ["AnnotationDbi", "BiocFileCache", "BiocManager", "GO_db", "GSEABase", "KEGGREST", "KEGGgraph", "Rgraphviz", "S4Vectors", "SPIA", "SummarizedExperiment", "edgeR", "graph", "graphite", "hwriter", "limma", "pathview", "safe"]
},
"EpiCompare": {
"name": "EpiCompare",
"version": "1.14.0",
"sha256": "1ca9vzlwpyiqv3y3f9j6ch0wv2545wiza54dp2iyn8cfhph8s67q",
"depends": ["AnnotationHub", "BiocGenerics", "ChIPseeker", "GenomeInfoDb", "GenomicRanges", "IRanges", "Seqinfo", "data_table", "downloadthis", "genomation", "ggplot2", "htmltools", "plotly", "reshape2", "rmarkdown", "rtracklayer", "stringr"]
},
"EpiDISH": {
"name": "EpiDISH",
"version": "2.26.0",
"sha256": "15p5qshjbas5fb3x2sdwpcxd9ps91y4089jjy8c12q7sail4c54q",
"depends": ["MASS", "Matrix", "e1071", "locfdr", "matrixStats", "quadprog", "stringr"]
},
"EpiMix": {
"name": "EpiMix",
"version": "1.12.0",
"sha256": "1swwxf3hq3wcn05q1yxy5djby7jn35plylwnli27rrfqqrvi05h5",
"depends": ["AnnotationDbi", "AnnotationHub", "Biobase", "ELMER_data", "EpiMix_data", "ExperimentHub", "GenomicFeatures", "GenomicRanges", "IRanges", "RColorBrewer", "RCurl", "RPMM", "R_matlab", "S4Vectors", "Seqinfo", "SummarizedExperiment", "biomaRt", "data_table", "doParallel", "doSNOW", "downloader", "dplyr", "foreach", "ggplot2", "impute", "limma", "plyr", "progress", "rlang", "tibble", "tidyr"]
},
"EpiTxDb": {
"name": "EpiTxDb",
"version": "1.22.0",
"sha256": "185m3wvqji8qw3bc05cmpzki1df5i8kr7hw15dnpnpich9i0mi3r",
"depends": ["AnnotationDbi", "BiocFileCache", "BiocGenerics", "Biostrings", "DBI", "GenomicFeatures", "GenomicRanges", "IRanges", "Modstrings", "RSQLite", "S4Vectors", "Seqinfo", "curl", "httr", "rex", "tRNAdbImport", "txdbmaker", "xml2"]
},
"EpipwR": {
"name": "EpipwR",
"version": "1.4.0",
"sha256": "11rwbvskmx75cwbmq7c5s10vjwhgj2ibwy8g0zqvwlmsa2dynd4w",
"depends": ["EpipwR_data", "ExperimentHub", "ggplot2"]
},
"EventPointer": {
"name": "EventPointer",
"version": "3.18.0",
"sha256": "0zf4dc8pa5b93il4qpnbc6g9c7ir0rqhxa8w1vhghdwqswjb74ig",
"depends": ["BSgenome", "Biostrings", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "MASS", "Matrix", "RBGL", "S4Vectors", "SGSeq", "SummarizedExperiment", "abind", "affxparser", "cobs", "doParallel", "fgsea", "foreach", "glmnet", "graph", "igraph", "iterators", "limma", "lpSolve", "matrixStats", "nnls", "poibin", "prodlim", "qvalue", "rhdf5", "speedglm", "stringr", "tximport"]
},
"ExCluster": {
"name": "ExCluster",
"version": "1.28.0",
"sha256": "1103xdpcv59nsb2wk5qg9dmw6x6nfp18b9d3c3dsmb5bbl4hyy57",
"depends": ["GenomicRanges", "IRanges", "Rsubread", "matrixStats", "rtracklayer"]
},
"ExiMiR": {
"name": "ExiMiR",
"version": "2.52.0",
"sha256": "12075cp6py3ns59gyj2snrp6yr7v0zxwnvmnzfprynixhiiqzw2z",
"depends": ["Biobase", "affy", "affyio", "limma", "preprocessCore"]
},
"ExperimentHub": {
"name": "ExperimentHub",
"version": "3.0.0",
"sha256": "1ghz228x3ijr003zldqh9b473wn8cc518w6iwzx03sgrxaq2s177",
"depends": ["AnnotationHub", "BiocFileCache", "BiocGenerics", "BiocManager", "S4Vectors", "rappdirs"]
},
"ExperimentHubData": {
"name": "ExperimentHubData",
"version": "1.36.0",
"sha256": "1bjqvlhmzznsvji8k5d24wqhkpr8bhafjhmsqbnd8m58k3nrx919",
"depends": ["AnnotationHubData", "BiocGenerics", "BiocManager", "DBI", "ExperimentHub", "S4Vectors", "curl", "httr"]
},
"ExperimentSubset": {
"name": "ExperimentSubset",
"version": "1.20.0",
"sha256": "1yw4ci223s5cc0kwz6frfp3wngws48bghxwx6r761n03wsxs4g2q",
"depends": ["Matrix", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "TreeSummarizedExperiment"]
},
"ExploreModelMatrix": {
"name": "ExploreModelMatrix",
"version": "1.22.0",
"sha256": "0mbgsq3kb5wz9dz75hq4bka69in08kcyii8hqpga09948ffgm03l",
"depends": ["DT", "MASS", "S4Vectors", "cowplot", "dplyr", "ggplot2", "limma", "magrittr", "rintrojs", "rlang", "scales", "shiny", "shinydashboard", "shinyjs", "tibble", "tidyr"]
},
"ExpressionAtlas": {
"name": "ExpressionAtlas",
"version": "2.2.0",
"sha256": "0zksi7r2r98kid5w785spshnw8pgw8za3snag9k5qmycryhwvwfr",
"depends": ["Biobase", "BiocStyle", "RCurl", "S4Vectors", "SummarizedExperiment", "XML", "httr", "jsonlite", "limma", "xml2"]
},
"FEAST": {
"name": "FEAST",
"version": "1.18.0",
"sha256": "0yraanabz295kj3xlcllfscb7lvjk8z95grym1y3zlvgjfv3q65i",
"depends": ["BiocParallel", "SC3", "SingleCellExperiment", "SummarizedExperiment", "TSCAN", "irlba", "matrixStats", "mclust"]
},
"FELLA": {
"name": "FELLA",
"version": "1.30.0",
"sha256": "09ahamrbzai0pw7pkd9dxcray8ziqp4x7vl7makkpig1x9vsq10n",
"depends": ["KEGGREST", "Matrix", "igraph", "plyr"]
},
"FGNet": {
"name": "FGNet",
"version": "3.44.0",
"sha256": "1g9r62pp4qcrmfc3g222p5rw8afap6m54k05j6bbasr8sx69m18g",
"depends": ["RColorBrewer", "R_utils", "XML", "hwriter", "igraph", "plotrix", "png", "reshape2"]
},
"FISHalyseR": {
"name": "FISHalyseR",
"version": "1.44.0",
"sha256": "016agx3dci46srbb82lnyk42cxxia0in06hk9f9s6gai0rd7rqxn",
"depends": ["EBImage", "abind"]
},
"FLAMES": {
"name": "FLAMES",
"version": "2.4.0",
"sha256": "0n0a8zlydmd03pd2ymdf5nafsc09y8glfgr31dag37y93xc7a9zs",
"depends": ["BiocGenerics", "BiocParallel", "Biostrings", "ComplexHeatmap", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Matrix", "MatrixGenerics", "RColorBrewer", "R_utils", "Rcpp", "Rhtslib", "Rsamtools", "S4Arrays", "S4Vectors", "Seqinfo", "ShortRead", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "abind", "bambu", "basilisk", "circlize", "cli", "cowplot", "crew", "dplyr", "ggbio", "ggplot2", "gridExtra", "igraph", "jsonlite", "magick", "magrittr", "readr", "reticulate", "rtracklayer", "scater", "scatterpie", "scran", "scuttle", "stringr", "testthat", "tibble", "tidyr", "tidyselect", "withr"]
},
"FRASER": {
"name": "FRASER",
"version": "2.6.0",
"sha256": "1h9j04q0b956kikwlwzfgn6amd4wf56ybqim3r6vikmhqacm94l7",
"depends": ["AnnotationDbi", "BBmisc", "BSgenome", "Biobase", "BiocGenerics", "BiocParallel", "DelayedArray", "DelayedMatrixStats", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "HDF5Array", "IRanges", "OUTRIDER", "PRROC", "RColorBrewer", "RMTstat", "R_utils", "Rcpp", "RcppArmadillo", "Rsamtools", "Rsubread", "S4Vectors", "SummarizedExperiment", "VGAM", "biomaRt", "cowplot", "data_table", "extraDistr", "generics", "ggplot2", "ggrepel", "matrixStats", "pcaMethods", "pheatmap", "plotly", "pracma", "rhdf5", "tibble"]
},
"FRGEpistasis": {
"name": "FRGEpistasis",
"version": "1.46.0",
"sha256": "18zjy8v0bjh0i9chmy390g70v33ni6flj1vfdanh3vrfbfk2m341",
"depends": ["MASS", "fda"]
},
"FamAgg": {
"name": "FamAgg",
"version": "1.38.0",
"sha256": "0i6h2clwylxnxc4dwqggpq7y3cncp9qp4n7l8ypkl20kaq3s676a",
"depends": ["BiocGenerics", "Matrix", "gap", "igraph", "kinship2", "survey"]
},
"FastqCleaner": {
"name": "FastqCleaner",
"version": "1.28.0",
"sha256": "1fdd89x18k00in855f11h6fj4m5kwkipanbf8zmrrnwkawm62cc1",
"depends": ["Biostrings", "DT", "IRanges", "Rcpp", "S4Vectors", "ShortRead", "htmltools", "shiny", "shinyBS"]
},
"FeatSeekR": {
"name": "FeatSeekR",
"version": "1.10.0",
"sha256": "0akq90c0hb5gbl35lnql3crr00k3dmigs65phs9c1i22wa2qqlqr",
"depends": ["MASS", "SummarizedExperiment", "pheatmap", "pracma"]
},
"FilterFFPE": {
"name": "FilterFFPE",
"version": "1.20.0",
"sha256": "11b46qwg6sq7q7vnq18pcnfpnjavs97azmg0034a214gg7f9kila",
"depends": ["GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "doParallel", "foreach"]
},
"FindIT2": {
"name": "FindIT2",
"version": "1.16.0",
"sha256": "0ld9xvy1r8a27alf4w368x9yvmwx8fy43yv0izp39y1x1jpvkqj8",
"depends": ["BiocGenerics", "BiocParallel", "GenomicFeatures", "GenomicRanges", "IRanges", "MultiAssayExperiment", "S4Vectors", "Seqinfo", "SummarizedExperiment", "dplyr", "ggplot2", "ggrepel", "glmnet", "patchwork", "progress", "purrr", "qvalue", "rlang", "rtracklayer", "stringr", "tibble", "tidyr", "withr"]
},
"FinfoMDS": {
"name": "FinfoMDS",
"version": "1.0.0",
"sha256": "0gr2vm0d0qkk6y8rdvyicf468d317ffdyzq7fdxcn5iv0dgci9wq",
"depends": ["phyloseq"]
},
"FitHiC": {
"name": "FitHiC",
"version": "1.36.0",
"sha256": "1s454gpagdcj4gz5nbgvip3nw1kpp95bi6db9y302yrmpwds8vpq",
"depends": ["Rcpp", "data_table", "fdrtool"]
},
"FlowSOM": {
"name": "FlowSOM",
"version": "2.18.0",
"sha256": "09a3s5aqp9kfvckf2mw8lj0q74b3wmbg1qnphrggdcilhhh107di",
"depends": ["BiocGenerics", "ConsensusClusterPlus", "Rtsne", "XML", "colorRamps", "dplyr", "flowCore", "ggforce", "ggnewscale", "ggplot2", "ggpubr", "igraph", "magrittr", "rlang", "tidyr"]
},
"FuseSOM": {
"name": "FuseSOM",
"version": "1.12.0",
"sha256": "1wavm6njapw7p5jvalghg981wgbgfrqfqhx6aqyvv2r5q14rkkwp",
"depends": ["FCPS", "Rcpp", "S4Vectors", "SummarizedExperiment", "analogue", "cluster", "coop", "diptest", "fastcluster", "fpc", "ggplot2", "ggplotify", "ggpubr", "pheatmap", "proxy", "psych", "stringr"]
},
"G4SNVHunter": {
"name": "G4SNVHunter",
"version": "1.2.0",
"sha256": "00zhnsnbz8c7nns2srapikwmrvp0vvf7mz3f881c6rxgvndhppc8",
"depends": ["Biostrings", "GenomicRanges", "IRanges", "Rcpp", "RcppRoll", "S4Vectors", "Seqinfo", "SummarizedExperiment", "VariantAnnotation", "cowplot", "data_table", "dplyr", "ggdensity", "ggplot2", "ggpointdensity", "ggseqlogo", "magrittr", "openxlsx", "progress", "tidyr", "viridis"]
},
"GA4GHclient": {
"name": "GA4GHclient",
"version": "1.34.0",
"sha256": "0w9bmfll450m4qrl984bzrjb8rnzr08z3zgkvbi7g2yf3dv1jg6q",
"depends": ["BiocGenerics", "Biostrings", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "VariantAnnotation", "dplyr", "httr", "jsonlite"]
},
"GA4GHshiny": {
"name": "GA4GHshiny",
"version": "1.32.0",
"sha256": "00im5cspwvnks9dns9ncbzi8fv6q127yc58lfr3qsxgxbm6li017",
"depends": ["AnnotationDbi", "BiocGenerics", "DT", "GA4GHclient", "GenomeInfoDb", "GenomicFeatures", "S4Vectors", "Seqinfo", "dplyr", "openxlsx", "purrr", "shiny", "shinyjs", "shinythemes", "tidyr"]
},
"GARS": {
"name": "GARS",
"version": "1.30.0",
"sha256": "1kzmi8w91f976x7c7l4aj7qy2xydspphaggdgcylmkvh8d464kyp",
"depends": ["DaMiRseq", "MLSeq", "SummarizedExperiment", "cluster", "ggplot2"]
},
"GAprediction": {
"name": "GAprediction",
"version": "1.36.0",
"sha256": "10yxp3kkx7ky87q17n3n9dja8af6c61pmz25zrj74xkip43qhkna",
"depends": ["Matrix", "glmnet"]
},
"GBScleanR": {
"name": "GBScleanR",
"version": "2.3.2",
"sha256": "0pb85ybypa0i5dnqv0ywffdkp53l1knv512dc2a2z9kmjifg4l3l",
"depends": ["Rcpp", "RcppParallel", "SeqArray", "expm", "gdsfmt", "ggplot2", "tidyr"]
},
"GCPtools": {
"name": "GCPtools",
"version": "1.0.0",
"sha256": "1m4ljd33vg5ari4xq8x1qsmdp0232w8f7x140mdh1gvg545rjjf4",
"depends": ["AnVILBase", "BiocBaseUtils", "dplyr", "httr", "rlang", "tibble", "tidyr"]
},
"GDCRNATools": {
"name": "GDCRNATools",
"version": "1.30.0",
"sha256": "12za6x6im4cpdk2g9w2d6smj0hxbn7v43h4dxq9c6sm5hyn6fv3i",
"depends": ["BiocParallel", "DESeq2", "DOSE", "DT", "GenomicDataCommons", "XML", "biomaRt", "clusterProfiler", "edgeR", "ggplot2", "gplots", "jsonlite", "limma", "org_Hs_eg_db", "pathview", "rjson", "shiny", "survival", "survminer"]
},
"GDSArray": {
"name": "GDSArray",
"version": "1.30.0",
"sha256": "1cvpk3x7yh08dblndf963alz9wc8crfzy271hxiz143gwmgfhn36",
"depends": ["BiocGenerics", "DelayedArray", "S4Vectors", "SNPRelate", "SeqArray", "gdsfmt"]
},
"GEM": {
"name": "GEM",
"version": "1.36.0",
"sha256": "0dx4ldbhc7w2h599sd5mcsvj45m9i3xzm9vh1m0j1wa079gfmk14",
"depends": ["ggplot2"]
},
"GENESIS": {
"name": "GENESIS",
"version": "2.40.0",
"sha256": "1g0cilgak0538wlq35m187d6mi3byfb44kic230idmi13ybq2yjw",
"depends": ["Biobase", "BiocGenerics", "BiocParallel", "GWASTools", "GenomicRanges", "IRanges", "Matrix", "S4Vectors", "SNPRelate", "SeqArray", "SeqVarTools", "data_table", "gdsfmt", "igraph", "reshape2"]
},
"GENIE3": {
"name": "GENIE3",
"version": "1.32.0",
"sha256": "0q48p119hg7x8w6m4xv0s9h6ii8334hq4dl32b4ffbdlmi41kia9",
"depends": ["dplyr", "reshape2"]
},
"GEOfastq": {
"name": "GEOfastq",
"version": "1.18.0",
"sha256": "132aky7zffvhzfnazvl8i3y82vvpipvm3kgdppbpjjiig4l3cz0q",
"depends": ["RCurl", "doParallel", "foreach", "plyr", "rvest", "stringr", "xml2"]
},
"GEOmetadb": {
"name": "GEOmetadb",
"version": "1.72.0",
"sha256": "0fhmcawv1lvbmkmfzyk0q83rcmiyc3m9visp4904nllv94zb4ir1",
"depends": ["RSQLite", "R_utils"]
},
"GEOquery": {
"name": "GEOquery",
"version": "2.78.0",
"sha256": "1rvvfyg7qz9sd02ymfs6006dmdm200aryliripnqkm6cdjzxd4mp",
"depends": ["Biobase", "R_utils", "S4Vectors", "SummarizedExperiment", "curl", "data_table", "dplyr", "httr2", "limma", "magrittr", "readr", "rentrez", "rvest", "stringr", "tidyr", "xml2"]
},
"GEOsubmission": {
"name": "GEOsubmission",
"version": "1.62.0",
"sha256": "1b2yx94ybc3rnbbwf7d70wbgq908k81xr9sbwb0aswjrsx551vfp",
"depends": ["Biobase", "affy"]
},
"GEWIST": {
"name": "GEWIST",
"version": "1.54.0",
"sha256": "12wj9f2lgacb157lzw9mn7d7nzy6kyiqzxrgkv0rj9lq5ng26bv8",
"depends": ["car"]
},
"GGPA": {
"name": "GGPA",
"version": "1.22.0",
"sha256": "0lqrxf0qshcn7gkhil0qsmf65n1aa52z5pxlayr28rwkn8sjllr4",
"depends": ["GGally", "Rcpp", "RcppArmadillo", "matrixStats", "network", "scales", "sna"]
},
"GIGSEA": {
"name": "GIGSEA",
"version": "1.28.0",
"sha256": "043ncc99w8a7pj04n17vcwrdq02f2636xqwcifrfaa0q7p0ir93w",
"depends": ["MASS", "Matrix", "locfdr"]
},
"GLAD": {
"name": "GLAD",
"version": "2.74.0",
"sha256": "1gqkr7bp8rrad8dq7jcmdda6604vnqg781wx7adpndwss0xi1zyh",
"depends": ["aws"]
},
"GMRP": {
"name": "GMRP",
"version": "1.38.0",
"sha256": "0xmf2rppnnn6lgxv1d88y52prqms2cryq31v4n9d3pvjk1899igj",
"depends": ["GenomicRanges", "diagram", "plotrix"]
},
"GNET2": {
"name": "GNET2",
"version": "1.26.0",
"sha256": "1s4iy7dwb82hgi08a08pjhmm29r4jhd8anbk11p15fax1pc3xhq9",
"depends": ["DiagrammeR", "Rcpp", "SummarizedExperiment", "dplyr", "ggplot2", "igraph", "matrixStats", "reshape2", "xgboost"]
},
"GNOSIS": {
"name": "GNOSIS",
"version": "1.8.0",
"sha256": "1m6p557jgwyr6ccglccw7ryxnkgalb18aralbmclmdfp6k65npfq",
"depends": ["DT", "DescTools", "RColorBrewer", "cBioPortalData", "car", "compareGroups", "dashboardthemes", "fabricatr", "fontawesome", "maftools", "magrittr", "operator_tools", "partykit", "reshape2", "rpart", "rstatix", "shiny", "shinyWidgets", "shinycssloaders", "shinydashboard", "shinydashboardPlus", "shinyjs", "shinylogs", "shinymeta", "survival", "survminer", "tidyverse"]
},
"GOSemSim": {
"name": "GOSemSim",
"version": "2.36.0",
"sha256": "0s5zpga9fjk5h8l8ql8zpyylqrfqfgy8zw9i60mlr8azifwq7hvk",
"depends": ["AnnotationDbi", "DBI", "GO_db", "R_utils", "Rcpp", "digest", "rlang", "yulab_utils"]
},
"GOTHiC": {
"name": "GOTHiC",
"version": "1.46.0",
"sha256": "0wvzzyff1v57sdj6dd7423gya9vrrfkhwmw8129dr0zsfvk9qwwr",
"depends": ["BSgenome", "BiocGenerics", "BiocManager", "Biostrings", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "ShortRead", "data_table", "ggplot2", "rtracklayer"]
},
"GOexpress": {
"name": "GOexpress",
"version": "1.44.0",
"sha256": "0kdlqvgssakc67pgc39p3qbyhc43x9gmi3vyrjn97h37i49f0mhr",
"depends": ["Biobase", "RColorBrewer", "RCurl", "biomaRt", "ggplot2", "gplots", "randomForest", "stringr"]
},
"GOfuncR": {
"name": "GOfuncR",
"version": "1.30.0",
"sha256": "1rvvzj3maa6xvvs0r9l994zk5pjbxgfmflg8waqqm6d6rd4ls4dv",
"depends": ["AnnotationDbi", "GenomicRanges", "IRanges", "Rcpp", "gtools", "mapplots", "vioplot"]
},
"GOpro": {
"name": "GOpro",
"version": "1.36.0",
"sha256": "0ry7h5gzzbyfi74m33qvqb8v8fj0y16ysf3wfnjhf9jngj365856",
"depends": ["AnnotationDbi", "BH", "GO_db", "IRanges", "MultiAssayExperiment", "Rcpp", "S4Vectors", "dendextend", "doParallel", "foreach", "org_Hs_eg_db"]
},
"GOstats": {
"name": "GOstats",
"version": "2.76.0",
"sha256": "1424z2hgimhwhwbwzz82vdsrgcwyfacn4mxl26ms2mry5mff9m9g",
"depends": ["AnnotationDbi", "AnnotationForge", "Biobase", "Category", "GO_db", "RBGL", "Rgraphviz", "annotate", "graph"]
},
"GPA": {
"name": "GPA",
"version": "1.22.0",
"sha256": "0w8mgcx1yiixa81s8yavka7q5kaly3fm9vvbp4jnx7d3mv8r74nr",
"depends": ["DT", "Rcpp", "ggplot2", "ggrepel", "plyr", "shiny", "shinyBS", "vegan"]
},
"GRENITS": {
"name": "GRENITS",
"version": "1.62.0",
"sha256": "18hjfsx4a8fyv458l71q0hz0k1jg07g0nkfh2v80vk7plkplqz7k",
"depends": ["Rcpp", "RcppArmadillo", "ggplot2", "reshape2"]
},
"GRaNIE": {
"name": "GRaNIE",
"version": "1.14.0",
"sha256": "16alzawsgk7a6jn6vc3jj4csh9l97z9nsh4i4x2g1nm5wx5sq8ry",
"depends": ["AnnotationHub", "Biostrings", "ComplexHeatmap", "DESeq2", "GenomeInfoDb", "GenomicRanges", "Matrix", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "biomaRt", "checkmate", "circlize", "colorspace", "data_table", "dplyr", "ensembldb", "forcats", "futile_logger", "ggplot2", "gridExtra", "igraph", "limma", "magrittr", "matrixStats", "patchwork", "progress", "readr", "reshape2", "rlang", "scales", "stringr", "tibble", "tidyr", "tidyselect", "topGO", "viridis"]
},
"GRmetrics": {
"name": "GRmetrics",
"version": "1.36.0",
"sha256": "1irgiwfx6s7w413mgdidkn341qhxqn050bdmh4mf3bh3dpmlrqij",
"depends": ["S4Vectors", "SummarizedExperiment", "drc", "ggplot2", "plotly"]
},
"GSALightning": {
"name": "GSALightning",
"version": "1.38.0",
"sha256": "16sm2sa4jvwpcd0hndg5khi4lzrsywjk05qfa05l19lgxfrcyfss",
"depends": ["Matrix", "data_table"]
},
"GSAR": {
"name": "GSAR",
"version": "1.44.0",
"sha256": "0p190i2kqzz0515phsj8hp83h8bix2hw0lwy7li2ghm4p85lf51k",
"depends": ["igraph"]
},
"GSCA": {
"name": "GSCA",
"version": "2.40.0",
"sha256": "1d6c9lxri0j5j84yn0fhdqv7ddhgpa8j0ypf3blvq3afl2jm0rjj",
"depends": ["RColorBrewer", "ggplot2", "gplots", "reshape2", "rhdf5", "shiny", "sp"]
},
"GSEABase": {
"name": "GSEABase",
"version": "1.72.0",
"sha256": "1sxd159msf51x1wfd2v67ngbc0lj6a8vdrc027f1xryh4gnnryk9",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "XML", "annotate", "graph"]
},
"GSEABenchmarkeR": {
"name": "GSEABenchmarkeR",
"version": "1.30.0",
"sha256": "0absc89fkhg1szjlc7brcw4nyvilp8w5h6yxq6gw1gx7z5k47gka",
"depends": ["AnnotationDbi", "AnnotationHub", "Biobase", "BiocFileCache", "BiocParallel", "EnrichmentBrowser", "ExperimentHub", "KEGGandMetacoreDzPathwaysGEO", "KEGGdzPathwaysGEO", "S4Vectors", "SummarizedExperiment", "edgeR"]
},
"GSEAlm": {
"name": "GSEAlm",
"version": "1.70.0",
"sha256": "0p29pvg0aaxarnlhr027031d191djscy2cl621rml40nd5dw5dyg",
"depends": ["Biobase"]
},
"GSEAmining": {
"name": "GSEAmining",
"version": "1.20.0",
"sha256": "1bljvni74vpbdf8n9b7yhh4r2wd4wr84rabinl8cr35jgipj1agv",
"depends": ["dendextend", "dplyr", "ggplot2", "ggwordcloud", "gridExtra", "rlang", "stringr", "tibble", "tidytext"]
},
"GSRI": {
"name": "GSRI",
"version": "2.58.0",
"sha256": "0j7vb5j9f3mdi42wap6qz2zd07aaymggw8sa7d7fj9inpr8jj2py",
"depends": ["Biobase", "GSEABase", "fdrtool", "genefilter", "les"]
},
"GSReg": {
"name": "GSReg",
"version": "1.44.0",
"sha256": "0f88hz0mqbp4pxgh7hwjav3dcjf2qw1gpfabziqdprm3xpkkfqc2",
"depends": ["AnnotationDbi", "GenomicFeatures", "Homo_sapiens", "org_Hs_eg_db"]
},
"GSVA": {
"name": "GSVA",
"version": "2.4.0",
"sha256": "169kikbzb5afgclcm73jgnrp2h6g5i9sckw2zkjjj797pc6vd1jz",
"depends": ["Biobase", "BiocGenerics", "BiocParallel", "BiocSingular", "DelayedArray", "DelayedMatrixStats", "GSEABase", "HDF5Array", "IRanges", "Matrix", "MatrixGenerics", "S4Arrays", "S4Vectors", "SingleCellExperiment", "SparseArray", "SpatialExperiment", "SummarizedExperiment", "cli", "sparseMatrixStats"]
},
"GSgalgoR": {
"name": "GSgalgoR",
"version": "1.20.0",
"sha256": "1544lnv9jkcwdc7056dydpmydpkgyphv7pfyqd2wria13rm0vg2c",
"depends": ["cluster", "doParallel", "foreach", "matchingR", "nsga2R", "proxy", "survival"]
},
"GUIDEseq": {
"name": "GUIDEseq",
"version": "1.40.0",
"sha256": "1nm7bfg6s68m1p4il60cm0p1sfy9lqswispd1mlcbfmlqj7n7b74",
"depends": ["BSgenome", "BiocGenerics", "Biostrings", "CRISPRseek", "ChIPpeakAnno", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "data_table", "dplyr", "ggplot2", "hash", "limma", "matrixStats", "multtest", "openxlsx", "patchwork", "purrr", "pwalign", "rio", "rlang", "stringr", "tidyr"]
},
"GWAS_BAYES": {
"name": "GWAS.BAYES",
"version": "1.20.0",
"sha256": "17q782b4qfs471vc8ivg64ika97698swramclfrqbhpk7444xq9k",
"depends": ["GA", "MASS", "Matrix", "caret", "limma", "memoise"]
},
"GWASTools": {
"name": "GWASTools",
"version": "1.56.0",
"sha256": "0lkv2ccibjh7mw3p4j17ir5c0kp96q6086wh6h9ida33mbbbjw7k",
"depends": ["Biobase", "DBI", "DNAcopy", "GWASExactHW", "RSQLite", "data_table", "gdsfmt", "lmtest", "logistf", "quantsmooth", "sandwich", "survival"]
},
"GWENA": {
"name": "GWENA",
"version": "1.20.0",
"sha256": "119ap7kdi9vrxi6v7rh7wmkfabz985jizjxhnnk2wc6crd3sajms",
"depends": ["NetRep", "RColorBrewer", "SummarizedExperiment", "WGCNA", "cluster", "dplyr", "dynamicTreeCut", "ggplot2", "gprofiler2", "igraph", "magrittr", "matrixStats", "purrr", "rlist", "stringr", "tibble", "tidyr"]
},
"GateFinder": {
"name": "GateFinder",
"version": "1.30.0",
"sha256": "0g0j96r0a1c4l2ns5cmvr8b1pdf6ph37mswbkjc25wdkykim1f5x",
"depends": ["diptest", "flowCore", "flowFP", "mvoutlier", "splancs"]
},
"GenProSeq": {
"name": "GenProSeq",
"version": "1.14.0",
"sha256": "1mrbj0adlvngchyk8jhqsykhwawhmq4sxybmj3nwi4zgr3ad9781",
"depends": ["CatEncoders", "DeepPINCS", "keras", "mclust", "reticulate", "tensorflow", "ttgsea", "word2vec"]
},
"GeneBreak": {
"name": "GeneBreak",
"version": "1.40.0",
"sha256": "0s4973b63rdcdci9gm6rp19rjd1zsknfyi7sp81jb3d0b3jgxhnj",
"depends": ["CGHbase", "CGHcall", "GenomicRanges", "QDNAseq"]
},
"GeneExpressionSignature": {
"name": "GeneExpressionSignature",
"version": "1.56.0",
"sha256": "0rzi04xbqhbyk1l9vcndd0abhi0qa58bgn5bdb214lphf9p2rp1k",
"depends": ["Biobase"]
},
"GeneGA": {
"name": "GeneGA",
"version": "1.60.0",
"sha256": "1ifni019hlsvf68ksm31fj0pn1455j22vq00c1368cjmnysbvclk",
"depends": ["hash", "seqinr"]
},
"GeneMeta": {
"name": "GeneMeta",
"version": "1.82.0",
"sha256": "18b5zkji6k6vaw42amhimkxnijrk3vff6bn3kyx9fvx70czv6yp3",
"depends": ["Biobase", "genefilter"]
},
"GeneNetworkBuilder": {
"name": "GeneNetworkBuilder",
"version": "1.52.0",
"sha256": "1l439fyqg49sz8c00h225xlc9jdd017bvhagws69hfadms2qlvca",
"depends": ["RCy3", "Rcpp", "Rgraphviz", "XML", "graph", "htmlwidgets", "plyr", "rjson"]
},
"GeneOverlap": {
"name": "GeneOverlap",
"version": "1.46.0",
"sha256": "05yf6h1swvmfgn5zkjrlq7w8kxyidi4nqygw0d65plkb655b6wav",
"depends": ["RColorBrewer", "gplots"]
},
"GeneRegionScan": {
"name": "GeneRegionScan",
"version": "1.66.0",
"sha256": "1m7a9sxaa9m7axn79l965p2bvqa0pfjr2az0mff1gqaw7b9pvbh2",
"depends": ["Biobase", "Biostrings", "RColorBrewer", "S4Vectors", "affxparser"]
},
"GeneSelectMMD": {
"name": "GeneSelectMMD",
"version": "2.54.0",
"sha256": "10xfc6cql49f5s169pmfnh82fgmwjvlmabq5bdrhzmpa3a5n5xzw",
"depends": ["Biobase", "MASS", "limma"]
},
"GeneStructureTools": {
"name": "GeneStructureTools",
"version": "1.30.0",
"sha256": "09wbbhrmvq3zxvx9xa087w5v17y8m5kn998bl0v1kbwlms0pnqf6",
"depends": ["BSgenome_Mmusculus_UCSC_mm10", "Biostrings", "GenomicRanges", "Gviz", "IRanges", "S4Vectors", "data_table", "plyr", "rtracklayer", "stringdist", "stringr"]
},
"GeneticsPed": {
"name": "GeneticsPed",
"version": "1.72.0",
"sha256": "0zx48p90k3kdjvz0aasr0zn2288c1wqzrs6s5p1npc7ddcx0wy98",
"depends": ["MASS", "gdata", "genetics"]
},
"GenomAutomorphism": {
"name": "GenomAutomorphism",
"version": "1.12.0",
"sha256": "190alhczdvhyq0rj94h3nwcp33hpw4r6hm9rgan2l2jak5yr6fwh",
"depends": ["BiocGenerics", "BiocParallel", "Biostrings", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "XVector", "data_table", "doParallel", "dplyr", "foreach", "matrixStats", "numbers"]
},
"GenomeInfoDb": {
"name": "GenomeInfoDb",
"version": "1.46.0",
"sha256": "03mxzpz9pwhmg63is4pn5gbrkcphfj9nyzdpxymhy9s8nv3hzfd9",
"depends": ["BiocGenerics", "IRanges", "S4Vectors", "Seqinfo", "UCSC_utils"]
},
"GenomicAlignments": {
"name": "GenomicAlignments",
"version": "1.46.0",
"sha256": "18s65wfkb568fiqqxbg50qpjv2x1ryrj3zrmafqqsp7xv6da6zzj",
"depends": ["BiocGenerics", "BiocParallel", "Biostrings", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "cigarillo"]
},
"GenomicDataCommons": {
"name": "GenomicDataCommons",
"version": "1.33.1",
"sha256": "0x4h82rqjiicxb1kfbg4a43yi620nrw3msw2vgfys7pyl1cmh3is",
"depends": ["GenomicRanges", "IRanges", "dplyr", "httr", "jsonlite", "rappdirs", "readr", "rlang", "tibble", "tidyr", "xml2"]
},
"GenomicDistributions": {
"name": "GenomicDistributions",
"version": "1.18.0",
"sha256": "18ifnqsh95yhc990bi4dnr9fd0hbr7jksvpwlxvh6am3lsrg9b8s",
"depends": ["Biostrings", "GenomeInfoDb", "GenomicRanges", "IRanges", "broom", "data_table", "dplyr", "ggplot2", "plyr", "reshape2", "scales"]
},
"GenomicFeatures": {
"name": "GenomicFeatures",
"version": "1.62.0",
"sha256": "0rszhpmfsvn5iz3gzr3z07r7ykpmk4cbmfnjf9k2z59knnn1x9gp",
"depends": ["AnnotationDbi", "BiocGenerics", "Biostrings", "DBI", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "XVector", "rtracklayer"]
},
"GenomicFiles": {
"name": "GenomicFiles",
"version": "1.46.0",
"sha256": "0mw8h491i20lq94r4dd4ky7ivn7ci722g314rdaphm2dvknkrda7",
"depends": ["BiocBaseUtils", "BiocGenerics", "BiocParallel", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "MatrixGenerics", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "VariantAnnotation", "rtracklayer"]
},
"GenomicInteractionNodes": {
"name": "GenomicInteractionNodes",
"version": "1.14.0",
"sha256": "1fwl85smbprr7gdhgrwnr8dp0hr0xk5xqsycdzzi592nf1vz6imy",
"depends": ["AnnotationDbi", "GO_db", "GenomicFeatures", "GenomicRanges", "IRanges", "RBGL", "S4Vectors", "Seqinfo", "graph"]
},
"GenomicInteractions": {
"name": "GenomicInteractions",
"version": "1.44.0",
"sha256": "1kfmlznlagjxzvwpnk18b5f5612fflkm66m93gky6ppi65ppv7xp",
"depends": ["Biobase", "BiocGenerics", "GenomicRanges", "Gviz", "IRanges", "InteractionSet", "Rsamtools", "S4Vectors", "Seqinfo", "data_table", "dplyr", "ggplot2", "gridExtra", "igraph", "rtracklayer", "stringr"]
},
"GenomicOZone": {
"name": "GenomicOZone",
"version": "1.24.0",
"sha256": "13m5h8ychama0bg52mnd73yq3g3zp3mh445y9q9hc8pbwr6ybxiw",
"depends": ["Ckmeans_1d_dp", "GenomicRanges", "IRanges", "Rdpack", "S4Vectors", "Seqinfo", "biomaRt", "ggbio", "ggplot2", "gridExtra", "lsr", "plyr"]
},
"GenomicPlot": {
"name": "GenomicPlot",
"version": "1.8.0",
"sha256": "0nb1jl5fv2jn9mza0qxysczp5zas0xy3h61kmfjxkivqdnn0ga5b",
"depends": ["BiocGenerics", "ComplexHeatmap", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "RCAS", "Rsamtools", "Seqinfo", "VennDiagram", "circlize", "cowplot", "dplyr", "edgeR", "genomation", "ggplot2", "ggplotify", "ggpubr", "ggsci", "ggsignif", "plyranges", "rtracklayer", "scales", "tidyr", "txdbmaker", "viridis"]
},
"GenomicRanges": {
"name": "GenomicRanges",
"version": "1.62.0",
"sha256": "0wsbl49c542k107cgczsw5dynnrrwk9hslks229zpvxlcvapmivv",
"depends": ["BiocGenerics", "IRanges", "S4Vectors", "Seqinfo"]
},
"GenomicScores": {
"name": "GenomicScores",
"version": "2.22.0",
"sha256": "02ij02npfcx97bapga1w3mfy7k6fkf203gsd5b5rf19ja79bq4nw",
"depends": ["AnnotationHub", "Biobase", "BiocFileCache", "BiocGenerics", "BiocManager", "Biostrings", "DelayedArray", "GenomeInfoDb", "GenomicRanges", "HDF5Array", "IRanges", "S4Vectors", "Seqinfo", "XML", "httr", "rhdf5"]
},
"GenomicSuperSignature": {
"name": "GenomicSuperSignature",
"version": "1.18.0",
"sha256": "04dmmmgzmzkwdrydg4a3wv0zna4imiv8by4fbs776gpas1cbpag0",
"depends": ["Biobase", "BiocFileCache", "ComplexHeatmap", "S4Vectors", "SummarizedExperiment", "dplyr", "flextable", "ggplot2", "ggpubr", "irlba", "plotly"]
},
"GenomicTuples": {
"name": "GenomicTuples",
"version": "1.44.0",
"sha256": "0c9b0vvwzm99qfx36nlz1b4nvnsjirdh22121w0wnsrn0x2xi398",
"depends": ["BiocGenerics", "GenomicRanges", "IRanges", "Rcpp", "S4Vectors", "Seqinfo", "data_table"]
},
"GeoDiff": {
"name": "GeoDiff",
"version": "1.16.0",
"sha256": "04jmzrz0y1yq6hqzvqp7wyv489xxswr2rv9ag4fvdcmgkzwikwnk",
"depends": ["Biobase", "GeomxTools", "Matrix", "NanoStringNCTools", "Rcpp", "RcppArmadillo", "lme4", "plyr", "robust", "roptim", "testthat", "withr"]
},
"GeoTcgaData": {
"name": "GeoTcgaData",
"version": "2.10.0",
"sha256": "1rkyzq2i4rk2rhppbzqppkgl2886fhkkzb7i6xyn4zmajw7jq2vk",
"depends": ["SummarizedExperiment", "cqn", "data_table", "plyr", "topconfects"]
},
"GeomxTools": {
"name": "GeomxTools",
"version": "3.14.0",
"sha256": "0i0dy14vchh53nsfdhslgkmcc64yiip6kj2mjsfmcyjffr8jwn8b",
"depends": ["Biobase", "BiocGenerics", "EnvStats", "GGally", "NanoStringNCTools", "S4Vectors", "SeuratObject", "data_table", "dplyr", "ggplot2", "lmerTest", "readxl", "reshape2", "rjson", "rlang", "stringr"]
},
"GladiaTOX": {
"name": "GladiaTOX",
"version": "1.26.0",
"sha256": "1ij5kqkm21da1193h5rq7ahif6rfsrgnv446l2cx9nlc1rfss99a",
"depends": ["DBI", "RColorBrewer", "RCurl", "RJSONIO", "RMariaDB", "RSQLite", "XML", "brew", "data_table", "ggplot2", "ggrepel", "numDeriv", "stringr", "tidyr", "xtable"]
},
"Glimma": {
"name": "Glimma",
"version": "2.20.0",
"sha256": "1icnw7f77vcgg4bk6scxg5qgcdhgy5kij38l3gxrm75gbp6xr23y",
"depends": ["DESeq2", "S4Vectors", "SummarizedExperiment", "edgeR", "htmlwidgets", "jsonlite", "limma"]
},
"GloScope": {
"name": "GloScope",
"version": "2.0.0",
"sha256": "0vkvy3kmkmwg9g003cjhlczchqj1pxmlfp8y93hhxbwv4i6hxwzd",
"depends": ["BiocParallel", "FNN", "MASS", "RANN", "RColorBrewer", "SingleCellExperiment", "boot", "cluster", "ggplot2", "mclust", "mvnfast", "permute", "pheatmap", "rlang", "vegan"]
},
"GlobalAncova": {
"name": "GlobalAncova",
"version": "4.28.0",
"sha256": "0r99pdfbvhfwlikz3lvz31q7xdfw7a51x9vwn79b2wwjkg36r6y8",
"depends": ["AnnotationDbi", "Biobase", "GSEABase", "VGAM", "annotate", "corpcor", "dendextend", "globaltest"]
},
"GmicR": {
"name": "GmicR",
"version": "1.24.0",
"sha256": "0zr05hzcqy8wz75zw0q6j5jnzcrbwllsiq8l3yhk2biyi85xi3l4",
"depends": ["AnnotationDbi", "Category", "DT", "GOstats", "GSEABase", "WGCNA", "ape", "bnlearn", "data_table", "doParallel", "foreach", "gRain", "gRbase", "org_Hs_eg_db", "org_Mm_eg_db", "reshape2", "shiny"]
},
"GrafGen": {
"name": "GrafGen",
"version": "1.6.0",
"sha256": "1lamgbykja2hjqvqbgkav9flbhlj6235afnda9w908x4zywi4hwc",
"depends": ["GenomicRanges", "RColorBrewer", "cowplot", "dplyr", "ggplot2", "ggpubr", "plotly", "rlang", "scales", "shiny", "stringr"]
},
"GraphAT": {
"name": "GraphAT",
"version": "1.82.0",
"sha256": "114zcxv9fq6ljhn6wqra99ls5in7dqz942s2d4rk8ls2w92nnfjc",
"depends": ["MCMCpack", "graph"]
},
"GraphAlignment": {
"name": "GraphAlignment",
"version": "1.74.0",
"sha256": "11dikrddkhgysi0528sn6qr7mmwwks1rdzyjygnbb1kyacf5m4bc",
"depends": []
},
"GreyListChIP": {
"name": "GreyListChIP",
"version": "1.42.0",
"sha256": "0gm1d021ik5k9dnvczagxdsrpfl85p4qzhbp1frar31ki15h3hli",
"depends": ["BSgenome", "GenomicAlignments", "GenomicRanges", "MASS", "Rsamtools", "Seqinfo", "SummarizedExperiment", "rtracklayer"]
},
"Guitar": {
"name": "Guitar",
"version": "2.26.0",
"sha256": "02lhisr6ical6yy7m7r4w3b4nfxy5dhfydkaqh2fhfr4rd3igw0v",
"depends": ["AnnotationDbi", "GenomicFeatures", "GenomicRanges", "dplyr", "ggplot2", "knitr", "magrittr", "rtracklayer"]
},
"Gviz": {
"name": "Gviz",
"version": "1.54.0",
"sha256": "0vljk50i5xgw31dgdxdjqxl2r3cvjm6423fz3iz80xbbax039mjs",
"depends": ["AnnotationDbi", "BSgenome", "Biobase", "BiocGenerics", "Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "RColorBrewer", "Rsamtools", "S4Vectors", "Seqinfo", "XVector", "biomaRt", "biovizBase", "digest", "ensembldb", "lattice", "latticeExtra", "matrixStats", "rtracklayer"]
},
"HDF5Array": {
"name": "HDF5Array",
"version": "1.38.0",
"sha256": "1qk3qpy3lha44h0d7xr30qvp9gvxh1xr8xqz34irnq8c758zlcmp",
"depends": ["BiocGenerics", "DelayedArray", "IRanges", "Matrix", "S4Arrays", "S4Vectors", "SparseArray", "h5mread", "rhdf5"]
},
"HDTD": {
"name": "HDTD",
"version": "1.44.0",
"sha256": "1qhvsrd50vxs16kkx0a60sb1jab88wnshi288n78dq8iz5kv52n4",
"depends": ["Rcpp", "RcppArmadillo"]
},
"HELP": {
"name": "HELP",
"version": "1.68.0",
"sha256": "1n0c5s2pr1xqr0amsaf6ibdria0hpk7aavw5x74j5h2lgy438irh",
"depends": ["Biobase"]
},
"HEM": {
"name": "HEM",
"version": "1.82.0",
"sha256": "0c78k48znjj9h5hbb4q8pamdjddcq7xpkc4isgvf6lr7ih9p26ka",
"depends": ["Biobase"]
},
"HERON": {
"name": "HERON",
"version": "1.8.0",
"sha256": "1s46g0l2yj7kxqw9bm0xj0ymxbbjhr2yq9zflapn5a0acnn764zv",
"depends": ["GenomicRanges", "IRanges", "Matrix", "S4Vectors", "SummarizedExperiment", "cluster", "data_table", "harmonicmeanp", "limma", "matrixStats", "metap", "spdep"]
},
"HGC": {
"name": "HGC",
"version": "1.18.0",
"sha256": "11ywqqpmfmjqasmzryqcqhrfsjd4whicxy0bcigy18g1fwr1aj83",
"depends": ["Matrix", "RANN", "Rcpp", "RcppEigen", "ape", "dendextend", "dplyr", "ggplot2", "mclust", "patchwork"]
},
"HIBAG": {
"name": "HIBAG",
"version": "1.46.0",
"sha256": "1qwq7z1b9w9fpaqwvizgzhlh1x1sb71frb5lmapa07v7vd2ma9l0",
"depends": ["RcppParallel"]
},
"HIPPO": {
"name": "HIPPO",
"version": "1.22.0",
"sha256": "19yhqi6558nkr7z7acpnz5ssbdwq40jaiklgmkrggp0ajgqzwgjj",
"depends": ["Matrix", "Rtsne", "SingleCellExperiment", "dplyr", "ggplot2", "ggrepel", "gridExtra", "irlba", "magrittr", "reshape2", "rlang", "umap"]
},
"HIREewas": {
"name": "HIREewas",
"version": "1.28.0",
"sha256": "15s30lyw9nj63iar93pad6ciccb0ak1iyhpvdj14hc8j03gbgplh",
"depends": ["gplots", "quadprog"]
},
"HMMcopy": {
"name": "HMMcopy",
"version": "1.52.0",
"sha256": "1crn45v9mfciw54vmh80zaqwmxky23ssgplabyp9an7mddzkiyjz",
"depends": ["data_table"]
},
"HPAanalyze": {
"name": "HPAanalyze",
"version": "1.28.0",
"sha256": "1mvn9gxlvsgy8688lrxa1an4mhxr6hhawqqqkxzwgnk68hra9n10",
"depends": ["dplyr", "ggplot2", "gridExtra", "openxlsx", "tibble", "xml2"]
},
"HTSFilter": {
"name": "HTSFilter",
"version": "1.50.0",
"sha256": "0fk74glws1gf07wz630afjfifvqn5gcacli01l3q5knwhf94x2an",
"depends": ["Biobase", "BiocParallel", "DESeq2", "edgeR"]
},
"HTqPCR": {
"name": "HTqPCR",
"version": "1.64.0",
"sha256": "1f725965zrmmpf5wxb2l05p8l5d7k9z7b26ac0gxk5m24hnhkmkr",
"depends": ["Biobase", "RColorBrewer", "affy", "gplots", "limma"]
},
"HVP": {
"name": "HVP",
"version": "1.0.0",
"sha256": "0j2alj0a976lj056lhikapw48kfcdd1xn08d5gclnnwhr0d0nif1",
"depends": ["Matrix"]
},
"Harman": {
"name": "Harman",
"version": "1.38.0",
"sha256": "028pj0gkky32kz78jfkzxc3q67y7f10sdjiqnf7j5l8y7y38mv7y",
"depends": ["Ckmeans_1d_dp", "Rcpp", "matrixStats"]
},
"HarmonizR": {
"name": "HarmonizR",
"version": "1.8.0",
"sha256": "0xzniy0z030zbzx90rg6bx4filv3dkzgxihb0lvnvhgrdg67mb8x",
"depends": ["SummarizedExperiment", "doParallel", "foreach", "janitor", "limma", "plyr", "seriation", "sva"]
},
"Heatplus": {
"name": "Heatplus",
"version": "3.18.0",
"sha256": "1y365hbvvpy785ir2fmzh6wzxvf24g5zh177a5yjhsbl9agmcxyf",
"depends": ["RColorBrewer"]
},
"HelloRanges": {
"name": "HelloRanges",
"version": "1.36.0",
"sha256": "1az2pvxi9jnbsjk9xva85mbwq95h0wpsp3w9a3cylwwjwmflrg4n",
"depends": ["BSgenome", "BiocGenerics", "BiocIO", "Biostrings", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "VariantAnnotation", "docopt", "rtracklayer"]
},
"Herper": {
"name": "Herper",
"version": "1.20.0",
"sha256": "0ascr9kfk6wxbg6hav0ygkxcb88cqg7fphfa5s43hpiqmkvx6h25",
"depends": ["reticulate", "rjson", "withr"]
},
"HiCBricks": {
"name": "HiCBricks",
"version": "1.28.0",
"sha256": "03fmkg629vsi38r93lxz1mqf38r051hy8l1djwmr6mcfmfcx5dgw",
"depends": ["BiocParallel", "GenomicRanges", "IRanges", "R6", "RColorBrewer", "R_utils", "S4Vectors", "Seqinfo", "curl", "data_table", "digest", "ggplot2", "jsonlite", "readr", "reshape2", "rhdf5", "scales", "stringr", "tibble", "viridis"]
},
"HiCDCPlus": {
"name": "HiCDCPlus",
"version": "1.18.0",
"sha256": "1mgdj692ds66c46qzqnhszlww59ab32sg1rq9vqhmf9y27vkcj4i",
"depends": ["BSgenome", "Biostrings", "GenomeInfoDb", "GenomicInteractions", "GenomicRanges", "IRanges", "InteractionSet", "MASS", "R_utils", "Rcpp", "S4Vectors", "bbmle", "data_table", "dplyr", "pscl", "rlang", "rtracklayer", "tibble", "tidyr"]
},
"HiCDOC": {
"name": "HiCDOC",
"version": "1.12.0",
"sha256": "1hd259kdg3w3czcr6fczdsabsbqi62ca2y9ym5brykxwh4ak6i5l",
"depends": ["BiocGenerics", "BiocParallel", "GenomicRanges", "InteractionSet", "Rcpp", "S4Vectors", "Seqinfo", "SummarizedExperiment", "cowplot", "data_table", "ggplot2", "gridExtra", "gtools", "multiHiCcompare", "pbapply"]
},
"HiCExperiment": {
"name": "HiCExperiment",
"version": "1.10.0",
"sha256": "1gx225p1xx576af9f996gaqqkqpiah8ayfgc9x2p449759jh2x7j",
"depends": ["BiocGenerics", "BiocIO", "BiocParallel", "GenomicRanges", "IRanges", "InteractionSet", "Matrix", "S4Vectors", "Seqinfo", "dplyr", "rhdf5", "strawr", "vroom"]
},
"HiCParser": {
"name": "HiCParser",
"version": "1.2.0",
"sha256": "17jf2br63q3lfw5ndv0r6pzqx73gc2djfzk5wvl8rbx2x5g8zvis",
"depends": ["BiocGenerics", "GenomicRanges", "InteractionSet", "Rcpp", "S4Vectors", "Seqinfo", "SummarizedExperiment", "data_table", "gtools", "pbapply"]
},
"HiCPotts": {
"name": "HiCPotts",
"version": "1.0.0",
"sha256": "1bx691rszn4qzisjha4k829a3pf7z268k0vqkbg20xqhqisfcw87",
"depends": ["BSgenome", "BSgenome_Dmelanogaster_UCSC_dm6", "Biostrings", "GenomicRanges", "IRanges", "Rcpp", "RcppArmadillo", "S4Vectors", "rhdf5", "rtracklayer", "strawr"]
},
"HiCaptuRe": {
"name": "HiCaptuRe",
"version": "1.0.0",
"sha256": "1h0dc584zqqj4h1k7h8d0y6950r15r1mbwdvsmv29kklpagxbd2j",
"depends": ["BSgenome", "Biostrings", "GenomeInfoDb", "GenomicInteractions", "GenomicRanges", "IRanges", "InteractionSet", "S4Vectors", "UpSetR", "cli", "data_table", "dplyr", "ggVennDiagram", "ggplot2", "ggpubr", "gplots", "igraph", "memoise", "stringr", "tibble", "tidyr"]
},
"HiCcompare": {
"name": "HiCcompare",
"version": "1.32.0",
"sha256": "1q8w2m588pvsnv907mpz2n9q64230m0ijy3wnvzi6iy4wgkcwh6g",
"depends": ["BiocParallel", "GenomicRanges", "IRanges", "InteractionSet", "KernSmooth", "S4Vectors", "data_table", "dplyr", "ggplot2", "gridExtra", "gtools", "mgcv", "pheatmap", "rhdf5"]
},
"HiContacts": {
"name": "HiContacts",
"version": "1.12.0",
"sha256": "1qanyvd68z3v6x6570hh54ppqmx3k9v8r2z0ykc5a1wa6xi9cwp1",
"depends": ["BiocGenerics", "BiocIO", "BiocParallel", "GenomeInfoDb", "GenomicRanges", "HiCExperiment", "IRanges", "InteractionSet", "Matrix", "RSpectra", "S4Vectors", "SummarizedExperiment", "dplyr", "ggplot2", "ggrastr", "readr", "scales", "stringr", "tibble", "tidyr"]
},
"HiLDA": {
"name": "HiLDA",
"version": "1.24.0",
"sha256": "15jh2brpk0kz15hra2h3fw5fygarxi5dgd6d1cmrbx4pxizg9lbc",
"depends": ["BSgenome_Hsapiens_UCSC_hg19", "BiocGenerics", "Biostrings", "GenomicFeatures", "GenomicRanges", "R2jags", "Rcpp", "S4Vectors", "TxDb_Hsapiens_UCSC_hg19_knownGene", "XVector", "abind", "cowplot", "forcats", "ggplot2", "stringr", "tidyr"]
},
"HiTC": {
"name": "HiTC",
"version": "1.54.0",
"sha256": "0jnqp4n0yzrvfbrs29hz8spyafqcz4c1r7iym089m260l5l93y3n",
"depends": ["Biostrings", "GenomicRanges", "IRanges", "Matrix", "RColorBrewer", "Seqinfo", "rtracklayer"]
},
"HicAggR": {
"name": "HicAggR",
"version": "1.6.0",
"sha256": "1dqbbd049slzzlypfsjswaqvxrq724smcm2d4sbjq82ngrlgi9wx",
"depends": ["BiocGenerics", "BiocParallel", "GenomicRanges", "IRanges", "InteractionSet", "Matrix", "S4Vectors", "Seqinfo", "checkmate", "data_table", "dplyr", "ggplot2", "gridExtra", "purrr", "reshape", "rhdf5", "rlang", "rtracklayer", "strawr", "stringr", "tibble", "tidyr", "withr"]
},
"HilbertCurve": {
"name": "HilbertCurve",
"version": "2.4.0",
"sha256": "0c9j2isy67012hyzfy8m30l900r9g4cfkcir1jvkcl3p8ndk74pj",
"depends": ["GenomicRanges", "IRanges", "Rcpp", "circlize", "png", "polylabelr"]
},
"HilbertVis": {
"name": "HilbertVis",
"version": "1.68.0",
"sha256": "0x7bvirqibj0bykhv4f1qji8mbrsm288l9d901jjbvrwd0nfmh04",
"depends": ["lattice"]
},
"HilbertVisGUI": {
"name": "HilbertVisGUI",
"version": "1.68.0",
"sha256": "0c5fvhplpqmap0nsc04mlmybb5d092y655lyj771b1hpp40yd0dh",
"depends": ["HilbertVis"]
},
"HoloFoodR": {
"name": "HoloFoodR",
"version": "1.4.0",
"sha256": "1y7q3kldwdmj57jd6wy24ss0fw254sy6794lllhd98r2crp7qqv9",
"depends": ["MultiAssayExperiment", "S4Vectors", "SummarizedExperiment", "TreeSummarizedExperiment", "dplyr", "httr2", "jsonlite", "stringi"]
},
"HuBMAPR": {
"name": "HuBMAPR",
"version": "1.4.0",
"sha256": "0frk061x9f1h5ypvnkqm1j940aqzysla6x095wll9f17vjl29zpx",
"depends": ["dplyr", "httr2", "purrr", "rjsoncons", "rlang", "stringr", "tibble", "tidyr", "whisker"]
},
"HubPub": {
"name": "HubPub",
"version": "1.18.0",
"sha256": "0vfjwncf9b9swngm360xfy7mblmw6bymqgs77v9qc3qd2wswydg8",
"depends": ["BiocManager", "available", "aws_s3", "biocthis", "dplyr", "fs", "usethis"]
},
"HybridExpress": {
"name": "HybridExpress",
"version": "1.6.0",
"sha256": "1awlw7q3c60qs507dy3dcvip3si2ds4qjpl9bc4fzy7wjnc2nfym",
"depends": ["BiocParallel", "ComplexHeatmap", "DESeq2", "RColorBrewer", "SummarizedExperiment", "ggplot2", "patchwork", "rlang"]
},
"HybridMTest": {
"name": "HybridMTest",
"version": "1.54.0",
"sha256": "0cyzag5b1c5i6dpykpgl08dlgsdqz3pwfz9yq6ycy0yv9i78hqi5",
"depends": ["Biobase", "MASS", "fdrtool", "survival"]
},
"IFAA": {
"name": "IFAA",
"version": "1.12.0",
"sha256": "1pyq3k6v7f6a1993mnp1g45l6yp2yarzazkvvfq42qccgqx37r60",
"depends": ["DescTools", "HDCI", "Matrix", "MatrixExtra", "S4Vectors", "SummarizedExperiment", "doParallel", "doRNG", "foreach", "glmnet", "mathjaxr", "parallelly", "stringr"]
},
"IHW": {
"name": "IHW",
"version": "1.38.0",
"sha256": "02ni484hfw9r76shdq1hchlr11i6h6c5p620ybqfw6vk0cr6nb6g",
"depends": ["BiocGenerics", "fdrtool", "lpsymphony", "slam"]
},
"ILoReg": {
"name": "ILoReg",
"version": "1.20.0",
"sha256": "1bik7wni596n7vhxzx81xp41sadqs8ynmm6d4mxyya82qyymvzj9",
"depends": ["DescTools", "LiblineaR", "Matrix", "RSpectra", "Rtsne", "S4Vectors", "SingleCellExperiment", "SparseM", "SummarizedExperiment", "aricode", "cluster", "cowplot", "dendextend", "doRNG", "doSNOW", "dplyr", "fastcluster", "foreach", "ggplot2", "parallelDist", "pheatmap", "plyr", "reshape2", "scales", "umap"]
},
"IMMAN": {
"name": "IMMAN",
"version": "1.30.0",
"sha256": "1fwvc3x8cir66dp414f0x0d1i5c15nyi8zvb108zycl7m411hk89",
"depends": ["STRINGdb", "igraph", "pwalign", "seqinr"]
},
"IMPCdata": {
"name": "IMPCdata",
"version": "1.46.0",
"sha256": "0k9wn6daydbpsxlflc395iimghcq20ik42sf8fsvm6kvzkmq388p",
"depends": ["rjson"]
},
"INDEED": {
"name": "INDEED",
"version": "2.24.0",
"sha256": "0s5crvplgalw394x8fknpicnxipg09051ib0jbbwix1xb0r68car",
"depends": ["devtools", "glasso", "igraph", "visNetwork"]
},
"INPower": {
"name": "INPower",
"version": "1.46.0",
"sha256": "15p46b8wgwmv289kg5hw97inigq49jyb90y9klg6fqv8rwlghpxm",
"depends": ["mvtnorm"]
},
"INSPEcT": {
"name": "INSPEcT",
"version": "1.40.0",
"sha256": "1wfnwrgnpsrvavqdbvj57llgjf0j7yljpyhlbxbp0gbmxs9i1bnf",
"depends": ["Biobase", "BiocGenerics", "BiocParallel", "DESeq2", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "KernSmooth", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "TxDb_Mmusculus_UCSC_mm9_knownGene", "deSolve", "pROC", "plgem", "readxl", "rootSolve", "rtracklayer", "shiny"]
},
"INTACT": {
"name": "INTACT",
"version": "1.10.0",
"sha256": "1hlwmy4fmvrw9v3wr02jjrlj9xmdkvsd1dq4h13rfbdcfkbisxla",
"depends": ["SQUAREM", "bdsmatrix", "ggplot2", "numDeriv", "tidyr"]
},
"IONiseR": {
"name": "IONiseR",
"version": "2.34.0",
"sha256": "1zz8sfjbimdmjq3dv6jpsvw8yf8yig8656rdmp30xh4407ks4br6",
"depends": ["BiocGenerics", "BiocParallel", "Biostrings", "ShortRead", "XVector", "bit64", "dplyr", "ggplot2", "magrittr", "rhdf5", "stringr", "tibble", "tidyr"]
},
"IPO": {
"name": "IPO",
"version": "1.36.0",
"sha256": "147554d7jg47hm1jawa4wg9fzv7z00kyxw8babr6r6q0qdz78il7",
"depends": ["BiocParallel", "CAMERA", "rsm", "xcms"]
},
"IRanges": {
"name": "IRanges",
"version": "2.44.0",
"sha256": "0hjhc244p67gnlg2f1x71p6rypmkggn1sqp8r8psw1aq9355aki4",
"depends": ["BiocGenerics", "S4Vectors"]
},
"ISAnalytics": {
"name": "ISAnalytics",
"version": "1.20.0",
"sha256": "1b6q0cx3nvklp5458gs8qb33d0fs362y9sp90snjpajs52n07ilw",
"depends": ["DT", "bslib", "data_table", "datamods", "dplyr", "forcats", "fs", "ggplot2", "ggrepel", "glue", "lifecycle", "lubridate", "purrr", "readr", "readxl", "rlang", "shiny", "shinyWidgets", "stringr", "tibble", "tidyr", "vegan"]
},
"ISLET": {
"name": "ISLET",
"version": "1.12.0",
"sha256": "0snwx7q5069afg31y4k20d6qy4ygdp6bz5xprj3wxkm25vmc8pkk",
"depends": ["BiocGenerics", "BiocParallel", "Matrix", "SummarizedExperiment", "abind", "lme4", "nnls", "purrr"]
},
"ISoLDE": {
"name": "ISoLDE",
"version": "1.38.0",
"sha256": "0mfijii5fa9f6n94xrwjlp0wj3d21d777rh9gbrx42smp0zqa165",
"depends": []
},
"ITALICS": {
"name": "ITALICS",
"version": "2.70.0",
"sha256": "1rvj1wnlr4534fwxm9qngn1nlmm2s3lrq15h4fh2xk0rwvshdksz",
"depends": ["DBI", "GLAD", "ITALICSData", "affxparser", "oligo", "oligoClasses", "pd_mapping50k_xba240"]
},
"IVAS": {
"name": "IVAS",
"version": "2.30.0",
"sha256": "0wzcrcq9rdi93fry36q17lm80nsrqwccqbk57sapjb2rfdbymc7c",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "BiocParallel", "GenomicFeatures", "GenomicRanges", "IRanges", "Matrix", "S4Vectors", "Seqinfo", "doParallel", "foreach", "ggfortify", "ggplot2", "lme4"]
},
"IWTomics": {
"name": "IWTomics",
"version": "1.33.0",
"sha256": "048vwzidmpzbbl3ymqc6in7xlhj2gcq35gmm88kl2knfc04i3qg5",
"depends": ["GenomicRanges", "IRanges", "KernSmooth", "S4Vectors", "fda", "gtable"]
},
"Ibex": {
"name": "Ibex",
"version": "1.0.0",
"sha256": "1x97y9ilnpq3qj2ynfblgr0xjbrq4ayimgjsbs1wbg2p09l14b7b",
"depends": ["Matrix", "SeuratObject", "SingleCellExperiment", "SummarizedExperiment", "basilisk", "immApex", "reticulate", "rlang", "scRepertoire", "tensorflow"]
},
"Icens": {
"name": "Icens",
"version": "1.82.0",
"sha256": "1w7bivsbp6l6nwvgqbx9rgw9v21mrs0lwvxwydmqgfk8z346f2ij",
"depends": ["survival"]
},
"IdeoViz": {
"name": "IdeoViz",
"version": "1.46.0",
"sha256": "13f53pp0wdmlsapj03yg7kqf5n2qpbxr7iz7p7wgv1ljv6jri0ds",
"depends": ["Biobase", "GenomeInfoDb", "GenomicRanges", "IRanges", "RColorBrewer", "rtracklayer"]
},
"IgGeneUsage": {
"name": "IgGeneUsage",
"version": "1.24.0",
"sha256": "1fdmmqs4jsh482c7q5m49p39ln8aw6v19n87sdm6l93d4rlzmj5q",
"depends": ["BH", "Rcpp", "RcppEigen", "RcppParallel", "StanHeaders", "SummarizedExperiment", "reshape2", "rstan", "rstantools", "tidyr"]
},
"InPAS": {
"name": "InPAS",
"version": "2.18.0",
"sha256": "1lw65cizag8ng79ycr0rfvbgg7913dk4297wr0mhzbli5f9jh788",
"depends": ["AnnotationDbi", "BSgenome", "Biobase", "Biostrings", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "RSQLite", "S4Vectors", "Seqinfo", "batchtools", "cleanUpdTSeq", "depmixS4", "dplyr", "flock", "future", "future_apply", "ggplot2", "limma", "magrittr", "parallelly", "plyranges", "preprocessCore", "readr", "reshape2"]
},
"InTAD": {
"name": "InTAD",
"version": "1.30.0",
"sha256": "15g67ivr7f765274lyrjjddsm0j8laj56cv1jai054cp2wms8cxk",
"depends": ["Biobase", "BiocGenerics", "GenomicRanges", "IRanges", "MultiAssayExperiment", "S4Vectors", "SummarizedExperiment", "ggplot2", "ggpubr", "mclust", "qvalue", "rtracklayer"]
},
"Informeasure": {
"name": "Informeasure",
"version": "1.20.0",
"sha256": "1l70grlg9cb781hlphbdb3g2zhni566lbfy8nhp493lshx6pjdpx",
"depends": ["entropy"]
},
"IntEREst": {
"name": "IntEREst",
"version": "1.34.0",
"sha256": "0nrzwa74nsyrcyjcalbpr05xb8njadwmh5xwmhiv5bcg8q4qbhyw",
"depends": ["BiocGenerics", "BiocParallel", "Biostrings", "DBI", "DESeq2", "DEXSeq", "GenomicAlignments", "GenomicFeatures", "GenomicFiles", "GenomicRanges", "IRanges", "RMariaDB", "Rsamtools", "S4Vectors", "SummarizedExperiment", "edgeR", "seqLogo", "seqinr", "txdbmaker"]
},
"InterCellar": {
"name": "InterCellar",
"version": "2.16.0",
"sha256": "0h7h5h11xhxq9879y4h61lk8ymwkz7nl5236blqy58mardh31ngl",
"depends": ["ComplexHeatmap", "DT", "biomaRt", "circlize", "colorspace", "colourpicker", "config", "data_table", "dendextend", "dplyr", "factoextra", "fmsb", "fs", "ggplot2", "golem", "htmltools", "htmlwidgets", "igraph", "plotly", "plyr", "readxl", "rlang", "scales", "shiny", "shinyFeedback", "shinyFiles", "shinyalert", "shinycssloaders", "shinydashboard", "signal", "tibble", "tidyr", "umap", "visNetwork", "wordcloud2"]
},
"InteractionSet": {
"name": "InteractionSet",
"version": "1.38.0",
"sha256": "0n2gncrb9ghvg4nx1dykyhq17vxzhjzj7va9r6iwpcmgyizpph5a",
"depends": ["BiocGenerics", "GenomicRanges", "IRanges", "Matrix", "Rcpp", "S4Vectors", "Seqinfo", "SummarizedExperiment"]
},
"InteractiveComplexHeatmap": {
"name": "InteractiveComplexHeatmap",
"version": "1.18.0",
"sha256": "1fqkrf3mwfxd1sf813vxx23nj1zh4la43byxiglc4adf6s8mh67p",
"depends": ["ComplexHeatmap", "GetoptLong", "IRanges", "RColorBrewer", "S4Vectors", "clisymbols", "digest", "fontawesome", "htmltools", "jsonlite", "kableExtra", "shiny", "svglite"]
},
"IntramiRExploreR": {
"name": "IntramiRExploreR",
"version": "1.32.0",
"sha256": "0yj9x04zbgh5k6d1clmmdmmj6jc9fa4492q54bjzj5kvgxrlfp55",
"depends": ["FGNet", "igraph", "knitr"]
},
"IsoBayes": {
"name": "IsoBayes",
"version": "1.8.0",
"sha256": "0xgy7gnn6gngayas864wqs86ih0jkgirz9bvaxj3jmnd0rv84maz",
"depends": ["HDInterval", "Rcpp", "RcppArmadillo", "S4Vectors", "SummarizedExperiment", "data_table", "doParallel", "doRNG", "foreach", "ggplot2", "glue", "iterators"]
},
"IsoCorrectoR": {
"name": "IsoCorrectoR",
"version": "1.28.0",
"sha256": "1h76d3pmx7fzprvkb2rs9zcdss49p0zpkq5rj4ci4rv7pzf8dp53",
"depends": ["WriteXLS", "dplyr", "magrittr", "pracma", "quadprog", "readr", "readxl", "stringr", "tibble"]
},
"IsoCorrectoRGUI": {
"name": "IsoCorrectoRGUI",
"version": "1.26.0",
"sha256": "0m79392xz8snhmc3mngpzv80dzl76j4mhpg9m09jpdj5y168mvdy",
"depends": ["IsoCorrectoR", "readxl", "tcltk2"]
},
"IsoformSwitchAnalyzeR": {
"name": "IsoformSwitchAnalyzeR",
"version": "2.10.0",
"sha256": "03xc279lhysn4lilmgi0fbx6a57xx0d31h0nyibw79qh3m14lisl",
"depends": ["BSgenome", "Biobase", "BiocGenerics", "BiocParallel", "Biostrings", "DBI", "DEXSeq", "GenomicRanges", "IRanges", "RColorBrewer", "RCurl", "S4Vectors", "Seqinfo", "SummarizedExperiment", "VennDiagram", "XVector", "dplyr", "edgeR", "futile_logger", "ggplot2", "gridExtra", "limma", "magrittr", "pfamAnalyzeR", "plyr", "pwalign", "readr", "reshape2", "rtracklayer", "satuRn", "stringr", "sva", "tibble", "tidyr", "tximeta", "tximport"]
},
"KBoost": {
"name": "KBoost",
"version": "1.18.0",
"sha256": "0wiz3s2zfypvgqxkg4qsyvcnh08cnkrsnmag97b932qx1fkxj0w7",
"depends": []
},
"KCsmart": {
"name": "KCsmart",
"version": "2.68.0",
"sha256": "1ki1khbs5gv2y4iysmf19dhxinlmrhi6xq0h1dj18avv1ng044xh",
"depends": ["BiocGenerics", "KernSmooth", "multtest", "siggenes"]
},
"KEGGREST": {
"name": "KEGGREST",
"version": "1.50.0",
"sha256": "09awamalar3w55yqcknkhvsj7zf3jwh8m5dbwc22pl5lij1w3mc5",
"depends": ["Biostrings", "httr", "png"]
},
"KEGGgraph": {
"name": "KEGGgraph",
"version": "1.70.0",
"sha256": "1d97w3q3rbnrcv0bqgns61sxxy2yynd6ibd14g4mjlfapyfa005z",
"depends": ["RCurl", "Rgraphviz", "XML", "graph"]
},
"KEGGlincs": {
"name": "KEGGlincs",
"version": "1.36.0",
"sha256": "01h49khx6fc654i55mjxpv3fy80rrqgmmczhvx18gjinrmckxzka",
"depends": ["AnnotationDbi", "KEGGREST", "KEGGgraph", "KOdata", "RJSONIO", "XML", "gtools", "hgu133a_db", "httr", "igraph", "org_Hs_eg_db", "plyr"]
},
"KinSwingR": {
"name": "KinSwingR",
"version": "1.28.0",
"sha256": "1v8ba5jbgc5q67xgj4ikkp8il0z444hywl47i3sshv7r6m86f9jv",
"depends": ["BiocParallel", "data_table", "sqldf"]
},
"KnowSeq": {
"name": "KnowSeq",
"version": "1.24.0",
"sha256": "1955z0dhb0dr4lpcyiwk4l6jg7l31bkh2ff0w1ypinrkkg7khrqd",
"depends": ["Hmisc", "R_utils", "XML", "caret", "cqn", "e1071", "edgeR", "ggplot2", "gridExtra", "httr", "jsonlite", "kernlab", "limma", "praznik", "randomForest", "reshape2", "rlist", "rmarkdown", "stringr", "sva"]
},
"LACE": {
"name": "LACE",
"version": "2.14.0",
"sha256": "09ibw1gj6hmswl5bs10h0r9n7pxqfffyfq2bcvvvn2jfsvdhhlzl",
"depends": ["DT", "Matrix", "RColorBrewer", "Rfast", "SummarizedExperiment", "biomaRt", "bsplus", "callr", "configr", "curl", "data_table", "data_tree", "doParallel", "dplyr", "forcats", "foreach", "fs", "ggplot2", "htmltools", "htmlwidgets", "igraph", "jsonlite", "logr", "purrr", "readr", "shiny", "shinyBS", "shinyFiles", "shinydashboard", "shinyjs", "shinythemes", "shinyvalidate", "sortable", "stringi", "stringr", "svglite", "tidyr"]
},
"LBE": {
"name": "LBE",
"version": "1.78.0",
"sha256": "0rbd4a3cpd19qb2f079rh28pjqanxgk8by4krdd22lj6gi97h1pg",
"depends": []
},
"LEA": {
"name": "LEA",
"version": "3.22.0",
"sha256": "14qpp18m3m9mwg2w4b7bm6218vs5ik2zk6m1wln4jd8rcn51dsxm",
"depends": []
},
"LOBSTAHS": {
"name": "LOBSTAHS",
"version": "1.36.0",
"sha256": "0bf2v7cckv34b3biqknwlpm8d9fkzbm5fkz1xvg528xwjk884m2f",
"depends": ["CAMERA", "xcms"]
},
"LOLA": {
"name": "LOLA",
"version": "1.39.1",
"sha256": "1r1c7am8qdwll7vl9lz15hx9c0srcq9y9dwl46r4wzdlfq9nwic0",
"depends": ["BiocGenerics", "GenomicRanges", "IRanges", "S4Vectors", "data_table", "reshape2"]
},
"LPE": {
"name": "LPE",
"version": "1.84.0",
"sha256": "000yaas7w28hzj61swwcy9ak6826syrhqriqqr0q0fdpgn881nhi",
"depends": []
},
"LRBaseDbi": {
"name": "LRBaseDbi",
"version": "2.20.0",
"sha256": "1j9q9h3x9chxjfbw12rf64b6m4fax1rzsx17rsxspxr59ka82q56",
"depends": ["AnnotationDbi", "Biobase", "DBI", "RSQLite"]
},
"LRcell": {
"name": "LRcell",
"version": "1.18.0",
"sha256": "0r5ck7clad67prlraj85nv90glmhwazvr8qr8qnl1nr3jby67613",
"depends": ["AnnotationHub", "BiocParallel", "ExperimentHub", "dplyr", "ggplot2", "ggrepel", "magrittr"]
},
"LedPred": {
"name": "LedPred",
"version": "1.44.0",
"sha256": "0mvac9bx7fqa7kwbm9w7snrnc19bvg01di6cx1r1hi3qg3gwybs4",
"depends": ["RCurl", "ROCR", "akima", "e1071", "ggplot2", "irr", "jsonlite", "plot3D", "plyr", "testthat"]
},
"Lheuristic": {
"name": "Lheuristic",
"version": "1.2.0",
"sha256": "16aq8vq6bpvbr1c8f11nky416ajk5rr31r316mncvpl45b0azq9m",
"depends": ["Hmisc", "MultiAssayExperiment", "energy", "ggplot2", "ggpubr"]
},
"LimROTS": {
"name": "LimROTS",
"version": "1.2.0",
"sha256": "1yb7mzz0kgpspmfkgj93aa341zd58rcvpd46iq4mrdy84g85ijym",
"depends": ["BiocParallel", "S4Vectors", "SummarizedExperiment", "dplyr", "limma", "qvalue", "stringr"]
},
"LinkHD": {
"name": "LinkHD",
"version": "1.24.0",
"sha256": "11v2sr9ascq2h1595r9qhal2p9frqin3a9frck90zch23hv59qlw",
"depends": ["MultiAssayExperiment", "cluster", "data_table", "emmeans", "ggplot2", "ggpubr", "gridExtra", "reshape2", "rio", "scales", "vegan"]
},
"Linnorm": {
"name": "Linnorm",
"version": "2.34.0",
"sha256": "0zh6pwfglgxhjp71ac0vqygazjsmg5pnwfh32i2nc6qrfp22f86d",
"depends": ["MASS", "Rcpp", "RcppArmadillo", "Rtsne", "amap", "apcluster", "ellipse", "fastcluster", "fpc", "ggdendro", "ggplot2", "gmodels", "igraph", "limma", "mclust", "statmod", "vegan", "zoo"]
},
"LipidTrend": {
"name": "LipidTrend",
"version": "1.0.0",
"sha256": "1d2kw6n0r8v2zhwnxvl14a4ri4z7418nqbbl5l2krfhd3p48v0bf",
"depends": ["MKmisc", "SummarizedExperiment", "dplyr", "ggnewscale", "ggplot2", "magrittr", "matrixTests", "rlang"]
},
"LiquidAssociation": {
"name": "LiquidAssociation",
"version": "1.64.0",
"sha256": "1wcdmhnphgb1yrvgahxk6bx9xigcrxjz2ivs1i4qfwxa8gwp9g84",
"depends": ["Biobase", "geepack", "org_Sc_sgd_db", "yeastCC"]
},
"LoomExperiment": {
"name": "LoomExperiment",
"version": "1.28.0",
"sha256": "0n0bkjl93l58glbk4llzy39b9s9yc5nq28fnr77dsl5piz4vvvqp",
"depends": ["BiocIO", "DelayedArray", "GenomicRanges", "HDF5Array", "Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "rhdf5", "stringr"]
},
"LymphoSeq": {
"name": "LymphoSeq",
"version": "1.38.0",
"sha256": "1n4dx54x5dgclc14vfcd91q3yy2dsz5jb5z4l5m2jy1csz4lr05d",
"depends": ["Biostrings", "LymphoSeqDB", "RColorBrewer", "UpSetR", "VennDiagram", "circlize", "data_table", "dplyr", "ggplot2", "ggtree", "ineq", "msa", "phangorn", "plyr", "reshape", "stringdist"]
},
"M3C": {
"name": "M3C",
"version": "1.32.0",
"sha256": "0g5lq89hh9q6lb09zpfh0z0zp5nq6h585mv1x68w8zd3y5ws5r5z",
"depends": ["Matrix", "Rtsne", "cluster", "corpcor", "doParallel", "doSNOW", "foreach", "ggplot2", "matrixcalc", "umap"]
},
"M3Drop": {
"name": "M3Drop",
"version": "1.36.0",
"sha256": "0w32rpc5v20iyix3xdcn9fvcwp1wk9p5wnilsxl0kwwi0n462vgb",
"depends": ["Hmisc", "Matrix", "RColorBrewer", "bbmle", "gplots", "irlba", "matrixStats", "numDeriv", "reldist", "scater", "statmod"]
},
"MACSQuantifyR": {
"name": "MACSQuantifyR",
"version": "1.24.0",
"sha256": "1jld2v0r3h7y6p1fx0wp84f34cv26cayhvhsq8any4wkglhp4ksa",
"depends": ["ggplot2", "ggrepel", "gridExtra", "lattice", "latticeExtra", "png", "prettydoc", "readxl", "rmarkdown", "rvest", "xml2"]
},
"MACSr": {
"name": "MACSr",
"version": "1.18.0",
"sha256": "1i64jxwqi3f4hkbhyzsybpxpiaz3lv936cxahms88i3mqq9yxrrm",
"depends": ["AnnotationHub", "ExperimentHub", "S4Vectors", "basilisk", "reticulate"]
},
"MAGAR": {
"name": "MAGAR",
"version": "1.18.0",
"sha256": "0xw3ikfv3zmzjw2agjajr715ala029lpb4g1y8qhq83l1ma06hxr",
"depends": ["HDF5Array", "RnBeads", "RnBeads_hg19", "RnBeads_hg38", "UpSetR", "argparse", "bigstatsr", "crlmm", "data_table", "doParallel", "ff", "igraph", "impute", "jsonlite", "plyr", "reshape2", "rjson", "snpStats"]
},
"MAI": {
"name": "MAI",
"version": "1.16.0",
"sha256": "14zk3x9kja7y5b8lljia2ndj4iin01j8vgq9fw3plrnh0jbrawsv",
"depends": ["S4Vectors", "SummarizedExperiment", "caret", "doParallel", "e1071", "foreach", "future", "future_apply", "missForest", "pcaMethods", "tidyverse"]
},
"MAIT": {
"name": "MAIT",
"version": "1.44.0",
"sha256": "1x4fd01jbzb6h8gwx4himwizyflzwa43cn7w1aql70bl26184hda",
"depends": ["CAMERA", "MASS", "Rcpp", "agricolae", "caret", "class", "e1071", "gplots", "pls", "plsgenomics", "xcms"]
},
"MANOR": {
"name": "MANOR",
"version": "1.82.0",
"sha256": "0bgv10b2639mcsvayxg7fv7jijvaz8nd0s0gp7lx62ddq1npw367",
"depends": ["GLAD"]
},
"MAPFX": {
"name": "MAPFX",
"version": "1.6.0",
"sha256": "1fwdy5jv44bx0sbhqgi9mm1h144d7wak6j5q97np4pir2rg4b3qj",
"depends": ["Biobase", "ComplexHeatmap", "RColorBrewer", "Rfast", "circlize", "cowplot", "e1071", "flowCore", "ggplot2", "glmnetUtils", "gtools", "iCellR", "igraph", "pbapply", "reshape2", "stringr", "uwot", "xgboost"]
},
"MAST": {
"name": "MAST",
"version": "1.36.0",
"sha256": "1q0r9288k7jz3brsprmdc3a2h6x2nji4x7pdbd5vsrz32xrjcydw",
"depends": ["Biobase", "BiocGenerics", "Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "abind", "data_table", "ggplot2", "plyr", "progress", "reshape2", "stringr"]
},
"MBASED": {
"name": "MBASED",
"version": "1.44.0",
"sha256": "07kkwigxg2d0c3vz3zf4vqim4b2gsv5fsk7z8pbcjjpbbf5dr392",
"depends": ["BiocGenerics", "BiocParallel", "GenomicRanges", "RUnit", "SummarizedExperiment"]
},
"MBAmethyl": {
"name": "MBAmethyl",
"version": "1.44.0",
"sha256": "0fcdp6jbk6bjha9jm6lp6g99yyalsdhlzwdr5jalfhddbag5bsr9",
"depends": []
},
"MBCB": {
"name": "MBCB",
"version": "1.64.0",
"sha256": "1nkjkp5gmyjsa07av154hrwb6slykzl2ls9f9y6417qhni5xznhv",
"depends": ["preprocessCore", "tcltk2"]
},
"MBECS": {
"name": "MBECS",
"version": "1.14.0",
"sha256": "1l0qgsf2jw9mjrahw79axa7pmwdrhywfzmcjdli5533i5lg4df1v",
"depends": ["Matrix", "cluster", "dplyr", "ggplot2", "gridExtra", "limma", "lme4", "lmerTest", "magrittr", "pheatmap", "phyloseq", "rmarkdown", "ruv", "sva", "tibble", "tidyr", "vegan"]
},
"MBQN": {
"name": "MBQN",
"version": "2.22.0",
"sha256": "0i1qdssiicjwxll12avyshmd6sy3rjxilxgihx9xv70wpkl8x18i",
"depends": ["BiocFileCache", "PairedData", "RCurl", "SummarizedExperiment", "ggplot2", "limma", "preprocessCore", "rappdirs", "rmarkdown", "xml2"]
},
"MBttest": {
"name": "MBttest",
"version": "1.38.0",
"sha256": "0531zxc51fp1cc9jb5c8vlvki4f5vqlgqnjag9zx5n62c2ik37fq",
"depends": ["gplots", "gtools"]
},
"MCbiclust": {
"name": "MCbiclust",
"version": "1.34.0",
"sha256": "15sr0m29nw0ypiqj4hr1axxkghyn5iclr3p9s763ixkiiqakbppy",
"depends": ["AnnotationDbi", "BiocParallel", "GGally", "GO_db", "WGCNA", "cluster", "ggplot2", "org_Hs_eg_db", "scales"]
},
"MDTS": {
"name": "MDTS",
"version": "1.30.0",
"sha256": "1j2k9hvl9h16c4vc59q4v1n9xrqiilk0rkxvj5pgy5vihh90nlnj",
"depends": ["Biostrings", "DNAcopy", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "stringr"]
},
"MEAL": {
"name": "MEAL",
"version": "1.40.0",
"sha256": "0vc1zz5x4d004k0hdglzv0cjz1y8w6n8568ns801x5dyhj651ywf",
"depends": ["Biobase", "BiocGenerics", "GenomicRanges", "Gviz", "IRanges", "MultiDataSet", "S4Vectors", "SmartSVA", "SummarizedExperiment", "ggplot2", "isva", "limma", "matrixStats", "minfi", "missMethyl", "permute", "vegan"]
},
"MEAT": {
"name": "MEAT",
"version": "1.22.0",
"sha256": "1l8v3i99wkvan1fi9d2g62d1pq5j2kvk13bf9hp4wdqqfb3rg62n",
"depends": ["RPMM", "SummarizedExperiment", "dplyr", "dynamicTreeCut", "glmnet", "impute", "minfi", "stringr", "tibble", "wateRmelon"]
},
"MEB": {
"name": "MEB",
"version": "1.24.0",
"sha256": "049bbl5hpy3c49vp7dssfg75rvbhbpg6zccnjx4dsr68nxmqqxmp",
"depends": ["SingleCellExperiment", "SummarizedExperiment", "e1071", "edgeR", "scater", "wrswoR"]
},
"MEDIPS": {
"name": "MEDIPS",
"version": "1.62.0",
"sha256": "1cwisrklpzna284vgnllpm5f950w3kq45rngjqi4mdngpj5mq1lf",
"depends": ["BSgenome", "Biostrings", "DNAcopy", "GenomicRanges", "IRanges", "Rsamtools", "biomaRt", "edgeR", "gtools", "preprocessCore", "rtracklayer"]
},
"MEDME": {
"name": "MEDME",
"version": "1.70.0",
"sha256": "13lngv3q33kirygkw7spxyn6bff58fglxzkifficxz2z9d3n2q9y",
"depends": ["Biostrings", "MASS", "drc"]
},
"MEIGOR": {
"name": "MEIGOR",
"version": "1.44.0",
"sha256": "1ybv8q9q9k84vnhy57zxisy1r8ya0555c77mcjrziqlzvw6zf1fr",
"depends": ["CNORode", "Rsolnp", "deSolve", "snowfall"]
},
"MGFM": {
"name": "MGFM",
"version": "1.44.0",
"sha256": "0bjnjpdba75wlsw9n17vywa09g5d0n741wlxmn2f61hipn6ajzgr",
"depends": ["AnnotationDbi", "annotate"]
},
"MGnifyR": {
"name": "MGnifyR",
"version": "1.6.0",
"sha256": "0p60i8xlfpz742j3ypz9vbcmn7ndkxaqfixcfvxwkj3v32yfij91",
"depends": ["BiocGenerics", "MultiAssayExperiment", "S4Vectors", "SummarizedExperiment", "TreeSummarizedExperiment", "ape", "dplyr", "httr", "mia", "plyr", "reshape2", "tidyjson", "urltools"]
},
"MICSQTL": {
"name": "MICSQTL",
"version": "1.8.0",
"sha256": "1w8pffapjy26vmwvhh58890nj8pjb2105hdf4gmfvh4zn5rvr41c",
"depends": ["BiocParallel", "S4Vectors", "SummarizedExperiment", "TCA", "TOAST", "dirmult", "ggplot2", "ggpubr", "ggridges", "glue", "magrittr", "nnls", "purrr"]
},
"MIRA": {
"name": "MIRA",
"version": "1.32.0",
"sha256": "0984rwhhz19mc3q7y4cpcz0vzfaiw6n5i4x3qv0412bmivpjp2kh",
"depends": ["Biobase", "BiocGenerics", "GenomicRanges", "IRanges", "S4Vectors", "bsseq", "data_table", "ggplot2"]
},
"MIRit": {
"name": "MIRit",
"version": "1.6.0",
"sha256": "0mk01yzi4aan6k1bxlpjaiyh3yx8h060pdhgif67hidk8yav9gzk",
"depends": ["AnnotationDbi", "BiocFileCache", "BiocParallel", "DESeq2", "MultiAssayExperiment", "Rcpp", "Rgraphviz", "edgeR", "fgsea", "genekitr", "geneset", "ggplot2", "ggpubr", "graph", "graphite", "httr", "limma", "rlang"]
},
"MLInterfaces": {
"name": "MLInterfaces",
"version": "1.90.0",
"sha256": "055ppz9d1f5l2ab11zqf1v47d1mvhb97j45wyrr89d822085nml1",
"depends": ["Biobase", "BiocGenerics", "MASS", "RColorBrewer", "Rcpp", "SummarizedExperiment", "annotate", "cluster", "fpc", "gbm", "gdata", "genefilter", "ggvis", "hwriter", "magrittr", "mlbench", "pls", "rpart", "sfsmisc", "shiny", "threejs"]
},
"MLP": {
"name": "MLP",
"version": "1.58.0",
"sha256": "0q24amdsz4zpwf3vs9xcjbba8a3q4p9g54zqacxmjpd989f1ikvd",
"depends": ["AnnotationDbi", "gplots"]
},
"MLSeq": {
"name": "MLSeq",
"version": "2.28.0",
"sha256": "0wmygr2ss4h8pjynqa32d53f46sdmglgjcmnr6vifp915f4aa3gj",
"depends": ["Biobase", "DESeq2", "SummarizedExperiment", "VennDiagram", "caret", "edgeR", "foreach", "ggplot2", "limma", "pamr", "plyr", "sSeq", "testthat", "xtable"]
},
"MMDiff2": {
"name": "MMDiff2",
"version": "1.38.0",
"sha256": "18kj3ddhqwg9x623gfp8zc4mhfhqpi95f571rrfm30hiw1p6s6vr",
"depends": ["BSgenome", "Biobase", "Biostrings", "GenomicRanges", "RColorBrewer", "Rsamtools", "S4Vectors", "ggplot2", "locfit", "shiny"]
},
"MODA": {
"name": "MODA",
"version": "1.36.0",
"sha256": "19f3nwr7czq7qw6lbmvck312w5dvk8ycad0a4n623r79xccgjs5y",
"depends": ["AMOUNTAIN", "RColorBrewer", "WGCNA", "cluster", "dynamicTreeCut", "igraph"]
},
"MOFA2": {
"name": "MOFA2",
"version": "1.20.0",
"sha256": "10a13ay9sckaajfqkx79274npiibghk98v717n0xzqxzcx6j7f79",
"depends": ["DelayedArray", "HDF5Array", "RColorBrewer", "Rtsne", "basilisk", "corrplot", "cowplot", "dplyr", "forcats", "ggplot2", "ggrepel", "magrittr", "pheatmap", "reshape2", "reticulate", "rhdf5", "stringi", "tidyr", "uwot"]
},
"MOGAMUN": {
"name": "MOGAMUN",
"version": "1.20.0",
"sha256": "18qqxgs3qy6r3rksqinck68mkcj1kh2gxrxaqlxd8xbhd0ixri1r",
"depends": ["BiocParallel", "RCy3", "RUnit", "igraph", "stringr"]
},
"MOMA": {
"name": "MOMA",
"version": "1.22.0",
"sha256": "0306d52fvb98vwaalw786vh1cb0b0swd8pkvbc642cylbb0aq9l2",
"depends": ["ComplexHeatmap", "MKmisc", "MultiAssayExperiment", "RColorBrewer", "circlize", "cluster", "dplyr", "ggplot2", "magrittr", "qvalue", "readr", "reshape2", "rlang", "stringr", "tibble", "tidyr"]
},
"MOSClip": {
"name": "MOSClip",
"version": "1.4.0",
"sha256": "1a7lkc2v2w12mzfmsakj4398xv7f8bjijsvsvczjglm24dbiijs4",
"depends": ["AnnotationDbi", "ComplexHeatmap", "FactoMineR", "Matrix", "MultiAssayExperiment", "NbClust", "RColorBrewer", "S4Vectors", "SuperExactTest", "checkmate", "circlize", "corpcor", "coxrobust", "elasticnet", "gRbase", "ggplot2", "ggplotify", "graph", "graphite", "gridExtra", "igraph", "org_Hs_eg_db", "pheatmap", "qpgraph", "reshape", "survival", "survminer"]
},
"MOSim": {
"name": "MOSim",
"version": "2.6.0",
"sha256": "16mq70imxcp1xkvz2dyvzdcm3h1k6l2s1awmlw58ipk0ycsfsx49",
"depends": ["HiddenMarkov", "IRanges", "Rcpp", "S4Vectors", "Seurat", "Signac", "cpp11", "dplyr", "edgeR", "ggplot2", "lazyeval", "matrixStats", "rlang", "scran", "stringi", "stringr", "zoo"]
},
"MPAC": {
"name": "MPAC",
"version": "1.4.0",
"sha256": "0n7cq12q5p913bca7495lnbcksqiww1vdxg0ysfl0ii39q4189ff",
"depends": ["BiocParallel", "BiocSingular", "ComplexHeatmap", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "bluster", "circlize", "data_table", "fgsea", "fitdistrplus", "ggplot2", "ggraph", "igraph", "scales", "scran", "stringr", "survival", "survminer", "viridis"]
},
"MPFE": {
"name": "MPFE",
"version": "1.46.0",
"sha256": "01v6ick1i5ix7b71glx56fxbal5ndrv5b2yq2lwzxp26wfq28kas",
"depends": []
},
"MPRAnalyze": {
"name": "MPRAnalyze",
"version": "1.28.0",
"sha256": "08c6v1lngv3wypl552n95pkhvq6an22g6wpy4dvrmwxg1layjf93",
"depends": ["BiocParallel", "SummarizedExperiment", "progress"]
},
"MSA2dist": {
"name": "MSA2dist",
"version": "1.14.0",
"sha256": "1rdqnk8l2b2p69yyvfa9ybv0ghxz2qks5rnczg10brmksf50g749",
"depends": ["Biostrings", "GenomicRanges", "IRanges", "Rcpp", "RcppThread", "ape", "doParallel", "dplyr", "foreach", "pwalign", "rlang", "seqinr", "stringi", "stringr", "tibble", "tidyr"]
},
"MSPrep": {
"name": "MSPrep",
"version": "1.19.0",
"sha256": "14n0f8rcx8fdn0w07wvbkprk3z31dfac6z8q7c50j0rp2xax9b69",
"depends": ["S4Vectors", "SummarizedExperiment", "VIM", "crmn", "dplyr", "magrittr", "missForest", "pcaMethods", "preprocessCore", "rlang", "stringr", "sva", "tibble", "tidyr"]
},
"MSnID": {
"name": "MSnID",
"version": "1.44.0",
"sha256": "1spb72pc7idn597sb8qywynf6sg306p8vbdbd0gcib1q1vinzqy0",
"depends": ["AnnotationDbi", "AnnotationHub", "Biobase", "BiocGenerics", "BiocStyle", "Biostrings", "MSnbase", "ProtGenerics", "RUnit", "R_cache", "Rcpp", "data_table", "doParallel", "dplyr", "foreach", "ggplot2", "iterators", "msmsTests", "mzID", "mzR", "purrr", "reshape2", "rlang", "stringr", "tibble", "xtable"]
},
"MSnbase": {
"name": "MSnbase",
"version": "2.36.0",
"sha256": "0k7diyzr92pjgia639w1c58km78pr199ajk0i72y4x1zbhx82c8v",
"depends": ["Biobase", "BiocGenerics", "BiocParallel", "IRanges", "MALDIquant", "MASS", "MsCoreUtils", "PSMatch", "ProtGenerics", "Rcpp", "S4Vectors", "affy", "digest", "ggplot2", "impute", "lattice", "mzID", "mzR", "pcaMethods", "plyr", "scales", "vsn"]
},
"MSstats": {
"name": "MSstats",
"version": "4.18.0",
"sha256": "084275gir4sndjwx40qn642k1jian24xkby30x1ld7b378nsnmmf",
"depends": ["MASS", "MSstatsConvert", "Rcpp", "RcppArmadillo", "checkmate", "data_table", "ggplot2", "ggrepel", "gplots", "htmltools", "limma", "lme4", "marray", "plotly", "preprocessCore", "rlang", "statmod", "survival"]
},
"MSstatsBig": {
"name": "MSstatsBig",
"version": "1.8.0",
"sha256": "12hd5a0s1yfyzxmnrhpa8xicy5232m947d6gmqy4s6pfgi0mjzbs",
"depends": ["DBI", "MSstats", "MSstatsConvert", "arrow", "dplyr", "readr", "sparklyr"]
},
"MSstatsBioNet": {
"name": "MSstatsBioNet",
"version": "1.2.0",
"sha256": "0vaxm03xhzsvirkmzblg6qw89rxgi6g7w60csh1yyp08zcqhpmli",
"depends": ["MSstats", "RCy3", "httr", "jsonlite", "r2r", "tidyr"]
},
"MSstatsConvert": {
"name": "MSstatsConvert",
"version": "1.20.0",
"sha256": "0f8rf7mniv3r30910ilhnrcaffmqddkp4n4syq9aqdn7fl630s0b",
"depends": ["Rcpp", "checkmate", "data_table", "log4r", "stringi"]
},
"MSstatsLOBD": {
"name": "MSstatsLOBD",
"version": "1.18.0",
"sha256": "00czbv3rsg3nnwhvjwl27vm9bcywmmg7y16qnwjpx7hzdsznpyik",
"depends": ["Rcpp", "ggplot2", "minpack_lm"]
},
"MSstatsLiP": {
"name": "MSstatsLiP",
"version": "1.16.0",
"sha256": "19441shsymqvxzgkj0n1ypyga43514q06cphfyrhy6zcja0zrlcs",
"depends": ["Biostrings", "MSstats", "MSstatsConvert", "MSstatsPTM", "Rcpp", "checkmate", "data_table", "dplyr", "factoextra", "ggplot2", "ggpubr", "gridExtra", "htmltools", "plotly", "purrr", "scales", "stringr", "tibble", "tidyr", "tidyverse"]
},
"MSstatsPTM": {
"name": "MSstatsPTM",
"version": "2.12.0",
"sha256": "063q6bj0caxihnx9s66s0rkw9fxfhra53hfg0bfwd1iydgf10294",
"depends": ["Biostrings", "MSstats", "MSstatsConvert", "MSstatsTMT", "Rcpp", "checkmate", "data_table", "dplyr", "ggplot2", "ggrepel", "gridExtra", "htmltools", "plotly", "stringi", "stringr"]
},
"MSstatsQC": {
"name": "MSstatsQC",
"version": "2.28.0",
"sha256": "1672v4xgb108idm82n125sm048knaahp41msmwhjrrl59v7w7nw7",
"depends": ["MSnbase", "dplyr", "ggExtra", "ggplot2", "plotly", "qcmetrics"]
},
"MSstatsQCgui": {
"name": "MSstatsQCgui",
"version": "1.30.0",
"sha256": "0n10hkb5yds7jbv2q0p59rkia210y38frc5s49bb3z0mm1mg4kbb",
"depends": ["MSstatsQC", "dplyr", "ggExtra", "gridExtra", "plotly", "shiny"]
},
"MSstatsResponse": {
"name": "MSstatsResponse",
"version": "1.0.0",
"sha256": "1cbgkszjy7ywrdl31swi31yd8ndbkdz9k5wnxylfq1yii15yal03",
"depends": ["BiocParallel", "data_table", "dplyr", "ggplot2"]
},
"MSstatsShiny": {
"name": "MSstatsShiny",
"version": "1.12.0",
"sha256": "0hrym0l2jwr0hvlnkmbxvpfyjn9jdxddyq2abvzq597liw8x5r26",
"depends": ["DT", "Hmisc", "MSstats", "MSstatsBioNet", "MSstatsConvert", "MSstatsPTM", "MSstatsTMT", "arrow", "data_table", "dplyr", "ggplot2", "ggrepel", "gplots", "htmltools", "marray", "mockery", "plotly", "readxl", "shiny", "shinyBS", "shinybusy", "shinydashboard", "shinyjs", "tidyr", "uuid"]
},
"MSstatsTMT": {
"name": "MSstatsTMT",
"version": "2.18.0",
"sha256": "020h4w7xph1b4fzmhpwg2dxz0lx87ml17h9wlbabgixys9jrs4hq",
"depends": ["MSstats", "MSstatsConvert", "checkmate", "data_table", "ggplot2", "htmltools", "limma", "lme4", "lmerTest", "plotly"]
},
"MVCClass": {
"name": "MVCClass",
"version": "1.84.0",
"sha256": "05piqhv4dfwal0kws0qvdn14r1w5i2sx6wlgqr08w1wzf1cf3wvq",
"depends": []
},
"MWASTools": {
"name": "MWASTools",
"version": "1.34.0",
"sha256": "16d1vkw3wl9mspbfgsyzwpz1pz1krlz8g9g3159qqfmh7fwlwqpm",
"depends": ["ComplexHeatmap", "KEGGREST", "KEGGgraph", "RCurl", "SummarizedExperiment", "boot", "car", "ggplot2", "glm2", "gridExtra", "igraph", "ppcor", "qvalue"]
},
"MantelCorr": {
"name": "MantelCorr",
"version": "1.80.0",
"sha256": "1da839dpy6v14fc7kgn54n107y957xw7vvv5zkw10pd1x9nmrkaz",
"depends": []
},
"MassArray": {
"name": "MassArray",
"version": "1.62.0",
"sha256": "1kzxrq4f7fi3q538zq0pbn7s28mdh0fp9l8ipgwfdyiwkhsmp4i2",
"depends": []
},
"MassSpecWavelet": {
"name": "MassSpecWavelet",
"version": "1.76.0",
"sha256": "08fv8mqhld2xpbyk4yzmb4w01jcg1fiwa14p703admwx0kfly9kv",
"depends": []
},
"MatrixGenerics": {
"name": "MatrixGenerics",
"version": "1.22.0",
"sha256": "0yjm21hnzvdffq6xg2viabh3jamb0cb0rycplbhfdqf7k8ycngdm",
"depends": ["matrixStats"]
},
"MatrixQCvis": {
"name": "MatrixQCvis",
"version": "1.18.0",
"sha256": "1v2vx6vlk6s7i1zb3h24wq3hnqffi9fwf93fibcwsfzl2kdwf9bi",
"depends": ["ComplexHeatmap", "DT", "ExperimentHub", "Hmisc", "MASS", "Rtsne", "SummarizedExperiment", "UpSetR", "dplyr", "ggplot2", "htmlwidgets", "impute", "imputeLCMD", "limma", "pcaMethods", "plotly", "proDA", "rlang", "rmarkdown", "shiny", "shinydashboard", "shinyhelper", "shinyjs", "sva", "tibble", "tidyr", "umap", "vsn"]
},
"MatrixRider": {
"name": "MatrixRider",
"version": "1.42.0",
"sha256": "11nqdvaxnf49i57lf3gd3xcni6ybhjxsxsm0m1w0xl1isgvc451m",
"depends": ["Biostrings", "IRanges", "S4Vectors", "TFBSTools", "XVector"]
},
"MeSHDbi": {
"name": "MeSHDbi",
"version": "1.46.0",
"sha256": "1cxigmicaxqjrg8n36v2db4a806j8qx3iank7r17hxgniq5q8zh4",
"depends": ["AnnotationDbi", "Biobase", "RSQLite"]
},
"MeasurementError_cor": {
"name": "MeasurementError.cor",
"version": "1.82.0",
"sha256": "1hkpa8wisx29cz8n5m1w0vb7nbz1vbxpca6m3zja245zi6ifqbz9",
"depends": []
},
"Mergeomics": {
"name": "Mergeomics",
"version": "1.38.0",
"sha256": "0gvcvxh7aycmq5svwmn9vxjibcgpksv28irgal2m101vsjngmzx8",
"depends": []
},
"MesKit": {
"name": "MesKit",
"version": "1.20.0",
"sha256": "1x1s2ylbjd6mbq6498sj992ik44ipyi4rpnwwd4nj3q212dcx9wf",
"depends": ["AnnotationDbi", "Biostrings", "ComplexHeatmap", "IRanges", "RColorBrewer", "S4Vectors", "ape", "circlize", "cowplot", "data_table", "dplyr", "ggplot2", "ggrepel", "ggridges", "mclust", "phangorn", "pracma", "tidyr"]
},
"MetCirc": {
"name": "MetCirc",
"version": "1.40.0",
"sha256": "15zwkgwqnpndlpw9pqd5mkfbmcdb1aa331fvkkhxzdgcd5zq7a49",
"depends": ["MsCoreUtils", "S4Vectors", "Spectra", "amap", "circlize", "ggplot2", "scales", "shiny"]
},
"MetID": {
"name": "MetID",
"version": "1.28.0",
"sha256": "1xh0y6k6ik9nzy1wrzfr8b255194b26jibflgdi4vzn3hbm2z30p",
"depends": ["ChemmineR", "Matrix", "devtools", "igraph", "stringr"]
},
"MetNet": {
"name": "MetNet",
"version": "1.28.0",
"sha256": "0wj31qhyg0yn1cviprn3y6411rgl5sj0ns4iin3qc53qf4ypjspc",
"depends": ["BiocParallel", "GENIE3", "GeneNet", "S4Vectors", "SummarizedExperiment", "bnlearn", "corpcor", "dplyr", "ggplot2", "parmigene", "psych", "rlang", "stabs", "tibble", "tidyr"]
},
"MetaCyto": {
"name": "MetaCyto",
"version": "1.32.0",
"sha256": "1km53r657jfjipiq88nir9s6qwdl4c1mw8mldhimdy8hm6kf7mqx",
"depends": ["FlowSOM", "cluster", "fastcluster", "flowCore", "ggplot2", "metafor", "tidyr"]
},
"MetaDICT": {
"name": "MetaDICT",
"version": "1.0.0",
"sha256": "00afs37df59wc0yjxd3diskcxfyc2zjcv5nycvr5sv8bizlh0cx5",
"depends": ["RANN", "ape", "cluster", "ecodist", "edgeR", "ggplot2", "ggpubr", "igraph", "matrixStats", "vegan", "viridis"]
},
"MetaNeighbor": {
"name": "MetaNeighbor",
"version": "1.29.0",
"sha256": "0fvsnwwpvwbdcq7lgbb2jq9n6scr33ip3s3z14v6nxm7zmf6i5bn",
"depends": ["Matrix", "RColorBrewer", "SingleCellExperiment", "SummarizedExperiment", "beanplot", "dplyr", "ggplot2", "gplots", "igraph", "matrixStats", "tibble", "tidyr"]
},
"MetaPhOR": {
"name": "MetaPhOR",
"version": "1.12.0",
"sha256": "1lwb3ksf0yrdwzv9b0azcnn2fng4vrkwls3ds8bqaq6bn2n3pkxk",
"depends": ["RCy3", "RecordLinkage", "clusterProfiler", "ggplot2", "ggrepel", "pheatmap", "stringr"]
},
"MetaboAnnotation": {
"name": "MetaboAnnotation",
"version": "1.14.0",
"sha256": "07b72g2l2j16a3q6cl3fnpjk2v0iw92c1jb21hyhrs9lxvalsvqz",
"depends": ["AnnotationHub", "BiocGenerics", "BiocParallel", "CompoundDb", "MetaboCoreUtils", "MsCoreUtils", "ProtGenerics", "QFeatures", "S4Vectors", "Spectra", "SummarizedExperiment"]
},
"MetaboCoreUtils": {
"name": "MetaboCoreUtils",
"version": "1.18.0",
"sha256": "1ddcbr3lhi6pbb5mv2h41vgv26z9jncw1wbw5iq8dqhk09f9k1kn",
"depends": ["BiocParallel", "MsCoreUtils"]
},
"MetaboDynamics": {
"name": "MetaboDynamics",
"version": "2.0.0",
"sha256": "1xba89ira24vlidx9cf0rp6jjc3kfl4b324n8z1bpixzsnjqrw7h",
"depends": ["BH", "KEGGREST", "Rcpp", "RcppEigen", "RcppParallel", "S4Vectors", "StanHeaders", "SummarizedExperiment", "ape", "dplyr", "dynamicTreeCut", "ggplot2", "ggtree", "patchwork", "rlang", "rstan", "rstantools", "stringr", "tidyr"]
},
"MetaboSignal": {
"name": "MetaboSignal",
"version": "1.40.0",
"sha256": "07lxxxxn3h2ilrg436dgq0754s1xkkz9md91j89jwv0h4kpr22vj",
"depends": ["AnnotationDbi", "EnsDb_Hsapiens_v75", "KEGGREST", "KEGGgraph", "MWASTools", "RCurl", "biomaRt", "hpar", "igraph", "mygene", "org_Hs_eg_db"]
},
"MethPed": {
"name": "MethPed",
"version": "1.38.0",
"sha256": "18ld9iq0kxzc2igran2jr8w3jrj1k73p5i0lx8dgl58kdbg18ycj",
"depends": ["Biobase", "randomForest"]
},
"MethReg": {
"name": "MethReg",
"version": "1.20.0",
"sha256": "049cs12928mfmllqrrywmdk956ai7wsgxf4k093mh810g3qg1fwb",
"depends": ["AnnotationHub", "DelayedArray", "ExperimentHub", "GenomicRanges", "IRanges", "JASPAR2024", "MASS", "Matrix", "RSQLite", "S4Vectors", "SummarizedExperiment", "TFBSTools", "dplyr", "ggplot2", "ggpubr", "openxlsx", "plyr", "progress", "pscl", "readr", "rlang", "sesame", "sesameData", "sfsmisc", "stringr", "tibble", "tidyr"]
},
"MethTargetedNGS": {
"name": "MethTargetedNGS",
"version": "1.42.0",
"sha256": "0mjq3q8q43p5gni40z5xlkhgpdxnphwi8xjrqc9gjwwqbra5986l",
"depends": ["Biostrings", "gplots", "pwalign", "seqinr", "stringr"]
},
"MethylAid": {
"name": "MethylAid",
"version": "1.44.0",
"sha256": "1gg6wy7g583i348mvd9qww5pnjkn8g0ckkdkwf463kgs12483n2n",
"depends": ["Biobase", "BiocGenerics", "BiocParallel", "RColorBrewer", "SummarizedExperiment", "ggplot2", "gridBase", "hexbin", "matrixStats", "minfi", "shiny"]
},
"MethylMix": {
"name": "MethylMix",
"version": "2.40.0",
"sha256": "1wdmq8jdnd37wrasdrfmy6xskpw2h6w2g3a514f0zn3m3fc7wpqv",
"depends": ["RColorBrewer", "RCurl", "RPMM", "R_matlab", "data_table", "digest", "foreach", "ggplot2", "impute", "limma"]
},
"MethylSeekR": {
"name": "MethylSeekR",
"version": "1.50.0",
"sha256": "00i0g5xxdd7xf268nqsl76im6d5za3h9apx2dsdyvjdrkn8shg98",
"depends": ["BSgenome", "GenomeInfoDb", "GenomicRanges", "IRanges", "geneplotter", "mhsmm", "rtracklayer"]
},
"Mfuzz": {
"name": "Mfuzz",
"version": "2.70.0",
"sha256": "0fjdfhj340fbv9m18a5hlsd8g7n9zdrn4h6h4fsa3pmzmj06x7l5",
"depends": ["Biobase", "e1071", "tkWidgets"]
},
"MiChip": {
"name": "MiChip",
"version": "1.64.0",
"sha256": "0bjvg2jyfif03vx53xznhdnmx2s4nfv05l6kbq907rv84ji692b8",
"depends": ["Biobase"]
},
"MiPP": {
"name": "MiPP",
"version": "1.82.0",
"sha256": "0y8dcf69c39capj45j276dhlcjxwvxny5bb5w4w9gp2l4gm3nraq",
"depends": ["Biobase", "MASS", "e1071"]
},
"MiRaGE": {
"name": "MiRaGE",
"version": "1.52.0",
"sha256": "0zl37d9adbra11ma4pra78w76vfdli1ljs8sv729dyn2h2vmjh1q",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "BiocManager", "S4Vectors"]
},
"MicrobiomeProfiler": {
"name": "MicrobiomeProfiler",
"version": "1.16.0",
"sha256": "0qqv2vkag5a3rp2wcf3kxk99dwymd0p828g12v301d65g5jzlp93",
"depends": ["DT", "clusterProfiler", "config", "enrichplot", "ggplot2", "golem", "gson", "htmltools", "magrittr", "shiny", "shinyWidgets", "shinycustomloader", "yulab_utils"]
},
"MicrobiotaProcess": {
"name": "MicrobiotaProcess",
"version": "1.22.0",
"sha256": "0lf3z2pcvvy905qanm2a7ryr2kb74rnghmn2ghq0669hqgdihh0x",
"depends": ["Biostrings", "MASS", "SummarizedExperiment", "ape", "cli", "coin", "data_table", "dplyr", "dtplyr", "foreach", "ggfun", "ggplot2", "ggrepel", "ggsignif", "ggstar", "ggtree", "ggtreeExtra", "magrittr", "patchwork", "pillar", "plyr", "rlang", "tibble", "tidyr", "tidyselect", "tidytree", "treeio", "vegan", "zoo"]
},
"MineICA": {
"name": "MineICA",
"version": "1.49.0",
"sha256": "0fnlyrx6a1m8l2zqphlkdsqdkcl4h5mv2fan0ig23k0qcv7cxyzs",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "GOstats", "Hmisc", "JADE", "RColorBrewer", "Rgraphviz", "annotate", "biomaRt", "cluster", "colorspace", "fastICA", "foreach", "fpc", "ggplot2", "graph", "gtools", "igraph", "lumi", "lumiHumanAll_db", "marray", "mclust", "plyr", "scales", "xtable"]
},
"MinimumDistance": {
"name": "MinimumDistance",
"version": "1.54.0",
"sha256": "15s7a7w78p29a4a8p408r887pnl3l6wcsj1zjh0hjwvirn13v4hi",
"depends": ["Biobase", "BiocGenerics", "DNAcopy", "GenomicRanges", "IRanges", "MatrixGenerics", "S4Vectors", "Seqinfo", "SummarizedExperiment", "VanillaICE", "data_table", "ff", "foreach", "lattice", "matrixStats", "oligoClasses"]
},
"ModCon": {
"name": "ModCon",
"version": "1.18.0",
"sha256": "0vg663nhmj1xmxh7bi5v9z0rcps3bl7qs6v6dd7wp6ybv8vkr5g1",
"depends": ["data_table"]
},
"Modstrings": {
"name": "Modstrings",
"version": "1.26.0",
"sha256": "1apgx7jf02y7v3rd36y3r3fsl41pg2ajxq9cmi4nrnpf0s1jq1f2",
"depends": ["BiocGenerics", "Biostrings", "GenomicRanges", "IRanges", "S4Vectors", "XVector", "crayon", "stringi", "stringr"]
},
"MoleculeExperiment": {
"name": "MoleculeExperiment",
"version": "1.10.0",
"sha256": "0g30rqj98dagyxl7wl84imszrb7fh0c0cd2g41x1spviirwga1zm",
"depends": ["BiocParallel", "EBImage", "Matrix", "S4Vectors", "SpatialExperiment", "cli", "data_table", "dplyr", "ggplot2", "magrittr", "purrr", "rhdf5", "rjson", "rlang", "terra"]
},
"Moonlight2R": {
"name": "Moonlight2R",
"version": "1.8.0",
"sha256": "0x8w3qgm0k7pq2kyc7y6nqsbdfwqg68ki6bm1vvgx0wpgy9zza86",
"depends": ["AnnotationHub", "Biobase", "BiocGenerics", "ComplexHeatmap", "DOSE", "EpiMix", "ExperimentHub", "GEOquery", "GenomicRanges", "HiveR", "RColorBrewer", "RISmed", "circlize", "clusterProfiler", "data_table", "doParallel", "dplyr", "easyPubMed", "foreach", "fuzzyjoin", "ggplot2", "gplots", "magrittr", "org_Hs_eg_db", "parmigene", "purrr", "qpdf", "randomForest", "readr", "rlang", "rtracklayer", "seqminer", "stringr", "tibble", "tidyHeatmap", "tidyr", "withr"]
},
"MoonlightR": {
"name": "MoonlightR",
"version": "1.36.0",
"sha256": "1mlg7aczp8wafdmwjq9znra80w8h469dvsiqqpf5bhhbq8lax7qp",
"depends": ["Biobase", "DOSE", "GEOquery", "HiveR", "RColorBrewer", "RISmed", "SummarizedExperiment", "TCGAbiolinks", "circlize", "clusterProfiler", "doParallel", "foreach", "gplots", "limma", "parmigene", "randomForest"]
},
"Motif2Site": {
"name": "Motif2Site",
"version": "1.14.0",
"sha256": "1jgdh9gqlm0lydgk1l1946fhnb2ma8v63841bzaj3bw8j4876vjh",
"depends": ["BSgenome", "BiocGenerics", "Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "MASS", "S4Vectors", "edgeR", "mixtools"]
},
"MotifDb": {
"name": "MotifDb",
"version": "1.52.0",
"sha256": "01ps2pn7qv4v9f88z74mbj4293yamaa0mssaaai92knjvzc8fs2w",
"depends": ["BiocGenerics", "Biostrings", "GenomicRanges", "IRanges", "S4Vectors", "rtracklayer", "splitstackshape"]
},
"MotifPeeker": {
"name": "MotifPeeker",
"version": "1.2.0",
"sha256": "0s16b0zpksm52w6kszhah6shrh69wxww847qq1fv9xrmrg8zryax",
"depends": ["BSgenome", "BiocFileCache", "BiocParallel", "Biostrings", "DT", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "dplyr", "ggplot2", "heatmaply", "htmltools", "htmlwidgets", "memes", "plotly", "purrr", "rmarkdown", "rtracklayer", "tidyr", "universalmotif", "viridis"]
},
"MouseFM": {
"name": "MouseFM",
"version": "1.20.0",
"sha256": "1kyagqg0rs5pzqqjn8fsdbmkaj9vzq6jqvrmyjswibxdasgy8vwm",
"depends": ["GenomicRanges", "IRanges", "Seqinfo", "biomaRt", "curl", "data_table", "dplyr", "ggplot2", "gtools", "httr", "jsonlite", "reshape2", "rlist", "scales", "tidyr"]
},
"MsBackendMassbank": {
"name": "MsBackendMassbank",
"version": "1.18.0",
"sha256": "06ac38fshnn1ra0k3dmmrlsc6036sx5kzb84h8j9k1j336ra3lm1",
"depends": ["BiocParallel", "DBI", "IRanges", "MsCoreUtils", "ProtGenerics", "S4Vectors", "Spectra"]
},
"MsBackendMetaboLights": {
"name": "MsBackendMetaboLights",
"version": "1.4.0",
"sha256": "1iniryzmqwbkwdxrax432hzndda81g5a7jylkm8579n872rl24cj",
"depends": ["BiocFileCache", "ProtGenerics", "S4Vectors", "Spectra", "curl", "progress"]
},
"MsBackendMgf": {
"name": "MsBackendMgf",
"version": "1.18.0",
"sha256": "0hycd0jj3bc5h3lcgxpm6ysy2mzk3jp0rxq1hrgyqpz1s9zigbsy",
"depends": ["BiocParallel", "IRanges", "MsCoreUtils", "ProtGenerics", "S4Vectors", "Spectra"]
},
"MsBackendMsp": {
"name": "MsBackendMsp",
"version": "1.14.0",
"sha256": "1mqrn6kq6hrnymv80ypls7mmpzjh0zy3b44d1ayikm5ilyg57dki",
"depends": ["BiocParallel", "IRanges", "MsCoreUtils", "ProtGenerics", "S4Vectors", "Spectra"]
},
"MsBackendRawFileReader": {
"name": "MsBackendRawFileReader",
"version": "1.16.0",
"sha256": "1169db99imv14brygihhfmb1qc3cmhmlwqi5snj5fc8vk46y59c1",
"depends": ["BiocParallel", "IRanges", "MsCoreUtils", "ProtGenerics", "S4Vectors", "Spectra", "rawrr"]
},
"MsBackendSql": {
"name": "MsBackendSql",
"version": "1.10.0",
"sha256": "1h0pbk4wkiri36qdmln7v0wglgpx5lhbnrv6q903j2x8nhjhgffx",
"depends": ["BiocGenerics", "BiocParallel", "DBI", "IRanges", "MsCoreUtils", "ProtGenerics", "S4Vectors", "Spectra", "data_table", "fastmatch", "progress", "stringi"]
},
"MsCoreUtils": {
"name": "MsCoreUtils",
"version": "1.21.0",
"sha256": "1lckbd96589vsmyy6prqijxafwiwx3mnm9c1jlw6dbxivfzmk3n7",
"depends": ["MASS", "Rcpp", "S4Vectors", "clue"]
},
"MsDataHub": {
"name": "MsDataHub",
"version": "1.10.0",
"sha256": "09rfj583b1vz3p328pnlrzj7mxg6804ia1q84p9y5pvzcb0z17fv",
"depends": ["ExperimentHub"]
},
"MsExperiment": {
"name": "MsExperiment",
"version": "1.12.0",
"sha256": "1braagzs450sxbh29rdh0dck7pwi49wd45rx3j36fw4720hgcilb",
"depends": ["BiocGenerics", "DBI", "IRanges", "ProtGenerics", "QFeatures", "S4Vectors", "Spectra", "SummarizedExperiment"]
},
"MsFeatures": {
"name": "MsFeatures",
"version": "1.18.0",
"sha256": "14cm8mmqgj1pf96fdkwasr8zfpyrpz9p8kfnq5n3srh9qnfsvyk7",
"depends": ["MsCoreUtils", "ProtGenerics", "SummarizedExperiment"]
},
"MsQuality": {
"name": "MsQuality",
"version": "1.10.0",
"sha256": "07cb36mrz11r6hpl5cwk3a5myagmslxik0jis8rxbsihkmilpb2r",
"depends": ["BiocParallel", "MsExperiment", "ProtGenerics", "Spectra", "ggplot2", "htmlwidgets", "msdata", "plotly", "rlang", "rmzqc", "shiny", "shinydashboard", "stringr", "tibble", "tidyr"]
},
"MuData": {
"name": "MuData",
"version": "1.14.0",
"sha256": "0b6289ladkm5c70i4rkw3hc7kxf038n3ryjs9fr44rb1q4mq940n",
"depends": ["DelayedArray", "Matrix", "MultiAssayExperiment", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "rhdf5"]
},
"Mulcom": {
"name": "Mulcom",
"version": "1.60.0",
"sha256": "1wy30yl3wl1a42mn447dsrlsswi55y00f3rrzpfyv85ap8sx2imw",
"depends": ["Biobase", "fields"]
},
"MultiAssayExperiment": {
"name": "MultiAssayExperiment",
"version": "1.36.0",
"sha256": "1idng7dc4fx0zn51r43vbxyyl2011y5bznzm4id8nv52zpknd753",
"depends": ["Biobase", "BiocBaseUtils", "BiocGenerics", "DelayedArray", "GenomicRanges", "IRanges", "MatrixGenerics", "S4Vectors", "SummarizedExperiment", "tidyr"]
},
"MultiBaC": {
"name": "MultiBaC",
"version": "1.20.0",
"sha256": "1cwf0aja5qydbhc7iws09hd9wc4jm98fj0snai59ymgb7vrs08zb",
"depends": ["Matrix", "MultiAssayExperiment", "ggplot2", "pcaMethods", "plotrix", "ropls"]
},
"MultiDataSet": {
"name": "MultiDataSet",
"version": "1.38.0",
"sha256": "06dgh6zvcz6d1yghys126mkjxmibdf4asn1n2ddmf8bxk500zl5i",
"depends": ["Biobase", "BiocGenerics", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment", "ggplot2", "ggrepel", "limma", "qqman"]
},
"MultiMed": {
"name": "MultiMed",
"version": "2.32.0",
"sha256": "0pn5bavnq3gsyln89p6zrwn44147c9wjpkc04drk65hv9329yh3q",
"depends": []
},
"MultiRNAflow": {
"name": "MultiRNAflow",
"version": "1.8.0",
"sha256": "0h4jy154jq7g76a7bnirmpi7rjzzfdslw54sdzzrd7shr3amg4wd",
"depends": ["Biobase", "ComplexHeatmap", "DESeq2", "FactoMineR", "Mfuzz", "S4Vectors", "SummarizedExperiment", "UpSetR", "factoextra", "ggalluvial", "ggplot2", "ggplotify", "ggrepel", "gprofiler2", "plot3D", "plot3Drgl", "reshape2", "rlang"]
},
"MultimodalExperiment": {
"name": "MultimodalExperiment",
"version": "1.10.0",
"sha256": "1dv4bq17p1jwk4ympjd7902wmbqp641s87c8kdkr0c7qx5q7ibdj",
"depends": ["BiocGenerics", "IRanges", "MultiAssayExperiment", "S4Vectors"]
},
"MungeSumstats": {
"name": "MungeSumstats",
"version": "1.18.0",
"sha256": "0g2995z6gj0xrn45bvjpvnlp9cd9iwxq8hwvl4lfvaij1qqlv7i7",
"depends": ["BSgenome", "Biostrings", "GenomeInfoDb", "GenomicRanges", "IRanges", "RCurl", "R_utils", "VariantAnnotation", "data_table", "dplyr", "ieugwasr", "rtracklayer", "stringr"]
},
"MutationalPatterns": {
"name": "MutationalPatterns",
"version": "3.19.1",
"sha256": "1y7yxricvivg3ds3jacwf5qb366xvzw8sff9wddigz8p5kyzs7f6",
"depends": ["BSgenome", "BiocGenerics", "Biostrings", "GenomeInfoDb", "GenomicRanges", "IRanges", "NMF", "RColorBrewer", "S4Vectors", "Seqinfo", "VariantAnnotation", "cowplot", "dplyr", "ggalluvial", "ggdendro", "ggplot2", "magrittr", "pracma", "purrr", "stringr", "tibble", "tidyr"]
},
"NADfinder": {
"name": "NADfinder",
"version": "1.34.0",
"sha256": "19gg4g815zgpphamvnyg6xk2jz47gwb49rr6inqz8l304a6ibsca",
"depends": ["ATACseqQC", "BiocGenerics", "EmpiricalBrownsMethod", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "SummarizedExperiment", "baseline", "corrplot", "csaw", "limma", "metap", "rtracklayer", "signal", "trackViewer"]
},
"NBAMSeq": {
"name": "NBAMSeq",
"version": "1.26.0",
"sha256": "0n19b7i3j0465gn41jyrdilgp6rwr3anzfa79l62z4l0ywkjld6r",
"depends": ["BiocParallel", "DESeq2", "S4Vectors", "SummarizedExperiment", "genefilter", "mgcv"]
},
"NCIgraph": {
"name": "NCIgraph",
"version": "1.58.0",
"sha256": "1vaf53lx2nrcnk45gbwr5whvy9a3ma2zdb8lqym1jp9hs1s1gn9q",
"depends": ["KEGGgraph", "RBGL", "RCy3", "R_oo", "graph"]
},
"NOISeq": {
"name": "NOISeq",
"version": "2.54.0",
"sha256": "05398q8cqywbvrqgzp9gjyjkv7dlq2v8f3w9rgz60jwma76vdxdw",
"depends": ["Biobase", "Matrix"]
},
"NPARC": {
"name": "NPARC",
"version": "1.22.0",
"sha256": "0iqmyf0bambl9dp1kypvcxfglvpryy61925zf9hhkapv7wj90v4j",
"depends": ["BiocParallel", "MASS", "broom", "dplyr", "magrittr", "rlang", "tidyr"]
},
"NTW": {
"name": "NTW",
"version": "1.60.0",
"sha256": "1rsg8294jr134gv01f7y2542ld595740agazr0661vsd18p0any5",
"depends": ["mvtnorm"]
},
"NanoMethViz": {
"name": "NanoMethViz",
"version": "3.6.0",
"sha256": "1rksk701jpck7ahphb11qrrz9a4hfc59sqlp8yprbjl9cz1pim69",
"depends": ["AnnotationDbi", "BiocSingular", "Biostrings", "GenomicRanges", "IRanges", "R_utils", "Rcpp", "Rsamtools", "S4Vectors", "SummarizedExperiment", "assertthat", "bsseq", "cli", "cpp11", "dbscan", "dplyr", "e1071", "forcats", "fs", "ggplot2", "ggrastr", "glue", "limma", "patchwork", "purrr", "readr", "rlang", "scales", "stringr", "tibble", "tidyr", "withr"]
},
"NanoStringDiff": {
"name": "NanoStringDiff",
"version": "1.40.0",
"sha256": "0mcnch09brr8c1kfmq6scv04gdxz02a0s8zi1v6xmqr151abkwng",
"depends": ["Biobase", "Rcpp", "matrixStats"]
},
"NanoStringNCTools": {
"name": "NanoStringNCTools",
"version": "1.18.0",
"sha256": "0l9rbm6b5k13jbf1jmwyiscg81rwkmxir4vidq1pdw53gmxf4mnx",
"depends": ["Biobase", "BiocGenerics", "Biostrings", "IRanges", "RColorBrewer", "S4Vectors", "ggbeeswarm", "ggiraph", "ggplot2", "ggthemes", "pheatmap"]
},
"NanoTube": {
"name": "NanoTube",
"version": "1.16.0",
"sha256": "0v4sxb205in1jrr79rvmcw8qp9pa0azb44crl1kmc9kvf9sh0p03",
"depends": ["Biobase", "fgsea", "ggplot2", "limma", "reshape"]
},
"Nebulosa": {
"name": "Nebulosa",
"version": "1.20.0",
"sha256": "0xb2xj3rj2hqaz1hhsijk83n3qvwp646gj3nx6y8s6k6kda3mwvr",
"depends": ["Matrix", "SeuratObject", "SingleCellExperiment", "SummarizedExperiment", "ggplot2", "ggrastr", "ks", "patchwork"]
},
"NetActivity": {
"name": "NetActivity",
"version": "1.12.0",
"sha256": "0ckjlx4ap2k8jk6ji3mg9dkkyqjyk5rw32p4qcpi0ysj0jvz020q",
"depends": ["DESeq2", "DelayedArray", "DelayedMatrixStats", "NetActivityData", "SummarizedExperiment", "airway"]
},
"NetPathMiner": {
"name": "NetPathMiner",
"version": "1.46.0",
"sha256": "18fvsd8nly7c35370id6ffx0skb82cp78si4qj889sdfgprh1haf",
"depends": ["igraph"]
},
"NetSAM": {
"name": "NetSAM",
"version": "1.50.0",
"sha256": "19jxwwd3ysd2b4h14rxybhf2m2bfs78szmjs36fqbwxb2ms8h0za",
"depends": ["AnnotationDbi", "DBI", "GO_db", "R2HTML", "WGCNA", "biomaRt", "doParallel", "foreach", "igraph", "seriation", "survival"]
},
"NewWave": {
"name": "NewWave",
"version": "1.20.0",
"sha256": "07yyj18891kkw5mim6gbc0vzadkafyqazhxrhbqmixr0pa29s7qr",
"depends": ["BiocSingular", "DelayedArray", "Matrix", "SharedObject", "SingleCellExperiment", "SummarizedExperiment", "irlba"]
},
"NoRCE": {
"name": "NoRCE",
"version": "1.22.0",
"sha256": "1sijrvp5l8bqn4ydklqknfgl1ikdj9lw9yzj3f3pdajgb644dmcc",
"depends": ["AnnotationDbi", "DBI", "GO_db", "GenomicFeatures", "GenomicRanges", "IRanges", "KEGGREST", "RCurl", "RSQLite", "S4Vectors", "Seqinfo", "SummarizedExperiment", "biomaRt", "dbplyr", "dplyr", "ggplot2", "igraph", "png", "rWikiPathways", "reactome_db", "readr", "reshape2", "rtracklayer", "stringr", "tidyr"]
},
"NormalyzerDE": {
"name": "NormalyzerDE",
"version": "1.28.0",
"sha256": "0xdgkvgh6m607m074kqqm2ajr7hagc0qdhsp2bwqkhr5kryhpdjb",
"depends": ["MASS", "SummarizedExperiment", "ape", "car", "ggforce", "ggplot2", "limma", "matrixStats", "preprocessCore", "vsn"]
},
"NormqPCR": {
"name": "NormqPCR",
"version": "1.56.0",
"sha256": "002jxkrqbm09xbaaacr3gd50c6pndsgqyfppg0kfyd4grhl3v0p5",
"depends": ["Biobase", "RColorBrewer", "ReadqPCR", "qpcR"]
},
"NuPoP": {
"name": "NuPoP",
"version": "2.18.0",
"sha256": "0v6fmvv35mhz4w3vdz6rlj13llrzrzgclc7aaa2pqh277cnpvsbv",
"depends": []
},
"OCplus": {
"name": "OCplus",
"version": "1.84.0",
"sha256": "1xqlb22qaiqmf73hqzwb8xqimc8nxsi6qr12bbdn8452izx32syv",
"depends": ["interp", "multtest"]
},
"OGRE": {
"name": "OGRE",
"version": "1.14.0",
"sha256": "1s32r0gjqpg7hkysz83m7i2xm3nxi9nl7pfpdqjlxxpcz0n67gnx",
"depends": ["AnnotationHub", "DT", "GenomeInfoDb", "GenomicRanges", "Gviz", "IRanges", "S4Vectors", "Seqinfo", "assertthat", "data_table", "ggplot2", "rtracklayer", "shiny", "shinyBS", "shinyFiles", "shinydashboard", "tidyr"]
},
"OLIN": {
"name": "OLIN",
"version": "1.88.0",
"sha256": "1vd4c6y7csfcmlsdgzq7jq1lnp7pffbbppkby0y137jh7lzr1sjf",
"depends": ["limma", "locfit", "marray"]
},
"OLINgui": {
"name": "OLINgui",
"version": "1.84.0",
"sha256": "1x2lmcgfccqxnf1zpyczkhh8vpw6p6zpp1rqp1048b7mqahpsddw",
"depends": ["OLIN", "marray", "tkWidgets", "widgetTools"]
},
"OMICsPCA": {
"name": "OMICsPCA",
"version": "1.28.0",
"sha256": "0qnk5ayhmxb99zbmpjp0pnmk6fbx5siqlafvqadinrjpm2nhihqr",
"depends": ["FactoMineR", "HelloRanges", "IRanges", "MASS", "MultiAssayExperiment", "NbClust", "OMICsPCAdata", "PerformanceAnalytics", "Seqinfo", "clValid", "cluster", "corrplot", "cowplot", "data_table", "factoextra", "fpc", "ggplot2", "kableExtra", "magick", "pdftools", "reshape2", "rgl", "rmarkdown", "rtracklayer", "tidyr"]
},
"OPWeight": {
"name": "OPWeight",
"version": "1.32.0",
"sha256": "14r3v31zddcaa8xbf09v4fs11iwsqjwjqb09hy9v46bgbmgy6bk3",
"depends": ["MASS", "qvalue", "tibble"]
},
"ORFhunteR": {
"name": "ORFhunteR",
"version": "1.18.0",
"sha256": "00qjdd3lxsjglq9lhaf15q64gprf9dlwdx4p2a5g5qdghb2fpscx",
"depends": ["BSgenome_Hsapiens_UCSC_hg38", "Biostrings", "Peptides", "Rcpp", "data_table", "randomForest", "rtracklayer", "stringr", "xfun"]
},
"ORFik": {
"name": "ORFik",
"version": "1.30.0",
"sha256": "122ssy6zdibc5zshrizg45l5943g54ahhr8m9x1niz2gfv1639vv",
"depends": ["AnnotationDbi", "BSgenome", "BiocFileCache", "BiocGenerics", "BiocParallel", "Biostrings", "DESeq2", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "R_utils", "Rcpp", "Rsamtools", "S4Vectors", "SummarizedExperiment", "XML", "biomaRt", "biomartr", "cowplot", "data_table", "fst", "ggplot2", "gridExtra", "httr", "jsonlite", "qs", "rtracklayer", "txdbmaker", "withr", "xml2"]
},
"OSAT": {
"name": "OSAT",
"version": "1.58.0",
"sha256": "0k92c8vyjl4cpdiizy5ffq05prwdp6nindxl3w26lnh3m65p59va",
"depends": []
},
"OSTA_data": {
"name": "OSTA.data",
"version": "1.1.2",
"sha256": "0bxhjk8vyz1ylni0wkm6pqhdc6g98ak1n1fvcrr5zrm30vf5vfyf",
"depends": ["BiocFileCache", "osfr"]
},
"OTUbase": {
"name": "OTUbase",
"version": "1.60.0",
"sha256": "1yqzkmfl71i4kk1xy5vgw8rnhjr2xh5zpdr99xirgkhz3xbay27h",
"depends": ["Biobase", "Biostrings", "IRanges", "S4Vectors", "ShortRead", "vegan"]
},
"OUTRIDER": {
"name": "OUTRIDER",
"version": "1.28.0",
"sha256": "0fgypmzap54d8bmln0y3fb9s2xyiz3v9zigfslwh7bbm8wnrqblx",
"depends": ["BBmisc", "BiocGenerics", "BiocParallel", "DESeq2", "GenomicFeatures", "GenomicRanges", "IRanges", "PRROC", "RColorBrewer", "RMTstat", "Rcpp", "RcppArmadillo", "S4Vectors", "SummarizedExperiment", "data_table", "generics", "ggplot2", "ggrepel", "heatmaply", "matrixStats", "pcaMethods", "pheatmap", "plotly", "plyr", "pracma", "reshape2", "scales", "txdbmaker"]
},
"OVESEG": {
"name": "OVESEG",
"version": "1.26.0",
"sha256": "0d9cmf9yzqyw6ksf54sv1iyzc6nzzahzr2dj9ghhc9s5hx0p2fhw",
"depends": ["BiocParallel", "Rcpp", "SummarizedExperiment", "fdrtool", "limma"]
},
"OmaDB": {
"name": "OmaDB",
"version": "2.26.0",
"sha256": "08b4w22inxykx3843a5yflq1iwr1w1ld3yd2bdnbmv23wf98khlm",
"depends": ["Biostrings", "GenomicRanges", "IRanges", "ape", "httr", "jsonlite", "plyr", "topGO"]
},
"OmicCircos": {
"name": "OmicCircos",
"version": "1.48.0",
"sha256": "0227a1zi1aqnaqz0wrvvya5py6wrcggmlj8px7bc17bimcaa95i4",
"depends": ["GenomicRanges"]
},
"Omixer": {
"name": "Omixer",
"version": "1.20.0",
"sha256": "1bxyvk26dlbdci5n0k4j3sm1gni4b9w5b5zrv47isd382j406pb2",
"depends": ["dplyr", "forcats", "ggplot2", "gridExtra", "magrittr", "readr", "stringr", "tibble", "tidyselect"]
},
"OncoScore": {
"name": "OncoScore",
"version": "1.38.0",
"sha256": "1ql4xlzj2cd4pr2j5zzb6xc1zhpp350ff79i9w74g8ir5c548m6a",
"depends": ["biomaRt"]
},
"OncoSimulR": {
"name": "OncoSimulR",
"version": "4.12.0",
"sha256": "18y9qdp3wzgc9chs89w9di4z34l2a3shzdwp8vga3mcw5h5issnr",
"depends": ["RColorBrewer", "Rcpp", "Rgraphviz", "car", "data_table", "dplyr", "ggplot2", "ggrepel", "graph", "gtools", "igraph", "smatr", "stringr"]
},
"OpenStats": {
"name": "OpenStats",
"version": "1.22.0",
"sha256": "0j9i3ija2x47gvg3r3nqshcjk1k43g032d851z6mqhg5aqv6kmbs",
"depends": ["AICcmodavg", "Hmisc", "MASS", "car", "jsonlite", "knitr", "nlme", "rlist", "summarytools"]
},
"OrderedList": {
"name": "OrderedList",
"version": "1.82.0",
"sha256": "10yb9yfpkynzhl9kw93sj3vs87ly3rjgjdzcgj4lyd2fz9n5h3xy",
"depends": ["Biobase", "twilight"]
},
"Organism_dplyr": {
"name": "Organism.dplyr",
"version": "1.37.1",
"sha256": "0n9qfwx54pniyb849cx5whnf9hbrsiqyd6xn4bqhq4sl29ly3npd",
"depends": ["AnnotationDbi", "AnnotationFilter", "BiocFileCache", "DBI", "GenomicFeatures", "GenomicRanges", "IRanges", "RSQLite", "S4Vectors", "Seqinfo", "dbplyr", "dplyr", "rlang", "tibble"]
},
"OrganismDbi": {
"name": "OrganismDbi",
"version": "1.52.0",
"sha256": "180d26ri4r9fdzx1fvggif9yy6xgi1ys8zf11llhman65wwl1w6d",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "BiocManager", "DBI", "GenomicFeatures", "GenomicRanges", "IRanges", "RBGL", "S4Vectors", "Seqinfo", "graph"]
},
"Oscope": {
"name": "Oscope",
"version": "1.40.0",
"sha256": "1z1ghy7ix9gk613ilwqrmij91qych3slyrwp68vdhclkx5bs917b",
"depends": ["BiocParallel", "EBSeq", "cluster", "testthat"]
},
"OutSplice": {
"name": "OutSplice",
"version": "1.10.0",
"sha256": "13c7ssnjkyb5fhzr2d47x7c4pqbgacs6rj8965b61jq25g2yscvi",
"depends": ["AnnotationDbi", "GenomicFeatures", "GenomicRanges", "IRanges", "S4Vectors", "TxDb_Hsapiens_UCSC_hg19_knownGene", "TxDb_Hsapiens_UCSC_hg38_knownGene", "org_Hs_eg_db"]
},
"PAA": {
"name": "PAA",
"version": "1.44.0",
"sha256": "03rbqcly1gjcflbwxfn3lw1c6rdi96201lx15hq12b88hr6hzxk3",
"depends": ["MASS", "ROCR", "Rcpp", "e1071", "gplots", "gtools", "limma", "mRMRe", "randomForest", "sva"]
},
"PADOG": {
"name": "PADOG",
"version": "1.52.0",
"sha256": "1l33q9vnmq9dlxdvx0f25zb01ynxi6pw5gwbqcl8fdz6f4b4slan",
"depends": ["AnnotationDbi", "Biobase", "GSA", "KEGGREST", "KEGGdzPathwaysGEO", "doRNG", "foreach", "hgu133a_db", "hgu133plus2_db", "limma", "nlme"]
},
"PAIRADISE": {
"name": "PAIRADISE",
"version": "1.26.0",
"sha256": "1gmm2p4zgxqmgn90q4cr1qh2wrsazs5ls4jw9w5sps48i98laggd",
"depends": ["BiocParallel", "S4Vectors", "SummarizedExperiment", "abind", "nloptr"]
},
"PANR": {
"name": "PANR",
"version": "1.56.0",
"sha256": "0w4gxxhic91zdw0gh4hzy4sbpdfqvxy8m1riga2qy1sy2zh7wgkx",
"depends": ["MASS", "RedeR", "igraph", "pvclust"]
},
"PAST": {
"name": "PAST",
"version": "1.26.0",
"sha256": "0kyh078cphc27djbk76mdgd6mz0zwnbx0rmvsp0nrm0vj8y6zflq",
"depends": ["GenomicRanges", "S4Vectors", "doParallel", "dplyr", "foreach", "ggplot2", "iterators", "qvalue", "rlang", "rtracklayer"]
},
"PCAN": {
"name": "PCAN",
"version": "1.38.0",
"sha256": "15bcrr5mij4zvj2m195i4spvz8bp4rffd9154x4zf18k7m50vrrv",
"depends": ["BiocParallel"]
},
"PDATK": {
"name": "PDATK",
"version": "1.18.0",
"sha256": "0awhbxqp8kmjak7lffkwvhqdk4bgpgs15kc2icyfzbk7hm1l8lg7",
"depends": ["BiocGenerics", "BiocParallel", "ConsensusClusterPlus", "CoreGx", "MatrixGenerics", "MultiAssayExperiment", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "caret", "clusterRepro", "data_table", "dplyr", "genefu", "ggplot2", "ggplotify", "igraph", "matrixStats", "pROC", "piano", "plyr", "reportROC", "rlang", "scales", "survcomp", "survival", "survminer", "switchBox", "verification"]
},
"PECA": {
"name": "PECA",
"version": "1.46.0",
"sha256": "03bjxl5kx42090zsnbfanqjr09rj21h6m21alys7d1qr1h2mi7p0",
"depends": ["ROTS", "affy", "aroma_affymetrix", "aroma_core", "genefilter", "limma", "preprocessCore"]
},
"PICB": {
"name": "PICB",
"version": "1.2.0",
"sha256": "1wzf3d3x7c01cbqmy42m0nkhg93ff2k5dpj3air73dpdkif0wh1n",
"depends": ["Biostrings", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "data_table", "dplyr", "openxlsx", "seqinr"]
},
"PIPETS": {
"name": "PIPETS",
"version": "1.6.0",
"sha256": "1nrfwhlzw4ygfgc6bv75xahj70q5cx314i78gapvmx6z3m63j9f1",
"depends": ["BiocGenerics", "GenomicRanges", "dplyr"]
},
"PIUMA": {
"name": "PIUMA",
"version": "1.5.0",
"sha256": "1k2gv9m1wcsc3awcbhmcmw0n8jh2grpzkagdj3gvqmvxli7ds2zi",
"depends": ["Hmisc", "SummarizedExperiment", "cluster", "dbscan", "ggplot2", "igraph", "kernlab", "patchwork", "scales", "tsne", "umap", "vegan"]
},
"PLPE": {
"name": "PLPE",
"version": "1.70.0",
"sha256": "0kyh0vpg1gmj0yriasp8algnmg0yn0ar7aqcssri3752bcv9g6fx",
"depends": ["Biobase", "LPE", "MASS"]
},
"PLSDAbatch": {
"name": "PLSDAbatch",
"version": "1.6.0",
"sha256": "0fvmpdmldd9f5kza9x5lnkrx9r445sndpdrh4xj49lflbzxlzn5s",
"depends": ["Biobase", "BiocStyle", "Rdpack", "TreeSummarizedExperiment", "ggplot2", "ggpubr", "gridExtra", "lmerTest", "mixOmics", "performance", "pheatmap", "scales", "vegan"]
},
"PMScanR": {
"name": "PMScanR",
"version": "1.0.0",
"sha256": "15qmll6nirl8whq4r1g13h7xycm5lmzq4rlqh291kw13fyy80acm",
"depends": ["BiocFileCache", "bslib", "dplyr", "ggplot2", "ggseqlogo", "magrittr", "plotly", "reshape2", "rlang", "rtracklayer", "seqinr", "shiny", "shinyFiles", "stringr"]
},
"POMA": {
"name": "POMA",
"version": "1.20.0",
"sha256": "11z36bzsch3j2b1pnifkjpyb0m1a5aq2l7k69icwj4ihbj8hv6ba",
"depends": ["ComplexHeatmap", "DESeq2", "FSA", "MASS", "RankProd", "SummarizedExperiment", "broom", "caret", "dbscan", "dplyr", "fgsea", "ggcorrplot", "ggplot2", "ggrepel", "glmnet", "impute", "janitor", "limma", "lme4", "magrittr", "mixOmics", "msigdbr", "multcomp", "purrr", "randomForest", "rlang", "sva", "tibble", "tidyr", "uwot", "vegan"]
},
"POWSC": {
"name": "POWSC",
"version": "1.18.0",
"sha256": "1sk5sk51k7cyq2yh5x4fygsgibdm2vqv8nnwfp96328x1nlf1kak",
"depends": ["Biobase", "MAST", "RColorBrewer", "SingleCellExperiment", "SummarizedExperiment", "ggplot2", "limma", "pheatmap"]
},
"PPInfer": {
"name": "PPInfer",
"version": "1.36.0",
"sha256": "02hwar7xg1l2qd035pvdzmy6hlsdqxllrps8xd7dd9bcyc3nnq4g",
"depends": ["STRINGdb", "biomaRt", "fgsea", "ggplot2", "httr", "igraph", "kernlab", "yeastExpData"]
},
"PREDA": {
"name": "PREDA",
"version": "1.56.0",
"sha256": "1yi4hs4hwp1pwf8rivjqkfcrgzixfmiqdl8raf38la683andq2m1",
"depends": ["Biobase", "annotate", "lokern", "multtest"]
},
"PROMISE": {
"name": "PROMISE",
"version": "1.62.0",
"sha256": "1daz6g1awdsb2yxfb390341yx8zl4xrilgdai6h2ci0qd4wffrz2",
"depends": ["Biobase", "GSEABase"]
},
"PRONE": {
"name": "PRONE",
"version": "1.4.0",
"sha256": "18l7f0mbs3gr1kasx81b6yayiqh06w7n1wcb4s68yw8q0cj4giv3",
"depends": ["Biobase", "ComplexHeatmap", "ComplexUpset", "DEqMS", "MASS", "MSnbase", "NormalyzerDE", "POMA", "RColorBrewer", "ROTS", "S4Vectors", "SummarizedExperiment", "UpSetR", "circlize", "data_table", "dendsort", "dplyr", "edgeR", "ggplot2", "ggtext", "gprofiler2", "gtools", "limma", "magrittr", "matrixStats", "plotROC", "preprocessCore", "purrr", "reshape2", "scales", "stringr", "tibble", "tidyr", "vegan", "vsn"]
},
"PROPER": {
"name": "PROPER",
"version": "1.42.0",
"sha256": "1a93nn3p9s09ncaddif07nwq9xwmfx85c11chap1yb398f19czj5",
"depends": ["edgeR"]
},
"PROPS": {
"name": "PROPS",
"version": "1.32.0",
"sha256": "0wlsavvln63sljmyf220xvs7rndqqylmnlrpwqpzffb3jw7djqjs",
"depends": ["Biobase", "bnlearn", "reshape2", "sva"]
},
"PROcess": {
"name": "PROcess",
"version": "1.86.0",
"sha256": "0hjcpmx0kx64fy1hlji0dbqr4d8r65v17z8a1lwh83ggn83mwz6a",
"depends": ["Icens"]
},
"PSMatch": {
"name": "PSMatch",
"version": "1.14.0",
"sha256": "021axxxc4590m350mcs14glyygzsy4m7x6zg3isfxn1rhsva351r",
"depends": ["BiocGenerics", "BiocParallel", "IRanges", "Matrix", "MsCoreUtils", "ProtGenerics", "QFeatures", "S4Vectors", "Spectra", "igraph"]
},
"PWMEnrich": {
"name": "PWMEnrich",
"version": "4.46.0",
"sha256": "07kcd91ziq0bf76q3437vr4rpvllx5f8bm6mbqndgbxffz4ar9q5",
"depends": ["BiocGenerics", "Biostrings", "S4Vectors", "evd", "gdata", "seqLogo"]
},
"PanomiR": {
"name": "PanomiR",
"version": "1.14.0",
"sha256": "0w9jm6xfrp42rwblq9b1xc17bqybv8m9b4sc44bbir5jb3x3cffi",
"depends": ["GSEABase", "RColorBrewer", "clusterProfiler", "dplyr", "forcats", "igraph", "limma", "metap", "org_Hs_eg_db", "preprocessCore", "rlang", "tibble", "withr"]
},
"Path2PPI": {
"name": "Path2PPI",
"version": "1.40.0",
"sha256": "10ziydlb83piccczmygq2s8vlrnbi7kksz8f5zc46myg8cz0lpdc",
"depends": ["igraph"]
},
"PathNet": {
"name": "PathNet",
"version": "1.50.0",
"sha256": "0jbvw17acxmv3hcfjzkhgfdc24qvfm5w8a5pda8gqyahjm2vnhvq",
"depends": []
},
"PathoStat": {
"name": "PathoStat",
"version": "1.36.0",
"sha256": "12l79rj60iibn9vgvsjwnsnsprba6i507q3852gdagamvfziar57",
"depends": ["BiocStyle", "ComplexHeatmap", "DESeq2", "DT", "RColorBrewer", "ROCR", "XML", "ape", "corpcor", "devtools", "dplyr", "edgeR", "ggplot2", "glmnet", "gmodels", "knitr", "limma", "matrixStats", "phyloseq", "plotly", "plyr", "rentrez", "reshape2", "scales", "shiny", "shinyjs", "tidyr", "vegan", "webshot"]
},
"PeacoQC": {
"name": "PeacoQC",
"version": "1.20.0",
"sha256": "05pv91clpdb6mq1ki8zp67rd7l414g7nacxcgqpxvdxwf35byibg",
"depends": ["ComplexHeatmap", "circlize", "flowCore", "flowWorkspace", "ggplot2", "gridExtra", "plyr"]
},
"Pedixplorer": {
"name": "Pedixplorer",
"version": "1.6.0",
"sha256": "0yih17g5950ykrflyhlgwdhjlb23wcm5xsf3901za5dm1nxak0ag",
"depends": ["DT", "Matrix", "S4Vectors", "colourpicker", "dplyr", "ggplot2", "htmlwidgets", "igraph", "plotly", "plyr", "quadprog", "readxl", "shiny", "shinyWidgets", "shinycssloaders", "shinyhelper", "shinyjqui", "shinyjs", "shinytoastr", "stringr", "tidyr"]
},
"PepSetTest": {
"name": "PepSetTest",
"version": "1.4.0",
"sha256": "0f60csg07bbsf5jjpzrxr8sdrr35q889990iaxbp7l9g0im0aygg",
"depends": ["MASS", "SummarizedExperiment", "dplyr", "limma", "lme4", "matrixStats", "reshape2", "tibble"]
},
"PepsNMR": {
"name": "PepsNMR",
"version": "1.28.0",
"sha256": "16fmlwhwgyw703n6m7f5r3y2kh3ix7qzblzcw1ckaxc0sak3p8fg",
"depends": ["Matrix", "ggplot2", "gridExtra", "matrixStats", "ptw", "reshape2"]
},
"PhIPData": {
"name": "PhIPData",
"version": "1.18.0",
"sha256": "0lj06ym0414hqxi1i6k7xbjrh7clhmw30gam39f34kf28iw8cc52",
"depends": ["BiocFileCache", "BiocGenerics", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment", "cli", "edgeR"]
},
"PharmacoGx": {
"name": "PharmacoGx",
"version": "3.14.0",
"sha256": "1hz9cqhxsi13icw6my1yamx97nqcj684jgjxpfrh88qlq0diq04h",
"depends": ["Biobase", "BiocGenerics", "BiocParallel", "CoreGx", "MultiAssayExperiment", "RColorBrewer", "Rcpp", "S4Vectors", "SummarizedExperiment", "boot", "caTools", "checkmate", "coop", "data_table", "downloader", "ggplot2", "jsonlite", "magicaxis", "reshape2"]
},
"PhenoGeneRanker": {
"name": "PhenoGeneRanker",
"version": "1.18.0",
"sha256": "1c9bjzn6f3j3bl1z4wfcyx21pwh2hrqpj3ack4b4h5hbmr0r8ilr",
"depends": ["Matrix", "doParallel", "dplyr", "foreach", "igraph"]
},
"PhosR": {
"name": "PhosR",
"version": "1.20.0",
"sha256": "0m7nxwnsanwwxd6yhc07hw96qm8p7bkyafn41p66g5zkaq2xrfwz",
"depends": ["BiocGenerics", "GGally", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "circlize", "dendextend", "dplyr", "e1071", "ggdendro", "ggplot2", "ggpubr", "ggtext", "igraph", "limma", "network", "pcaMethods", "pheatmap", "preprocessCore", "reshape2", "rlang", "ruv", "stringi", "tidyr"]
},
"PhyloProfile": {
"name": "PhyloProfile",
"version": "2.2.0",
"sha256": "1rmq0x7gc0l6h585qywlf6gsk3l72p7qqzlg0dmwwv7v9h5mdmv8",
"depends": ["BiocStyle", "Biostrings", "DT", "RColorBrewer", "RCurl", "Rfast", "ape", "bioDist", "bsplus", "colourpicker", "data_table", "dplyr", "energy", "fastcluster", "ggplot2", "gridExtra", "htmlwidgets", "pbapply", "plotly", "scattermore", "shiny", "shinyFiles", "shinycssloaders", "shinyjs", "stringr", "svglite", "tsne", "umap", "xml2", "yaml", "zoo"]
},
"PoDCall": {
"name": "PoDCall",
"version": "1.18.0",
"sha256": "07aa8d1zxgm4nqs86maj6h2xmfyg6bicwyflab8fr2glq89ssjap",
"depends": ["DT", "LaplacesDemon", "diptest", "ggplot2", "gridExtra", "mclust", "purrr", "readr", "rlist", "shiny", "shinyjs"]
},
"PolySTest": {
"name": "PolySTest",
"version": "1.4.0",
"sha256": "00zq59qj0hv956sfh93vwbdqiv77909b7zl114kjm2gvgrcpwfqm",
"depends": ["S4Vectors", "SummarizedExperiment", "UpSetR", "circlize", "fdrtool", "gplots", "heatmaply", "knitr", "limma", "matrixStats", "plotly", "qvalue", "shiny"]
},
"Polytect": {
"name": "Polytect",
"version": "1.2.0",
"sha256": "0a3myqbiqqnd669azx3qk9szc37436kffkd7gvy4kr3q8qaz4v4n",
"depends": ["BiocManager", "DiceKriging", "ParamHelpers", "cowplot", "dplyr", "flowPeaks", "ggplot2", "lhs", "mlrMBO", "mvtnorm", "rgenoud", "smoof", "sn", "tidyverse"]
},
"PrInCE": {
"name": "PrInCE",
"version": "1.26.0",
"sha256": "0c0jvjjc8syf2g6rj58475nxfa3h1qrc45iv36qzs1mwpdx5j5rw",
"depends": ["Biobase", "Hmisc", "LiblineaR", "MSnbase", "Rdpack", "dplyr", "forecast", "magrittr", "naivebayes", "progress", "purrr", "ranger", "robustbase", "speedglm", "tester", "tidyr"]
},
"Prostar": {
"name": "Prostar",
"version": "1.42.0",
"sha256": "1dg838si4bcs5i29q7yhsj5g2cdvddnqc19zqmf5gxpvj84l7r9l",
"depends": ["Biobase", "DAPAR", "DAPARdata", "DT", "RColorBrewer", "R_utils", "XML", "colourpicker", "data_table", "future", "ggplot2", "gplots", "gtools", "highcharter", "htmlwidgets", "later", "markdown", "promises", "rclipboard", "rhandsontable", "sass", "shiny", "shinyAce", "shinyBS", "shinyTree", "shinyWidgets", "shinycssloaders", "shinyjqui", "shinyjs", "shinythemes", "tibble", "vioplot", "webshot"]
},
"ProtGenerics": {
"name": "ProtGenerics",
"version": "1.42.0",
"sha256": "0g9d54az95qvqqnsbqjr4001jzfpwzs4apfjywxaha4k8cavb69f",
"depends": []
},
"ProteoDisco": {
"name": "ProteoDisco",
"version": "1.16.0",
"sha256": "13d46s2vzpkxq423cwhd26zhgxib28jh7dcmkm2pz704qgd988s8",
"depends": ["BiocGenerics", "BiocParallel", "Biostrings", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "ParallelLogger", "S4Vectors", "Seqinfo", "VariantAnnotation", "XVector", "checkmate", "cleaver", "dplyr", "plyr", "rlang", "tibble", "tidyr"]
},
"ProteoMM": {
"name": "ProteoMM",
"version": "1.28.0",
"sha256": "1swqzig7dlkqq4kr8pbhfh3q2lk4c5cbm3knx14y86xpx9xsgqik",
"depends": ["biomaRt", "gdata", "ggplot2", "ggrepel", "gtools", "matrixStats"]
},
"PureCN": {
"name": "PureCN",
"version": "2.16.0",
"sha256": "1kzp4avvnzih12m7c46n440msrrb97ibsjzwf6ay1l7n8qrjmqqi",
"depends": ["Biobase", "BiocGenerics", "Biostrings", "DNAcopy", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "Matrix", "RColorBrewer", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "VGAM", "VariantAnnotation", "data_table", "futile_logger", "ggplot2", "gridExtra", "mclust", "rhdf5", "rtracklayer"]
},
"Pviz": {
"name": "Pviz",
"version": "1.44.0",
"sha256": "196x9n0rs1cs9c2j11fg8a2w09rpbmzgm6pwmamc8mqir91yajzk",
"depends": ["Biostrings", "GenomicRanges", "Gviz", "IRanges", "biovizBase", "data_table"]
},
"QDNAseq": {
"name": "QDNAseq",
"version": "1.46.0",
"sha256": "12bf7x4c2vhq28vbzj322yp2gyvwcakpw13x6bsi3r87vg8rfdlr",
"depends": ["Biobase", "BiocGenerics", "CGHbase", "CGHcall", "DNAcopy", "GenomicRanges", "IRanges", "R_utils", "Rsamtools", "Seqinfo", "future_apply", "matrixStats"]
},
"QFeatures": {
"name": "QFeatures",
"version": "1.20.0",
"sha256": "0q14b2ppvdd9gb89xp86gdn45krzv5sz1n3f6ip6qxi8nn293lzy",
"depends": ["AnnotationFilter", "Biobase", "BiocGenerics", "IRanges", "MsCoreUtils", "MultiAssayExperiment", "ProtGenerics", "S4Vectors", "SummarizedExperiment", "igraph", "lazyeval", "plotly", "reshape2", "tidyr", "tidyselect"]
},
"QRscore": {
"name": "QRscore",
"version": "1.2.0",
"sha256": "1wh503rrfghah7xk3dj7rxxajg8s0xfyj6xczz4a007bc93hv976",
"depends": ["BiocParallel", "MASS", "arrangements", "assertthat", "dplyr", "hitandrun", "pscl"]
},
"QSutils": {
"name": "QSutils",
"version": "1.28.0",
"sha256": "04f0jslf8cg93yz14nhf9rqpnaslbyg6vnlspjs2rf6lpdjqjx34",
"depends": ["BiocGenerics", "Biostrings", "ape", "psych", "pwalign"]
},
"QTLExperiment": {
"name": "QTLExperiment",
"version": "2.2.0",
"sha256": "1dx94w8kjdn2vs8kyvdwik7hjgi5rv2ixmgjjck9ri5lh7488nhi",
"depends": ["BiocGenerics", "S4Vectors", "SummarizedExperiment", "ashr", "checkmate", "collapse", "dplyr", "rlang", "tibble", "tidyr", "vroom"]
},
"QUBIC": {
"name": "QUBIC",
"version": "1.38.0",
"sha256": "1x3kps3n6qqkdm5q3c0mhy10d2f9a059afqc84n6vqcdvh9zbhsj",
"depends": ["Matrix", "Rcpp", "RcppArmadillo", "biclust"]
},
"Qtlizer": {
"name": "Qtlizer",
"version": "1.24.0",
"sha256": "1fj2lbzn7myxa287b014jyjjfh47qa9x22bqrxvipg1q36kg6xf2",
"depends": ["GenomicRanges", "curl", "httr", "stringi"]
},
"QuasR": {
"name": "QuasR",
"version": "1.50.0",
"sha256": "145wzdnhjhi0ys8nlsasjqw57f693yf2iichd9045s52x5zjny4h",
"depends": ["AnnotationDbi", "BSgenome", "Biobase", "BiocGenerics", "BiocParallel", "Biostrings", "GenomicFeatures", "GenomicFiles", "GenomicRanges", "IRanges", "Rbowtie", "Rhtslib", "Rsamtools", "S4Vectors", "Seqinfo", "ShortRead", "rtracklayer", "txdbmaker"]
},
"QuaternaryProd": {
"name": "QuaternaryProd",
"version": "1.44.0",
"sha256": "1qsjs49byidzd67izzcakf4dvxzgsw7i79ly237ppr8h75nbzc6w",
"depends": ["Rcpp", "dplyr", "yaml"]
},
"R3CPET": {
"name": "R3CPET",
"version": "1.42.0",
"sha256": "1lj391k0sx58n2rjniixr3l0hkdw2y1hsf492fhj7cnhzph6bdj9",
"depends": ["BiocGenerics", "GenomeInfoDb", "GenomicRanges", "Hmisc", "IRanges", "RCurl", "Rcpp", "S4Vectors", "clValid", "data_table", "ggbio", "ggplot2", "igraph", "pheatmap", "reshape2"]
},
"R4RNA": {
"name": "R4RNA",
"version": "1.38.0",
"sha256": "1hgyqqw7abkkx525j0i9qhrs0bir29xsxbzg0lg93swfsf4jwily",
"depends": ["Biostrings"]
},
"RAIDS": {
"name": "RAIDS",
"version": "1.8.0",
"sha256": "150fiaw8nl8b3687aay30n2d36z9310wjhfikglc0l90k4y1a0i8",
"depends": ["AnnotationDbi", "AnnotationFilter", "BSgenome", "GENESIS", "GenomicRanges", "IRanges", "MatrixGenerics", "Rsamtools", "S4Vectors", "SNPRelate", "VariantAnnotation", "class", "dplyr", "ensembldb", "gdsfmt", "ggplot2", "pROC", "rlang", "stringr"]
},
"RAREsim": {
"name": "RAREsim",
"version": "1.14.0",
"sha256": "0acrjn0zrvi1an8jpjhmlgg6ndnxyd427xvqynq5y4rrl49kh80f",
"depends": ["nloptr"]
},
"RBGL": {
"name": "RBGL",
"version": "1.86.0",
"sha256": "083gm7biwq5z0jibr3wbdkjs50kqphwjkh571awk8rhlniqwpi1f",
"depends": ["BH", "graph"]
},
"RBM": {
"name": "RBM",
"version": "1.42.0",
"sha256": "1yqq95503l1jhlppqgirgrrzskhw0h2zap5vrym7ba9x7f42pdcy",
"depends": ["limma", "marray"]
},
"RBioFormats": {
"name": "RBioFormats",
"version": "1.10.0",
"sha256": "0k1cmh3qdiw2kyidzgn2vbsmnp6ag1nw9v9cr58m5j4hlx5zj2n1",
"depends": ["EBImage", "S4Vectors", "rJava"]
},
"RCAS": {
"name": "RCAS",
"version": "1.36.0",
"sha256": "1jrwmggylbgq9k7y9b8l176pk5b2r2ggcs2psf2bl2p96wczj4jb",
"depends": ["BSgenome", "BSgenome_Hsapiens_UCSC_hg19", "BiocGenerics", "Biostrings", "DT", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "RSQLite", "S4Vectors", "cowplot", "data_table", "genomation", "ggplot2", "gprofiler2", "knitr", "pbapply", "pheatmap", "plotly", "plotrix", "proxy", "ranger", "rmarkdown", "rtracklayer", "seqLogo", "txdbmaker"]
},
"RCASPAR": {
"name": "RCASPAR",
"version": "1.56.0",
"sha256": "0076zajkxmmqgwpkw0spfyqx5r5y0nqpqr6jh2yma24wxprhx228",
"depends": []
},
"RCM": {
"name": "RCM",
"version": "1.26.0",
"sha256": "1r26gqkzqxv6a8q3a7rdisggznx51v1hn6wq35300wxixzh6nz36",
"depends": ["MASS", "RColorBrewer", "VGAM", "alabama", "edgeR", "ggplot2", "nleqslv", "phyloseq", "reshape2", "tensor", "tseries"]
},
"RCSL": {
"name": "RCSL",
"version": "1.18.0",
"sha256": "1cq8xzn109knhgzvzvdq8pz677jq5k7zmzn009h1nm9g8vn9fsq6",
"depends": ["MatrixGenerics", "NbClust", "Rcpp", "RcppAnnoy", "Rtsne", "SingleCellExperiment", "ggplot2", "igraph", "pracma", "umap"]
},
"RCX": {
"name": "RCX",
"version": "1.14.0",
"sha256": "0h7blsgi60na56xgy2m47irqd9ql6dfmifrk1kcgnydcz5wjzr3g",
"depends": ["igraph", "jsonlite", "plyr"]
},
"RCy3": {
"name": "RCy3",
"version": "2.30.0",
"sha256": "1xc19lvdz6yyg2844j83idv64adfrw1bkpiazd4w39xa46l46lck",
"depends": ["BiocGenerics", "IRdisplay", "IRkernel", "RColorBrewer", "RCurl", "RJSONIO", "XML", "base64enc", "base64url", "fs", "glue", "gplots", "graph", "httr", "stringi", "uuid"]
},
"RCyjs": {
"name": "RCyjs",
"version": "2.32.0",
"sha256": "0xdflz3m2nrw6w05mmsqpdk5jhzikkfn9wq5fwclhgmr8jr687fm",
"depends": ["BiocGenerics", "BrowserViz", "base64enc", "graph", "httpuv"]
},
"RDRToolbox": {
"name": "RDRToolbox",
"version": "1.60.0",
"sha256": "1vwbwli7ypchkjr6m5siv9zvy18689fvsnh99w6h9rlisbrhlw7c",
"depends": ["MASS", "rgl"]
},
"REBET": {
"name": "REBET",
"version": "1.28.0",
"sha256": "17s6rhqvvngx5k39kjw5p1j9wzv8ycak0qlhgqqjchhx2sdk2xrz",
"depends": ["ASSET"]
},
"REDseq": {
"name": "REDseq",
"version": "1.56.0",
"sha256": "0p0gwhq95s32d7nps5sg7zx0xi7ndg26bzb6yaxx3ymc8qsnpwvv",
"depends": ["AnnotationDbi", "BSgenome", "BSgenome_Celegans_UCSC_ce2", "BiocGenerics", "Biostrings", "ChIPpeakAnno", "IRanges", "multtest"]
},
"REMP": {
"name": "REMP",
"version": "1.34.0",
"sha256": "1xvzxgcjy1va1spd0g0zfnaa7n2fk0ji3lxki8n7s2qs2r7qpjc5",
"depends": ["AnnotationHub", "BSgenome", "BiocGenerics", "BiocParallel", "Biostrings", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "SummarizedExperiment", "caret", "doParallel", "foreach", "impute", "iterators", "kernlab", "minfi", "org_Hs_eg_db", "ranger", "readr", "rtracklayer", "settings"]
},
"RESOLVE": {
"name": "RESOLVE",
"version": "1.12.0",
"sha256": "1r34ahcnbnxaz54zzyl8v3mawl5pbzrn7r43qj9nma1vxklf1yxk",
"depends": ["BSgenome", "BSgenome_Hsapiens_1000genomes_hs37d5", "Biostrings", "GenomeInfoDb", "GenomicRanges", "IRanges", "MutationalPatterns", "RhpcBLASctl", "S4Vectors", "cluster", "data_table", "ggplot2", "glmnet", "gridExtra", "lsa", "nnls", "reshape2", "survival"]
},
"RFLOMICS": {
"name": "RFLOMICS",
"version": "1.2.0",
"sha256": "17vjzydinij9sqj2ng6s2hjhb2652rsnzppalfrydf61kdjrk99g",
"depends": ["AnnotationDbi", "ComplexHeatmap", "DT", "FactoMineR", "MOFA2", "MultiAssayExperiment", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "UpSetR", "clusterProfiler", "coseq", "data_table", "dplyr", "edgeR", "enrichplot", "ggplot2", "ggpubr", "ggrepel", "htmltools", "httr", "knitr", "limma", "magrittr", "mixOmics", "org_At_tair_db", "plotly", "purrr", "reshape2", "reticulate", "rmarkdown", "shiny", "shinyBS", "shinyWidgets", "shinydashboard", "stringr", "tibble", "tidyr", "tidyselect", "vroom"]
},
"RGSEA": {
"name": "RGSEA",
"version": "1.44.0",
"sha256": "1rlx525m2p82fsy4crwsiph6wds8aaqs1nmiyq8r47j0qzkxcblg",
"depends": ["BiocGenerics"]
},
"RGraph2js": {
"name": "RGraph2js",
"version": "1.38.0",
"sha256": "14j90xk3h20wsrpxq0wacrbnl8vwr6r80fdq415rpaahzg3simhy",
"depends": ["digest", "graph", "rjson", "whisker"]
},
"RITAN": {
"name": "RITAN",
"version": "1.34.0",
"sha256": "0mj8dvqwvjgyj8igwmyr70rs8244id81q7r7h75ncky8kq74q6kp",
"depends": ["AnnotationFilter", "BgeeDB", "EnsDb_Hsapiens_v86", "GenomicFeatures", "MCL", "RColorBrewer", "RITANdata", "STRINGdb", "dynamicTreeCut", "ensembldb", "ggplot2", "gplots", "gridExtra", "gsubfn", "hash", "igraph", "knitr", "plotrix", "png", "reshape2", "sqldf"]
},
"RIVER": {
"name": "RIVER",
"version": "1.34.0",
"sha256": "1nf56wlh5v678w6bjgyqkalk7vhimyl6830v64iwfm5mxqj18726",
"depends": ["Biobase", "ggplot2", "glmnet", "pROC"]
},
"RImmPort": {
"name": "RImmPort",
"version": "1.38.0",
"sha256": "0wljrymp15b7lav18cwfhzfx9m18sk80jaqb0ng53dajz5pvhpyj",
"depends": ["DBI", "RSQLite", "data_table", "dplyr", "plyr", "reshape2", "sqldf"]
},
"RJMCMCNucleosomes": {
"name": "RJMCMCNucleosomes",
"version": "1.34.0",
"sha256": "17jykk7mffdw5w2rn2bghkmx9yk8vj90vs31xyjhvpfj67n8d1cr",
"depends": ["BiocGenerics", "BiocParallel", "GenomicRanges", "IRanges", "Rcpp", "S4Vectors", "Seqinfo", "consensusSeekeR"]
},
"RLMM": {
"name": "RLMM",
"version": "1.72.0",
"sha256": "07a4nhwrk697h4k0asb6k53wykhqzgpr07nhzkg4ipy5jcr4yj69",
"depends": ["MASS"]
},
"RLassoCox": {
"name": "RLassoCox",
"version": "1.18.0",
"sha256": "1393fi1brfnbd1ygqw3ypfrfsv6nspz4fclvqr82pyvlj7wbrlfz",
"depends": ["Matrix", "glmnet", "igraph", "survival"]
},
"RMassBank": {
"name": "RMassBank",
"version": "3.20.0",
"sha256": "040fzq6gia3922lxgc8w7bnszyyr1yavpca1bzz7jq6rsi2rf2x6",
"depends": ["Biobase", "ChemmineR", "MSnbase", "R_utils", "Rcpp", "S4Vectors", "XML", "assertthat", "data_table", "digest", "dplyr", "enviPat", "glue", "httr", "httr2", "logger", "mzR", "purrr", "rcdk", "readJDX", "readr", "rjson", "tibble", "tidyselect", "webchem", "yaml"]
},
"RNAAgeCalc": {
"name": "RNAAgeCalc",
"version": "1.22.0",
"sha256": "0fqyiqpwn89ci15q3drvhfgwciiqmc1x82byrjvvjks9h1vmpsb2",
"depends": ["AnnotationDbi", "SummarizedExperiment", "ggplot2", "impute", "org_Hs_eg_db", "recount"]
},
"RNASeqPower": {
"name": "RNASeqPower",
"version": "1.50.0",
"sha256": "1gv85ngbfmkb0xpx0h27yn6lybxynp3gd3nl18qdjcf4bzs4kx9h",
"depends": []
},
"RNAmodR": {
"name": "RNAmodR",
"version": "1.24.0",
"sha256": "0jlvsyyb3pasq72va9imgmsmgwlvngv9d79890gx40rwm8n853cv",
"depends": ["BSgenome", "BiocGenerics", "BiocParallel", "Biostrings", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "Gviz", "IRanges", "Modstrings", "RColorBrewer", "ROCR", "Rsamtools", "S4Vectors", "Seqinfo", "colorRamps", "ggplot2", "matrixStats", "reshape2", "rtracklayer", "txdbmaker"]
},
"RNAmodR_AlkAnilineSeq": {
"name": "RNAmodR.AlkAnilineSeq",
"version": "1.24.0",
"sha256": "1m5nzviikbi6jx6pjzfpg48qxpy4synn22kipyfbxi23cnh6f2zw",
"depends": ["BiocGenerics", "GenomicRanges", "Gviz", "IRanges", "RNAmodR", "S4Vectors"]
},
"RNAmodR_ML": {
"name": "RNAmodR.ML",
"version": "1.24.0",
"sha256": "04xndcmilalhk27c41a0h7s8whn2v48x7968w6mw8g1g5d3v87jj",
"depends": ["BiocGenerics", "GenomicRanges", "IRanges", "RNAmodR", "S4Vectors", "ranger"]
},
"RNAmodR_RiboMethSeq": {
"name": "RNAmodR.RiboMethSeq",
"version": "1.24.0",
"sha256": "0wnayl13fpiy94zn6mn6k2rj9fc1v8iayb2hcarq1zqb06q0jgbp",
"depends": ["BiocGenerics", "GenomicRanges", "Gviz", "IRanges", "RNAmodR", "S4Vectors"]
},
"RNAsense": {
"name": "RNAsense",
"version": "1.24.0",
"sha256": "0c3d5694pvwvnandwqy8ikk7477w3myrc4nr13l66m6k6xppfc86",
"depends": ["NBPSeq", "SummarizedExperiment", "ggplot2", "qvalue"]
},
"RNAseqCovarImpute": {
"name": "RNAseqCovarImpute",
"version": "1.8.0",
"sha256": "0nw3aqjm1yp6vrbx09mmi5wg94wiaha753lp4rkkgifpyzcknd1a",
"depends": ["Biobase", "BiocGenerics", "BiocParallel", "dplyr", "edgeR", "foreach", "limma", "magrittr", "mice", "rlang"]
},
"ROC": {
"name": "ROC",
"version": "1.86.0",
"sha256": "1n3h77zh7k9mk99g76lb85j5zrk8b0zf8cwgag5xira0d3kggdwm",
"depends": ["knitr"]
},
"ROCpAI": {
"name": "ROCpAI",
"version": "1.22.0",
"sha256": "0zx18q157xrham37ippaihvzz8ajdcidwrs5pimwy7ds4grz3jcp",
"depends": ["SummarizedExperiment", "boot", "fission", "knitr"]
},
"ROSeq": {
"name": "ROSeq",
"version": "1.22.0",
"sha256": "01a7wc16j41gl781yan0nqxvrnr9xiqhlbpj5qnp50bhbw0nqxan",
"depends": ["edgeR", "limma", "pbmcapply"]
},
"ROTS": {
"name": "ROTS",
"version": "2.2.0",
"sha256": "0nw0g72hl519k6d7zwxrpzwbw792w6m0wva0c2cnmk7wz3f4sss9",
"depends": ["Biobase", "BiocParallel", "Rcpp", "lme4"]
},
"ROntoTools": {
"name": "ROntoTools",
"version": "2.38.0",
"sha256": "02j46cwd3cg7dqgxv93bxh1mqd92sb63vhh8rlwjs46jv1a03ps7",
"depends": ["KEGGREST", "KEGGgraph", "Rgraphviz", "boot", "graph"]
},
"RPA": {
"name": "RPA",
"version": "1.66.0",
"sha256": "0wmyircvklh9a055aqj4wav1bjzg2r5c7k0kj4smhjln3nl42rd2",
"depends": ["BiocGenerics", "BiocStyle", "affy", "phyloseq", "rmarkdown"]
},
"RProtoBufLib": {
"name": "RProtoBufLib",
"version": "2.22.0",
"sha256": "096mh27jbmbarjprm82dyxr9x32qsd4vsb3f5x7m06f6g6a6l5kc",
"depends": []
},
"RRHO": {
"name": "RRHO",
"version": "1.50.0",
"sha256": "1pdya9fk9c9w8qmq7gj7cbx8a32bm4r1r5i65fp6s3hwpk9k9zca",
"depends": ["VennDiagram"]
},
"RSVSim": {
"name": "RSVSim",
"version": "1.50.0",
"sha256": "1kcykpbpviiwnin4iap512v1qzlxfx2isxwz1nxjcc8sx75q47ha",
"depends": ["Biostrings", "GenomicRanges", "IRanges", "ShortRead"]
},
"RSeqAn": {
"name": "RSeqAn",
"version": "1.30.0",
"sha256": "0izhszw6vvhi8g3izcs7868r4ikmw11i5zphqp0prnshdv9scc73",
"depends": ["Rcpp"]
},
"RTCA": {
"name": "RTCA",
"version": "1.62.0",
"sha256": "0k0sv047laxvmcqh3fd9qhawy8nvl69s0qljs5zfv4zwzz7ksf17",
"depends": ["Biobase", "RColorBrewer", "gtools"]
},
"RTCGA": {
"name": "RTCGA",
"version": "1.40.0",
"sha256": "18j0kqa1wavhsn6wxx622s021af87kwfnh0yry75b8632fjym8vn",
"depends": ["RCurl", "XML", "assertthat", "data_table", "dplyr", "ggplot2", "ggthemes", "htmltools", "knitr", "purrr", "rmarkdown", "rvest", "scales", "stringi", "survival", "survminer", "viridis", "xml2"]
},
"RTCGAToolbox": {
"name": "RTCGAToolbox",
"version": "2.40.0",
"sha256": "15h7xahsmpmznnh9n466pbkp094kxaw8x144q4mmy5bx5s7ng6nk",
"depends": ["BiocGenerics", "DelayedArray", "GenomicRanges", "RCurl", "RJSONIO", "RaggedExperiment", "S4Vectors", "Seqinfo", "SummarizedExperiment", "TCGAutils", "data_table", "httr", "rvest", "stringr"]
},
"RTN": {
"name": "RTN",
"version": "2.34.0",
"sha256": "0pqax97c4v2zbs02m8zpikqgdpjxc44vfhangb9ncvnbpfrpd6vy",
"depends": ["IRanges", "RedeR", "S4Vectors", "SummarizedExperiment", "car", "data_table", "igraph", "limma", "minet", "mixtools", "pheatmap", "pwr", "snow", "viper"]
},
"RTNduals": {
"name": "RTNduals",
"version": "1.34.0",
"sha256": "04q5gbd2fg6zdkbymqnsb6gapq5b42p3rc4hjrc8xjypflwdgm78",
"depends": ["RTN"]
},
"RTNsurvival": {
"name": "RTNsurvival",
"version": "1.34.0",
"sha256": "0rh2x9hx9lzqkisxxvqhlk6vk5bni86d3fw1mjv0fsjkdsziky8l",
"depends": ["RColorBrewer", "RTN", "RTNduals", "data_table", "dunn_test", "egg", "ggplot2", "pheatmap", "scales", "survival"]
},
"RTopper": {
"name": "RTopper",
"version": "1.56.0",
"sha256": "0jl0xp3c60pl5lvn11fscazm7pns2gayix7pf69b29a4n59kxswv",
"depends": ["Biobase", "limma", "multtest"]
},
"RUCova": {
"name": "RUCova",
"version": "1.2.0",
"sha256": "0nx26i14041gqacx91agrml25vr3phacvzvd0diqyrl39idysqm5",
"depends": ["ComplexHeatmap", "Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "circlize", "dplyr", "fastDummies", "ggplot2", "magrittr", "stringr", "tibble", "tidyr", "tidyverse"]
},
"RUVSeq": {
"name": "RUVSeq",
"version": "1.44.0",
"sha256": "19g3n211dsc019ahpfpwkk4i8clf8jb4fp6wgf7ja3y1xaqmmd5m",
"depends": ["Biobase", "EDASeq", "MASS", "edgeR"]
},
"RUVcorr": {
"name": "RUVcorr",
"version": "1.42.0",
"sha256": "1wkbpdh8lhkyrxjk9afdyy4l6r393pi7fvaww9zh9mlk78hsr8vx",
"depends": ["BiocParallel", "MASS", "bladderbatch", "corrplot", "gridExtra", "lattice", "psych", "reshape2", "snowfall"]
},
"RUVnormalize": {
"name": "RUVnormalize",
"version": "1.44.0",
"sha256": "1wa8j3qmc9hz2yrm3gh7qjlfayizc7sw5ay98nincwz96ayiqsdi",
"depends": ["Biobase", "RUVnormalizeData"]
},
"RVS": {
"name": "RVS",
"version": "1.32.0",
"sha256": "129wq03zy5vcdiv7990i2hvh4pl0mk9zjq7gbay5k5ciynks7jy7",
"depends": ["GENLIB", "R_utils", "gRain", "kinship2", "snpStats"]
},
"RadioGx": {
"name": "RadioGx",
"version": "2.14.0",
"sha256": "1q76k68zry1cap7is6sxhazrxsv5d49mr863mrzhvnwiz03yzyab",
"depends": ["Biobase", "BiocGenerics", "BiocParallel", "CoreGx", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "assertthat", "caTools", "data_table", "downloader", "magicaxis", "matrixStats", "reshape2", "scales"]
},
"RaggedExperiment": {
"name": "RaggedExperiment",
"version": "1.34.0",
"sha256": "18mbdd0cd975q2540cdnrfdirc8khg4mqbi8z4zkabal83gzqs2s",
"depends": ["BiocBaseUtils", "BiocGenerics", "GenomicRanges", "IRanges", "Matrix", "MatrixGenerics", "S4Vectors", "Seqinfo", "SummarizedExperiment"]
},
"RankProd": {
"name": "RankProd",
"version": "3.36.0",
"sha256": "0pvmairya5abkcspwmdh9x0xd46q7sl8pcgzwcqh6gllf6halqqv",
"depends": ["Rmpfr", "gmp"]
},
"RareVariantVis": {
"name": "RareVariantVis",
"version": "2.38.0",
"sha256": "07afvjijbjfqvbzmg78fpp7ingwvvx9h203c6bczbnvi4n96y1p6",
"depends": ["BSgenome", "BSgenome_Hsapiens_UCSC_hg19", "BiocGenerics", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "GenomicScores", "IRanges", "S4Vectors", "SummarizedExperiment", "TxDb_Hsapiens_UCSC_hg19_knownGene", "VariantAnnotation", "googleVis", "gtools", "phastCons100way_UCSC_hg19"]
},
"Rarr": {
"name": "Rarr",
"version": "1.10.0",
"sha256": "048yv469xrmklmjpz4illrafaf6l56p68jkhsvcjzsx3368bw0w2",
"depends": ["BiocGenerics", "DelayedArray", "R_utils", "curl", "jsonlite", "paws_storage"]
},
"RbcBook1": {
"name": "RbcBook1",
"version": "1.78.0",
"sha256": "1i39kvws4dr9qryzqf9rl463bpjwvpszk8x6qvi7cpgmrd9zb8pn",
"depends": ["Biobase", "graph", "rpart"]
},
"Rbec": {
"name": "Rbec",
"version": "1.18.0",
"sha256": "1wgc70g5lkjfx70g9jv1mnxkkm70an8y2zkv3cgn4i1iwmipcvii",
"depends": ["Rcpp", "dada2", "doParallel", "foreach", "ggplot2", "readr"]
},
"Rbowtie": {
"name": "Rbowtie",
"version": "1.50.0",
"sha256": "13hlr09hshsgwf5694mhrmfxk3nqnl2c58bc4kjsrwngakbi1ziy",
"depends": []
},
"Rbowtie2": {
"name": "Rbowtie2",
"version": "2.16.0",
"sha256": "0gjicqyl3kmadm0ki2n22231dcx5dijj5wz50fkyc6n0a3xvgsx5",
"depends": ["Rsamtools", "magrittr"]
},
"RbowtieCuda": {
"name": "RbowtieCuda",
"version": "1.2.0",
"sha256": "05ca0wn7z44rkj885l5h1ybsjn4kl2x1gy9cy98p63gws1xwq6h0",
"depends": []
},
"Rbwa": {
"name": "Rbwa",
"version": "1.14.0",
"sha256": "1rkx6smq6cpi3ghcygvwvgq49d0grn3m0sw5jnl0mxqm8ygfr290",
"depends": []
},
"RcisTarget": {
"name": "RcisTarget",
"version": "1.29.0",
"sha256": "0y028c8vrfcqy9ddn7p4y285bjb3hw5n1rwax4ggwbf18cfk1ql2",
"depends": ["AUCell", "BiocGenerics", "GSEABase", "GenomeInfoDb", "GenomicRanges", "R_utils", "S4Vectors", "SummarizedExperiment", "arrow", "data_table", "dplyr", "tibble", "zoo"]
},
"Rcollectl": {
"name": "Rcollectl",
"version": "1.10.0",
"sha256": "0inkixnlvfs5qp8ywffaamvhk3mz2mcl3kcvvzs49jf4j7376lbh",
"depends": ["ggplot2", "lubridate", "processx"]
},
"Rcpi": {
"name": "Rcpi",
"version": "1.46.0",
"sha256": "1dx8im6525sj8496czmx346cw30ijyj9i8p0jzsvssw6994pnyz4",
"depends": ["Biostrings", "GOSemSim", "curl", "doParallel", "foreach", "httr2", "jsonlite", "rlang"]
},
"Rcwl": {
"name": "Rcwl",
"version": "1.26.0",
"sha256": "0a6i3g3da7zkrxqphvaamg10f3s7qjynhn65w3v342gdbbk67b1w",
"depends": ["BiocParallel", "DiagrammeR", "R_utils", "S4Vectors", "basilisk", "batchtools", "codetools", "shiny", "yaml"]
},
"RcwlPipelines": {
"name": "RcwlPipelines",
"version": "1.26.0",
"sha256": "01c95nxvwi6lhbvc33a3797hsvq7w6rswnxwg5v44fc1zg002mlf",
"depends": ["BiocFileCache", "Rcwl", "S4Vectors", "git2r", "httr", "rappdirs"]
},
"Rdisop": {
"name": "Rdisop",
"version": "1.70.0",
"sha256": "0jkm610772hyg63q5wmvrbwcbbyfzryii6ab37fv79qy7k56l8wn",
"depends": ["Rcpp"]
},
"ReUseData": {
"name": "ReUseData",
"version": "1.10.0",
"sha256": "1xzi5vnr7k6ijssp66ii95nswyly1c8yc76gqw6vhrgyzawwh503",
"depends": ["BiocFileCache", "Rcwl", "RcwlPipelines", "S4Vectors", "basilisk", "jsonlite", "yaml"]
},
"ReactomeGSA": {
"name": "ReactomeGSA",
"version": "1.24.0",
"sha256": "1nqz3xmxriybdx6yvdhah2sxz8mn44gplgssdcw5f9nl7aww9a0k",
"depends": ["Biobase", "BiocSingular", "RColorBrewer", "SummarizedExperiment", "dplyr", "ggplot2", "gplots", "httr", "igraph", "jsonlite", "progress", "tidyr"]
},
"ReactomePA": {
"name": "ReactomePA",
"version": "1.54.0",
"sha256": "0vh8knsczh537r9qk6h3jyabd6x4c4g2j7fz8qsflhl7bs20n4h9",
"depends": ["AnnotationDbi", "DOSE", "enrichplot", "ggplot2", "ggraph", "graphite", "gson", "igraph", "reactome_db", "yulab_utils"]
},
"ReadqPCR": {
"name": "ReadqPCR",
"version": "1.56.0",
"sha256": "1m5yh01f3xgvs5fbyxaagfx3q25sxc77z9mgr293rq4436zvsgyy",
"depends": ["Biobase"]
},
"RedeR": {
"name": "RedeR",
"version": "3.6.0",
"sha256": "0sqqhr9blgarvi7dxyxmk0ikj9grqj9zbz9yqb55qhr67mzl3d3i",
"depends": ["igraph", "scales"]
},
"RedisParam": {
"name": "RedisParam",
"version": "1.12.0",
"sha256": "0d88g6mxlifc86ar2695p5gjrbafc0vgjmbxayv9x0h5b0c9hg8z",
"depends": ["BiocParallel", "futile_logger", "redux", "withr"]
},
"ReducedExperiment": {
"name": "ReducedExperiment",
"version": "1.2.0",
"sha256": "114hwvqpfw0lf4hxjdmqsvmlsllzxvf8s3843nklz0pnhw8a1hxr",
"depends": ["BiocGenerics", "BiocParallel", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "WGCNA", "biomaRt", "car", "clusterProfiler", "ggplot2", "ica", "lme4", "lmerTest", "moments", "msigdbr", "patchwork", "pheatmap"]
},
"RegEnrich": {
"name": "RegEnrich",
"version": "1.20.0",
"sha256": "1q40yk4lmnyqwzj2mjrhl6gb03r20kyw8dy8543n5isbgd24i08d",
"depends": ["BiocParallel", "BiocSet", "BiocStyle", "DESeq2", "DOSE", "S4Vectors", "SummarizedExperiment", "WGCNA", "dplyr", "fgsea", "ggplot2", "limma", "magrittr", "randomForest", "reshape2", "tibble"]
},
"RegionalST": {
"name": "RegionalST",
"version": "1.8.0",
"sha256": "19cghwn3jff5d8zsswfq1rnj3fxc6w86n4xmxdyzw2ja7868lmv0",
"depends": ["BayesSpace", "BiocStyle", "RColorBrewer", "S4Vectors", "Seurat", "SingleCellExperiment", "SummarizedExperiment", "TOAST", "assertthat", "colorspace", "dplyr", "fgsea", "ggplot2", "gridExtra", "magrittr", "scater", "shiny", "tibble"]
},
"ReportingTools": {
"name": "ReportingTools",
"version": "2.50.0",
"sha256": "09bj554ygii77c04yf10lvsnkg2r3lngi238rh5zgwadi47rcy9w",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "Category", "DESeq2", "GOstats", "GSEABase", "IRanges", "PFAM_db", "R_utils", "XML", "annotate", "edgeR", "ggbio", "ggplot2", "hwriter", "knitr", "lattice", "limma"]
},
"ResidualMatrix": {
"name": "ResidualMatrix",
"version": "1.20.0",
"sha256": "14qx2yb0ahfjjmqlcirar51l5if8wh6v7g95bvr3n2ak2i3arzhb",
"depends": ["DelayedArray", "Matrix", "S4Vectors"]
},
"RgnTX": {
"name": "RgnTX",
"version": "1.11.1",
"sha256": "1va4nw2gbhkhrryfglc0chgp9ncgmjk8852sf6vgf4fq8jqla5a2",
"depends": ["GenomicFeatures", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "TxDb_Hsapiens_UCSC_hg19_knownGene", "ggplot2", "regioneR"]
},
"Rgraphviz": {
"name": "Rgraphviz",
"version": "2.54.0",
"sha256": "0mjv95nwfsak6wk0dnjp75n9xklynrbsvhhk6i3xaifgyg0d18pr",
"depends": ["graph"]
},
"Rhdf5lib": {
"name": "Rhdf5lib",
"version": "1.32.0",
"sha256": "1i0g82j7q6j1hp9c8vc6sv50ph1n028hpc8wfsifx4cc1w5hhvmy",
"depends": []
},
"Rhisat2": {
"name": "Rhisat2",
"version": "1.26.0",
"sha256": "01i6085rl7in0xslm872m1ahnj39hks3b2frplyxw6i5lznk66bf",
"depends": ["GenomicRanges", "SGSeq", "txdbmaker"]
},
"Rhtslib": {
"name": "Rhtslib",
"version": "3.6.0",
"sha256": "14k6v897ccah78lw41wd4c37wz048l2963sv3cvvgvrrpbgw0pwb",
"depends": []
},
"RiboCrypt": {
"name": "RiboCrypt",
"version": "1.16.0",
"sha256": "1l6lmr7w8sq6g95hqi9n4cdg9v8gbs2bscd4s57dlrnbx46y4ncy",
"depends": ["BiocGenerics", "BiocParallel", "Biostrings", "ComplexHeatmap", "DT", "GenomicFeatures", "GenomicRanges", "IRanges", "NGLVieweR", "ORFik", "RCurl", "Seqinfo", "bslib", "cowplot", "crosstalk", "data_table", "dplyr", "fst", "ggplot2", "htmlwidgets", "httr", "jsonlite", "knitr", "markdown", "plotly", "rclipboard", "rlang", "rtracklayer", "shiny", "shinyWidgets", "shinycssloaders", "shinyhelper", "shinyjqui", "shinyjs", "stringr", "writexl"]
},
"RiboDiPA": {
"name": "RiboDiPA",
"version": "1.18.0",
"sha256": "1cbfwwm1i67qhk8rnqvgpf18gz4dcmagxs06nff76r96kfvyp0gg",
"depends": ["BiocFileCache", "BiocGenerics", "DESeq2", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rcpp", "Rsamtools", "S4Vectors", "data_table", "doParallel", "elitism", "foreach", "ggplot2", "matrixStats", "qvalue", "reldist", "txdbmaker"]
},
"RiboProfiling": {
"name": "RiboProfiling",
"version": "1.39.1",
"sha256": "0yqmk7cgfahyiy4gcrfr4iyf9sa6sl42h41xaj65b4dx6mhgqrs9",
"depends": ["BiocGenerics", "Biostrings", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "data_table", "ggbio", "ggplot2", "plyr", "reshape2", "rtracklayer", "sqldf"]
},
"Rigraphlib": {
"name": "Rigraphlib",
"version": "1.2.0",
"sha256": "190h2gjwy913422c0j3b368bvf801nggqx6a620z05ivw2w1yad4",
"depends": ["biocmake"]
},
"Rmagpie": {
"name": "Rmagpie",
"version": "1.66.0",
"sha256": "12rkh9xwxgnpa46skin89z2w0xi352k539n7w4ybqbdlwfwwvqk3",
"depends": ["Biobase", "e1071", "kernlab", "pamr"]
},
"Rmmquant": {
"name": "Rmmquant",
"version": "1.28.0",
"sha256": "1qwch1kgws7zvgvxavyh885i0jfs24yl9qnmaav1xycl5zmw8dml",
"depends": ["BiocStyle", "DESeq2", "GenomicRanges", "Rcpp", "S4Vectors", "SummarizedExperiment", "TBX20BamSubset", "TxDb_Mmusculus_UCSC_mm9_knownGene", "apeglm", "devtools", "org_Mm_eg_db"]
},
"RnBeads": {
"name": "RnBeads",
"version": "2.28.0",
"sha256": "00vfljydr8f9y1d4vh08v2ziwyr7gb36kqzc5xc0nb3f2w66f80d",
"depends": ["BiocGenerics", "GenomicRanges", "IRanges", "MASS", "S4Vectors", "cluster", "ff", "fields", "ggplot2", "gplots", "gridExtra", "illuminaio", "limma", "matrixStats", "methylumi", "plyr", "reshape2"]
},
"RnaSeqSampleSize": {
"name": "RnaSeqSampleSize",
"version": "2.20.0",
"sha256": "18s1xqf3sfj0cicypq18d39znx5prsr5j3incgxrhh7nlcq2llkq",
"depends": ["KEGGREST", "Rcpp", "RnaSeqSampleSizeData", "SummarizedExperiment", "biomaRt", "dplyr", "edgeR", "ggplot2", "ggpubr", "heatmap3", "matlab", "recount", "tidyr", "tidyselect"]
},
"Rnits": {
"name": "Rnits",
"version": "1.44.0",
"sha256": "0a6sqz5bc605sw8wvz0jsy7xly8cz992vc9a667xkxsf6xa4a3wl",
"depends": ["Biobase", "affy", "boot", "ggplot2", "impute", "limma", "qvalue", "reshape2"]
},
"RolDE": {
"name": "RolDE",
"version": "1.14.0",
"sha256": "1bn0h9v27azw9gmdnbsa66mqg9jbw85cbcb0zv8kmxmycvgxnxwa",
"depends": ["ROTS", "SummarizedExperiment", "doParallel", "doRNG", "foreach", "matrixStats", "nlme", "qvalue", "rngtools"]
},
"Rqc": {
"name": "Rqc",
"version": "1.44.0",
"sha256": "1kprj05y5y5k78gdsffn0j9zjg8c466c9x50fqy7mfps4z9rdcwi",
"depends": ["BiocGenerics", "BiocParallel", "BiocStyle", "Biostrings", "GenomicAlignments", "GenomicFiles", "IRanges", "Rcpp", "Rsamtools", "S4Vectors", "ShortRead", "biovizBase", "ggplot2", "knitr", "markdown", "plyr", "reshape2", "shiny"]
},
"Rsamtools": {
"name": "Rsamtools",
"version": "2.26.0",
"sha256": "1sbb95xknaj2jks0wlcj1zr43i23l27j5mjsihyk9q1kxybhmnlw",
"depends": ["BiocGenerics", "BiocParallel", "Biostrings", "GenomicRanges", "IRanges", "Rhtslib", "S4Vectors", "Seqinfo", "XVector", "bitops"]
},
"Rsubread": {
"name": "Rsubread",
"version": "2.24.0",
"sha256": "14i2qm3wgzl8kj3d2kkppzlvvpkn27qggz6b44kwxhi5ns8rn7zq",
"depends": ["Matrix"]
},
"Rtpca": {
"name": "Rtpca",
"version": "1.20.0",
"sha256": "0971zm4rcva3q6bdz5zgbm5y9hsjhz5x52sjvaa7i624x4ajs1z3",
"depends": ["Biobase", "dplyr", "fdrtool", "ggplot2", "pROC", "tibble", "tidyr"]
},
"Rvisdiff": {
"name": "Rvisdiff",
"version": "1.8.0",
"sha256": "0ayzc1zprrlkv1hvzrc8x9h25v5rmfz1kkrkszvbn6gka7ka2zqf",
"depends": ["edgeR"]
},
"S4Arrays": {
"name": "S4Arrays",
"version": "1.10.0",
"sha256": "1vbvr0vfwl36i7dv09ibzs7mkfyzlzfl475rrkss377zsz7gbsjh",
"depends": ["BiocGenerics", "IRanges", "Matrix", "S4Vectors", "abind"]
},
"S4Vectors": {
"name": "S4Vectors",
"version": "0.48.0",
"sha256": "1vs1n92d915gpvrl4y867gym9q1rsz5b0pkajndy58c329zx4m2v",
"depends": ["BiocGenerics"]
},
"SAIGEgds": {
"name": "SAIGEgds",
"version": "2.10.0",
"sha256": "0y4zkdf6khicaxbm7d98pvbd083c4624cc290xc1sssxf8nxrahn",
"depends": ["CompQuadForm", "Matrix", "Rcpp", "RcppArmadillo", "RcppParallel", "SKAT", "SeqArray", "gdsfmt", "survey"]
},
"SANTA": {
"name": "SANTA",
"version": "2.46.0",
"sha256": "0saxpxbxwyzl4a8w7z550df5x1gzpg56si7hzv6r6v9arcc39i50",
"depends": ["Matrix", "igraph"]
},
"SBGNview": {
"name": "SBGNview",
"version": "1.24.0",
"sha256": "1qyxd55c1w8kv5dchjcl6kfg96sq52y7fvinxssq9dacwk0p698w",
"depends": ["AnnotationDbi", "KEGGREST", "Rdpack", "SBGNview_data", "SummarizedExperiment", "bookdown", "httr", "igraph", "knitr", "pathview", "rmarkdown", "rsvg", "xml2"]
},
"SBMLR": {
"name": "SBMLR",
"version": "2.6.0",
"sha256": "0qy698n59i9c4lhlc1nhs7p9pcg1c7y818vyw23piyk8x27rd2wq",
"depends": ["XML", "deSolve"]
},
"SC3": {
"name": "SC3",
"version": "1.38.0",
"sha256": "1ysxbarqrw8pbg2fm66nsyjxshi0c14svydwc3yj2ldlv25n7kmi",
"depends": ["BiocGenerics", "ROCR", "Rcpp", "RcppArmadillo", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "WriteXLS", "cluster", "doParallel", "doRNG", "e1071", "foreach", "ggplot2", "pheatmap", "robustbase", "rrcov", "shiny"]
},
"SCAN_UPC": {
"name": "SCAN.UPC",
"version": "2.52.0",
"sha256": "0kvzg4i7yl0d1p0plwzbisl6z3kjn46avaa86g5y9jxj4vwhgb9p",
"depends": ["Biobase", "Biostrings", "GEOquery", "IRanges", "MASS", "affy", "affyio", "foreach", "oligo", "sva"]
},
"SCANVIS": {
"name": "SCANVIS",
"version": "1.24.0",
"sha256": "10a7iw5iqmnlhn74000gbaqnbkp98l0ar4cin8fqgrbmj5fmm0ha",
"depends": ["IRanges", "RCurl", "plotrix", "rtracklayer"]
},
"SCArray": {
"name": "SCArray",
"version": "1.18.0",
"sha256": "1bxbjl5445glqj6vsl6i0z1rrkc6k91glhg343ykzz2hhjz6xifd",
"depends": ["BiocParallel", "BiocSingular", "DelayedArray", "DelayedMatrixStats", "Matrix", "S4Vectors", "SingleCellExperiment", "SparseArray", "SummarizedExperiment", "gdsfmt"]
},
"SCArray_sat": {
"name": "SCArray.sat",
"version": "1.9.0",
"sha256": "0yd5pinqbdi5pq1vcbabwqnwhw3vrk3qbdyrqi82hib5zqxzw9zr",
"depends": ["BiocGenerics", "BiocParallel", "BiocSingular", "DelayedArray", "Matrix", "S4Vectors", "SCArray", "Seurat", "SeuratObject", "SummarizedExperiment", "gdsfmt"]
},
"SCBN": {
"name": "SCBN",
"version": "1.28.0",
"sha256": "0snnmajjqlrnpcib472i0g9kbsxw9f63gxjj0i58x4xpw9skia57",
"depends": []
},
"SCFA": {
"name": "SCFA",
"version": "1.20.0",
"sha256": "0p9i44qbff4xwrr7l1v9p7limwn7ahdx0ca47alqqz6nkig36kbr",
"depends": ["BiocParallel", "Matrix", "RhpcBLASctl", "cluster", "coro", "glmnet", "igraph", "matrixStats", "psych", "survival", "torch"]
},
"SCOPE": {
"name": "SCOPE",
"version": "1.22.0",
"sha256": "0jf4xd23cx4xafjzcd7jdlk2m57sa3v62fc3zlh71gpz9vbgc82n",
"depends": ["BSgenome", "BSgenome_Hsapiens_UCSC_hg19", "BiocGenerics", "Biostrings", "DNAcopy", "DescTools", "GenomeInfoDb", "GenomicRanges", "IRanges", "RColorBrewer", "Rsamtools", "S4Vectors", "doParallel", "foreach", "gplots"]
},
"SCnorm": {
"name": "SCnorm",
"version": "1.32.0",
"sha256": "17shqmq81na16wkd7dfjajrhv0mi8zmb9nf5cjns3s4ja2392pja",
"depends": ["BiocGenerics", "BiocParallel", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "cluster", "data_table", "forcats", "ggplot2", "moments", "quantreg"]
},
"SDAMS": {
"name": "SDAMS",
"version": "1.30.0",
"sha256": "1arr0ld2nr6iqqc1h9v35cpn5zllbbqbbhjza6m2jrwgx7b6j973",
"depends": ["SummarizedExperiment", "qvalue", "trust"]
},
"SELEX": {
"name": "SELEX",
"version": "1.42.0",
"sha256": "0mpggx9dbq16s5c7qpx5rgbjim5a9hs899fmf65v1slgbnikwazq",
"depends": ["Biostrings", "rJava"]
},
"SETA": {
"name": "SETA",
"version": "1.0.0",
"sha256": "00i8cg086iv31bri3b3pwiz8ajxyxnnszarinsdcr3kan2gaaxa6",
"depends": ["MASS", "Matrix", "SingleCellExperiment", "dplyr", "rlang", "tidygraph"]
},
"SEraster": {
"name": "SEraster",
"version": "1.2.0",
"sha256": "0ff953kwyq9flmnbpyyfal4n8p4j29ha1c4blr1l317m7sj6idcf",
"depends": ["BiocParallel", "Matrix", "SpatialExperiment", "SummarizedExperiment", "ggplot2", "rearrr", "sf"]
},
"SEtools": {
"name": "SEtools",
"version": "1.24.0",
"sha256": "1j161pgm0gb59hw8x8r60zxh1xn20wp8qkw3ls6pvryjgxiqm1ky",
"depends": ["BiocParallel", "DESeq2", "Matrix", "S4Vectors", "SummarizedExperiment", "circlize", "data_table", "edgeR", "openxlsx", "pheatmap", "sechm", "sva"]
},
"SGSeq": {
"name": "SGSeq",
"version": "1.44.0",
"sha256": "04sk9q7v22p1hc7znaa2fn390y5pn1nj0ayjb0b3746klsyxxc11",
"depends": ["AnnotationDbi", "BiocGenerics", "Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "RUnit", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "igraph", "rtracklayer"]
},
"SIAMCAT": {
"name": "SIAMCAT",
"version": "2.14.0",
"sha256": "0czzgi1kxy4la4kbw7s6px53lp6wzkdmqlpc675q90c1nmqja1y1",
"depends": ["LiblineaR", "PRROC", "RColorBrewer", "beanplot", "corrplot", "glmnet", "gridBase", "gridExtra", "infotheo", "lgr", "lmerTest", "matrixStats", "mlr3", "mlr3learners", "mlr3tuning", "pROC", "paradox", "phyloseq", "progress", "scales", "stringr"]
},
"SICtools": {
"name": "SICtools",
"version": "1.40.0",
"sha256": "0qrs93igg20i2zk7gcmgw54q0khp9ak7b0q6bvm7l3hjkl0lipdb",
"depends": ["Biostrings", "GenomicRanges", "IRanges", "Rsamtools", "doParallel", "matrixStats", "plyr", "stringr"]
},
"SIM": {
"name": "SIM",
"version": "1.80.0",
"sha256": "1hy4ik6mac7rqchcr3pssj41lsgkfcw0mifkgkhw3sw43bfnh611",
"depends": ["globaltest", "quantreg", "quantsmooth"]
},
"SIMAT": {
"name": "SIMAT",
"version": "1.42.0",
"sha256": "1bwwip4wszs39yhdpwl14vcfrlq1aav1gmiijwnx5fl77vcfais5",
"depends": ["Rcpp", "ggplot2", "mzR", "reshape2"]
},
"SIMD": {
"name": "SIMD",
"version": "1.28.0",
"sha256": "100z1ib7s739piwazppjrg7jpxfmqwd2kwahwxkjxj14pbc5gfhq",
"depends": ["edgeR", "methylMnM", "statmod"]
},
"SIMLR": {
"name": "SIMLR",
"version": "1.36.0",
"sha256": "1fxd14kf4ai2hm9nxragqisckca5spkk8slc4biy2viqj90nvvy2",
"depends": ["Matrix", "RSpectra", "Rcpp", "RcppAnnoy", "pracma"]
},
"SLqPCR": {
"name": "SLqPCR",
"version": "1.76.0",
"sha256": "0861cnnq1yybmq7gac2n2q6gfap3sfadacpdxzc73iqx54a6p2gf",
"depends": []
},
"SMAD": {
"name": "SMAD",
"version": "1.26.0",
"sha256": "0hh4lxrylmrn50211n3ggc2n4qgbcwh1qxrqbj7xwr2ficxym28b",
"depends": ["Rcpp", "RcppAlgos", "dplyr", "magrittr", "tidyr"]
},
"SMITE": {
"name": "SMITE",
"version": "1.38.0",
"sha256": "01x1wla1pqb361c75fjm4c5k7aajlw3l82ln5bbv9b8zmyjj54sv",
"depends": ["AnnotationDbi", "BioNet", "Biobase", "GenomicRanges", "Hmisc", "IRanges", "KEGGREST", "S4Vectors", "geneLenDataBase", "ggplot2", "goseq", "igraph", "org_Hs_eg_db", "plyr", "reactome_db", "scales"]
},
"SNAGEE": {
"name": "SNAGEE",
"version": "1.50.0",
"sha256": "1zpk0nklf83vjr1wganx0qzkz0ypkd485zffgpr726zcz14bixjl",
"depends": ["SNAGEEdata"]
},
"SNPRelate": {
"name": "SNPRelate",
"version": "1.44.0",
"sha256": "1xzvrasba81a51wc48gdh82qga9a43hjx79cdw7jgb9vsn6w4iha",
"depends": ["RhpcBLASctl", "gdsfmt"]
},
"SNPediaR": {
"name": "SNPediaR",
"version": "1.36.0",
"sha256": "1kis54hb6nm2hbyrpxf5cr02a1iq2bdgnxx7zak389mrsy54gv1n",
"depends": ["RCurl", "jsonlite"]
},
"SNPhood": {
"name": "SNPhood",
"version": "1.40.0",
"sha256": "1fy444c7qp1d47321jc4q5mzki53angwrxp2j0b9bswpi7aw79vj",
"depends": ["BiocGenerics", "BiocParallel", "Biostrings", "DESeq2", "GenomeInfoDb", "GenomicRanges", "IRanges", "RColorBrewer", "Rsamtools", "S4Vectors", "SummarizedExperiment", "VariantAnnotation", "checkmate", "cluster", "data_table", "ggplot2", "gridExtra", "lattice", "reshape2", "scales"]
},
"SOMNiBUS": {
"name": "SOMNiBUS",
"version": "1.18.0",
"sha256": "1ccskmmrcpl28amnh7nj2pkpa00vahrhg7c61vdgrl7mrym1kd9c",
"depends": ["BiocManager", "GenomeInfoDb", "GenomicRanges", "IRanges", "Matrix", "S4Vectors", "VGAM", "annotatr", "bsseq", "data_table", "ggplot2", "mgcv", "reshape2", "rtracklayer", "tidyr", "yaml"]
},
"SPEM": {
"name": "SPEM",
"version": "1.50.0",
"sha256": "0js9l4rgqbbd95hn872mfz27hag5yg5jp58rbvydxjz4w9x8883b",
"depends": ["Biobase", "Rsolnp"]
},
"SPIA": {
"name": "SPIA",
"version": "2.62.0",
"sha256": "0dl139352p1xl72i7189y40hfk2i6q4nf2s01rwdjgris9sihc2a",
"depends": ["KEGGgraph"]
},
"SPIAT": {
"name": "SPIAT",
"version": "1.12.0",
"sha256": "1y5j6sh5ls10w491sjrb99m80mwh29bdwkg97r3ykyh09wk2w5dq",
"depends": ["RANN", "SpatialExperiment", "SummarizedExperiment", "apcluster", "dbscan", "dittoSeq", "dplyr", "ggplot2", "gridExtra", "gtools", "mmand", "pracma", "raster", "reshape2", "rlang", "sp", "spatstat_explore", "spatstat_geom", "tibble", "vroom"]
},
"SPICEY": {
"name": "SPICEY",
"version": "1.0.0",
"sha256": "1qvwn27dnvyal8kjk5aj619ln4p64jnpi8b73cp4jjad67cibzlw",
"depends": ["AnnotationDbi", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "S4Vectors", "cowplot", "dplyr", "ggplot2", "scales", "tibble", "tidyr"]
},
"SPLINTER": {
"name": "SPLINTER",
"version": "1.36.0",
"sha256": "05iikzwbk7qaw37p1kg18shwk6p84rvhxdnjrvi30bla20abgh2w",
"depends": ["BSgenome_Mmusculus_UCSC_mm9", "Biostrings", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "Gviz", "IRanges", "S4Vectors", "Seqinfo", "biomaRt", "ggplot2", "googleVis", "plyr", "pwalign", "seqLogo", "stringr"]
},
"SPONGE": {
"name": "SPONGE",
"version": "1.32.0",
"sha256": "1xqynqv006jz4kdz5iq9hmpqdrc32zi2lk50gmyw0ckgixapyxp4",
"depends": ["Biobase", "ComplexHeatmap", "MASS", "MetBrewer", "biomaRt", "caret", "cvms", "data_table", "doRNG", "dplyr", "expm", "foreach", "gRbase", "ggplot2", "ggpubr", "ggridges", "glmnet", "igraph", "iterators", "logging", "ppcor", "randomForest", "rlang", "stringr", "tidyr", "tidyverse", "tnet"]
},
"SPOTlight": {
"name": "SPOTlight",
"version": "1.14.0",
"sha256": "1bnwss0rk2psy0l0imlgvvb6vq76f0kjzsr9nc5g9x001k7ic5n8",
"depends": ["Matrix", "Rcpp", "RcppEigen", "SingleCellExperiment", "ggplot2", "sparseMatrixStats"]
},
"SPsimSeq": {
"name": "SPsimSeq",
"version": "1.20.0",
"sha256": "106apmdmd8cclfdfbx8n9mkniwvaz3h7psjryylbsxr1cqbxac1a",
"depends": ["Hmisc", "SingleCellExperiment", "WGCNA", "edgeR", "fitdistrplus", "limma", "mvtnorm", "phyloseq"]
},
"SRAdb": {
"name": "SRAdb",
"version": "1.72.0",
"sha256": "0wkma09cj3x4wwk7847ka2g0gqpch8dg0hqcs63p58wx2wmprfq4",
"depends": ["RCurl", "RSQLite", "R_utils", "graph"]
},
"STADyUM": {
"name": "STADyUM",
"version": "1.0.0",
"sha256": "145qwzg0n88jdlgr0pfvnhmrk92f6hkfl3sq31vi0b3rlmazaw1f",
"depends": ["GenomeInfoDb", "GenomicRanges", "IRanges", "MASS", "Rcpp", "S4Vectors", "data_table", "dplyr", "ggplot2", "plyranges", "progress", "purrr", "rlang", "rtracklayer", "tibble", "tidyr"]
},
"STATegRa": {
"name": "STATegRa",
"version": "1.46.0",
"sha256": "010ik7iv37dcasbz75j9150l2vkxcwzkhrvf9r0if8wrg1n26m81",
"depends": ["Biobase", "MASS", "affy", "calibrate", "edgeR", "foreach", "ggplot2", "gplots", "gridExtra", "limma"]
},
"STRINGdb": {
"name": "STRINGdb",
"version": "2.22.0",
"sha256": "1wr0jl0yk1739yyy2j5b9l3kc5rmbxwpky2hmpv4nq0ykz9lbxqx",
"depends": ["RColorBrewer", "gplots", "hash", "httr", "igraph", "plotrix", "plyr", "png", "sqldf"]
},
"SUITOR": {
"name": "SUITOR",
"version": "1.12.0",
"sha256": "161dvlf9jsa1334dbs71ddy6bk4yiwhx47c5yhb6xkswjl6zm0q3",
"depends": ["BiocParallel", "ggplot2"]
},
"SVMDO": {
"name": "SVMDO",
"version": "1.10.0",
"sha256": "0yjsn8ipz9fq6cy8z1f9yxd6zdha6zj4b6db2kms5cjrclggy98y",
"depends": ["AnnotationDbi", "BSDA", "DOSE", "DT", "SummarizedExperiment", "caTools", "caret", "data_table", "dplyr", "e1071", "golem", "klaR", "nortest", "org_Hs_eg_db", "shiny", "shinyFiles", "shinytitle", "sjmisc", "survival"]
},
"SVP": {
"name": "SVP",
"version": "1.2.0",
"sha256": "0735sjwwb00y77f7wai6aw4gqvjvac6s8979ppy3g7av46wmi12l",
"depends": ["BiocGenerics", "BiocNeighbors", "BiocParallel", "DelayedMatrixStats", "Matrix", "Rcpp", "RcppArmadillo", "RcppEigen", "RcppParallel", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "cli", "deldir", "dplyr", "dqrng", "fastmatch", "ggfun", "ggplot2", "ggstar", "ggtree", "pracma", "rlang", "withr"]
},
"SWATH2stats": {
"name": "SWATH2stats",
"version": "1.40.0",
"sha256": "1ds8ra2jr31hdp2ym65vgqsp79ipgv01q6qrhx4rnsn2jh95gvlq",
"depends": ["biomaRt", "data_table", "ggplot2", "reshape2"]
},
"SamSPECTRAL": {
"name": "SamSPECTRAL",
"version": "1.64.0",
"sha256": "1ncxkzydr5d0xca7jikif6s68m5ah6bnk7qg45cf1svicar4k0j1",
"depends": []
},
"SanityR": {
"name": "SanityR",
"version": "1.0.0",
"sha256": "0a7zayilxgw7fzqqk8b9f3q6r3chagkmy5bxyai0ylsxg49202sw",
"depends": ["BiocGenerics", "BiocParallel", "MatrixGenerics", "Rcpp", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "scuttle"]
},
"Scale4C": {
"name": "Scale4C",
"version": "1.32.0",
"sha256": "063h796ywzzp92avhvjhdbmzd7z4a3rm2rvb60sigkbbb1636scj",
"depends": ["GenomicRanges", "IRanges", "SummarizedExperiment", "smoothie"]
},
"ScaledMatrix": {
"name": "ScaledMatrix",
"version": "1.18.0",
"sha256": "1bzbqszkfwwa8jgd5d0yb8jx84g400svfk7b0vrm45n6vng9279g",
"depends": ["DelayedArray", "Matrix", "S4Vectors"]
},
"Sconify": {
"name": "Sconify",
"version": "1.30.0",
"sha256": "1py4q8w8y8f1sr4qrpaknmw52sc8sls5zhm2ycrsdkhfwyswcvvm",
"depends": ["FNN", "Rtsne", "dplyr", "flowCore", "ggplot2", "magrittr", "readr", "tibble"]
},
"SemDist": {
"name": "SemDist",
"version": "1.44.0",
"sha256": "0hlfyfkiizfyh1fy0b5xy19k3253ib0m1fqb542rdayzfk8qhn48",
"depends": ["AnnotationDbi", "GO_db", "annotate"]
},
"SeqArray": {
"name": "SeqArray",
"version": "1.50.0",
"sha256": "0p749sf2smc8j59qs5k3vkxlf5h2zws8q40vrnhv1svl1j1gc17d",
"depends": ["Biostrings", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "digest", "gdsfmt"]
},
"SeqGSEA": {
"name": "SeqGSEA",
"version": "1.50.0",
"sha256": "02xzwpn95q1dp7a2hd2rhrs7zd8z64d7f6w7ksabxbm3vsmwzrlm",
"depends": ["Biobase", "DESeq2", "biomaRt", "doParallel"]
},
"SeqGate": {
"name": "SeqGate",
"version": "1.20.0",
"sha256": "1yzq4clc9xvh2zfn1g5jmp19sj7l3na78nzzjgpf6q2q64r93igc",
"depends": ["BiocManager", "GenomicRanges", "S4Vectors", "SummarizedExperiment"]
},
"SeqSQC": {
"name": "SeqSQC",
"version": "1.32.0",
"sha256": "0vx3xh0hk3yqv1fyimpwq04kvmzw6hqw8879f6ri3019vszl0apa",
"depends": ["ExperimentHub", "GGally", "GenomicRanges", "IRanges", "RColorBrewer", "S4Vectors", "SNPRelate", "e1071", "gdsfmt", "ggplot2", "plotly", "reshape2", "rmarkdown"]
},
"SeqVarTools": {
"name": "SeqVarTools",
"version": "1.48.0",
"sha256": "1ldvppx94wvahislg39hc3b4m45qdzpm8nbg2c77iv9w1b3411z8",
"depends": ["Biobase", "BiocGenerics", "GWASExactHW", "GenomicRanges", "IRanges", "Matrix", "S4Vectors", "SeqArray", "data_table", "gdsfmt", "logistf"]
},
"Seqinfo": {
"name": "Seqinfo",
"version": "1.0.0",
"sha256": "10jd4f4qvk4f2z4x9x6663fanh1mb0sxk9xs8giwbw1yb6jrab6p",
"depends": ["BiocGenerics", "IRanges", "S4Vectors"]
},
"SharedObject": {
"name": "SharedObject",
"version": "1.24.0",
"sha256": "0wlhhnvy9hr9z6xsd24pz3y8yw32y4nmv0dn25rfcsai2a2wd7vp",
"depends": ["BH", "BiocGenerics", "Rcpp"]
},
"ShortRead": {
"name": "ShortRead",
"version": "1.68.0",
"sha256": "16vjfqsj5mjzq8sh8px6qkcq6d9r95vnp77cgqxm80gqrqny9bj2",
"depends": ["Biobase", "BiocGenerics", "BiocParallel", "Biostrings", "GenomicAlignments", "GenomicRanges", "IRanges", "Rhtslib", "Rsamtools", "S4Vectors", "Seqinfo", "XVector", "hwriter", "lattice", "latticeExtra", "pwalign"]
},
"SiPSiC": {
"name": "SiPSiC",
"version": "1.10.0",
"sha256": "1mm1a65vb51fzfziyia8dijlrinhlf8p1mvk0cvjh8pvdd6rjcm3",
"depends": ["Matrix", "SingleCellExperiment"]
},
"SigCheck": {
"name": "SigCheck",
"version": "2.42.0",
"sha256": "01cz1xdb7fmlvky67jj1msmyjphc85qahh29rrai36xckbmy6rka",
"depends": ["Biobase", "BiocParallel", "MLInterfaces", "e1071", "survival"]
},
"SigsPack": {
"name": "SigsPack",
"version": "1.24.0",
"sha256": "0j6lxlrvphhhm05dh1h7b48dqjrshalf81icdb3b0ggdqvymkrxz",
"depends": ["BSgenome", "Biobase", "Biostrings", "GenomeInfoDb", "GenomicRanges", "SummarizedExperiment", "VariantAnnotation", "quadprog", "rtracklayer"]
},
"SimBu": {
"name": "SimBu",
"version": "1.12.0",
"sha256": "1cp4w554pmlq4kgbpaimdgk7gg7qwwfkcihawg1lg2nyb7l00sfj",
"depends": ["BiocParallel", "Matrix", "RColorBrewer", "RCurl", "SummarizedExperiment", "basilisk", "data_table", "dplyr", "ggplot2", "phyloseq", "proxyC", "reticulate", "sparseMatrixStats", "tidyr"]
},
"SimFFPE": {
"name": "SimFFPE",
"version": "1.22.0",
"sha256": "139vs9n9ybps7i2gcs5q5vh18njifaz2xc50nrj30s7pspxyiib5",
"depends": ["Biostrings", "GenomicRanges", "IRanges", "Rsamtools", "doParallel", "dplyr", "foreach", "truncnorm"]
},
"SingleCellAlleleExperiment": {
"name": "SingleCellAlleleExperiment",
"version": "1.6.0",
"sha256": "1il9xdp8vv0sa9cdssv8n34knpiyqbixcmxnf048c576z9pyvzjb",
"depends": ["BiocParallel", "DelayedArray", "Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment"]
},
"SingleCellExperiment": {
"name": "SingleCellExperiment",
"version": "1.32.0",
"sha256": "0a8p3i9zhgzl6lmms1l4nndjgm8czzjp70gj7q13zh26cb3hiyg3",
"depends": ["BiocGenerics", "DelayedArray", "GenomicRanges", "S4Vectors", "SummarizedExperiment"]
},
"SingleCellSignalR": {
"name": "SingleCellSignalR",
"version": "2.0.0",
"sha256": "0pxpa1af6d6rkc33yxbal9g6lv9r4h2ikkwlvmlm0cznb6n466mc",
"depends": ["BulkSignalR", "foreach", "ggplot2", "matrixStats", "matrixTests"]
},
"SingleMoleculeFootprinting": {
"name": "SingleMoleculeFootprinting",
"version": "2.4.0",
"sha256": "1gxk7msqac2qq0m9p4hr9gvxvz8gilz1cn3g4vca49mslxcjlhpy",
"depends": ["BSgenome", "BiocGenerics", "Biostrings", "GenomicRanges", "IRanges", "Matrix", "QuasR", "RColorBrewer", "S4Vectors", "Seqinfo", "cluster", "dplyr", "ggplot2", "ggpointdensity", "ggrepel", "magrittr", "miscTools", "parallelDist", "patchwork", "plyranges", "qs", "rlang", "stringr", "tibble", "tidyr", "viridis"]
},
"SingleR": {
"name": "SingleR",
"version": "2.12.0",
"sha256": "0f7bfvyff044sf5dbgv3pfprl9qlgi16h737pfb0kq643s8ml45p",
"depends": ["BiocNeighbors", "BiocParallel", "DelayedArray", "DelayedMatrixStats", "Matrix", "Rcpp", "S4Vectors", "SummarizedExperiment", "assorthead", "beachmat"]
},
"Site2Target": {
"name": "Site2Target",
"version": "1.2.0",
"sha256": "06nyf7vg22nhw2qk65ywl2za1850kjh1w7d9s55j7zk91fgfy93d",
"depends": ["BiocGenerics", "GenomeInfoDb", "GenomicRanges", "IRanges", "MASS", "S4Vectors"]
},
"SmartPhos": {
"name": "SmartPhos",
"version": "1.0.0",
"sha256": "15ixzx0ps69wnyz51d492lyxca5rklrp82l8g0wf7k72h3jah8kj",
"depends": ["Biobase", "BiocParallel", "DT", "MsCoreUtils", "MultiAssayExperiment", "SummarizedExperiment", "XML", "cowplot", "data_table", "decoupleR", "doParallel", "doRNG", "dplyr", "e1071", "factoextra", "ggbeeswarm", "ggplot2", "imputeLCMD", "limma", "magrittr", "matrixStats", "missForest", "pheatmap", "piano", "plotly", "proDA", "rlang", "shiny", "shinyBS", "shinyWidgets", "shinyjs", "shinythemes", "stringr", "tibble", "tidyr", "vsn"]
},
"SomaticSignatures": {
"name": "SomaticSignatures",
"version": "2.46.0",
"sha256": "1y6fcipzwnik016r6zllyi8ki9nqaz8hbx68rya5wdg16x3vngfp",
"depends": ["Biobase", "Biostrings", "GenomicRanges", "IRanges", "NMF", "S4Vectors", "Seqinfo", "VariantAnnotation", "ggbio", "ggplot2", "pcaMethods", "proxy", "reshape2"]
},
"SpaNorm": {
"name": "SpaNorm",
"version": "1.4.0",
"sha256": "0g4899p805scvgjqar5fyqrxc0ysah83gi6waaz482hdlcdxkyp7",
"depends": ["Matrix", "S4Vectors", "SeuratObject", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "edgeR", "ggplot2", "matrixStats", "rlang", "scran"]
},
"SpaceMarkers": {
"name": "SpaceMarkers",
"version": "2.0.0",
"sha256": "0xq2scbk6xb87r7zl93f62rl90f9wvypn9mda2c88qkzlv76m20i",
"depends": ["Matrix", "RColorBrewer", "ape", "circlize", "dplyr", "effsize", "ggplot2", "hdf5r", "jsonlite", "matrixStats", "matrixTests", "mixtools", "nanoparquet", "qvalue", "readbitmap", "reshape2", "rlang", "rstatix", "spatstat_explore", "spatstat_geom", "viridis"]
},
"SpaceTrooper": {
"name": "SpaceTrooper",
"version": "1.0.0",
"sha256": "1xi8vzy975j6m7vgh9hxc5ifl6sj5m39fnaj4l8hxxqwxac7gkl5",
"depends": ["DropletUtils", "S4Vectors", "SpatialExperiment", "SpatialExperimentIO", "SummarizedExperiment", "arrow", "cowplot", "data_table", "dplyr", "e1071", "ggplot2", "ggpubr", "glmnet", "rhdf5", "rlang", "robustbase", "scater", "scuttle", "sf", "sfheaders"]
},
"Spaniel": {
"name": "Spaniel",
"version": "1.24.0",
"sha256": "0vrhfmfgqs3am9d1c9mnl1nprpg25pgv5g54whpf11zd16vy9p0c",
"depends": ["DropletUtils", "S4Vectors", "Seurat", "SingleCellExperiment", "SummarizedExperiment", "dplyr", "ggplot2", "igraph", "jpeg", "jsonlite", "magrittr", "png", "scater", "scran", "shiny"]
},
"SparseArray": {
"name": "SparseArray",
"version": "1.10.0",
"sha256": "1pywjz9pgy30iph6nq7nwdpqm6q980hxrb9qhz9c4ba9kgwk4pb6",
"depends": ["BiocGenerics", "IRanges", "Matrix", "MatrixGenerics", "S4Arrays", "S4Vectors", "XVector", "matrixStats"]
},
"SparseSignatures": {
"name": "SparseSignatures",
"version": "2.20.0",
"sha256": "1vy8gj0walh890rxj0hi84331i7gzkvk5dhafdg5mk7czmx4r80l",
"depends": ["BSgenome", "Biostrings", "GenomeInfoDb", "GenomicRanges", "IRanges", "NMF", "RhpcBLASctl", "data_table", "ggplot2", "gridExtra", "nnlasso", "nnls", "reshape2"]
},
"SpatialCPie": {
"name": "SpatialCPie",
"version": "1.26.0",
"sha256": "08lyfgvdm585c2xc0k5mlfpmf2zndrvjs6im277zf7nl5rcg2mly",
"depends": ["SummarizedExperiment", "colorspace", "data_table", "digest", "dplyr", "ggforce", "ggiraph", "ggplot2", "ggrepel", "igraph", "lpSolve", "purrr", "readr", "rlang", "shiny", "shinyWidgets", "shinycssloaders", "shinyjs", "tibble", "tidyr", "tidyselect", "zeallot"]
},
"SpatialDecon": {
"name": "SpatialDecon",
"version": "1.20.0",
"sha256": "0y5wn3vi5a50c3745qxspxq89xj4j3bb0f2sj193j5qnyycli4px",
"depends": ["Biobase", "GeomxTools", "Matrix", "SeuratObject", "logNormReg", "repmis"]
},
"SpatialExperiment": {
"name": "SpatialExperiment",
"version": "1.20.0",
"sha256": "1gnascjas2gz4h40gh9s1vf33cy6r85zq6l7lc8a2d9ifyp0pm0c",
"depends": ["BiocFileCache", "BiocGenerics", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "magick", "rjson"]
},
"SpatialExperimentIO": {
"name": "SpatialExperimentIO",
"version": "1.2.0",
"sha256": "1gffisk37lr1awxymjwa6k0wcsd6clfpnkswrgsr2z5j2ifw04ky",
"depends": ["DropletUtils", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "arrow", "data_table", "purrr"]
},
"SpatialFeatureExperiment": {
"name": "SpatialFeatureExperiment",
"version": "1.11.1",
"sha256": "0ps7fnjykpk630f6sffdavidg76rnjdwmcs759lvq0c17b3gscsr",
"depends": ["Biobase", "BiocGenerics", "BiocNeighbors", "BiocParallel", "DropletUtils", "EBImage", "Matrix", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "data_table", "lifecycle", "rjson", "rlang", "sf", "sfheaders", "spatialreg", "spdep", "terra", "zeallot"]
},
"SpatialOmicsOverlay": {
"name": "SpatialOmicsOverlay",
"version": "1.10.0",
"sha256": "0bqgyfq67d87zdrplgqjzk9dj33ha3g6hzhar7g031wqxgas38r2",
"depends": ["Biobase", "BiocFileCache", "EBImage", "GeomxTools", "RBioFormats", "S4Vectors", "XML", "base64enc", "data_table", "dplyr", "ggplot2", "ggtext", "magick", "pbapply", "plotrix", "readxl", "scattermore", "stringr"]
},
"SpeCond": {
"name": "SpeCond",
"version": "1.64.0",
"sha256": "088lwcy7qgbsr311r31fqyhvx13y7x2kr416z6c7kylh1l3qlbfb",
"depends": ["Biobase", "RColorBrewer", "fields", "hwriter", "mclust"]
},
"Spectra": {
"name": "Spectra",
"version": "1.20.0",
"sha256": "0ajaxgsvg6aav2l74zmar76pwbjnrzd5sv8xv20v3jdcnwq33ghw",
"depends": ["BiocGenerics", "BiocParallel", "IRanges", "MetaboCoreUtils", "MsCoreUtils", "ProtGenerics", "S4Vectors", "fs"]
},
"SpectraQL": {
"name": "SpectraQL",
"version": "1.4.0",
"sha256": "1md9sdqh9f5wca54a47nfj7lhcv6gf0z0g5xhfchqrzb88ldr5g1",
"depends": ["MsCoreUtils", "ProtGenerics", "Spectra"]
},
"SpectralTAD": {
"name": "SpectralTAD",
"version": "1.26.0",
"sha256": "0l07d7hyamcjias3gcgb0gkgbrf8ha7d7lmzp3k121vydsg1drqa",
"depends": ["BiocParallel", "GenomicRanges", "HiCcompare", "Matrix", "PRIMME", "cluster", "dplyr", "magrittr"]
},
"SpectriPy": {
"name": "SpectriPy",
"version": "1.0.0",
"sha256": "0k96x0nijgw01d0x0irbnj1ia0i046zbndf4j7fhk4fqpc79qakl",
"depends": ["IRanges", "MsCoreUtils", "ProtGenerics", "S4Vectors", "Spectra", "reticulate"]
},
"SpliceWiz": {
"name": "SpliceWiz",
"version": "1.12.0",
"sha256": "02g7h7yaqkallwalx57w9hli02xzar2bcvqv06sx63jpfaar34xv",
"depends": ["AnnotationHub", "BSgenome", "BiocFileCache", "BiocGenerics", "BiocParallel", "Biostrings", "DT", "DelayedArray", "DelayedMatrixStats", "GenomeInfoDb", "GenomicRanges", "HDF5Array", "IRanges", "NxtIRFdata", "RColorBrewer", "RSQLite", "R_utils", "Rcpp", "RcppProgress", "S4Vectors", "SummarizedExperiment", "data_table", "fst", "genefilter", "ggplot2", "h5mread", "heatmaply", "htmltools", "httr", "magrittr", "matrixStats", "ompBAM", "patchwork", "pheatmap", "plotly", "progress", "rhandsontable", "rhdf5", "rtracklayer", "rvest", "scales", "shiny", "shinyFiles", "shinyWidgets", "shinydashboard", "stringi"]
},
"SplicingFactory": {
"name": "SplicingFactory",
"version": "1.18.0",
"sha256": "12iswmi8mzz3kbbjr2lf02p35gvbzds588i59msyw4803vravdlh",
"depends": ["SummarizedExperiment"]
},
"SplicingGraphs": {
"name": "SplicingGraphs",
"version": "1.49.1",
"sha256": "1bi722gg24lv2rljps4gpkaqa560z39q76wzqf03zp08616fgfkm",
"depends": ["BiocGenerics", "BiocParallel", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rgraphviz", "Rsamtools", "S4Vectors", "Seqinfo", "graph", "igraph"]
},
"SplineDV": {
"name": "SplineDV",
"version": "1.2.0",
"sha256": "0nf35ljh2hrh05x3a5fj273ibd7knm390li6na5maq763vyvx4zb",
"depends": ["Biobase", "BiocGenerics", "Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "dplyr", "plotly", "scuttle", "sparseMatrixStats"]
},
"SpotClean": {
"name": "SpotClean",
"version": "1.12.0",
"sha256": "0y4cbv5hcz9q4wcgx4hr66998bpzxlsdlgski2wca6ag604ryxjy",
"depends": ["Matrix", "RColorBrewer", "S4Vectors", "Seurat", "SpatialExperiment", "SummarizedExperiment", "dplyr", "ggplot2", "readbitmap", "rhdf5", "rjson", "rlang", "tibble", "viridis"]
},
"SpotSweeper": {
"name": "SpotSweeper",
"version": "1.6.0",
"sha256": "16f6dqafv7lps5k5lnjzd612fcgkhlpl13l89p5036qxmfhwxvmi",
"depends": ["BiocNeighbors", "BiocParallel", "MASS", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "escheR", "ggplot2", "spatialEco"]
},
"StabMap": {
"name": "StabMap",
"version": "1.4.0",
"sha256": "0pqk8i63w1x3ksjfygyf819gr93yb3jl5kpdvwz04r16n3n3sxaq",
"depends": ["BiocGenerics", "BiocNeighbors", "BiocParallel", "BiocSingular", "MASS", "Matrix", "MatrixGenerics", "SummarizedExperiment", "abind", "igraph", "slam"]
},
"Statial": {
"name": "Statial",
"version": "1.12.0",
"sha256": "10apydvjfj7jlg5ns55rfy4zsy99lzwzc7bxjn8h3aygs9nwnv60",
"depends": ["BiocParallel", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "cluster", "concaveman", "data_table", "dplyr", "edgeR", "ggplot2", "limma", "magrittr", "plotly", "purrr", "ranger", "spatstat_explore", "spatstat_geom", "stringr", "tibble", "tidyr", "tidyselect", "treekoR"]
},
"Streamer": {
"name": "Streamer",
"version": "1.56.0",
"sha256": "0sg7as0b12d0lwh2wavvb036v55dzf8y8xixa6q75hrs2zw0x47w",
"depends": ["BiocGenerics", "RBGL", "graph"]
},
"Structstrings": {
"name": "Structstrings",
"version": "1.26.0",
"sha256": "0lmymq8lgaiw8v8l1fln728yb4iky6ypslw7hn5lg48w9fjhgiqv",
"depends": ["BiocGenerics", "Biostrings", "IRanges", "S4Vectors", "XVector", "crayon", "stringi", "stringr"]
},
"StructuralVariantAnnotation": {
"name": "StructuralVariantAnnotation",
"version": "1.26.0",
"sha256": "0lqk2fwpz3nkz5ww4lcz6751hjkcmc2wgdxk07fb56qkzbpyg5f8",
"depends": ["BiocGenerics", "Biostrings", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment", "VariantAnnotation", "assertthat", "dplyr", "pwalign", "rlang", "rtracklayer", "stringr"]
},
"SubCellBarCode": {
"name": "SubCellBarCode",
"version": "1.26.0",
"sha256": "1c20fnjzqfsbj2ay6cm0401yv4v0a7s61cvzl1y95drh5r6g0y5h",
"depends": ["AnnotationDbi", "Rtsne", "caret", "e1071", "ggplot2", "ggrepel", "gridExtra", "networkD3", "org_Hs_eg_db", "scatterplot3d"]
},
"SummarizedExperiment": {
"name": "SummarizedExperiment",
"version": "1.40.0",
"sha256": "1xmlfrdhzlbsd23warfdm5iscm61r29jxridv8krv16b95l4axk9",
"depends": ["Biobase", "BiocGenerics", "DelayedArray", "GenomicRanges", "IRanges", "Matrix", "MatrixGenerics", "S4Arrays", "S4Vectors", "Seqinfo"]
},
"Summix": {
"name": "Summix",
"version": "2.16.0",
"sha256": "1sy7gi33zzd1wv5ql16r6qjmqlhxgkdkbbvjzkxdxpr0dq8k18l6",
"depends": ["BEDASSLE", "dplyr", "magrittr", "nloptr", "randomcoloR", "scales", "tibble", "tidyselect", "visNetwork"]
},
"SuperCellCyto": {
"name": "SuperCellCyto",
"version": "1.0.0",
"sha256": "0l4ajfp4gjfkpry31aiwsy1x8wwg87aq5zj52szhn982xfrzjya1",
"depends": ["BiocParallel", "Matrix", "SuperCell", "data_table"]
},
"SurfR": {
"name": "SurfR",
"version": "1.6.0",
"sha256": "19kzdq6h56wmc1fryb7zhsa14d9cyqlhf5pgk653jz69iy0z72m1",
"depends": ["BiocFileCache", "DESeq2", "SPsimSeq", "SummarizedExperiment", "TCGAbiolinks", "assertr", "biomaRt", "curl", "dplyr", "edgeR", "ggplot2", "ggrepel", "gridExtra", "httr", "knitr", "magrittr", "metaRNASeq", "openxlsx", "rhdf5", "rjson", "scales", "stringr", "tidyr", "venn"]
},
"SwathXtend": {
"name": "SwathXtend",
"version": "2.32.0",
"sha256": "1149rnh1h71afza6a0xjjgjgn10afdsc6vsqsvj7n6pb8lannzxy",
"depends": ["VennDiagram", "e1071", "lattice", "openxlsx"]
},
"SynExtend": {
"name": "SynExtend",
"version": "1.22.0",
"sha256": "14j98vhbm3hh2d995za5mkjrr37gwfvrigwyj1ybg9bvvqfkf6mq",
"depends": ["Biostrings", "DBI", "DECIPHER", "IRanges", "RSQLite", "S4Vectors"]
},
"SynMut": {
"name": "SynMut",
"version": "1.26.0",
"sha256": "0zi4zlnnayb026rfra2d5lw5l1slp70s6lblvwsj3gszivgcvc7b",
"depends": ["BiocGenerics", "Biostrings", "seqinr", "stringr"]
},
"TADCompare": {
"name": "TADCompare",
"version": "1.20.0",
"sha256": "0gwcc4rld9jm7wrq2dfg9fa1qvfb6v48ldcinfjzkjf2whj3kcn9",
"depends": ["HiCcompare", "Matrix", "PRIMME", "RColorBrewer", "cluster", "cowplot", "dplyr", "ggplot2", "ggpubr", "magrittr", "reshape2", "tidyr"]
},
"TAPseq": {
"name": "TAPseq",
"version": "1.22.0",
"sha256": "0djj1sz0ml831rgv974277i65lrghv1a2xc8jjjd0cs5xzci97ri",
"depends": ["BSgenome", "BiocGenerics", "BiocParallel", "Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "S4Vectors", "dplyr", "tidyr"]
},
"TBSignatureProfiler": {
"name": "TBSignatureProfiler",
"version": "1.22.0",
"sha256": "0ilp68m46qdh45rzksmbvnykvbwbpw75gww66n0glga4pkp551xk",
"depends": ["ASSIGN", "BiocParallel", "ComplexHeatmap", "DESeq2", "DT", "GSVA", "HGNChelper", "RColorBrewer", "ROCit", "S4Vectors", "SummarizedExperiment", "edgeR", "gdata", "ggplot2", "glmnet", "magrittr", "pROC", "reshape2", "singscore", "tibble"]
},
"TCC": {
"name": "TCC",
"version": "1.50.0",
"sha256": "14hbv28nrg81n905c5g0gmrl3qycwqn6mi2cbvc4cnhymzvcw20f",
"depends": ["DESeq2", "ROC", "edgeR"]
},
"TCGAbiolinks": {
"name": "TCGAbiolinks",
"version": "2.38.0",
"sha256": "1ysxy8jc06szqysw54j8hznc2vy0w3m1cr822cy6g4pfbdsqflp9",
"depends": ["GenomicRanges", "IRanges", "R_utils", "S4Vectors", "SummarizedExperiment", "TCGAbiolinksGUI_data", "XML", "biomaRt", "data_table", "downloader", "dplyr", "ggplot2", "httr", "jsonlite", "knitr", "plyr", "purrr", "readr", "rvest", "stringr", "tibble", "tidyr", "xml2"]
},
"TCGAutils": {
"name": "TCGAutils",
"version": "1.29.5",
"sha256": "051ylfrkbf0dx2m47hqbm4d0sw47nwmlhzwzalyx4j484jn4kra2",
"depends": ["AnnotationDbi", "BiocBaseUtils", "BiocGenerics", "GenomeInfoDb", "GenomicDataCommons", "GenomicFeatures", "GenomicRanges", "IRanges", "MultiAssayExperiment", "RaggedExperiment", "S4Vectors", "Seqinfo", "SummarizedExperiment", "rvest", "stringr", "xml2"]
},
"TCseq": {
"name": "TCseq",
"version": "1.34.0",
"sha256": "156k83g75i2ndi7gc0li2zngad4s9bqn4ygi9lj5mlnf2lhr0rlq",
"depends": ["BiocGenerics", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "SummarizedExperiment", "cluster", "e1071", "edgeR", "ggplot2", "locfit", "reshape2"]
},
"TDbasedUFE": {
"name": "TDbasedUFE",
"version": "1.10.0",
"sha256": "1d130jjazb21x93cw000z22hs9iic5l47sw7z38jv42pq7xv4xfa",
"depends": ["GenomicRanges", "MOFAdata", "rTensor", "readr", "shiny", "tximport", "tximportData"]
},
"TDbasedUFEadv": {
"name": "TDbasedUFEadv",
"version": "1.10.0",
"sha256": "0wqi3rdiyhl7sxccwqcmnyzl5yfd3c4f4nliksbmja7xm5frm4hq",
"depends": ["Biobase", "DOSE", "GenomicRanges", "RTCGA", "STRINGdb", "TDbasedUFE", "enrichR", "enrichplot", "hash", "rTensor", "shiny"]
},
"TEKRABber": {
"name": "TEKRABber",
"version": "1.14.0",
"sha256": "13cqkkqhcwx9gygkkqjgjb3iph8q38nwx637dadk69gbqbslkm0g",
"depends": ["DESeq2", "Rcpp", "SCBN", "Seqinfo", "apeglm", "biomaRt", "doParallel", "dplyr", "foreach", "magrittr", "rtracklayer"]
},
"TENET": {
"name": "TENET",
"version": "1.2.0",
"sha256": "1s5cb3lyy22p69x2vkd1igbn7limhkfchfk3dwg3fvkbxk299xdv",
"depends": ["AnnotationHub", "BAMMtools", "BSgenome_Hsapiens_UCSC_hg38", "Biostrings", "ExperimentHub", "GenomicRanges", "IRanges", "MotifDb", "MultiAssayExperiment", "RCircos", "R_utils", "S4Vectors", "SummarizedExperiment", "TCGAbiolinks", "TENET_ExperimentHub", "ggplot2", "matlab", "pastecs", "rtracklayer", "seqLogo", "sesame", "sesameData", "survival", "survminer"]
},
"TENxIO": {
"name": "TENxIO",
"version": "1.12.0",
"sha256": "1vwp8cqvlz0d4bid7wwv3xrn2mg4920sraz41m55b1riawqdnxdp",
"depends": ["BiocBaseUtils", "BiocGenerics", "BiocIO", "GenomicRanges", "HDF5Array", "Matrix", "MatrixGenerics", "RCurl", "R_utils", "S4Vectors", "Seqinfo", "SingleCellExperiment", "SummarizedExperiment", "readr", "rhdf5"]
},
"TEQC": {
"name": "TEQC",
"version": "4.32.0",
"sha256": "1kh9h2lw0lg9qafxqv78wm5j5jc138zqr9raizpa7czvwg7ppc7b",
"depends": ["Biobase", "BiocGenerics", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "hwriter"]
},
"TFARM": {
"name": "TFARM",
"version": "1.32.0",
"sha256": "16izz3krw786k3ryf1zs6lhi9kdx0w1cwfcawcp0rzwwwhn8x7nm",
"depends": ["GenomicRanges", "arules", "fields", "gplots", "stringr"]
},
"TFBSTools": {
"name": "TFBSTools",
"version": "1.48.0",
"sha256": "0vsl5i3nv57ha47qa5ba3sd99n9sd6px402wqr80fv9636qb85nq",
"depends": ["BSgenome", "Biobase", "BiocGenerics", "BiocParallel", "Biostrings", "DBI", "DirichletMultinomial", "GenomicRanges", "IRanges", "RSQLite", "S4Vectors", "Seqinfo", "TFMPvalue", "XML", "XVector", "caTools", "gtools", "pwalign", "rtracklayer", "seqLogo"]
},
"TFEA_ChIP": {
"name": "TFEA.ChIP",
"version": "1.30.0",
"sha256": "0cyd9qghhvan8gb8dgdcsglmi2c73axd50sd3g9bjzj7rxwpks36",
"depends": ["ExperimentHub", "GenomicFeatures", "GenomicRanges", "IRanges", "R_utils", "biomaRt", "dplyr", "org_Hs_eg_db", "org_Mm_eg_db", "rlang"]
},
"TFHAZ": {
"name": "TFHAZ",
"version": "1.32.0",
"sha256": "0fp26qlcq6yasj4m7zc05lvj2x45waj0w0862976m756z55ximzb",
"depends": ["GenomicRanges", "IRanges", "ORFik", "S4Vectors"]
},
"TFutils": {
"name": "TFutils",
"version": "1.30.0",
"sha256": "14ks561m1n3jq96x51x3127nr5gjndvkcjvk1xrp2ccifdniwl29",
"depends": ["AnnotationDbi", "BiocFileCache", "DT", "GSEABase", "GenomicFiles", "Rsamtools", "SummarizedExperiment", "dplyr", "httr", "magrittr", "miniUI", "org_Hs_eg_db", "readxl", "rjson", "shiny"]
},
"TIN": {
"name": "TIN",
"version": "1.42.0",
"sha256": "1zzglfmipsabf3zbphv0dcjgzb2lwyksg728nvc8k2s2q2y6cbyk",
"depends": ["WGCNA", "aroma_affymetrix", "data_table", "impute", "squash", "stringr"]
},
"TMSig": {
"name": "TMSig",
"version": "1.4.0",
"sha256": "01hzm0b7qyyr666yhk6lb2yv130pjs0ar5ss7jphqshr16h6m0mc",
"depends": ["ComplexHeatmap", "GSEABase", "Matrix", "circlize", "data_table", "limma"]
},
"TMixClust": {
"name": "TMixClust",
"version": "1.32.0",
"sha256": "0ards0ri8g82ianzdidm6bdh64j4jljag8lw9dyilh9d5kqabciz",
"depends": ["Biobase", "BiocParallel", "SPEM", "cluster", "flexclust", "gss", "mvtnorm", "zoo"]
},
"TOAST": {
"name": "TOAST",
"version": "1.24.0",
"sha256": "1cmi1avi7ypy20r0vqyid72zfsas8ch4b2li6s9h9acbi98flzz9",
"depends": ["EpiDISH", "GGally", "SummarizedExperiment", "corpcor", "doParallel", "ggplot2", "limma", "nnls", "quadprog", "tidyr"]
},
"TOP": {
"name": "TOP",
"version": "1.10.0",
"sha256": "152yyajddx7sxigky8s4pymsfrmabiiib4rfvpm3n8pb0mp5if2x",
"depends": ["ClassifyR", "Hmisc", "assertthat", "caret", "directPA", "doParallel", "dplyr", "ggnewscale", "ggplot2", "ggraph", "ggrepel", "ggthemes", "glmnet", "igraph", "latex2exp", "limma", "magrittr", "pROC", "plotly", "purrr", "reshape2", "statmod", "stringr", "survival", "tibble", "tidygraph", "tidyr"]
},
"TPP": {
"name": "TPP",
"version": "3.38.0",
"sha256": "043y7vjr2g62vqky6k7zr262vza5lswrapx0hx2jq9sh4xibizh9",
"depends": ["Biobase", "MASS", "RColorBrewer", "RCurl", "VGAM", "VennDiagram", "biobroom", "broom", "data_table", "doParallel", "dplyr", "foreach", "futile_logger", "ggplot2", "gridExtra", "knitr", "limma", "magrittr", "mefa", "nls2", "openxlsx", "plyr", "purrr", "reshape2", "rmarkdown", "stringr", "tibble", "tidyr"]
},
"TPP2D": {
"name": "TPP2D",
"version": "1.26.0",
"sha256": "117avbbvnvnji5nlk8figs4j2ih9ylfy0k1ryvqv4b9gjg6hqhbn",
"depends": ["BiocParallel", "MASS", "RCurl", "doParallel", "dplyr", "foreach", "ggplot2", "limma", "openxlsx", "stringr", "tidyr"]
},
"TREG": {
"name": "TREG",
"version": "1.14.0",
"sha256": "1c460crq072651h5156qb1wqraljnwhwm8bjy7d4gv8i57dbl6vx",
"depends": ["Matrix", "SummarizedExperiment", "purrr", "rafalib"]
},
"TRESS": {
"name": "TRESS",
"version": "1.16.0",
"sha256": "0xn1lgjb44vxfcwimq06dvj997ianr60nydfawl3pjjxpa7yfmi9",
"depends": ["AnnotationDbi", "GenomicFeatures", "GenomicRanges", "IRanges", "Matrix", "Rsamtools", "S4Vectors", "matrixStats", "rtracklayer"]
},
"TRONCO": {
"name": "TRONCO",
"version": "2.42.0",
"sha256": "0fwvyazzbfjjdivpgml5jjb9r0k07kapkrl4jif1m4mfz24icc9i",
"depends": ["RColorBrewer", "R_matlab", "Rgraphviz", "bnlearn", "circlize", "doParallel", "foreach", "gridExtra", "gtable", "gtools", "igraph", "iterators", "scales", "xtable"]
},
"TSAR": {
"name": "TSAR",
"version": "1.8.0",
"sha256": "1bbrqx70hzjxcfr0pgvqxc6yas51qkqzarmncgpqc7b0cpwiv50i",
"depends": ["dplyr", "ggplot2", "ggpubr", "jsonlite", "magrittr", "mgcv", "minpack_lm", "openxlsx", "plotly", "readxl", "rhandsontable", "shiny", "shinyWidgets", "shinyjs", "stringr", "tidyr"]
},
"TSCAN": {
"name": "TSCAN",
"version": "1.48.0",
"sha256": "14r33cyiy80pksbiwx7hnmxlhimvxhzw2vnvilx4hk90qypda9xk",
"depends": ["DelayedArray", "Matrix", "S4Vectors", "SingleCellExperiment", "SparseArray", "SummarizedExperiment", "TrajectoryUtils", "combinat", "fastICA", "ggplot2", "gplots", "igraph", "mclust", "mgcv", "plyr", "shiny"]
},
"TTMap": {
"name": "TTMap",
"version": "1.32.0",
"sha256": "0pz3h6ybckmfk6y7ajr1sk6yhybqxyhpmh65glfrvhf4rc1cpysc",
"depends": ["Biobase", "SummarizedExperiment", "colorRamps", "rgl"]
},
"TVTB": {
"name": "TVTB",
"version": "1.36.0",
"sha256": "0v4mrcrdlncbi52mxl3pxa8w4p1v4ws6zmfin56c9kcsfrngwp6s",
"depends": ["AnnotationFilter", "BiocGenerics", "BiocParallel", "Biostrings", "GGally", "GenomicRanges", "Gviz", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "VariantAnnotation", "ensembldb", "ggplot2", "limma", "reshape2"]
},
"TargetDecoy": {
"name": "TargetDecoy",
"version": "1.16.0",
"sha256": "0dcwnffgp6kmw62jfcnbw3shbb6gmsm4982yrmgrbwc0wddb6jgi",
"depends": ["ggplot2", "ggpubr", "miniUI", "mzID", "mzR", "shiny"]
},
"TargetScore": {
"name": "TargetScore",
"version": "1.48.0",
"sha256": "0yrq8gmd62apl06m4ag3jdy0km8k0np2ijhda16xfk0y4kf4pdim",
"depends": ["Matrix", "pracma"]
},
"TargetSearch": {
"name": "TargetSearch",
"version": "2.12.0",
"sha256": "0cshl6mdqwkndzh2295rf5msg4niysfy2d82xg5c3842vbjlp40r",
"depends": ["assertthat", "ncdf4"]
},
"TaxSEA": {
"name": "TaxSEA",
"version": "1.2.0",
"sha256": "18dfz7pijpral6mzhx3vjm1gyf0d653jq9iypbs6z7p8g342wyyw",
"depends": []
},
"TileDBArray": {
"name": "TileDBArray",
"version": "1.20.0",
"sha256": "0czy2xn55zld91zqpj16cd3nnys1v0bh61kw408njslxgwslsnrz",
"depends": ["DelayedArray", "S4Vectors", "SparseArray", "tiledb"]
},
"TissueEnrich": {
"name": "TissueEnrich",
"version": "1.30.0",
"sha256": "0ysk3wx7c73ljgz78ywkriirxlbpnwg1n3rv24qi24rh9n9j2n5f",
"depends": ["GSEABase", "SummarizedExperiment", "dplyr", "ggplot2", "tidyr"]
},
"TnT": {
"name": "TnT",
"version": "1.32.0",
"sha256": "0f3q1g6zqcpxl5f1icj8frdlpmxwnf2lgrab7z1n6bssdvvjv5r2",
"depends": ["Biobase", "GenomeInfoDb", "GenomicRanges", "IRanges", "S4Vectors", "data_table", "htmlwidgets", "jsonlite", "knitr"]
},
"ToxicoGx": {
"name": "ToxicoGx",
"version": "2.14.0",
"sha256": "01y338mxf3sx3rkmzd5dnlk04x3nwbk15vnigjyhaq2h18gc5qqy",
"depends": ["Biobase", "BiocGenerics", "BiocParallel", "CoreGx", "S4Vectors", "SummarizedExperiment", "assertthat", "caTools", "data_table", "downloader", "dplyr", "ggplot2", "jsonlite", "limma", "magrittr", "reshape2", "scales", "tibble", "tidyr"]
},
"TrIdent": {
"name": "TrIdent",
"version": "1.2.0",
"sha256": "0ap55nnljg1q4d4vg1rz9k9d0fy5dx71ha26haw98kbb04jxbbps",
"depends": ["dplyr", "ggplot2", "patchwork", "roll", "stringr", "tidyr"]
},
"TrajectoryGeometry": {
"name": "TrajectoryGeometry",
"version": "1.18.0",
"sha256": "12s9lq46admw4akfxpcgxkq6l46z02k00lx6q7h386p4lbr9f32k",
"depends": ["ggplot2", "pracma", "rgl"]
},
"TrajectoryUtils": {
"name": "TrajectoryUtils",
"version": "1.18.0",
"sha256": "0y2d2pxsiagzzqplbwz6qmkcd3rqq77j6zsj8i987dwk13p5gy4f",
"depends": ["Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "igraph"]
},
"TreeAndLeaf": {
"name": "TreeAndLeaf",
"version": "1.22.0",
"sha256": "0ql61a8a3wl1fp9wkliqk7794jhvgx062i1awy1k3aipwl9lwyay",
"depends": ["RedeR", "ape", "igraph"]
},
"TreeSummarizedExperiment": {
"name": "TreeSummarizedExperiment",
"version": "2.18.0",
"sha256": "15kqkj3hz24mbiz9bs63frfl983f4vv1byki32g4fljhwd6xv0m9",
"depends": ["BiocGenerics", "BiocParallel", "Biostrings", "IRanges", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "ape", "dplyr", "rlang", "treeio"]
},
"Trendy": {
"name": "Trendy",
"version": "1.32.0",
"sha256": "0cyxb4xdfr52vynwjwysrnxd8xn386iy72yzg81d20v27yykd4yv",
"depends": ["BiocParallel", "DT", "S4Vectors", "SummarizedExperiment", "gplots", "magrittr", "segmented", "shiny", "shinyFiles"]
},
"TurboNorm": {
"name": "TurboNorm",
"version": "1.58.0",
"sha256": "068g9q3111bshis8f0f236jhbpyy5nm1h203ibfllkq1pvw4l6cr",
"depends": ["affy", "convert", "lattice", "limma", "marray"]
},
"UCSC_utils": {
"name": "UCSC.utils",
"version": "1.6.0",
"sha256": "0ylb4d3bsl859609b4wsclhhv2zrvhkcr25q5mv6ywyvppri3j1y",
"depends": ["S4Vectors", "httr", "jsonlite"]
},
"UCell": {
"name": "UCell",
"version": "2.14.0",
"sha256": "06bznwjswqv7fz5m2pjhzzj70c14a6v44sdgwwg436g21znjxpyr",
"depends": ["BiocNeighbors", "BiocParallel", "Matrix", "SingleCellExperiment", "SummarizedExperiment", "data_table"]
},
"UMI4Cats": {
"name": "UMI4Cats",
"version": "1.20.0",
"sha256": "162f89h9jid1bqsym1mqaw7xfnax57na18ng5f815wf2r2x03a3i",
"depends": ["BSgenome", "BiocFileCache", "BiocGenerics", "Biostrings", "DESeq2", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "RColorBrewer", "R_utils", "Rbowtie2", "Rsamtools", "S4Vectors", "ShortRead", "SummarizedExperiment", "annotate", "cowplot", "dplyr", "fda", "ggplot2", "magick", "rappdirs", "regioneR", "reshape2", "rlang", "scales", "stringr", "zoo"]
},
"UNDO": {
"name": "UNDO",
"version": "1.52.0",
"sha256": "1rkrfcl8l4p5pi3qqn0lzyr4l6a75qnp0sdj4hrz5rz72fsqn02y",
"depends": ["Biobase", "BiocGenerics", "MASS", "boot", "nnls"]
},
"UPDhmm": {
"name": "UPDhmm",
"version": "1.6.0",
"sha256": "1rn1jijmpx7j165q210l76hyq3aj7ir02zh64cn85a04razs2qrx",
"depends": ["Biobase", "BiocParallel", "GenomeInfoDb", "GenomicRanges", "HMM", "IRanges", "S4Vectors", "SummarizedExperiment", "VariantAnnotation"]
},
"Ularcirc": {
"name": "Ularcirc",
"version": "1.28.0",
"sha256": "1k8x7g5fgssj01i8b60fyhsh09hmxj06k0ghxrk70jijp8y49906",
"depends": ["AnnotationDbi", "AnnotationHub", "BSgenome", "BiocGenerics", "Biostrings", "DT", "GenomeInfoDb", "GenomeInfoDbData", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "Organism_dplyr", "R_utils", "S4Vectors", "data_table", "ggplot2", "ggrepel", "gsubfn", "moments", "plotgardener", "shiny", "shinyFiles", "shinydashboard", "shinyjs", "yaml"]
},
"UniProt_ws": {
"name": "UniProt.ws",
"version": "2.50.0",
"sha256": "0jbn2ijcrpq942afn5gq5f4lqqzgbx4c2r7z0cn9kk69h7q695zv",
"depends": ["AnnotationDbi", "BiocBaseUtils", "BiocFileCache", "BiocGenerics", "httr2", "jsonlite", "progress", "rjsoncons", "rlang"]
},
"Uniquorn": {
"name": "Uniquorn",
"version": "2.30.0",
"sha256": "1l068kjphna85z98xwqh4i4qxrvprl4wc8rp9lcgh692vhbsxjgb",
"depends": ["GenomicRanges", "IRanges", "R_utils", "VariantAnnotation", "WriteXLS", "data_table", "doParallel", "foreach", "stringr"]
},
"VAExprs": {
"name": "VAExprs",
"version": "1.16.0",
"sha256": "0ypi6hhqlkv80fgpg36jfsm365ibljsj4h3nn6yqazigaisi7y4c",
"depends": ["CatEncoders", "DeepPINCS", "DiagrammeR", "SingleCellExperiment", "SummarizedExperiment", "keras", "mclust", "purrr", "scater", "tensorflow"]
},
"VCFArray": {
"name": "VCFArray",
"version": "1.26.0",
"sha256": "1j0ckv4d7a6nzxc53sih30kdb3l4bbk6db53zkv0hz4bpdzq6mrw",
"depends": ["BiocGenerics", "DelayedArray", "GenomicFiles", "GenomicRanges", "Rsamtools", "S4Vectors", "VariantAnnotation"]
},
"VDJdive": {
"name": "VDJdive",
"version": "1.12.0",
"sha256": "03vz55d7lpclrw059hp914ak5jrhbmc20kp1siylz2m2izbz7vyy",
"depends": ["BiocParallel", "IRanges", "Matrix", "RColorBrewer", "Rcpp", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "cowplot", "ggplot2", "gridExtra"]
},
"VERSO": {
"name": "VERSO",
"version": "1.20.0",
"sha256": "0cg61j5cwp1i9xaj5hknwavjfzq14f1sqkw6zqbghb6bhl99xccx",
"depends": ["Rfast", "ape", "data_tree"]
},
"VaSP": {
"name": "VaSP",
"version": "1.22.0",
"sha256": "0nmjic140biq4rfi7gq2kwh4vk7bicqwmkc4ww93c1lwl674znd0",
"depends": ["GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "ballgown", "cluster", "matrixStats"]
},
"VanillaICE": {
"name": "VanillaICE",
"version": "1.72.0",
"sha256": "0n7ir8r23pf9mazgrmyqyr8d1h1n7pm7p995p1ip0rq4cvbdmz96",
"depends": ["BSgenome_Hsapiens_UCSC_hg18", "Biobase", "BiocGenerics", "GenomeInfoDb", "GenomicRanges", "IRanges", "MatrixGenerics", "S4Vectors", "SummarizedExperiment", "crlmm", "data_table", "foreach", "lattice", "matrixStats", "oligoClasses"]
},
"VarCon": {
"name": "VarCon",
"version": "1.18.0",
"sha256": "0fancb3r8r8kdzg0668fdjjx08q9zr0hp94ssyiyi20jsvwia0cq",
"depends": ["BSgenome", "Biostrings", "GenomicRanges", "IRanges", "ggplot2", "shiny", "shinyFiles", "shinycssloaders"]
},
"VariantAnnotation": {
"name": "VariantAnnotation",
"version": "1.56.0",
"sha256": "008saw81bnzdyglysqcbmp745k8pxgx3ng7hkpqdry773vf3xfn8",
"depends": ["AnnotationDbi", "BSgenome", "Biobase", "BiocGenerics", "Biostrings", "DBI", "GenomicFeatures", "GenomicRanges", "IRanges", "MatrixGenerics", "Rhtslib", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "XVector", "curl", "rtracklayer"]
},
"VariantExperiment": {
"name": "VariantExperiment",
"version": "1.24.0",
"sha256": "12y7jafybsr74mjgfph87kxhj990bf9v795n3yj1mx4m2wiw211l",
"depends": ["Biostrings", "DelayedArray", "DelayedDataFrame", "GDSArray", "GenomicRanges", "IRanges", "S4Vectors", "SNPRelate", "SeqArray", "SummarizedExperiment", "gdsfmt"]
},
"VariantFiltering": {
"name": "VariantFiltering",
"version": "1.46.0",
"sha256": "070n6iq21pzq2d146d5sh9yjbmpyw617bskyfbfkpz0dh2fhxbgz",
"depends": ["AnnotationDbi", "BSgenome", "Biobase", "BiocGenerics", "BiocParallel", "Biostrings", "DT", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "GenomicScores", "Gviz", "IRanges", "RBGL", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "VariantAnnotation", "XVector", "graph", "shiny", "shinyTree", "shinyjs", "shinythemes"]
},
"VariantTools": {
"name": "VariantTools",
"version": "1.51.0",
"sha256": "14r5hnc095v1h2q2bfsgqfmmmfzdnl5srac3xla1qjq9d8xv5m7v",
"depends": ["BSgenome", "Biobase", "BiocGenerics", "BiocParallel", "Biostrings", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "Matrix", "Rsamtools", "S4Vectors", "VariantAnnotation", "rtracklayer"]
},
"VegaMC": {
"name": "VegaMC",
"version": "3.48.0",
"sha256": "0b90r3960ghkqp12spj6hkm113r8bbpkl0j68w0mg2070dihdbh4",
"depends": ["Biobase", "biomaRt"]
},
"VennDetail": {
"name": "VennDetail",
"version": "1.26.0",
"sha256": "00c07hvqk5nmmklkaxqig5zn9j0g2fp1xbisfrjmzckcyjcdmmly",
"depends": ["DT", "dplyr", "ggplot2", "htmlwidgets", "magrittr", "patchwork", "plotly", "purrr", "rlang", "shiny", "tibble", "tidyr"]
},
"ViSEAGO": {
"name": "ViSEAGO",
"version": "1.24.0",
"sha256": "1mf5nmyp3n4xl555v0h8iypc3640pnc730v39n8wzmnjcq1rm9yz",
"depends": ["AnnotationDbi", "AnnotationForge", "ComplexHeatmap", "DT", "DiagrammeR", "GOSemSim", "GO_db", "RColorBrewer", "R_utils", "UpSetR", "biomaRt", "circlize", "data_table", "dendextend", "dynamicTreeCut", "fgsea", "ggplot2", "heatmaply", "htmlwidgets", "igraph", "plotly", "scales", "topGO"]
},
"VisiumIO": {
"name": "VisiumIO",
"version": "1.6.0",
"sha256": "1fax22m1nvscsdq4jli6ayp3f971ymfp20kf69vka1ap1amswhli",
"depends": ["BiocBaseUtils", "BiocGenerics", "BiocIO", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "TENxIO", "jsonlite"]
},
"Voyager": {
"name": "Voyager",
"version": "1.12.0",
"sha256": "1iizz27aa18banbrnv45d1pd9avwal6hwwnv4g1sqjbgz6a69sg5",
"depends": ["BiocParallel", "DelayedArray", "Matrix", "MatrixGenerics", "RSpectra", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SpatialFeatureExperiment", "SummarizedExperiment", "bluster", "ggnewscale", "ggplot2", "lifecycle", "memuse", "patchwork", "rlang", "scales", "scico", "sf", "spdep", "terra", "zeallot"]
},
"VplotR": {
"name": "VplotR",
"version": "1.20.0",
"sha256": "1ljkd5yzi6yxcy0xcaqhv152vz9qfyg36ks9h24w93gynfjjl6rc",
"depends": ["GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "RColorBrewer", "Rsamtools", "S4Vectors", "Seqinfo", "cowplot", "ggplot2", "magrittr", "reshape2", "zoo"]
},
"Wrench": {
"name": "Wrench",
"version": "1.28.0",
"sha256": "1llv40v5hcszxxzgg1vlxgg6k8qd0g5wln4cnfj13wzayskgx9na",
"depends": ["limma", "locfit", "matrixStats"]
},
"XAItest": {
"name": "XAItest",
"version": "1.2.0",
"sha256": "0yxnlxrvlz6flds58af5wg3s77jbdgcjg6bdmwl7sb6pz8pbijfg",
"depends": ["DT", "SummarizedExperiment", "caret", "ggplot2", "kernelshap", "lime", "limma", "randomForest"]
},
"XDE": {
"name": "XDE",
"version": "2.56.0",
"sha256": "144ab9pav8bm3fwk8ywlsra1c0n7i33f2461a0zj54ygv1b9hf5m",
"depends": ["Biobase", "BiocGenerics", "GeneMeta", "RColorBrewer", "genefilter", "gtools", "mvtnorm", "siggenes"]
},
"XINA": {
"name": "XINA",
"version": "1.28.0",
"sha256": "1kr6hybs8p86x7l5wxa35kvwq7rmsjl60blfs9xi9c8sqrrgh6dh",
"depends": ["STRINGdb", "alluvial", "ggplot2", "gridExtra", "igraph", "mclust", "plyr"]
},
"XVector": {
"name": "XVector",
"version": "0.50.0",
"sha256": "1473icy90p04ai0swk0ja681x3x00a740n0i81y3ih65si5x0qy9",
"depends": ["BiocGenerics", "IRanges", "S4Vectors"]
},
"XeniumIO": {
"name": "XeniumIO",
"version": "1.2.0",
"sha256": "1m5dy80g2jwws8w9y1zk3x4mlxk2zcplyy6lm27k09na83a5iq9j",
"depends": ["BiocBaseUtils", "BiocGenerics", "BiocIO", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "TENxIO", "VisiumIO", "jsonlite"]
},
"Xeva": {
"name": "Xeva",
"version": "1.26.0",
"sha256": "14icm4q5kk95af721c27kgcza30ws28sinj5l76v2z60if9052k0",
"depends": ["BBmisc", "Biobase", "ComplexHeatmap", "PharmacoGx", "Rmisc", "doParallel", "downloader", "ggplot2", "nlme", "scales"]
},
"YAPSA": {
"name": "YAPSA",
"version": "1.36.0",
"sha256": "0i6s8vhk8ar62g9fzn5zr76w94i11qy7g7gfbbk3kmvg3g4rrj4c",
"depends": ["BSgenome_Hsapiens_UCSC_hg19", "Biostrings", "ComplexHeatmap", "GenomicRanges", "GetoptLong", "KEGGREST", "PMCMRplus", "Seqinfo", "SomaticSignatures", "VariantAnnotation", "circlize", "corrplot", "dendextend", "doParallel", "dplyr", "ggbeeswarm", "ggplot2", "gridExtra", "gtrellis", "limSolve", "magrittr", "pracma", "reshape2"]
},
"ZygosityPredictor": {
"name": "ZygosityPredictor",
"version": "1.10.0",
"sha256": "00nckxl38ajbzxlm011x3zx2q3ka844q6f4fxhyvd8587dl1qlxd",
"depends": ["DelayedArray", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "VariantAnnotation", "dplyr", "igraph", "knitr", "magrittr", "purrr", "readr", "rlang", "stringr", "tibble"]
},
"a4": {
"name": "a4",
"version": "1.58.0",
"sha256": "0smiq7apng2jlqn0l38q2h69a42zl7mqnyx94fy2m7mmdhhkdq0d",
"depends": ["a4Base", "a4Classif", "a4Core", "a4Preproc", "a4Reporting"]
},
"a4Base": {
"name": "a4Base",
"version": "1.58.0",
"sha256": "1xmgg601w9lscc25ryny42qrvvsj511whxgg1fzfqzzmlrmrx267",
"depends": ["Biobase", "a4Core", "a4Preproc", "annaffy", "genefilter", "glmnet", "gplots", "limma", "mpm", "multtest"]
},
"a4Classif": {
"name": "a4Classif",
"version": "1.58.0",
"sha256": "1kfj5pk7canxb4i70sk808ibinfy96418s9ni7r31gi3h1240516",
"depends": ["Biobase", "ROCR", "a4Core", "a4Preproc", "glmnet", "pamr", "varSelRF"]
},
"a4Core": {
"name": "a4Core",
"version": "1.58.0",
"sha256": "10lg59fqsa4vv0sv1nrsaxmirwh6likr14b5cai5p45gya3fgbz4",
"depends": ["Biobase", "glmnet"]
},
"a4Preproc": {
"name": "a4Preproc",
"version": "1.58.0",
"sha256": "0fl9vlndbj8skhn0kl1zpy10g5fjzi36h5pyf8706c6gbfxhkifg",
"depends": ["Biobase", "BiocGenerics"]
},
"a4Reporting": {
"name": "a4Reporting",
"version": "1.58.0",
"sha256": "1q5s52swbkvzz3qghr03m7m17s7qvc8aaymxxaingkwavgsln77c",
"depends": ["xtable"]
},
"aCGH": {
"name": "aCGH",
"version": "1.88.0",
"sha256": "1hqx009xq4j55qdxy3gwgsji0rnj069yj20xfb390ciwa2b1hixk",
"depends": ["Biobase", "cluster", "multtest", "survival"]
},
"abseqR": {
"name": "abseqR",
"version": "1.28.0",
"sha256": "0cgphb2dgh6kdrr8v5zzrdrigvqribwasjhpdnfyldaxvn97b93n",
"depends": ["BiocParallel", "BiocStyle", "RColorBrewer", "VennDiagram", "circlize", "flexdashboard", "ggcorrplot", "ggdendro", "ggplot2", "gridExtra", "knitr", "plotly", "plyr", "png", "reshape2", "rmarkdown", "stringr", "vegan"]
},
"acde": {
"name": "acde",
"version": "1.40.0",
"sha256": "12h52jsc7ql3hj47f1akqpcq5sh3yjrgp5zyz6d4bbsgddy30d4d",
"depends": ["boot"]
},
"adSplit": {
"name": "adSplit",
"version": "1.80.0",
"sha256": "0iqyr96s8hclxvcb3ms2gsrwl2kh84ccdcg26ssvr0w15kh7gwg9",
"depends": ["AnnotationDbi", "Biobase", "GO_db", "KEGGREST", "cluster", "multtest"]
},
"adductomicsR": {
"name": "adductomicsR",
"version": "1.26.0",
"sha256": "0bnhbv344qxfx96z6bjmqn5r8k12i674ip7bw364y3b63swcf7ll",
"depends": ["AnnotationHub", "DT", "ExperimentHub", "OrgMassSpecR", "RcppEigen", "adductData", "ade4", "bootstrap", "data_table", "doSNOW", "dplyr", "fastcluster", "foreach", "fpc", "mzR", "pastecs", "pracma", "reshape2", "rvest", "smoother", "zoo"]
},
"adverSCarial": {
"name": "adverSCarial",
"version": "1.8.0",
"sha256": "0fpgsfmmr4skkry0r95492pm1wlvw7y8q82snzahbc3nbws0y27x",
"depends": ["DelayedArray", "S4Vectors", "gtools"]
},
"affxparser": {
"name": "affxparser",
"version": "1.82.0",
"sha256": "019fq9l77s57k163b7myz50i0zs98gcqvzh1rjg4w6mqivnsp89w",
"depends": []
},
"affy": {
"name": "affy",
"version": "1.88.0",
"sha256": "0jrm1x6wygss4qg338599018izxygvzs0ddlni53pdi7j1f7aw4y",
"depends": ["Biobase", "BiocGenerics", "BiocManager", "affyio", "preprocessCore"]
},
"affyContam": {
"name": "affyContam",
"version": "1.68.0",
"sha256": "1b6akkpaij3jisckh73q3k19x607afdn2ppvp2h7wn9h8h9pljwj",
"depends": ["Biobase", "affy", "affydata"]
},
"affyILM": {
"name": "affyILM",
"version": "1.62.0",
"sha256": "1z0ppsd26frcshxbqwwrf5k79zhicc7cg8qfcyhqj3k696dviaxm",
"depends": ["Biobase", "affxparser", "affy", "gcrma"]
},
"affyPLM": {
"name": "affyPLM",
"version": "1.86.0",
"sha256": "07hbw8q2cqh8ar7y5q6kazl46lqw0k0gg0ckmigcs4551bbsxgp6",
"depends": ["Biobase", "BiocGenerics", "affy", "gcrma", "preprocessCore"]
},
"affycomp": {
"name": "affycomp",
"version": "1.86.0",
"sha256": "03h013gr7l5g7fgbs58bhqb4xblr3bfqkwqir655ck4xls1ywrb9",
"depends": ["Biobase"]
},
"affycoretools": {
"name": "affycoretools",
"version": "1.82.0",
"sha256": "04vbbj8rvpxk3xpgisix6qd92383zyanxx06300ws2agh5wqwx10",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "DBI", "GOstats", "Glimma", "RSQLite", "ReportingTools", "S4Vectors", "affy", "edgeR", "gcrma", "ggplot2", "gplots", "hwriter", "lattice", "limma", "oligoClasses", "xtable"]
},
"affyio": {
"name": "affyio",
"version": "1.80.0",
"sha256": "1qnxxixskak3259rs1smpc7w51ycilb510rlqas4wq53ckwbmhql",
"depends": []
},
"affylmGUI": {
"name": "affylmGUI",
"version": "1.84.0",
"sha256": "0rpfx60qsx0ia0xx1r0bhv44sh376z10dsgk903y80pfazrd3jn9",
"depends": ["AnnotationDbi", "BiocGenerics", "BiocManager", "R2HTML", "affy", "affyPLM", "affyio", "gcrma", "limma", "tkrplot", "xtable"]
},
"aggregateBioVar": {
"name": "aggregateBioVar",
"version": "1.20.0",
"sha256": "0wk6y4crv1xwapccpk5cd0klr93v94q8w0x9r0m0cpqc38a052s7",
"depends": ["Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "rlang", "tibble"]
},
"agilp": {
"name": "agilp",
"version": "3.42.0",
"sha256": "1hw15kv5f543wjzwc0ky41l2vnjax2p8pjszx3x5iwzlvjb5xsca",
"depends": []
},
"airpart": {
"name": "airpart",
"version": "1.18.0",
"sha256": "0bgz8pnjy9vxzbl6f7cn81mcs5wwqwjzdnlfciskzmk0wnn7k8sg",
"depends": ["ComplexHeatmap", "RColorBrewer", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "apeglm", "clue", "dplyr", "dynamicTreeCut", "emdbook", "forestplot", "ggplot2", "lpSolve", "matrixStats", "mclust", "pbapply", "plyr", "rlang", "scater", "smurf"]
},
"alabaster": {
"name": "alabaster",
"version": "1.10.0",
"sha256": "1vn835gjadgjh3fw3h2qw9i7fdyaxgsyba3l6kfgqa9vq6l81x28",
"depends": ["alabaster_base", "alabaster_bumpy", "alabaster_mae", "alabaster_matrix", "alabaster_ranges", "alabaster_sce", "alabaster_se", "alabaster_spatial", "alabaster_string", "alabaster_vcf"]
},
"alabaster_base": {
"name": "alabaster.base",
"version": "1.10.0",
"sha256": "03bjpa6r8cin45gmxsdf232c15fj2r5i5kg33h748qxzip376vmj",
"depends": ["Rcpp", "Rhdf5lib", "S4Vectors", "alabaster_schemas", "assorthead", "jsonlite", "jsonvalidate", "rhdf5"]
},
"alabaster_bumpy": {
"name": "alabaster.bumpy",
"version": "1.10.0",
"sha256": "1yrall9sh84gv550rd0w9qyvr6w06dw5zhdq5a9qrjkc81vzmn4p",
"depends": ["BiocGenerics", "BumpyMatrix", "IRanges", "Matrix", "S4Vectors", "alabaster_base", "rhdf5"]
},
"alabaster_files": {
"name": "alabaster.files",
"version": "1.8.0",
"sha256": "0648rlmllm46ffh807wq670p2v3pfs3y2pwmh0dpb8svqx02pmc5",
"depends": ["BiocGenerics", "Rsamtools", "S4Vectors", "alabaster_base"]
},
"alabaster_mae": {
"name": "alabaster.mae",
"version": "1.10.0",
"sha256": "1fqq06gx8zxx4ika3yh880xy5y40d71yai7468azlhg24chj6342",
"depends": ["MultiAssayExperiment", "S4Vectors", "alabaster_base", "alabaster_se", "jsonlite", "rhdf5"]
},
"alabaster_matrix": {
"name": "alabaster.matrix",
"version": "1.10.0",
"sha256": "117ai8v7snbs2kgw9fihp8rzqxgaq19l1jscdickq2k5ci985hdd",
"depends": ["BiocGenerics", "DelayedArray", "HDF5Array", "Matrix", "Rcpp", "S4Arrays", "S4Vectors", "SparseArray", "alabaster_base", "rhdf5"]
},
"alabaster_ranges": {
"name": "alabaster.ranges",
"version": "1.10.0",
"sha256": "0vlsrp3s21fq6g3w2ryp9kcclnh7m174l3a7rxk22yanfy65jmgm",
"depends": ["BiocGenerics", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "alabaster_base", "rhdf5"]
},
"alabaster_sce": {
"name": "alabaster.sce",
"version": "1.10.0",
"sha256": "0lgymw7g2ph24f6j95zqjmh5zwn5z8lfn17bdn0wj83hrrrkcwlb",
"depends": ["SingleCellExperiment", "alabaster_base", "alabaster_se", "jsonlite"]
},
"alabaster_schemas": {
"name": "alabaster.schemas",
"version": "1.10.0",
"sha256": "1zg72g6krc1jf4izghqg3shn2zdrvsqljdbhvifismca7bqqn80a",
"depends": []
},
"alabaster_se": {
"name": "alabaster.se",
"version": "1.10.0",
"sha256": "0298m0a16ibfkjsimf35qq0dj8pvzw0y762d6mxajrhbhby8bggs",
"depends": ["BiocGenerics", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment", "alabaster_base", "alabaster_matrix", "alabaster_ranges", "jsonlite"]
},
"alabaster_sfe": {
"name": "alabaster.sfe",
"version": "1.2.0",
"sha256": "1306n9l8xr29pgh77yqsdi5ns3vm80d6i22pyzlxjb0c6j16h9xa",
"depends": ["EBImage", "RBioFormats", "S4Vectors", "SingleCellExperiment", "SpatialFeatureExperiment", "SummarizedExperiment", "alabaster_base", "alabaster_sce", "alabaster_spatial", "jsonlite", "sfarrow", "spatialreg", "spdep", "terra", "xml2"]
},
"alabaster_spatial": {
"name": "alabaster.spatial",
"version": "1.10.0",
"sha256": "022zqn8kvnxm2zlra2w9i43g8lvbiqhjwajkyzkj3pd98i59j41v",
"depends": ["S4Vectors", "SpatialExperiment", "alabaster_base", "alabaster_sce", "rhdf5"]
},
"alabaster_string": {
"name": "alabaster.string",
"version": "1.10.0",
"sha256": "01m93r7v9b00jc8spmfash7c85niw5bhd60bj2hmvmww0wdmrsqb",
"depends": ["Biostrings", "S4Vectors", "alabaster_base"]
},
"alabaster_vcf": {
"name": "alabaster.vcf",
"version": "1.10.0",
"sha256": "1r92dy7qgnz4jqmqv6dinj1g7bs5axylr9yyg41d5h9mcax6vnpn",
"depends": ["Rsamtools", "S4Vectors", "VariantAnnotation", "alabaster_base", "alabaster_se", "alabaster_string"]
},
"alevinQC": {
"name": "alevinQC",
"version": "1.26.0",
"sha256": "0nr21wsfh3an9bczl26xlhmwh2kq21qyjmk5a940w83l1pj6l4q8",
"depends": ["DT", "GGally", "Rcpp", "cowplot", "dplyr", "ggplot2", "rjson", "rlang", "rmarkdown", "shiny", "shinydashboard", "tximport"]
},
"altcdfenvs": {
"name": "altcdfenvs",
"version": "2.72.0",
"sha256": "0b0cak4dk33h1nqi81xyz7b7hdmkd30zg2lnbrm9bdml0sm5c15c",
"depends": ["Biobase", "BiocGenerics", "Biostrings", "S4Vectors", "affy", "hypergraph", "makecdfenv"]
},
"anansi": {
"name": "anansi",
"version": "1.0.0",
"sha256": "0vhj83nv9lnzppijvinm9xargcgsbhpy8475krxp79byb1qpqb52",
"depends": ["Matrix", "MultiAssayExperiment", "S4Vectors", "S7", "SingleCellExperiment", "SummarizedExperiment", "TreeSummarizedExperiment", "forcats", "ggforce", "ggplot2", "ggraph", "igraph", "patchwork", "rlang", "tidygraph"]
},
"anglemania": {
"name": "anglemania",
"version": "1.0.0",
"sha256": "0qbhixgn96iq1f10kyfggq5kvvsx03agd547w8pl48pavrs3qrmv",
"depends": ["Matrix", "Rcpp", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "bigparallelr", "bigstatsr", "checkmate", "digest", "dplyr", "pbapply", "rmio", "tidyr", "withr"]
},
"animalcules": {
"name": "animalcules",
"version": "1.26.0",
"sha256": "1a614al4vh6fzmzw8v8r1hn0fpmazrqfzspvmwg8injg36ab1i9x",
"depends": ["DESeq2", "DT", "GUniFrac", "Matrix", "MultiAssayExperiment", "ROCit", "S4Vectors", "SummarizedExperiment", "XML", "ape", "assertthat", "caret", "covr", "dplyr", "forcats", "ggforce", "ggplot2", "lattice", "limma", "magrittr", "plotly", "rentrez", "reshape2", "scales", "shiny", "shinyjs", "tibble", "tidyr", "tsne", "umap", "vegan"]
},
"annaffy": {
"name": "annaffy",
"version": "1.82.0",
"sha256": "0rn29k1ywsnblqn8zkfqg4x719ghz7i6h6k730yypba38h929h51",
"depends": ["AnnotationDbi", "Biobase", "BiocManager", "DBI", "GO_db"]
},
"anndataR": {
"name": "anndataR",
"version": "1.0.0",
"sha256": "1lyf491kqjg07n1p9w9nraz3piz9shd119y2b8p0sifqkvp8pvzy",
"depends": ["Matrix", "R6", "cli", "lifecycle", "purrr", "reticulate", "rlang"]
},
"annmap": {
"name": "annmap",
"version": "1.52.0",
"sha256": "0s5shla97scq17zc336l4mjmshrj63jcawcy3c06p8msbjgay5y8",
"depends": ["Biobase", "BiocGenerics", "DBI", "GenomicRanges", "IRanges", "RMySQL", "Rsamtools", "digest", "genefilter", "lattice"]
},
"annotate": {
"name": "annotate",
"version": "1.88.0",
"sha256": "1ry6111qca2cx2fav5rk6sdwcng64lv2ahjhggixzflmag4gjqnq",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "DBI", "XML", "httr", "xtable"]
},
"annotationTools": {
"name": "annotationTools",
"version": "1.84.0",
"sha256": "18rn954nrv2dil6hhkmjh3zyihyn8zc5nqdrp63i6ya66602q7g8",
"depends": ["Biobase"]
},
"annotatr": {
"name": "annotatr",
"version": "1.36.0",
"sha256": "02l3xq8mgpabd9j57r40aqv8yd63yarrv2hlbapf3cr516n2hcks",
"depends": ["AnnotationDbi", "AnnotationHub", "GenomicFeatures", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "dplyr", "ggplot2", "readr", "regioneR", "reshape2", "rlang", "rtracklayer"]
},
"anota": {
"name": "anota",
"version": "1.58.0",
"sha256": "15lyasxjsf812gx3ylhl4ajsvbpl8l685wp18gln97qq77l9ldcr",
"depends": ["multtest", "qvalue"]
},
"anota2seq": {
"name": "anota2seq",
"version": "1.32.0",
"sha256": "0kx8jfidm763rw3zhyr18995k3hrgn701k71awwymghagymm2w8n",
"depends": ["DESeq2", "RColorBrewer", "SummarizedExperiment", "edgeR", "limma", "multtest", "qvalue"]
},
"antiProfiles": {
"name": "antiProfiles",
"version": "1.50.0",
"sha256": "0hj48iq6cz231yasqnb564aqpp9k69v9hqh49shj39s81cral2wp",
"depends": ["locfit", "matrixStats"]
},
"apComplex": {
"name": "apComplex",
"version": "2.76.0",
"sha256": "0x2ylr3fv0p88ydnibnzdaz4388vl9af893cc0rq1brrcccsdwhl",
"depends": ["RBGL", "Rgraphviz", "graph", "org_Sc_sgd_db"]
},
"apeglm": {
"name": "apeglm",
"version": "1.32.0",
"sha256": "1my4y7pgl162xv643fj5klsy100mdyyxa7g1l8dwwy134n3ydqch",
"depends": ["GenomicRanges", "Rcpp", "RcppEigen", "RcppNumerical", "SummarizedExperiment", "emdbook"]
},
"appreci8R": {
"name": "appreci8R",
"version": "1.28.0",
"sha256": "0wkscw6hqqzpis0mf1ixlsaf2z52imriyl5mdb5kmnxgrbv172x9",
"depends": ["BSgenome", "BSgenome_Hsapiens_UCSC_hg19", "Biostrings", "COSMIC_67", "DT", "GenomicFeatures", "GenomicRanges", "GenomicScores", "Homo_sapiens", "IRanges", "MafDb_1Kgenomes_phase3_hs37d5", "MafDb_ExAC_r1_0_hs37d5", "MafDb_gnomADex_r2_1_hs37d5", "PolyPhen_Hsapiens_dbSNP131", "Rsamtools", "S4Vectors", "SIFT_Hsapiens_dbSNP137", "SNPlocs_Hsapiens_dbSNP144_GRCh37", "SummarizedExperiment", "TxDb_Hsapiens_UCSC_hg19_knownGene", "VariantAnnotation", "XtraSNPlocs_Hsapiens_dbSNP144_GRCh37", "openxlsx", "rentrez", "seqinr", "shiny", "shinyjs", "stringr"]
},
"aroma_light": {
"name": "aroma.light",
"version": "3.40.0",
"sha256": "1jr8x2hiby46a3n456nnpsjdq37b0f429jh8mlia4zg1wy64bws8",
"depends": ["R_methodsS3", "R_oo", "R_utils", "matrixStats"]
},
"arrayMvout": {
"name": "arrayMvout",
"version": "1.68.0",
"sha256": "0fwss499m64ilf2adk3l71w3xgqbj3lr2g72xwq95a4nz8vvlic2",
"depends": ["Biobase", "affy", "affyContam", "lumi", "mdqc", "parody"]
},
"arrayQuality": {
"name": "arrayQuality",
"version": "1.88.0",
"sha256": "1nkq6ys02jjinprbphikm9pym17bvvh7d5wrpl0jyj7x9jabw443",
"depends": ["RColorBrewer", "gridBase", "hexbin", "limma", "marray"]
},
"artMS": {
"name": "artMS",
"version": "1.28.0",
"sha256": "0sdxcaklcfqjad5kz5lskv04x2p8wxspav7avaznx6wz2xsx68wh",
"depends": ["AnnotationDbi", "MSstats", "RColorBrewer", "UpSetR", "VennDiagram", "bit64", "circlize", "cluster", "corrplot", "data_table", "dplyr", "getopt", "ggdendro", "ggplot2", "ggrepel", "gplots", "limma", "openxlsx", "org_Hs_eg_db", "pheatmap", "plotly", "plyr", "scales", "seqinr", "stringr", "tidyr", "yaml"]
},
"assorthead": {
"name": "assorthead",
"version": "1.4.0",
"sha256": "0ysi3ak87pg7b5iqj9dnwkx11xdrqs0lfcw4q835lrswg92sf9gx",
"depends": []
},
"atSNP": {
"name": "atSNP",
"version": "1.26.0",
"sha256": "12jkk8pabndcavb284ncgxxxlw43bfgcpa5nkp6wchzfyqjzcind",
"depends": ["BSgenome", "BiocFileCache", "BiocParallel", "Rcpp", "data_table", "ggplot2", "lifecycle", "motifStack", "rappdirs", "testthat"]
},
"atena": {
"name": "atena",
"version": "1.16.0",
"sha256": "02jbsk6inh63pcsandwik8cc0dd1q30raddkgxs7pszwlkdk1q73",
"depends": ["AnnotationHub", "BiocGenerics", "BiocParallel", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Matrix", "MatrixGenerics", "Rsamtools", "S4Vectors", "SQUAREM", "Seqinfo", "SummarizedExperiment", "cli", "matrixStats", "sparseMatrixStats"]
},
"attract": {
"name": "attract",
"version": "1.62.0",
"sha256": "14ni9c36gar0cny7dyp433a9fmh96z9l553jwfpvl3hw02g038f7",
"depends": ["AnnotationDbi", "Biobase", "GOstats", "KEGGREST", "cluster", "limma", "org_Hs_eg_db", "reactome_db"]
},
"autonomics": {
"name": "autonomics",
"version": "1.18.0",
"sha256": "02ygvvvkypwdi5rq9xjym4l4wzxn4v6h73nl426cx20q6x7wm33s",
"depends": ["BiocFileCache", "BiocGenerics", "MultiAssayExperiment", "RColorBrewer", "R_utils", "S4Vectors", "SummarizedExperiment", "abind", "arrow", "bit64", "cluster", "codingMatrices", "colorspace", "data_table", "dplyr", "edgeR", "ggforce", "ggplot2", "ggrepel", "gridExtra", "limma", "lme4", "magrittr", "matrixStats", "readxl", "rlang", "scales", "stringi", "survival", "tidyr", "tidyselect", "vsn"]
},
"awst": {
"name": "awst",
"version": "1.18.0",
"sha256": "0caffj4k54qsc2py2411442n7m7bwchxk9lnc8cpbx2v18g546k9",
"depends": ["SummarizedExperiment"]
},
"bacon": {
"name": "bacon",
"version": "1.38.0",
"sha256": "09y0q0dqpay4ag3wmwhqjk140cc44l3a6k3f4fiv47b3cmq50qpg",
"depends": ["BiocParallel", "ellipse", "ggplot2"]
},
"ballgown": {
"name": "ballgown",
"version": "2.42.0",
"sha256": "1c7vy10ga3cswsqwxljbgqlsjg0d2lx9srfknbjy4fkbyrjci15k",
"depends": ["Biobase", "GenomicRanges", "IRanges", "RColorBrewer", "S4Vectors", "Seqinfo", "limma", "rtracklayer", "sva"]
},
"bambu": {
"name": "bambu",
"version": "3.12.0",
"sha256": "0bdwild1lxnizkwlcscl9vjnhqiri79p8vwkgw5a2lxkfj1gz1p8",
"depends": ["BSgenome", "BiocGenerics", "BiocParallel", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rcpp", "RcppArmadillo", "Rsamtools", "S4Vectors", "SummarizedExperiment", "data_table", "dplyr", "tidyr", "xgboost"]
},
"bamsignals": {
"name": "bamsignals",
"version": "1.42.0",
"sha256": "03lqryry0jyangihscjmbsvy3s2skz50jwnl25vb44wzqkqxgmvl",
"depends": ["BiocGenerics", "GenomicRanges", "IRanges", "Rcpp", "Rhtslib"]
},
"bandle": {
"name": "bandle",
"version": "1.14.0",
"sha256": "1nydm87m1knayzs6sz208z2bxr6caabb60p37268cix9x1941qp4",
"depends": ["BH", "Biobase", "BiocParallel", "BiocStyle", "MSnbase", "RColorBrewer", "Rcpp", "RcppArmadillo", "S4Vectors", "circlize", "coda", "dplyr", "ggalluvial", "ggplot2", "ggrepel", "gridExtra", "gtools", "knitr", "lbfgs", "pRoloc", "pRolocdata", "plyr", "rlang", "robustbase", "tidyr"]
},
"banocc": {
"name": "banocc",
"version": "1.34.0",
"sha256": "0y2capm8b2dx68myybzgf74khm22rjqihg9l1g03xpv1k19jlc90",
"depends": ["coda", "mvtnorm", "rstan", "stringr"]
},
"barbieQ": {
"name": "barbieQ",
"version": "1.2.0",
"sha256": "19zzrw4y0lar36pz8izniy5rdck7jn5wy7aqlp6qwrqwim9yl52m",
"depends": ["ComplexHeatmap", "S4Vectors", "SummarizedExperiment", "circlize", "data_table", "dplyr", "ggplot2", "igraph", "limma", "logistf", "magrittr", "tidyr"]
},
"basecallQC": {
"name": "basecallQC",
"version": "1.34.0",
"sha256": "1yyz87r8wcwsggfbrbpy8xiqqs7i4zqw1mqjd0hfyx6yja4kp7fz",
"depends": ["DT", "ShortRead", "XML", "data_table", "dplyr", "ggplot2", "knitr", "lazyeval", "magrittr", "prettydoc", "raster", "rmarkdown", "stringr", "tidyr", "yaml"]
},
"basilisk": {
"name": "basilisk",
"version": "1.22.0",
"sha256": "0127ilysjfp7d2nhrrxd84jk9r6flcgk5f1wgy7r9ivyw484023a",
"depends": ["dir_expiry", "reticulate"]
},
"basilisk_utils": {
"name": "basilisk.utils",
"version": "1.22.0",
"sha256": "1pqdkfg7jifl52ada9d70xhbhknm54g9wzxsnca0q9plgpiddmz9",
"depends": ["dir_expiry"]
},
"batchCorr": {
"name": "batchCorr",
"version": "1.0.0",
"sha256": "08n9k14fwhljp2mfcyza0zwsd04kwnk1w4x76mgi8bn9r6a60vgr",
"depends": ["BiocParallel", "SummarizedExperiment", "mclust", "reshape"]
},
"batchelor": {
"name": "batchelor",
"version": "1.26.0",
"sha256": "0s991n072s7vbcj2ad5zh079iwwcqx92m6h0wmif3wma0qpw16g2",
"depends": ["BiocGenerics", "BiocNeighbors", "BiocParallel", "BiocSingular", "DelayedArray", "DelayedMatrixStats", "Matrix", "Rcpp", "ResidualMatrix", "S4Vectors", "ScaledMatrix", "SingleCellExperiment", "SparseArray", "SummarizedExperiment", "beachmat", "igraph", "scuttle"]
},
"bayNorm": {
"name": "bayNorm",
"version": "1.28.0",
"sha256": "0cpc1l8xsmzz8qfc9izq6a6ajv8bl3yrv64qhji3nq9bv4ln5f7z",
"depends": ["BB", "BiocParallel", "MASS", "Matrix", "Rcpp", "RcppArmadillo", "RcppProgress", "SingleCellExperiment", "SummarizedExperiment", "doSNOW", "fitdistrplus", "foreach", "iterators", "locfit"]
},
"baySeq": {
"name": "baySeq",
"version": "2.44.0",
"sha256": "0zljz45xcixipyprirvvzyx9v2hjbwr6wdv9zz0b8gpdriv5c0g0",
"depends": ["GenomicRanges", "abind", "edgeR"]
},
"bcSeq": {
"name": "bcSeq",
"version": "1.32.0",
"sha256": "0r2qdn676lfmk56id0v6ahj2v6ajaxgsrgr2x8slzw6zijybvlsc",
"depends": ["Biostrings", "Matrix", "Rcpp"]
},
"beachmat": {
"name": "beachmat",
"version": "2.26.0",
"sha256": "1s2v4d49yc1r1cla1p54zkcw14bazgz8fmzb1khqngbi26apmk0p",
"depends": ["BiocGenerics", "DelayedArray", "Matrix", "Rcpp", "SparseArray", "assorthead"]
},
"beachmat_hdf5": {
"name": "beachmat.hdf5",
"version": "1.8.0",
"sha256": "0dp8p111ar64syvh4x7s4rwjj4vhil1c09r5am48c0cg789qx49y",
"depends": ["DelayedArray", "HDF5Array", "Rcpp", "Rhdf5lib", "assorthead", "beachmat"]
},
"beachmat_tiledb": {
"name": "beachmat.tiledb",
"version": "1.2.0",
"sha256": "1x6nz89mjp83qh70c3bbrq8zfb6fk0pv75hsnhi7dsvk1sp9d537",
"depends": ["DelayedArray", "Rcpp", "TileDBArray", "assorthead", "beachmat", "tiledb"]
},
"bedbaser": {
"name": "bedbaser",
"version": "1.2.0",
"sha256": "13ncvwpm7zplyhkqg8pmn4nkd4lv2dgwb2pjr25xciji4ixgdcmq",
"depends": ["AnVIL", "BiocFileCache", "GenomeInfoDb", "GenomicRanges", "R_utils", "dplyr", "httr", "purrr", "rlang", "rtracklayer", "stringr", "tibble", "tidyr"]
},
"beer": {
"name": "beer",
"version": "1.14.0",
"sha256": "0c3plk1cibcka6ky043h98ibqsy8nmhs812n3bvafq9w3wz6dch0",
"depends": ["BiocParallel", "PhIPData", "SummarizedExperiment", "cli", "edgeR", "progressr", "rjags"]
},
"betaHMM": {
"name": "betaHMM",
"version": "1.6.0",
"sha256": "00j4k8z0kfr14k3ahfzqhc3sf00ll7yvwhyjhbcwr6vi8dpm7s01",
"depends": ["GenomicRanges", "S4Vectors", "SummarizedExperiment", "cowplot", "doParallel", "dplyr", "foreach", "ggplot2", "pROC", "scales", "stringr", "tidyr", "tidyselect"]
},
"bettr": {
"name": "bettr",
"version": "1.6.0",
"sha256": "1ns7jazl31w2ivbbnf3f8502nszkwsskn7rkl7kjvh9l8lrakdyw",
"depends": ["ComplexHeatmap", "DT", "Hmisc", "S4Vectors", "SummarizedExperiment", "bslib", "circlize", "cowplot", "dplyr", "ggplot2", "rlang", "scales", "shiny", "shinyjqui", "sortable", "tibble", "tidyr"]
},
"bigmelon": {
"name": "bigmelon",
"version": "1.36.0",
"sha256": "0m5nc9vsm1y1mgdq7fscdnfmdxs85xml863lsyc7vxknlgpdl6yq",
"depends": ["Biobase", "BiocGenerics", "GEOquery", "gdsfmt", "illuminaio", "methylumi", "minfi", "wateRmelon"]
},
"bioCancer": {
"name": "bioCancer",
"version": "1.38.0",
"sha256": "08b34kcx3h6mk9f7mlvbqpasyb0wa0vp07s685biphwl7355zdpn",
"depends": ["AlgDesign", "AnnotationDbi", "Biobase", "DOSE", "DT", "DiagrammeR", "GO_db", "R_methodsS3", "R_oo", "ReactomePA", "XML", "cBioPortalData", "clusterProfiler", "dplyr", "geNetClassifier", "htmlwidgets", "org_Bt_eg_db", "org_Hs_eg_db", "plyr", "r_import", "radiant_data", "reactome_db", "shiny", "shinythemes", "tibble", "tidyr", "visNetwork"]
},
"bioDist": {
"name": "bioDist",
"version": "1.82.0",
"sha256": "1gyqvh0wpq64nw26dhycn98366yg0cgvaz7k5mxa68fh7zjy8ima",
"depends": ["Biobase", "KernSmooth"]
},
"bioassayR": {
"name": "bioassayR",
"version": "1.48.0",
"sha256": "1jyw6msz40k47ai919zc2y9j13g2y745wh9r4gg794zlv092l1jg",
"depends": ["BiocGenerics", "ChemmineR", "DBI", "Matrix", "RSQLite", "XML", "rjson"]
},
"biobroom": {
"name": "biobroom",
"version": "1.42.0",
"sha256": "0d4c9qqwd5zm5y9xcskfjashqkdiy0ri3gsj1kmfb5zmv8i8666s",
"depends": ["Biobase", "broom", "dplyr", "tidyr"]
},
"biobtreeR": {
"name": "biobtreeR",
"version": "1.22.0",
"sha256": "0kcnphyqlr28h63ih6hy6a8kmcf3cgs0dihfkmmxmybqx7af6n43",
"depends": ["httpuv", "httr", "jsonlite", "stringi"]
},
"biocGraph": {
"name": "biocGraph",
"version": "1.72.0",
"sha256": "13bc5kqvfpx2kl9hs2hcna8z73rjgdyn5cm30016f7m7xpggnkna",
"depends": ["BiocGenerics", "Rgraphviz", "geneplotter", "graph"]
},
"biocViews": {
"name": "biocViews",
"version": "1.78.0",
"sha256": "1dfsfj4dm9wnh4qr1sqdrwzccl3pgw58j17vr3i1bvxkrq31p1ws",
"depends": ["Biobase", "BiocManager", "RBGL", "RCurl", "RUnit", "XML", "graph"]
},
"biocmake": {
"name": "biocmake",
"version": "1.2.0",
"sha256": "1f5xbdfdg0nwlv3csszjyqb3s34369fifazd7hzys15z6y4mhqnc",
"depends": ["dir_expiry"]
},
"biocroxytest": {
"name": "biocroxytest",
"version": "1.6.0",
"sha256": "14k4mk4xyi1r1r1836x73br188n3wj86s2h2szkj26hhncayy3np",
"depends": ["cli", "glue", "roxygen2", "stringr"]
},
"biocthis": {
"name": "biocthis",
"version": "1.20.0",
"sha256": "0svn4156jnf1ql1ln6x0c80h7z0gkxlfcn3q644ahpi18s6w0pil",
"depends": ["BiocManager", "fs", "glue", "rlang", "styler", "usethis"]
},
"biodb": {
"name": "biodb",
"version": "1.18.0",
"sha256": "0462420y1pz1h09kd3bgwz9jazaqd4yzwz5815x438lfsdj5vxvv",
"depends": ["R6", "RSQLite", "Rcpp", "XML", "chk", "fscache", "jsonlite", "lgr", "lifecycle", "openssl", "plyr", "progress", "rappdirs", "sched", "sqlq", "stringr", "testthat", "withr", "yaml"]
},
"biodbChebi": {
"name": "biodbChebi",
"version": "1.16.0",
"sha256": "1kk9i3jhg982s39nvxqhpi8q7lxhdyb0scvx34fxaaqgfjb3lxkk",
"depends": ["R6", "biodb"]
},
"biomaRt": {
"name": "biomaRt",
"version": "2.66.0",
"sha256": "0xvwn4s7lxd2g98x6bng4w2vvxp26s57wzq2pij4f117xscad42f",
"depends": ["AnnotationDbi", "BiocFileCache", "curl", "httr2", "progress", "stringr", "xml2"]
},
"biomformat": {
"name": "biomformat",
"version": "1.38.0",
"sha256": "1ydcgifdrgg48y7qxg0gw30h332y3yk3k3n17fajkv58mlvyx1yc",
"depends": ["Matrix", "jsonlite", "plyr", "rhdf5"]
},
"biomvRCNS": {
"name": "biomvRCNS",
"version": "1.50.0",
"sha256": "1avg6nzw15fs2c02yr33ny4gmnx4ygn5f3l2dk0cfxd6q6cjpjyy",
"depends": ["GenomicRanges", "Gviz", "IRanges", "mvtnorm"]
},
"biosigner": {
"name": "biosigner",
"version": "1.38.0",
"sha256": "1c3sv00g1b8v8pb98riszpdwazx2wpvb2sm5vh89b7sdy4hbppfk",
"depends": ["Biobase", "MultiAssayExperiment", "MultiDataSet", "SummarizedExperiment", "e1071", "randomForest", "ropls"]
},
"biotmle": {
"name": "biotmle",
"version": "1.34.0",
"sha256": "17mjhybxffr36awc85qfsdbndzin90x4xq2isi2cdag52vr6jczr",
"depends": ["BiocGenerics", "BiocParallel", "S4Vectors", "SummarizedExperiment", "assertthat", "dplyr", "drtmle", "ggplot2", "ggsci", "limma", "superheat", "tibble"]
},
"biovizBase": {
"name": "biovizBase",
"version": "1.58.0",
"sha256": "1fx6plg3jdy9frs7p6bmxnbkyxa06bw9iyyqlw96ifi5zarkf8vl",
"depends": ["AnnotationDbi", "AnnotationFilter", "BiocGenerics", "Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "Hmisc", "IRanges", "RColorBrewer", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "VariantAnnotation", "dichromat", "ensembldb", "rlang", "scales"]
},
"biscuiteer": {
"name": "biscuiteer",
"version": "1.24.0",
"sha256": "074gqvjcl8y30a6s0ivjrdf1lcyafj6l5krdd88q0ldlsik1z7fk",
"depends": ["Biobase", "BiocGenerics", "BiocParallel", "DelayedMatrixStats", "GenomeInfoDb", "GenomicRanges", "HDF5Array", "Homo_sapiens", "IRanges", "Matrix", "Mus_musculus", "QDNAseq", "R_utils", "Rsamtools", "S4Vectors", "SummarizedExperiment", "VariantAnnotation", "biscuiteerData", "bsseq", "data_table", "dmrseq", "gtools", "impute", "matrixStats", "qualV", "readr", "rtracklayer"]
},
"blacksheepr": {
"name": "blacksheepr",
"version": "1.24.0",
"sha256": "0bb9l54wppqz8llq71riqk29mg4dibnyx62k5pk30rrzahp71m02",
"depends": ["ComplexHeatmap", "RColorBrewer", "SummarizedExperiment", "circlize", "pasilla", "viridis"]
},
"blase": {
"name": "blase",
"version": "1.0.0",
"sha256": "0hg3bc0lnc47ssj2dslddq6wzkq2snjck97zbk9n4rpim0hmrwz0",
"depends": ["BiocParallel", "Matrix", "MatrixGenerics", "Seurat", "SingleCellExperiment", "SummarizedExperiment", "boot", "dplyr", "ggplot2", "mgcv", "patchwork", "rlang", "scater", "viridis"]
},
"bluster": {
"name": "bluster",
"version": "1.20.0",
"sha256": "0ghzvj8s4hy88w4rgx817zn0ipxga31q6gj713pvjlfj6bgqvjs4",
"depends": ["BiocNeighbors", "BiocParallel", "Matrix", "Rcpp", "S4Vectors", "assorthead", "cluster", "igraph"]
},
"bnbc": {
"name": "bnbc",
"version": "1.32.0",
"sha256": "1p79j6a499ly3i2wil1fh6ipi2sbfhihrnajq3br0idgjyizqjsw",
"depends": ["BiocGenerics", "EBImage", "GenomicRanges", "HiCBricks", "IRanges", "Rcpp", "S4Vectors", "Seqinfo", "SummarizedExperiment", "data_table", "matrixStats", "preprocessCore", "rhdf5", "sva"]
},
"bnem": {
"name": "bnem",
"version": "1.18.0",
"sha256": "1hcd98zrvgcj19k546j0kjbivjsndc4bryrj9aczkw7f7mbgzpjz",
"depends": ["Biobase", "CellNOptR", "RColorBrewer", "Rgraphviz", "affy", "binom", "cluster", "epiNEM", "flexclust", "graph", "limma", "matrixStats", "mnem", "rmarkdown", "snowfall", "sva", "vsn"]
},
"borealis": {
"name": "borealis",
"version": "1.14.0",
"sha256": "018srka1f5c4yv644fq66bgj19x1mmyq97xpgg2bzp0j787721lw",
"depends": ["Biobase", "DSS", "GenomicRanges", "R_utils", "bsseq", "cowplot", "doParallel", "dplyr", "foreach", "gamlss", "gamlss_dist", "ggplot2", "plyr", "purrr", "rlang", "snow"]
},
"breakpointR": {
"name": "breakpointR",
"version": "1.28.0",
"sha256": "0wmrbm1qssv9njxs3m40kag1v0xf1zrskb38vlzb2q3669gpjr9q",
"depends": ["BiocGenerics", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "breakpointRdata", "cowplot", "doParallel", "foreach", "ggplot2", "gtools"]
},
"brendaDb": {
"name": "brendaDb",
"version": "1.24.0",
"sha256": "0snaip1b7p3b7bjzcjxmwf6ivi2lv5ksawamkksfk5h4g4vpfpa5",
"depends": ["BiocFileCache", "BiocParallel", "Rcpp", "crayon", "dplyr", "magrittr", "purrr", "rappdirs", "rlang", "stringr", "tibble", "tidyr"]
},
"bsseq": {
"name": "bsseq",
"version": "1.46.0",
"sha256": "1x2d17s0dv0wmn4lw5xmq8wjbly4llaayiz47f5l115il577l4ig",
"depends": ["BSgenome", "Biobase", "BiocGenerics", "BiocParallel", "Biostrings", "DelayedArray", "DelayedMatrixStats", "GenomicRanges", "HDF5Array", "IRanges", "R_utils", "Rcpp", "S4Vectors", "Seqinfo", "SummarizedExperiment", "assorthead", "beachmat", "data_table", "gtools", "limma", "locfit", "permute", "rhdf5", "scales"]
},
"bugsigdbr": {
"name": "bugsigdbr",
"version": "1.16.0",
"sha256": "13mfx8g4hd7d3rdmbfsr9a7z6zkggllaj48h6sbr6h989g86sxnp",
"depends": ["BiocFileCache", "vroom"]
},
"bumphunter": {
"name": "bumphunter",
"version": "1.52.0",
"sha256": "1rkfhpfi30jas48ldy6qxj1dkkij7bfq3d4xsbwzmm0ip3hdipaj",
"depends": ["AnnotationDbi", "BiocGenerics", "GenomicFeatures", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "doRNG", "foreach", "iterators", "limma", "locfit", "matrixStats"]
},
"cBioPortalData": {
"name": "cBioPortalData",
"version": "2.21.5",
"sha256": "0by3295xq1b6di5d50zqqv7sbn6g68sgdn2fvyxd4h88sr87ypb5",
"depends": ["AnVIL", "BiocBaseUtils", "BiocFileCache", "GenomicRanges", "IRanges", "MultiAssayExperiment", "RTCGAToolbox", "RaggedExperiment", "S4Vectors", "Seqinfo", "SummarizedExperiment", "TCGAutils", "digest", "dplyr", "httr", "readr", "tibble", "tidyr"]
},
"cTRAP": {
"name": "cTRAP",
"version": "1.28.0",
"sha256": "0arpwi2iax013d3vzjxyjk7dwq99p63356wfhcilqk0mprf2sa7p",
"depends": ["AnnotationDbi", "AnnotationHub", "DT", "R_utils", "binr", "cowplot", "data_table", "dplyr", "fastmatch", "fgsea", "ggplot2", "ggrepel", "highcharter", "htmltools", "httr", "limma", "pbapply", "purrr", "qs", "readxl", "reshape2", "rhdf5", "rlang", "scales", "shiny", "shinycssloaders", "tibble"]
},
"cageminer": {
"name": "cageminer",
"version": "1.16.0",
"sha256": "02ah6mgsx0gchrjx5mfhypw5c9fww4xh4a7qpj8k1v25l200q43f",
"depends": ["BioNERO", "GenomeInfoDb", "GenomicRanges", "IRanges", "ggbio", "ggplot2", "ggtext", "reshape2", "rlang"]
},
"calm": {
"name": "calm",
"version": "1.24.0",
"sha256": "1p045a9phzkskllqmgk34c9bd2gcyvndzhp2vrna1qjz4dmwk93a",
"depends": ["mgcv"]
},
"canceR": {
"name": "canceR",
"version": "1.44.0",
"sha256": "0famd2k80mm58vswkvkz8bv29cp23a58m0fbb3jcilyp7d0k6v97",
"depends": ["Biobase", "Formula", "GSEABase", "RUnit", "R_methodsS3", "R_oo", "cBioPortalData", "circlize", "dplyr", "geNetClassifier", "phenoTest", "plyr", "rpart", "survival", "tidyr", "tkrplot"]
},
"cancerclass": {
"name": "cancerclass",
"version": "1.54.0",
"sha256": "0mj4s2yykywmwmlr8fi94r0v1aql68xpsbqgz2yh47fpvhair2kh",
"depends": ["Biobase", "binom"]
},
"cardelino": {
"name": "cardelino",
"version": "1.12.0",
"sha256": "1r1dd9wmi8amv1825j74kmqjnlhxvcdqaq1g7pf48wa3qxyrylip",
"depends": ["GenomeInfoDb", "GenomicRanges", "Matrix", "S4Vectors", "VariantAnnotation", "combinat", "ggplot2", "ggtree", "matrixStats", "pheatmap", "snpStats", "vcfR"]
},
"casper": {
"name": "casper",
"version": "2.44.0",
"sha256": "0kz6h9ixs3lij8d0zvf3243zczqg3wbi75xq4la3apsb73nlail2",
"depends": ["Biobase", "BiocGenerics", "EBarrays", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "VGAM", "coda", "gaga", "gtools", "limma", "mgcv", "rtracklayer", "sqldf", "survival"]
},
"categoryCompare": {
"name": "categoryCompare",
"version": "1.54.0",
"sha256": "055g2qj7yjs9hxjaig3ja9v9p8is2swgxwd1ps6my1vgyk361bcv",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "Category", "GOstats", "GSEABase", "RCy3", "annotate", "colorspace", "graph", "hwriter"]
},
"cbaf": {
"name": "cbaf",
"version": "1.32.0",
"sha256": "15dzdga77mz77bjn152cw87gn84k05ijmnnxkxab25y4mdll3p1f",
"depends": ["BiocFileCache", "RColorBrewer", "cBioPortalData", "genefilter", "gplots", "openxlsx", "zip"]
},
"cbpManager": {
"name": "cbpManager",
"version": "1.18.0",
"sha256": "05qihizwrz0yaqcg34mdx135ysr7kys7hnhv6xdm60ghh2l68iqd",
"depends": ["DT", "basilisk", "dplyr", "htmltools", "jsonlite", "magrittr", "markdown", "plyr", "rapportools", "reticulate", "rintrojs", "rlang", "shiny", "shinyBS", "shinycssloaders", "shinydashboard", "vroom"]
},
"ccImpute": {
"name": "ccImpute",
"version": "1.12.0",
"sha256": "09g11pbrni0ifc756h393jm0bfivnx8n72iq8rz1k1sjw009xdq0",
"depends": ["BiocParallel", "Matrix", "Rcpp", "RcppEigen", "SingleCellExperiment", "SummarizedExperiment", "irlba", "sparseMatrixStats"]
},
"ccfindR": {
"name": "ccfindR",
"version": "1.30.0",
"sha256": "1rxfy8dnxg047v65d27k30gnixbhzfq0fg7fx5y5adljnj352i4b",
"depends": ["Matrix", "RColorBrewer", "Rcpp", "RcppEigen", "Rdpack", "Rmpi", "Rtsne", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "ape", "gtools", "irlba"]
},
"ccrepe": {
"name": "ccrepe",
"version": "1.46.0",
"sha256": "02i4izk0p7h1v96fmhjhwd7z8m2kql3akk620qv2z904ndlg8hdl",
"depends": ["infotheo"]
},
"ceRNAnetsim": {
"name": "ceRNAnetsim",
"version": "1.22.0",
"sha256": "149ykxsgfhw5xmdql6nba3damxi5m8ybbpc9a8jybqxbwhsnc3ab",
"depends": ["dplyr", "furrr", "future", "ggplot2", "ggraph", "igraph", "purrr", "rlang", "tibble", "tidygraph", "tidyr"]
},
"celaref": {
"name": "celaref",
"version": "1.28.0",
"sha256": "1xlkqc5880rrryrbpl4fnh5vh171imf8jlc8lxz5aygvl3hhpgvy",
"depends": ["BiocGenerics", "DelayedArray", "MAST", "Matrix", "S4Vectors", "SummarizedExperiment", "dplyr", "ggplot2", "magrittr", "readr", "rlang", "tibble"]
},
"celda": {
"name": "celda",
"version": "1.26.0",
"sha256": "1qq52kpzq20whx9v0b6l29hkghrn5m3yilhc0gz23m2cafr0nni5",
"depends": ["ComplexHeatmap", "DelayedArray", "MCMCprecision", "Matrix", "RColorBrewer", "Rcpp", "RcppEigen", "Rtsne", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "circlize", "data_table", "dbscan", "dendextend", "digest", "doParallel", "enrichR", "foreach", "ggdendro", "ggplot2", "ggrepel", "gridExtra", "gtable", "matrixStats", "pROC", "plyr", "reshape2", "scales", "scater", "scran", "stringr", "uwot", "withr"]
},
"cellbaseR": {
"name": "cellbaseR",
"version": "1.34.0",
"sha256": "1d7p7waavsxgqarj9jhyjara86v6xr3ipdshhldhvk70r5lm0nan",
"depends": ["BiocParallel", "R_utils", "Rsamtools", "data_table", "doParallel", "foreach", "httr", "jsonlite", "pbapply", "tidyr"]
},
"cellity": {
"name": "cellity",
"version": "1.38.0",
"sha256": "0hddivf2yf670bvs41fd12nzrs0lxqsw8fcxi5jrp7awzk3v777r",
"depends": ["AnnotationDbi", "e1071", "ggplot2", "mvoutlier", "org_Hs_eg_db", "org_Mm_eg_db", "robustbase", "topGO"]
},
"cellmig": {
"name": "cellmig",
"version": "1.0.0",
"sha256": "1v617x19v3a8kyy541awpfah35v7qxkhdf9by0fhrsk7igkmgdl6",
"depends": ["BH", "Rcpp", "RcppEigen", "RcppParallel", "StanHeaders", "ape", "ggforce", "ggplot2", "ggtree", "patchwork", "reshape2", "rstan", "rstantools", "scales"]
},
"cellmigRation": {
"name": "cellmigRation",
"version": "1.18.0",
"sha256": "1j0bf7l780j3z6nb49g3b8yycifp1wym8zb7iy3dfx5d7i297aaz",
"depends": ["FME", "FactoMineR", "Hmisc", "SpatialTools", "doParallel", "foreach", "matrixStats", "reshape2", "sp", "tiff", "vioplot"]
},
"cellscape": {
"name": "cellscape",
"version": "1.34.0",
"sha256": "1lnyqhjw78vhimwsch94qxnam3wq77x2apgr054ir9rarh38i5lj",
"depends": ["dplyr", "gtools", "htmlwidgets", "jsonlite", "reshape2", "stringr"]
},
"cellxgenedp": {
"name": "cellxgenedp",
"version": "1.14.0",
"sha256": "13pab6l4r3sc47vh8mf7f2rd4ym9cjvagics29yfxpb3zdql66h6",
"depends": ["DT", "cli", "curl", "dplyr", "httr", "rjsoncons", "shiny"]
},
"censcyt": {
"name": "censcyt",
"version": "1.18.0",
"sha256": "08kmpqwq3aswpkmg0n5720b6v0xwp2x8g353mwg4hd9cywjfvhhd",
"depends": ["BiocParallel", "MASS", "S4Vectors", "SummarizedExperiment", "broom_mixed", "diffcyt", "dirmult", "dplyr", "edgeR", "fitdistrplus", "lme4", "magrittr", "mice", "multcomp", "purrr", "rlang", "stringr", "survival", "tibble", "tidyr"]
},
"cfDNAPro": {
"name": "cfDNAPro",
"version": "1.16.0",
"sha256": "16387in3j9i6q059l1kh64lj3kh3wd23ia2x80dm7azdlykr616l",
"depends": ["BSgenome_Hsapiens_NCBI_GRCh38", "BSgenome_Hsapiens_UCSC_hg19", "BSgenome_Hsapiens_UCSC_hg38", "BiocGenerics", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "dplyr", "ggplot2", "magrittr", "plyranges", "quantmod", "rlang", "stringr", "tibble"]
},
"cfTools": {
"name": "cfTools",
"version": "1.10.0",
"sha256": "1d9slykcph6xkbni1msnn9vmsh7rl6xddpbmllf0bv2bbxmhh6wc",
"depends": ["BH", "GenomicRanges", "R_utils", "Rcpp", "basilisk", "cfToolsData"]
},
"cfdnakit": {
"name": "cfdnakit",
"version": "1.8.0",
"sha256": "0qmqmxgvjfv35xaliyr63visqkhjny8nlqbrncpmj7w6p2b1ixi5",
"depends": ["Biobase", "GenomeInfoDb", "GenomicRanges", "IRanges", "PSCBS", "QDNAseq", "Rsamtools", "S4Vectors", "dplyr", "ggplot2", "magrittr", "rlang"]
},
"cghMCR": {
"name": "cghMCR",
"version": "1.68.0",
"sha256": "1cwpi4d904s7g0rh35fqqg4d9xg5wn3h776dh4kkf94pbrrlfprc",
"depends": ["BiocGenerics", "CNTools", "DNAcopy", "limma"]
},
"chevreulPlot": {
"name": "chevreulPlot",
"version": "1.2.0",
"sha256": "0hmn44ljkj26is2dbr9f412pcawi95v3n66mq7rkzqqgq6ndryni",
"depends": ["ComplexHeatmap", "EnsDb_Hsapiens_v86", "S4Vectors", "SingleCellExperiment", "chevreulProcess", "circlize", "cluster", "clustree", "dplyr", "forcats", "fs", "ggplot2", "patchwork", "plotly", "purrr", "scales", "scater", "scran", "scuttle", "stringr", "tibble", "tidyr", "tidyselect", "wiggleplotr"]
},
"chevreulProcess": {
"name": "chevreulProcess",
"version": "1.2.0",
"sha256": "14h9a96skiricsdv05gcyng8drynii18s1c3ffg7py8hzkw2wxqa",
"depends": ["DBI", "EnsDb_Hsapiens_v86", "GenomicFeatures", "RSQLite", "S4Vectors", "SingleCellExperiment", "batchelor", "bluster", "circlize", "cluster", "dplyr", "ensembldb", "fs", "glue", "megadepth", "purrr", "scater", "scran", "scuttle", "stringr", "tibble", "tidyr", "tidyselect"]
},
"chihaya": {
"name": "chihaya",
"version": "1.10.0",
"sha256": "1wc4bj9vsp6h06b0rwsswzsv4zx81j17pnx77hjigbcd03j9xv7l",
"depends": ["DelayedArray", "HDF5Array", "Matrix", "Rcpp", "Rhdf5lib", "rhdf5"]
},
"chimeraviz": {
"name": "chimeraviz",
"version": "1.36.0",
"sha256": "12x3q9zm25qrpm4z4vlfmp8wynbxcmdw2fp486m8ys7fmdzpl0lk",
"depends": ["AnnotationDbi", "AnnotationFilter", "BiocStyle", "Biostrings", "DT", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "Gviz", "IRanges", "RCircos", "RColorBrewer", "Rgraphviz", "Rsamtools", "S4Vectors", "checkmate", "data_table", "dplyr", "ensembldb", "graph", "gtools", "magick", "org_Hs_eg_db", "org_Mm_eg_db", "plyr", "rmarkdown"]
},
"chipenrich": {
"name": "chipenrich",
"version": "2.34.0",
"sha256": "0d3jda48r8q9w8pplisfbjvilyvfkm7q7bhylqzrc6v0zahlx27l",
"depends": ["AnnotationDbi", "BiocGenerics", "GenomicRanges", "IRanges", "MASS", "S4Vectors", "Seqinfo", "chipenrich_data", "lattice", "latticeExtra", "mgcv", "org_Dm_eg_db", "org_Dr_eg_db", "org_Hs_eg_db", "org_Mm_eg_db", "org_Rn_eg_db", "plyr", "rms", "rtracklayer", "stringr"]
},
"chipseq": {
"name": "chipseq",
"version": "1.60.0",
"sha256": "15vxg462svh33460xfas5kxc96nnlkprq442gplmspsiwb0jhjf3",
"depends": ["BiocGenerics", "GenomicRanges", "IRanges", "S4Vectors", "ShortRead", "lattice"]
},
"chopsticks": {
"name": "chopsticks",
"version": "1.76.0",
"sha256": "120b9c8g5mm2fxf97xcmgp75x8qmnw01ih53ny6a4940wgji07as",
"depends": ["survival"]
},
"chromDraw": {
"name": "chromDraw",
"version": "2.40.0",
"sha256": "09rpbaz2jds6c3h3mm50cjcdr8za8x5127pvr6mf7ly6g7qyqinp",
"depends": ["GenomicRanges", "Rcpp"]
},
"chromPlot": {
"name": "chromPlot",
"version": "1.38.0",
"sha256": "0hq76qm6r5c5cpcb9zzbxfq4yhhs2fxdxhsyvglz9nhnris4c104",
"depends": ["GenomicRanges", "biomaRt"]
},
"chromVAR": {
"name": "chromVAR",
"version": "1.32.0",
"sha256": "13yb4ykcapn0i2w1aav3pm3k8yyhfqkibrabd3fzab5gn9kbwwm9",
"depends": ["BSgenome", "BiocGenerics", "BiocParallel", "Biostrings", "DT", "GenomicRanges", "IRanges", "Matrix", "RColorBrewer", "Rcpp", "RcppArmadillo", "Rsamtools", "Rtsne", "S4Vectors", "Seqinfo", "SummarizedExperiment", "TFBSTools", "ggplot2", "miniUI", "nabor", "plotly", "shiny"]
},
"cicero": {
"name": "cicero",
"version": "1.28.0",
"sha256": "1ibxynw77a8mqv9av7z828wcazjpm4sfp83hd412f2rmgkls895x",
"depends": ["Biobase", "BiocGenerics", "FNN", "GenomicRanges", "Gviz", "IRanges", "Matrix", "S4Vectors", "VGAM", "assertthat", "data_table", "dplyr", "ggplot2", "glasso", "igraph", "monocle", "plyr", "reshape2", "stringi", "stringr", "tibble", "tidyr"]
},
"cigarillo": {
"name": "cigarillo",
"version": "1.0.0",
"sha256": "07ayin3ydibhbv5qxi1bapdw2yf759k3azj57kqvmdpqsdwz1nm9",
"depends": ["BiocGenerics", "Biostrings", "IRanges", "S4Vectors"]
},
"circRNAprofiler": {
"name": "circRNAprofiler",
"version": "1.24.0",
"sha256": "0pq3lxpwb25rkw2g5ykv8xiiq7zppp6r1zyvaykvg8jaaina0mx8",
"depends": ["AnnotationHub", "BSgenome", "BSgenome_Hsapiens_UCSC_hg19", "Biostrings", "DESeq2", "GenomeInfoDb", "GenomicRanges", "IRanges", "R_utils", "S4Vectors", "dplyr", "edgeR", "ggplot2", "gwascat", "magrittr", "readr", "reshape2", "rlang", "rtracklayer", "seqinr", "stringi", "stringr", "universalmotif"]
},
"cleanUpdTSeq": {
"name": "cleanUpdTSeq",
"version": "1.48.0",
"sha256": "1816qqksabhyjzn5kprqmzsqjyq39rgi5kmbylr38ml4idsgw050",
"depends": ["BSgenome", "BSgenome_Drerio_UCSC_danRer7", "Biostrings", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "e1071", "seqinr", "stringr"]
},
"cleaver": {
"name": "cleaver",
"version": "1.48.0",
"sha256": "1xi1n9k40cy7fmizdhjb4cbplpsagqfzfsk26k4zfr6wwwgjphs4",
"depends": ["Biostrings", "IRanges", "S4Vectors"]
},
"clevRvis": {
"name": "clevRvis",
"version": "1.10.0",
"sha256": "09wlklwpz1bhmm1ca6nxx0a3mzmdxnasn960mnksc7srcpqs4m64",
"depends": ["DT", "R_utils", "colorspace", "colourpicker", "cowplot", "dplyr", "ggiraph", "ggnewscale", "ggplot2", "ggraph", "htmlwidgets", "igraph", "magrittr", "patchwork", "purrr", "readr", "readxl", "shiny", "shinyWidgets", "shinycssloaders", "shinydashboard", "shinyhelper", "tibble"]
},
"cliProfiler": {
"name": "cliProfiler",
"version": "1.16.0",
"sha256": "07pzyhwib8mz8bykkygrspyss4ljckj39js60fwig1y0li45b783",
"depends": ["BSgenome", "Biostrings", "GenomicRanges", "S4Vectors", "dplyr", "ggplot2", "rtracklayer"]
},
"clippda": {
"name": "clippda",
"version": "1.60.0",
"sha256": "10607r90flb2hxfl38mxsrjbgwm551pm7hy8phnffm8g8np0nksl",
"depends": ["Biobase", "lattice", "limma", "rgl", "scatterplot3d", "statmod"]
},
"clipper": {
"name": "clipper",
"version": "1.50.0",
"sha256": "0ijw8zy19z8l3b4bz0xa412frsmw6jkfjrqbw2yj7cx6sk73hp6y",
"depends": ["Biobase", "KEGGgraph", "Matrix", "Rcpp", "corpcor", "gRbase", "graph", "igraph", "qpgraph"]
},
"cliqueMS": {
"name": "cliqueMS",
"version": "1.24.0",
"sha256": "03j3xr5bmgs34zb2wq279mjkv4grz6ix9m3azg5d0fmxlndsqqb5",
"depends": ["BH", "MSnbase", "Rcpp", "RcppArmadillo", "coop", "igraph", "matrixStats", "slam", "xcms"]
},
"clst": {
"name": "clst",
"version": "1.58.0",
"sha256": "0f1l5fgvbqw8mamllqdy2v903vjdd3bpxgprr9ds4zviapwcx5a2",
"depends": ["ROC", "lattice"]
},
"clstutils": {
"name": "clstutils",
"version": "1.58.0",
"sha256": "0m9wyrndnhq959hqjk6z7cvzr9d50rw2nrzzdndssyjpfhnnkjfi",
"depends": ["RSQLite", "ape", "clst", "lattice", "rjson"]
},
"clustComp": {
"name": "clustComp",
"version": "1.38.0",
"sha256": "094wp5bf1f521jd7f0pc2w4fvry9vj3w0fx5pr8d9hqph8l60522",
"depends": ["sm"]
},
"clustSIGNAL": {
"name": "clustSIGNAL",
"version": "1.2.0",
"sha256": "1mydppyp4l5imhmbn833fr94imipcbwlkbx4i2v9r3g1c1gbgf2s",
"depends": ["BiocNeighbors", "BiocParallel", "Matrix", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "bluster", "harmony", "reshape2", "scater"]
},
"clusterExperiment": {
"name": "clusterExperiment",
"version": "2.30.0",
"sha256": "0lcahnfcld24xjj0fg9xmwapm3pnnf02sgf9gmvp5nkp6pjhmf5p",
"depends": ["BiocGenerics", "BiocSingular", "DelayedArray", "HDF5Array", "Matrix", "NMF", "RColorBrewer", "Rcpp", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "ape", "cluster", "edgeR", "kernlab", "limma", "locfdr", "matrixStats", "mbkmeans", "phylobase", "pracma", "scales", "stringr", "zinbwave"]
},
"clusterProfiler": {
"name": "clusterProfiler",
"version": "4.18.0",
"sha256": "1sqxizm5sbjhjyg5kxbb1k1qv1pmldkfa232h04w4z1k4a1isn0l",
"depends": ["AnnotationDbi", "DOSE", "GOSemSim", "GO_db", "dplyr", "enrichplot", "gson", "httr", "igraph", "magrittr", "plyr", "qvalue", "rlang", "tidyr", "yulab_utils"]
},
"clusterSeq": {
"name": "clusterSeq",
"version": "1.34.0",
"sha256": "1ny2ypmqgwqwqa857bdh19ymizcy6ilk2fzsdbvqm7rh0zwkqnij",
"depends": ["BiocGenerics", "BiocParallel", "baySeq"]
},
"clusterStab": {
"name": "clusterStab",
"version": "1.82.0",
"sha256": "128ifhm27d0rrj7m6i0ycflv044c9inha3kic4gvyn5ggkmy4fmv",
"depends": ["Biobase"]
},
"clustifyr": {
"name": "clustifyr",
"version": "1.22.0",
"sha256": "0i8ck3wf61d92fgxg1b3p27xklilibkqz3qavdnmfks2xwzfbs5w",
"depends": ["Matrix", "S4Vectors", "SeuratObject", "SingleCellExperiment", "SummarizedExperiment", "cowplot", "dplyr", "entropy", "fgsea", "ggplot2", "httr", "matrixStats", "proxy", "rlang", "scales", "stringr", "tibble", "tidyr"]
},
"cmapR": {
"name": "cmapR",
"version": "1.22.0",
"sha256": "1c8mhspf33byz9mj3zmgf9k2d02g2dv41ick4wka4ghm1x1iygnc",
"depends": ["SummarizedExperiment", "data_table", "flowCore", "matrixStats", "rhdf5"]
},
"cn_farms": {
"name": "cn.farms",
"version": "1.58.0",
"sha256": "1jm7zwkdhcbsr1i5zc1s35ki0ri3y5mqnpng07h1jvqg9kd15w5f",
"depends": ["Biobase", "DBI", "DNAcopy", "affxparser", "ff", "lattice", "oligo", "oligoClasses", "preprocessCore", "snow"]
},
"cn_mops": {
"name": "cn.mops",
"version": "1.56.0",
"sha256": "14dihwcwc02p8kcxwisnpq5sv7km5bpyb68v1pnac0pgjxlccn5q",
"depends": ["Biobase", "BiocGenerics", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo"]
},
"cnvGSA": {
"name": "cnvGSA",
"version": "1.54.0",
"sha256": "0dmrr4hy1h1v7fa4v2y4wg1i2cf3jq0wldybb0jy0p8q8059gwg8",
"depends": ["GenomicRanges", "brglm", "doParallel", "foreach", "splitstackshape"]
},
"coGPS": {
"name": "coGPS",
"version": "1.54.0",
"sha256": "0d8611n0ya3b7dnbilakkjjw07mnm0f5vbr58q1kbmvx9v4i0cfz",
"depends": []
},
"coMethDMR": {
"name": "coMethDMR",
"version": "1.14.0",
"sha256": "1k0dvlxafam228fbmcs29r2x5zflwwd2ws8q3kbfmjgy2n334159",
"depends": ["AnnotationHub", "BiocParallel", "ExperimentHub", "GenomicRanges", "IRanges", "bumphunter", "lmerTest"]
},
"coRdon": {
"name": "coRdon",
"version": "1.28.0",
"sha256": "0vkg3pch29mkab684mmbbrvpk2w1lkj4kfda75i50wy10x706cnv",
"depends": ["Biobase", "Biostrings", "data_table", "dplyr", "ggplot2", "purrr", "stringr"]
},
"codelink": {
"name": "codelink",
"version": "1.78.0",
"sha256": "01mkh2mvgaiq760ga379m9s0wapv0g8bkmjm0c1wxc4bay6hgbph",
"depends": ["Biobase", "BiocGenerics", "annotate", "limma"]
},
"cogena": {
"name": "cogena",
"version": "1.44.0",
"sha256": "1klqysglaz37lyy3aj99fpddw9nz9k06473qg6lhvjrpfgbr1chf",
"depends": ["Biobase", "amap", "apcluster", "biwt", "class", "cluster", "corrplot", "devtools", "doParallel", "dplyr", "fastcluster", "foreach", "ggplot2", "gplots", "kohonen", "mclust", "reshape2", "stringr", "tibble", "tidyr"]
},
"cogeqc": {
"name": "cogeqc",
"version": "1.14.0",
"sha256": "19fyg5na5g30vp62ki8hxb0pg24k6dzd08xan7f7biqh0ygc2ig5",
"depends": ["Biostrings", "ggbeeswarm", "ggplot2", "ggtree", "igraph", "jsonlite", "patchwork", "reshape2", "rlang", "scales"]
},
"cola": {
"name": "cola",
"version": "2.16.0",
"sha256": "1h6w44nbach8wvnd3qjs107fmcqn3wzpqv587c651xqcjrq6d1w7",
"depends": ["BiocGenerics", "ComplexHeatmap", "GetoptLong", "GlobalOptions", "RColorBrewer", "Rcpp", "brew", "circlize", "clue", "cluster", "crayon", "digest", "doParallel", "doRNG", "eulerr", "foreach", "httr", "impute", "irlba", "knitr", "markdown", "matrixStats", "mclust", "microbenchmark", "png", "skmeans", "xml2"]
},
"combi": {
"name": "combi",
"version": "1.22.0",
"sha256": "1miy20axfip09v4ma5v70knv1h118w0rmdssqbzam2dxbdilipcp",
"depends": ["BB", "Biobase", "DBI", "Matrix", "SummarizedExperiment", "alabama", "cobs", "ggplot2", "limma", "nleqslv", "phyloseq", "reshape2", "tensor", "vegan"]
},
"compEpiTools": {
"name": "compEpiTools",
"version": "1.44.0",
"sha256": "0j35bq78pz79413149j0j4g4mz05kmyzcbpg6wgq04c9xyjnkyzv",
"depends": ["AnnotationDbi", "BiocGenerics", "Biostrings", "GO_db", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "XVector", "gplots", "methylPipe", "topGO"]
},
"compSPOT": {
"name": "compSPOT",
"version": "1.8.0",
"sha256": "1ab63jhw8la182irpygpzdasn71d24y1bwabn834h3sw1h0jnxg2",
"depends": ["data_table", "ggplot2", "ggpubr", "gridExtra", "magrittr", "plotly"]
},
"compcodeR": {
"name": "compcodeR",
"version": "1.46.0",
"sha256": "16i81f8i9g1f6cwk96idzr377p45s23s1d018x8aiacs92c1kfxv",
"depends": ["KernSmooth", "MASS", "ROCR", "ape", "caTools", "edgeR", "ggplot2", "gplots", "gtools", "knitr", "lattice", "limma", "markdown", "matrixStats", "modeest", "phylolm", "rmarkdown", "shiny", "shinydashboard", "sm", "stringr", "vioplot"]
},
"concordexR": {
"name": "concordexR",
"version": "1.10.0",
"sha256": "03xrjkgsqcd9p7029vlif5bgcbpf5yzf03dg3cni8rf9a4sgrh9y",
"depends": ["BiocGenerics", "BiocNeighbors", "BiocParallel", "DelayedArray", "Matrix", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "bluster", "cli", "purrr", "rlang", "sparseMatrixStats"]
},
"condiments": {
"name": "condiments",
"version": "1.18.0",
"sha256": "1rld3jllr8iax3ivb20cg5syzvci75g53r8g86ac76r95sqbsdi4",
"depends": ["BiocParallel", "Ecume", "RANN", "SingleCellExperiment", "SummarizedExperiment", "TrajectoryUtils", "distinct", "dplyr", "igraph", "magrittr", "matrixStats", "mgcv", "pbapply", "slingshot"]
},
"consICA": {
"name": "consICA",
"version": "2.8.0",
"sha256": "0l54a4iyyykwy1zg8mjk87swjbsfjcs4jbyqicpci377wa2fcpvj",
"depends": ["BiocParallel", "GO_db", "Rfast", "SummarizedExperiment", "fastICA", "ggplot2", "graph", "org_Hs_eg_db", "pheatmap", "sm", "survival", "topGO"]
},
"consensus": {
"name": "consensus",
"version": "1.28.0",
"sha256": "14wzl0vpgxf34ab6f3ymrhy19rvn9s54zx9d4fqs4wsmzgw6r4dl",
"depends": ["RColorBrewer", "gplots", "matrixStats"]
},
"consensusDE": {
"name": "consensusDE",
"version": "1.28.0",
"sha256": "1rflkdj8kkb0vhhhlyfirpvkqanbxgfjqwi7diyr35rhkfynra4y",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "BiocParallel", "Biostrings", "DESeq2", "EDASeq", "EnsDb_Hsapiens_v86", "GenomicAlignments", "GenomicFeatures", "RColorBrewer", "RUVSeq", "Rsamtools", "S4Vectors", "SummarizedExperiment", "TxDb_Dmelanogaster_UCSC_dm3_ensGene", "airway", "data_table", "dendextend", "edgeR", "ensembldb", "limma", "org_Hs_eg_db", "pcaMethods"]
},
"consensusOV": {
"name": "consensusOV",
"version": "1.32.0",
"sha256": "08k9x2alip4yz8243fnakjrp7awv68d6wa4rlbnwbnsp3dx3pdqy",
"depends": ["Biobase", "BiocParallel", "GSVA", "gdata", "genefu", "limma", "matrixStats", "randomForest"]
},
"consensusSeekeR": {
"name": "consensusSeekeR",
"version": "1.38.0",
"sha256": "04s65v7cg7mzyarym98b2qn5gm61z96yq538cxvglc6bsgn0kglq",
"depends": ["BiocGenerics", "BiocParallel", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "rtracklayer", "stringr"]
},
"conumee": {
"name": "conumee",
"version": "1.44.0",
"sha256": "1v3xxc4z8d98gyhy4q3mbdi40mjw8k44r1328mqpikgyrn2l2rp5",
"depends": ["DNAcopy", "GenomicRanges", "IRanges", "IlluminaHumanMethylation450kanno_ilmn12_hg19", "IlluminaHumanMethylation450kmanifest", "IlluminaHumanMethylationEPICanno_ilm10b2_hg19", "IlluminaHumanMethylationEPICmanifest", "Seqinfo", "minfi", "rtracklayer"]
},
"convert": {
"name": "convert",
"version": "1.86.0",
"sha256": "0y3932nyp4fdp4yjnzskg1cg4rsg0yc36cl5qqrj2svxh5d4s7b8",
"depends": ["Biobase", "limma", "marray"]
},
"copa": {
"name": "copa",
"version": "1.78.0",
"sha256": "08r4yx0jqlsm4h6c2aafdqlrm4pa4zyyrq8n5ygkf5j738sis7k1",
"depends": ["Biobase"]
},
"corral": {
"name": "corral",
"version": "1.20.0",
"sha256": "1njbbbnzlpp4m30ls2b6ff9fdwacjdnplh39115ix2lxnbcyg7np",
"depends": ["Matrix", "MultiAssayExperiment", "SingleCellExperiment", "SummarizedExperiment", "ggplot2", "ggthemes", "gridExtra", "irlba", "pals", "reshape2", "transport"]
},
"coseq": {
"name": "coseq",
"version": "1.34.0",
"sha256": "1mfndl9gzfpf8gv9qszaa8fy2ma9nmc1d1lb66j9y8v8xj9yk9vw",
"depends": ["BiocParallel", "DESeq2", "HTSCluster", "HTSFilter", "Rmixmod", "S4Vectors", "SummarizedExperiment", "capushe", "compositions", "corrplot", "e1071", "edgeR", "ggplot2", "mvtnorm", "scales"]
},
"cosmiq": {
"name": "cosmiq",
"version": "1.44.0",
"sha256": "1a70a6kl5k0a6l8ihhlyvjscr8srvgy2qljf8h8j5cm8pgiljyzl",
"depends": ["MassSpecWavelet", "Rcpp", "faahKO", "pracma", "xcms"]
},
"cosmosR": {
"name": "cosmosR",
"version": "1.18.0",
"sha256": "0l816srg6rgmb53ws45vwv3w8bvlyh8qcyz1q2drz9fg0w93645b",
"depends": ["CARNIVAL", "GSEABase", "decoupleR", "dorothea", "dplyr", "igraph", "progress", "purrr", "rlang", "stringr", "visNetwork"]
},
"countsimQC": {
"name": "countsimQC",
"version": "1.28.0",
"sha256": "0kbcl53mi9ch3d336xccw500bvghjy6lify8jpj7hmnx7bxhzzlq",
"depends": ["DESeq2", "DT", "GenomeInfoDbData", "SummarizedExperiment", "caTools", "dplyr", "edgeR", "genefilter", "ggplot2", "ragg", "randtests", "rmarkdown", "tidyr"]
},
"covEB": {
"name": "covEB",
"version": "1.36.0",
"sha256": "05glwld2sl0fcd1xgq20yc7pjs91i814ca5h2y2mjj55160l44ks",
"depends": ["Biobase", "LaplacesDemon", "Matrix", "gsl", "igraph", "mvtnorm"]
},
"covRNA": {
"name": "covRNA",
"version": "1.36.0",
"sha256": "1marp993hl0in7n68awlynpyczzbnwy6rgvilf5c52bqrp6hz40w",
"depends": ["Biobase", "ade4", "genefilter"]
},
"cpvSNP": {
"name": "cpvSNP",
"version": "1.42.0",
"sha256": "14vb6rj7z633dgkdlacv5zjmqdfphi4lhs2gfl41x34ppz8z8fy3",
"depends": ["BiocParallel", "GSEABase", "GenomicFeatures", "corpcor", "ggplot2", "plyr"]
},
"cqn": {
"name": "cqn",
"version": "1.56.0",
"sha256": "0aj0g8j4qgfvf421iyxq2w44jp3ryl3pcazrq1qslf48rgndf3kd",
"depends": ["mclust", "nor1mix", "quantreg"]
},
"crisprBase": {
"name": "crisprBase",
"version": "1.14.0",
"sha256": "17rimskjajjh55pybyk145ag52nqnpxfm1k88xm631j0r4bg51vf",
"depends": ["BiocGenerics", "Biostrings", "GenomicRanges", "IRanges", "S4Vectors", "stringr"]
},
"crisprBowtie": {
"name": "crisprBowtie",
"version": "1.14.0",
"sha256": "1d1spfnfr3z3pqwq077j6pjind9j6vi82y2cmla0llfidb2gychv",
"depends": ["BSgenome", "BiocGenerics", "Biostrings", "GenomicRanges", "IRanges", "Rbowtie", "Seqinfo", "crisprBase", "readr", "stringr"]
},
"crisprBwa": {
"name": "crisprBwa",
"version": "1.14.0",
"sha256": "0mh9vixbmny6ifgc20381y7hajf1cda3scyvc0sbij0f70b83hcr",
"depends": ["BSgenome", "BiocGenerics", "Rbwa", "Seqinfo", "crisprBase", "readr", "stringr"]
},
"crisprDesign": {
"name": "crisprDesign",
"version": "1.12.0",
"sha256": "1cgqd6maqk2ij852n4ajpmc0kz36ap1614yi0q1x3rnyp427p2mp",
"depends": ["AnnotationDbi", "BSgenome", "BiocGenerics", "Biostrings", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "Matrix", "MatrixGenerics", "S4Vectors", "Seqinfo", "VariantAnnotation", "crisprBase", "crisprBowtie", "crisprScore", "rtracklayer", "txdbmaker"]
},
"crisprScore": {
"name": "crisprScore",
"version": "1.14.0",
"sha256": "1vzdiz0gz5fbrn0sak3gylaxgxavyb1qcx7ldg02mkvhd2mlbcx8",
"depends": ["BiocGenerics", "Biostrings", "IRanges", "XVector", "basilisk", "crisprScoreData", "randomForest", "reticulate", "stringr"]
},
"crisprShiny": {
"name": "crisprShiny",
"version": "1.6.0",
"sha256": "0vvdmfzvxva41fln61nd2l3chf9nvg9rcgrxwd8zgpm9gh84f9sb",
"depends": ["BSgenome", "BiocGenerics", "Biostrings", "DT", "S4Vectors", "Seqinfo", "crisprBase", "crisprDesign", "crisprScore", "crisprViz", "htmlwidgets", "pwalign", "shiny", "shinyBS", "shinyjs", "waiter"]
},
"crisprVerse": {
"name": "crisprVerse",
"version": "1.12.0",
"sha256": "0z3d1sqhp15y0k1i0pkbzil60gn6hfsgm91yj6kci79axslia40l",
"depends": ["BiocManager", "cli", "crisprBase", "crisprBowtie", "crisprDesign", "crisprScore", "crisprScoreData", "crisprViz", "rlang"]
},
"crisprViz": {
"name": "crisprViz",
"version": "1.12.0",
"sha256": "1h3qnndqj1561fhayzmg734ixflwcgwrxv0a2k7zqwbgmbpq73qy",
"depends": ["BSgenome", "BiocGenerics", "Biostrings", "GenomicFeatures", "GenomicRanges", "Gviz", "IRanges", "S4Vectors", "Seqinfo", "crisprBase", "crisprDesign", "txdbmaker"]
},
"crlmm": {
"name": "crlmm",
"version": "1.68.0",
"sha256": "0fpyn0q596k7yb03y10dcrrbn8narngca97sj1dldij0l07100mw",
"depends": ["Biobase", "BiocGenerics", "RcppEigen", "VGAM", "affyio", "beanplot", "ellipse", "ff", "foreach", "illuminaio", "lattice", "limma", "matrixStats", "mvtnorm", "oligoClasses", "preprocessCore"]
},
"crumblr": {
"name": "crumblr",
"version": "1.2.0",
"sha256": "0fcwl1cql812z22h4qmr1piyaa10k38zgyba18nz9xf9cin385c2",
"depends": ["MASS", "Rdpack", "Rfast", "SingleCellExperiment", "dplyr", "ggplot2", "ggtree", "tidytree", "variancePartition", "viridis"]
},
"crupR": {
"name": "crupR",
"version": "1.2.0",
"sha256": "1ffvljw9q9m5405k9r9y409cnl64j897kwz3qmp2hcspmlq9mrs7",
"depends": ["BiocParallel", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "TxDb_Hsapiens_UCSC_hg19_knownGene", "TxDb_Hsapiens_UCSC_hg38_knownGene", "TxDb_Mmusculus_UCSC_mm10_knownGene", "TxDb_Mmusculus_UCSC_mm9_knownGene", "bamsignals", "dplyr", "fs", "ggplot2", "magrittr", "matrixStats", "preprocessCore", "randomForest", "reshape2", "rtracklayer"]
},
"csaw": {
"name": "csaw",
"version": "1.44.0",
"sha256": "10pk3lmjjmdyfp10fcnjbgfcxzlkd1fbjvh0h53ycq37p6sa49qb",
"depends": ["BiocGenerics", "BiocParallel", "GenomicRanges", "IRanges", "Matrix", "Rcpp", "Rhtslib", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "edgeR", "limma", "metapod"]
},
"csdR": {
"name": "csdR",
"version": "1.16.0",
"sha256": "08ryx2jczvn7x9vl965adqpkhpbhbbc3rhj30mhrpgl45jbn7bka",
"depends": ["Rcpp", "RhpcBLASctl", "WGCNA", "glue", "matrixStats"]
},
"ctc": {
"name": "ctc",
"version": "1.84.0",
"sha256": "0h5lnb3bb88f6cbw38jn9rp6mynx8x7jzini2i9b8jw9myc2g6sx",
"depends": ["amap"]
},
"ctsGE": {
"name": "ctsGE",
"version": "1.36.0",
"sha256": "19qw1ww4nxplqnjyca8lcx1mqzfx9j664rnw6pprlpfsc5c5kg4c",
"depends": ["ccaPP", "ggplot2", "limma", "reshape2", "shiny", "stringr"]
},
"customCMPdb": {
"name": "customCMPdb",
"version": "1.20.0",
"sha256": "19s36a2j7gr7563rgblgwmdym28har666m28ci377bm6hb25aky8",
"depends": ["AnnotationHub", "BiocFileCache", "ChemmineR", "RSQLite", "XML", "rappdirs"]
},
"cyanoFilter": {
"name": "cyanoFilter",
"version": "1.18.0",
"sha256": "1m1lgg7gydzhk01vp0ddgsnn5rkdc47f0ippy5shh1l9mfj8fpah",
"depends": ["Biobase", "GGally", "cytometree", "flowClust", "flowCore", "flowDensity", "ggplot2", "mrfDepth"]
},
"cycle": {
"name": "cycle",
"version": "1.64.0",
"sha256": "1kaz4azy4gns1sww7n4wxa1kmlj8crk01lgvb15rlkcg38if9xma",
"depends": ["Biobase", "Mfuzz"]
},
"cydar": {
"name": "cydar",
"version": "1.34.0",
"sha256": "1wv5y5v4x3r84h1sh43zl841wxqnv9ffspr8nm6lypncpg99qdqw",
"depends": ["Biobase", "BiocGenerics", "BiocNeighbors", "BiocParallel", "Rcpp", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "flowCore", "shiny", "viridis"]
},
"cypress": {
"name": "cypress",
"version": "1.6.0",
"sha256": "1f1kh5789rmpz3v35ldbgmjc39r5swlfhfciir4qcmkpi7gk23q4",
"depends": ["BiocParallel", "DESeq2", "MASS", "PROPER", "RColorBrewer", "SummarizedExperiment", "TCA", "TOAST", "abind", "checkmate", "dplyr", "e1071", "edgeR", "mvtnorm", "preprocessCore", "rlang", "sirt", "tibble"]
},
"cytoKernel": {
"name": "cytoKernel",
"version": "1.16.0",
"sha256": "1bazyy554vk2lwdvs612g2qjxgbnqgv0pyj0w1jyxlvh992x91nh",
"depends": ["BiocParallel", "ComplexHeatmap", "Rcpp", "S4Vectors", "SummarizedExperiment", "ashr", "circlize", "data_table", "dplyr", "magrittr", "rlang"]
},
"cytoMEM": {
"name": "cytoMEM",
"version": "1.14.0",
"sha256": "0h122sdnv5ivmb7awsz20cqi6k1wgb9v84mpd938igacnrv6d95a",
"depends": ["flowCore", "gplots", "matrixStats"]
},
"cytolib": {
"name": "cytolib",
"version": "2.22.0",
"sha256": "0qfh5srgdz01n66p9midq0051hl83dhzrkm0mvqlzs7ccm9xvb70",
"depends": ["BH", "RProtoBufLib", "Rhdf5lib"]
},
"cytomapper": {
"name": "cytomapper",
"version": "1.22.0",
"sha256": "1r68fbhwgnhplp3mmkcnga4kxwx8yj9c7vldwzxacpbihw4hxi92",
"depends": ["BiocParallel", "DelayedArray", "EBImage", "HDF5Array", "RColorBrewer", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "ggbeeswarm", "ggplot2", "matrixStats", "nnls", "raster", "rhdf5", "shiny", "shinydashboard", "svgPanZoom", "svglite", "viridis"]
},
"cytoviewer": {
"name": "cytoviewer",
"version": "1.10.0",
"sha256": "0lx73ldfyy2s3dkh13ph8pqs003fg07yjjfqn1m3l5z9hxgcnzmk",
"depends": ["EBImage", "RColorBrewer", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "archive", "colourpicker", "cytomapper", "shiny", "shinycssloaders", "shinydashboard", "svgPanZoom", "svglite", "viridis"]
},
"dStruct": {
"name": "dStruct",
"version": "1.16.0",
"sha256": "1mifjcjgihr4gsshx1197x5wq87xyqwl38dmkb2pqppvf3ma2ppm",
"depends": ["IRanges", "S4Vectors", "ggplot2", "purrr", "reshape2", "rlang", "zoo"]
},
"daMA": {
"name": "daMA",
"version": "1.82.0",
"sha256": "1klyw8f3b15160q9qdaqd6dp50l6xvwp1qgyphamwj6wh0y64xqg",
"depends": ["MASS"]
},
"dada2": {
"name": "dada2",
"version": "1.38.0",
"sha256": "0dcb37hv4wa6qz0f0xqmiw7n938lkm4dp9n9ardhwf633qcsn00d",
"depends": ["BiocGenerics", "Biostrings", "IRanges", "Rcpp", "RcppParallel", "ShortRead", "XVector", "ggplot2", "reshape2"]
},
"dagLogo": {
"name": "dagLogo",
"version": "1.48.0",
"sha256": "0cb5yqfjgy3qxnqbppavfifgmk2gys8yww200kqpgkkwn4wdw81k",
"depends": ["BiocGenerics", "Biostrings", "UniProt_ws", "biomaRt", "httr", "motifStack", "pheatmap"]
},
"dar": {
"name": "dar",
"version": "1.6.0",
"sha256": "0dxpd19pqkqxpb6r9fzb068a4saspzasx5i171inib4jq7r6yicx",
"depends": ["ComplexHeatmap", "UpSetR", "cli", "crayon", "dplyr", "generics", "ggplot2", "glue", "gplots", "heatmaply", "magrittr", "mia", "phyloseq", "purrr", "readr", "rlang", "scales", "stringr", "tibble", "tidyr", "waldo"]
},
"dcGSA": {
"name": "dcGSA",
"version": "1.38.0",
"sha256": "1dfnchgyiw7g424s24jshzcz56whdpxbzsapyw4bna0ldhd0m4mp",
"depends": ["BiocParallel", "Matrix"]
},
"dcanr": {
"name": "dcanr",
"version": "1.26.0",
"sha256": "0ga220j0na7biwrwxhzdjw0qv8624lcw05c5kagjd889rf27sizj",
"depends": ["Matrix", "RColorBrewer", "circlize", "doRNG", "foreach", "igraph", "plyr", "reshape2", "stringr"]
},
"ddCt": {
"name": "ddCt",
"version": "1.66.0",
"sha256": "0xl3034xixqms5q66glbc3c697fff1dd5qyn57pm4jbyn6gfrsrw",
"depends": ["Biobase", "BiocGenerics", "RColorBrewer", "lattice", "xtable"]
},
"ddPCRclust": {
"name": "ddPCRclust",
"version": "1.30.0",
"sha256": "1vj6a3wd4r0w606cm6pkdxgmmq0cmibly1xs9fdnli8z6sxpnqn1",
"depends": ["R_utils", "SamSPECTRAL", "clue", "flowCore", "flowDensity", "flowPeaks", "ggplot2", "openxlsx", "plotrix"]
},
"dearseq": {
"name": "dearseq",
"version": "1.22.0",
"sha256": "04a4ifz73bz0ivqirwzcr1aqfwbm7k63d9qic26n418xrdk9liwz",
"depends": ["CompQuadForm", "KernSmooth", "dplyr", "ggplot2", "magrittr", "matrixStats", "patchwork", "pbapply", "reshape2", "rlang", "scattermore", "statmod", "survey", "tibble", "viridisLite"]
},
"debrowser": {
"name": "debrowser",
"version": "1.38.0",
"sha256": "0d90w8v43psm2z47i1np20jvy6l331n18wyzngqgk94g7qcacw98",
"depends": ["AnnotationDbi", "DESeq2", "DOSE", "DT", "GenomicRanges", "Harman", "IRanges", "RColorBrewer", "RCurl", "S4Vectors", "SummarizedExperiment", "annotate", "apeglm", "ashr", "clusterProfiler", "colourpicker", "edgeR", "enrichplot", "ggplot2", "gplots", "heatmaply", "igraph", "jsonlite", "limma", "org_Hs_eg_db", "org_Mm_eg_db", "pathview", "plotly", "reshape2", "shiny", "shinyBS", "shinydashboard", "shinyjs", "stringi", "sva"]
},
"decompTumor2Sig": {
"name": "decompTumor2Sig",
"version": "2.26.0",
"sha256": "1qrgc6s3fidcjg1j16ndg9l3awh0ga2v3j84b6yg8d52whf9xs0a",
"depends": ["BSgenome_Hsapiens_UCSC_hg19", "BiocGenerics", "Biostrings", "GenomicFeatures", "GenomicRanges", "Matrix", "S4Vectors", "Seqinfo", "SummarizedExperiment", "TxDb_Hsapiens_UCSC_hg19_knownGene", "VariantAnnotation", "data_table", "ggplot2", "ggseqlogo", "gridExtra", "plyr", "quadprog", "readxl"]
},
"decontX": {
"name": "decontX",
"version": "1.8.0",
"sha256": "00w0xd9i6lhb84q7mjjy1wgrs4sb20hpjxmkfkymk2apf5azf9p7",
"depends": ["BH", "DelayedArray", "MCMCprecision", "Matrix", "Rcpp", "RcppEigen", "RcppParallel", "S4Vectors", "Seurat", "SingleCellExperiment", "StanHeaders", "SummarizedExperiment", "celda", "dbscan", "ggplot2", "patchwork", "plyr", "reshape2", "rstan", "rstantools", "scater", "withr"]
},
"decontam": {
"name": "decontam",
"version": "1.30.0",
"sha256": "0vf4rkw66qxg8rcpicr0pjpgrg377nd0ykizzx5hym9vj84jhcwl",
"depends": ["ggplot2", "reshape2"]
},
"deconvR": {
"name": "deconvR",
"version": "1.16.0",
"sha256": "0nbkic26yw1gwcn2ha2jb4hjinc0id0gjhwl59lf38aiy9ckssya",
"depends": ["BiocGenerics", "GenomicRanges", "IRanges", "MASS", "S4Vectors", "assertthat", "data_table", "dplyr", "e1071", "foreach", "magrittr", "matrixStats", "methylKit", "minfi", "nnls", "quadprog", "rsq", "tidyr"]
},
"decoupleR": {
"name": "decoupleR",
"version": "2.16.0",
"sha256": "1wg6nkjzj30lddhz95d1mlmdlr3fvpwkamzyil23wzm2yz6yw4i4",
"depends": ["BiocParallel", "Matrix", "broom", "dplyr", "magrittr", "parallelly", "purrr", "rlang", "stringr", "tibble", "tidyr", "tidyselect", "withr"]
},
"deepSNV": {
"name": "deepSNV",
"version": "1.56.0",
"sha256": "0dl4d5w2s25j8gfrrbc6gm2jz8jss89dcs6k0w2lwfh88m6h6lr4",
"depends": ["Biostrings", "GenomicRanges", "IRanges", "Rhtslib", "SummarizedExperiment", "VGAM", "VariantAnnotation"]
},
"deltaCaptureC": {
"name": "deltaCaptureC",
"version": "1.24.0",
"sha256": "06d8ml983s4l033vwnjh5sj8hz283zfrdkpfqj0z8nwm35vnq39j",
"depends": ["DESeq2", "GenomicRanges", "IRanges", "SummarizedExperiment", "ggplot2", "tictoc"]
},
"deltaGseg": {
"name": "deltaGseg",
"version": "1.50.0",
"sha256": "0y7i05l2lbv2dnib5d069zrdhmr432ig4fj72p4w72mzizfmm7p9",
"depends": ["changepoint", "fBasics", "ggplot2", "pvclust", "reshape", "scales", "tseries", "wavethresh"]
},
"demuxSNP": {
"name": "demuxSNP",
"version": "1.8.0",
"sha256": "1jshg2rqmlw59cdha9k4zzrhp2z4kl8hqgb00h31khi296nrbv79",
"depends": ["BiocGenerics", "IRanges", "KernelKnn", "Matrix", "MatrixGenerics", "Seqinfo", "SingleCellExperiment", "SummarizedExperiment", "VariantAnnotation", "class", "demuxmix", "dplyr", "ensembldb"]
},
"demuxmix": {
"name": "demuxmix",
"version": "1.12.0",
"sha256": "0p5l2ig6kwn87ksckrxf10f8cm0x7c6a07hpsn79a50jmidch902",
"depends": ["MASS", "Matrix", "ggplot2", "gridExtra"]
},
"densvis": {
"name": "densvis",
"version": "1.20.0",
"sha256": "1pp5ivc9rb40c66p74ypn6w2jx0maj64205rbb5k2xf70592i2p4",
"depends": ["Rcpp", "Rtsne", "assertthat", "basilisk", "irlba", "reticulate"]
},
"derfinder": {
"name": "derfinder",
"version": "1.44.0",
"sha256": "19r6bzx6lz03pvzjvvy0g6pbf48vzp229lbd2lpgp3z6x1ncrrz5",
"depends": ["AnnotationDbi", "BiocGenerics", "BiocParallel", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicFiles", "GenomicRanges", "Hmisc", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "bumphunter", "derfinderHelper", "qvalue", "rtracklayer"]
},
"derfinderHelper": {
"name": "derfinderHelper",
"version": "1.44.0",
"sha256": "0ppgqsrrkizxzkq0bycx05wdmf3j6l3hmyp8x4is0k36s3x5x7kn",
"depends": ["IRanges", "Matrix", "S4Vectors"]
},
"derfinderPlot": {
"name": "derfinderPlot",
"version": "1.44.0",
"sha256": "1kh8snbldzxvs9n2i35dd1361hxnv8rwm0ll36kjywldlaa27bkj",
"depends": ["GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "RColorBrewer", "S4Vectors", "Seqinfo", "derfinder", "ggbio", "ggplot2", "limma", "plyr", "reshape2", "scales"]
},
"diffGeneAnalysis": {
"name": "diffGeneAnalysis",
"version": "1.92.0",
"sha256": "1h9qsnj69xpzcrsx9pkf8bxinhpc08zmb5ykx7v339sghkvnqzn4",
"depends": ["minpack_lm"]
},
"diffHic": {
"name": "diffHic",
"version": "1.42.0",
"sha256": "08bxncp88k15sj0xfhw9fsv9kk3g4f56qqp6ybrqq1ys64b56a3z",
"depends": ["BSgenome", "BiocGenerics", "Biostrings", "GenomeInfoDb", "GenomicRanges", "IRanges", "InteractionSet", "Rcpp", "Rhtslib", "Rsamtools", "S4Vectors", "SummarizedExperiment", "csaw", "edgeR", "limma", "locfit", "rhdf5", "rtracklayer"]
},
"diffUTR": {
"name": "diffUTR",
"version": "1.18.0",
"sha256": "00dprqbngf41n5yncaxn0kkfq0dxgz9df6c8p9064k3z35bsn5si",
"depends": ["ComplexHeatmap", "DEXSeq", "GenomeInfoDb", "GenomicRanges", "IRanges", "Rsubread", "S4Vectors", "SummarizedExperiment", "dplyr", "edgeR", "ensembldb", "ggplot2", "ggrepel", "limma", "matrixStats", "rtracklayer", "stringi", "viridisLite"]
},
"diffcoexp": {
"name": "diffcoexp",
"version": "1.30.0",
"sha256": "010hjbsk0y2gdk543jsjdykyd01141fmqn3pl57adhsgxmxcr8pp",
"depends": ["BiocGenerics", "DiffCorr", "SummarizedExperiment", "WGCNA", "igraph", "psych"]
},
"diffcyt": {
"name": "diffcyt",
"version": "1.30.0",
"sha256": "13rz4dp034pm7273z1ngrl58fqlaziv8qn501jhg3hwkjclbfzhv",
"depends": ["ComplexHeatmap", "FlowSOM", "S4Vectors", "SummarizedExperiment", "circlize", "dplyr", "edgeR", "flowCore", "limma", "lme4", "magrittr", "multcomp", "reshape2", "tidyr"]
},
"diffuStats": {
"name": "diffuStats",
"version": "1.30.0",
"sha256": "1hq9j64lrk6f0xskz8jn1s5ddkr947y6clj94ylkan0i68gbbpzn",
"depends": ["MASS", "Matrix", "Rcpp", "RcppArmadillo", "RcppParallel", "checkmate", "expm", "igraph", "plyr", "precrec"]
},
"diggit": {
"name": "diggit",
"version": "1.42.0",
"sha256": "1xi6rczrvky4s3xdb8dngadrm2iz5xj3mli869b0bn0ggsw735z0",
"depends": ["Biobase", "ks", "viper"]
},
"dinoR": {
"name": "dinoR",
"version": "1.6.0",
"sha256": "052lxngxi2pkxamppvafmczdxgviz7la2mbkf2jz0fa3f0di3czv",
"depends": ["BiocGenerics", "ComplexHeatmap", "GenomicRanges", "Matrix", "SummarizedExperiment", "circlize", "cowplot", "dplyr", "edgeR", "ggplot2", "rlang", "stringr", "tibble", "tidyr", "tidyselect"]
},
"dir_expiry": {
"name": "dir.expiry",
"version": "1.18.0",
"sha256": "1hgd5raxj732z0y5irb7vszcxf8xfha23rs3fi1jwjc84dxkghvi",
"depends": ["filelock"]
},
"discordant": {
"name": "discordant",
"version": "1.34.0",
"sha256": "07x2ck5vnb1nyk0lz1ffpgkfdas3x4p3fpw0zb7msvvpw9ny34jv",
"depends": ["Biobase", "MASS", "Rcpp", "biwt", "dplyr", "gtools"]
},
"distinct": {
"name": "distinct",
"version": "1.22.0",
"sha256": "0cpdszswk06pc0cyb51lmi4xrdcjxzadzkvj34y62i3fghfzhzxa",
"depends": ["Matrix", "Rcpp", "RcppArmadillo", "SingleCellExperiment", "SummarizedExperiment", "doParallel", "doRNG", "foreach", "ggplot2", "limma", "scater"]
},
"dittoSeq": {
"name": "dittoSeq",
"version": "1.22.0",
"sha256": "0fb5c78r3qi8px398fcwqkisxdx5cz6afz1plrgr3z1fdcxnspqz",
"depends": ["S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "colorspace", "cowplot", "ggplot2", "ggrepel", "ggridges", "gridExtra", "pheatmap", "reshape2"]
},
"divergence": {
"name": "divergence",
"version": "1.26.0",
"sha256": "0xahfjc5pclrq4m41z56ysyv83n8smw2jfv53312akcy8i16wbi7",
"depends": ["SummarizedExperiment"]
},
"dks": {
"name": "dks",
"version": "1.56.0",
"sha256": "1zhzcq6jgcnl8di11804d6b3z5jb077cg1p3rhilpzlqsww02ym8",
"depends": ["cubature"]
},
"dmGsea": {
"name": "dmGsea",
"version": "1.0.0",
"sha256": "1cykkajxdsb7ama3afffc9fjhfvfci1xs7j6849l5c4lqd41v3kw",
"depends": ["AnnotationDbi", "BiasedUrn", "Matrix", "Seqinfo", "SummarizedExperiment", "dqrng", "poolr"]
},
"dmrseq": {
"name": "dmrseq",
"version": "1.30.0",
"sha256": "03a5my4a8dja3lnrdzng7554rfkymcvdgixibhx57hqkwwvj4qcj",
"depends": ["AnnotationHub", "BiocParallel", "DelayedMatrixStats", "GenomicRanges", "IRanges", "RColorBrewer", "S4Vectors", "Seqinfo", "annotatr", "bsseq", "bumphunter", "ggplot2", "locfit", "matrixStats", "nlme", "outliers", "rtracklayer"]
},
"dominoSignal": {
"name": "dominoSignal",
"version": "1.4.0",
"sha256": "15ff1p8p5v4gqkv1spnvkx62x5ddbvmd9mxlvkgqmfywzqid2r1h",
"depends": ["ComplexHeatmap", "Matrix", "biomaRt", "circlize", "dplyr", "ggpubr", "igraph", "magrittr", "plyr", "purrr"]
},
"doppelgangR": {
"name": "doppelgangR",
"version": "1.38.0",
"sha256": "00jn4m8ffp3ql9qhdybjngxjki3g2hpzwdjamld7h6v2gs5dpds7",
"depends": ["Biobase", "BiocParallel", "SummarizedExperiment", "digest", "impute", "mnormt", "sva"]
},
"doseR": {
"name": "doseR",
"version": "1.26.0",
"sha256": "0v5gnikdjnsyy4iy45wvbhy16z5cbh9wcls460xmxdvxf2c4sb79",
"depends": ["RUnit", "S4Vectors", "SummarizedExperiment", "digest", "edgeR", "lme4", "matrixStats", "mclust"]
},
"doubletrouble": {
"name": "doubletrouble",
"version": "1.10.0",
"sha256": "129q971qsa4hgvfw2kaf40228ssb4syacj2sb5v59dl41vdlj5ah",
"depends": ["AnnotationDbi", "Biostrings", "GenomicFeatures", "GenomicRanges", "MSA2dist", "ggplot2", "mclust", "rlang", "syntenet"]
},
"dreamlet": {
"name": "dreamlet",
"version": "1.8.0",
"sha256": "1vz6a353sqgizv41gm2hrc5dzmqlwcmg50p9kscwpzrhpxid7dxn",
"depends": ["BiocGenerics", "BiocParallel", "DelayedArray", "DelayedMatrixStats", "GSEABase", "IRanges", "MASS", "Matrix", "MatrixGenerics", "Rcpp", "Rdpack", "S4Arrays", "S4Vectors", "SingleCellExperiment", "SparseArray", "SummarizedExperiment", "ashr", "beachmat", "broom", "data_table", "dplyr", "edgeR", "ggbeeswarm", "ggplot2", "ggrepel", "gtools", "irlba", "limma", "lme4", "mashr", "metafor", "purrr", "remaCor", "reshape2", "rlang", "scattermore", "sparseMatrixStats", "tidyr", "variancePartition", "zenith"]
},
"drugTargetInteractions": {
"name": "drugTargetInteractions",
"version": "1.18.0",
"sha256": "056dw485jmlb57w0mwmpww2xrpxkl2lai91rds77vcchvywmpa53",
"depends": ["AnnotationFilter", "BiocFileCache", "RSQLite", "S4Vectors", "UniProt_ws", "biomaRt", "dplyr", "ensembldb", "rappdirs"]
},
"dupRadar": {
"name": "dupRadar",
"version": "1.40.0",
"sha256": "06xhsss7hqm4n9300ff13zn4w3640i52vf00kdxkvhqzdn2vzwih",
"depends": ["KernSmooth", "Rsubread"]
},
"dyebias": {
"name": "dyebias",
"version": "1.70.0",
"sha256": "0ylw1wli84p8yxn7sibdg134xkgq52mi7sjpj3sjkym3d70r525i",
"depends": ["Biobase", "marray"]
},
"easier": {
"name": "easier",
"version": "1.16.0",
"sha256": "0z1znn8c5xkiqvfglqdmip3jh2h0idw8khrnr2hjid1fjxw2y8vf",
"depends": ["BiocParallel", "DESeq2", "ROCR", "coin", "decoupleR", "dorothea", "dplyr", "easierData", "ggplot2", "ggpubr", "ggrepel", "magrittr", "matrixStats", "progeny", "quantiseqr", "reshape2", "rlang", "rstatix", "tibble", "tidyr"]
},
"easyRNASeq": {
"name": "easyRNASeq",
"version": "2.46.0",
"sha256": "1vbfwgnpbqwcmqvfg4gawk8jazq709gw84wydxywwg9hl3pnxbhf",
"depends": ["Biobase", "BiocFileCache", "BiocGenerics", "BiocParallel", "Biostrings", "GenomicAlignments", "GenomicRanges", "IRanges", "LSD", "Rsamtools", "S4Vectors", "Seqinfo", "ShortRead", "SummarizedExperiment", "biomaRt", "edgeR", "genomeIntervals", "rappdirs"]
},
"easylift": {
"name": "easylift",
"version": "1.8.0",
"sha256": "04fqsf7q6fj1mpz90dj1xd2ndkdvlps72l8yqinhkjpb8wig4kx0",
"depends": ["BiocFileCache", "GenomeInfoDb", "GenomicRanges", "R_utils", "rtracklayer"]
},
"easyreporting": {
"name": "easyreporting",
"version": "1.22.0",
"sha256": "0a0fl73njp9izd64fn825jjcwic6fb69g03d2dl8c91mkw7m9raf",
"depends": ["rlang", "rmarkdown", "shiny"]
},
"ecolitk": {
"name": "ecolitk",
"version": "1.82.0",
"sha256": "1zwbrsa3i2arza278475kafd9197lwh3m8yn7rc4w8pgl6qdbjj5",
"depends": ["Biobase"]
},
"edge": {
"name": "edge",
"version": "2.42.0",
"sha256": "06axdnsa9gi2zxv4a4kraq5nk0hi9p98fsx68nkscsni6v55gdrr",
"depends": ["Biobase", "MASS", "qvalue", "sva"]
},
"edgeR": {
"name": "edgeR",
"version": "4.8.0",
"sha256": "0r0384f1kxx861diwrwrrqqy0jv0qyc06rfhwl0x1m4lahcb3sk3",
"depends": ["limma", "locfit"]
},
"eds": {
"name": "eds",
"version": "1.12.0",
"sha256": "0vz9260ahfzp61sw9wm4wpff27lcwmcbk82f2hm3l92qk29dkd0z",
"depends": ["Matrix", "Rcpp"]
},
"eiR": {
"name": "eiR",
"version": "1.50.0",
"sha256": "1zqd25hnn2nfhc0vb2v5ygwppiv8gndd2282pd0xapv5blqj30jv",
"depends": ["BiocGenerics", "ChemmineR", "DBI", "RCurl", "RUnit", "RcppAnnoy", "digest", "snow", "snowfall"]
},
"eisaR": {
"name": "eisaR",
"version": "1.22.0",
"sha256": "1c95y084aw3fwz8j2rdkz8zy79k5c9gpg64dry72c587pws7xvq9",
"depends": ["BiocGenerics", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment", "edgeR", "limma"]
},
"enhancerHomologSearch": {
"name": "enhancerHomologSearch",
"version": "1.16.0",
"sha256": "08v24val3dy84fhq1vxxf36w3ya1x0l1sl2yyby4zjhdav7i6nnf",
"depends": ["BSgenome", "BiocFileCache", "BiocGenerics", "BiocParallel", "Biostrings", "GenomicRanges", "IRanges", "Matrix", "Rcpp", "S4Vectors", "Seqinfo", "httr", "jsonlite", "motifmatchr", "pwalign", "rtracklayer"]
},
"enrichViewNet": {
"name": "enrichViewNet",
"version": "1.8.0",
"sha256": "02xzw4yg9mdc64mgyc25vdyxh5q09c3hpigcyqad80inf6lafy4x",
"depends": ["DOSE", "RCy3", "enrichplot", "gprofiler2", "igraph", "jsonlite", "reshape2", "strex", "stringr"]
},
"enrichplot": {
"name": "enrichplot",
"version": "1.30.0",
"sha256": "1yh6isyyk58na142zwbaxm9my2vavzyiyafn6kaq2aza7aa2vww7",
"depends": ["DOSE", "GOSemSim", "RColorBrewer", "aplot", "ggfun", "ggnewscale", "ggplot2", "ggrepel", "ggtangle", "ggtree", "igraph", "magrittr", "plyr", "purrr", "reshape2", "rlang", "scatterpie", "yulab_utils"]
},
"ensembldb": {
"name": "ensembldb",
"version": "2.34.0",
"sha256": "15abvvsm4n26dl5nxrij03xnj3qxai3ckb1fif9x2znvq8127zcd",
"depends": ["AnnotationDbi", "AnnotationFilter", "Biobase", "BiocGenerics", "Biostrings", "DBI", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "ProtGenerics", "RSQLite", "Rsamtools", "S4Vectors", "Seqinfo", "curl", "rtracklayer"]
},
"epiNEM": {
"name": "epiNEM",
"version": "1.34.0",
"sha256": "0xp69ch3c6r5jn0q8qmwjfmzqxvrwipsk14slxgi6ykxiz6jaqwh",
"depends": ["BoolNet", "BoutrosLab_plotting_general", "RColorBrewer", "e1071", "graph", "gtools", "igraph", "latex2exp", "lattice", "latticeExtra", "minet", "mnem", "pcalg"]
},
"epialleleR": {
"name": "epialleleR",
"version": "1.18.0",
"sha256": "1d6kkdr9lr01l0agi0gh6674r7rvs5k80kpp36i279v7mz2irs6z",
"depends": ["BH", "BiocGenerics", "GenomicRanges", "Rcpp", "Rhtslib", "data_table"]
},
"epidecodeR": {
"name": "epidecodeR",
"version": "1.18.0",
"sha256": "1h8za7ijzjmik225zx14yg607adlmvlal7psni9a7n9bpx8jp2pw",
"depends": ["EnvStats", "GenomicRanges", "IRanges", "dplyr", "ggplot2", "ggpubr", "rstatix", "rtracklayer"]
},
"epigraHMM": {
"name": "epigraHMM",
"version": "1.18.0",
"sha256": "0cicl35l5zcfrxyrg90bd6r1scrizxbfj6vnpizacj6iyf6aj3sg",
"depends": ["GenomicRanges", "GreyListChIP", "IRanges", "MASS", "Matrix", "Rcpp", "RcppArmadillo", "Rhdf5lib", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "bamsignals", "csaw", "data_table", "ggplot2", "ggpubr", "limma", "magrittr", "pheatmap", "rhdf5", "rtracklayer", "scales"]
},
"epimutacions": {
"name": "epimutacions",
"version": "1.14.0",
"sha256": "1p23md7vyg4lj5x2vdjgq1cfbp0zaxdg6rlmwkwjlbg0ir9mvla2",
"depends": ["AnnotationDbi", "AnnotationHub", "BiocGenerics", "BiocParallel", "ExperimentHub", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "Gviz", "Homo_sapiens", "IRanges", "IlluminaHumanMethylation450kanno_ilmn12_hg19", "IlluminaHumanMethylation450kmanifest", "IlluminaHumanMethylationEPICanno_ilm10b2_hg19", "IlluminaHumanMethylationEPICmanifest", "S4Vectors", "SummarizedExperiment", "TxDb_Hsapiens_UCSC_hg18_knownGene", "TxDb_Hsapiens_UCSC_hg19_knownGene", "TxDb_Hsapiens_UCSC_hg38_knownGene", "biomaRt", "bumphunter", "ensembldb", "epimutacionsData", "ggplot2", "ggrepel", "gridExtra", "isotree", "matrixStats", "minfi", "purrr", "reshape2", "robustbase", "rtracklayer", "tibble"]
},
"epiregulon": {
"name": "epiregulon",
"version": "2.0.0",
"sha256": "10k4gi72qsvr2xy9awcjqqfqlz3jkp1ncmnhq6gxa0dsbsdm1lcr",
"depends": ["AnnotationHub", "BSgenome_Hsapiens_UCSC_hg19", "BSgenome_Hsapiens_UCSC_hg38", "BSgenome_Mmusculus_UCSC_mm10", "BiocParallel", "ExperimentHub", "GenomeInfoDb", "GenomicRanges", "IRanges", "Matrix", "Rcpp", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "checkmate", "entropy", "lifecycle", "motifmatchr", "scran", "scrapper", "scuttle"]
},
"epiregulon_extra": {
"name": "epiregulon.extra",
"version": "1.6.0",
"sha256": "0id51n3fpcw3zbzzvyyj30ggw5ab04g8cbw5kh22411a66b1hf9m",
"depends": ["ComplexHeatmap", "Matrix", "SingleCellExperiment", "SummarizedExperiment", "checkmate", "circlize", "clusterProfiler", "ggplot2", "ggraph", "igraph", "patchwork", "reshape2", "scales", "scater", "scran"]
},
"epistack": {
"name": "epistack",
"version": "1.16.0",
"sha256": "1vdqpdnif38nga5xpnj4d8d1jz0w4rlxnpzbl4d0xm7075zgckhh",
"depends": ["BiocGenerics", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment", "plotrix"]
},
"epistasisGA": {
"name": "epistasisGA",
"version": "1.12.0",
"sha256": "09svmywzzip89jdz6wc7c4sqlilyvkwr4sqc41dr6d615z88z755",
"depends": ["BH", "BiocParallel", "Rcpp", "RcppArmadillo", "batchtools", "bigmemory", "data_table", "ggplot2", "igraph", "matrixStats", "qgraph", "survival"]
},
"epivizr": {
"name": "epivizr",
"version": "2.40.0",
"sha256": "1yhn33p12497p2zzf6sar93gb9par2d4hsiq63kpjky6c8g3xw95",
"depends": ["GenomeInfoDb", "GenomicRanges", "IRanges", "S4Vectors", "bumphunter", "epivizrData", "epivizrServer"]
},
"epivizrChart": {
"name": "epivizrChart",
"version": "1.32.0",
"sha256": "17sc1wd55vjakb62341w8xgpvy2dz16zwy5ryyzdkvlwgp002f9x",
"depends": ["BiocGenerics", "epivizrData", "epivizrServer", "htmltools", "rjson"]
},
"epivizrData": {
"name": "epivizrData",
"version": "1.38.0",
"sha256": "19nkckx5a54zl3r3ck7nfnqzsjw0r6dxindd0gfx8jm9b9y9yxs3",
"depends": ["Biobase", "GenomicFeatures", "GenomicRanges", "IRanges", "OrganismDbi", "S4Vectors", "Seqinfo", "SummarizedExperiment", "ensembldb", "epivizrServer"]
},
"epivizrServer": {
"name": "epivizrServer",
"version": "1.38.0",
"sha256": "19lvghdnq6p2lr280ml0wvmh6q1071x2l1pacf2p354va0idkxkm",
"depends": ["R6", "httpuv", "mime", "rjson"]
},
"epivizrStandalone": {
"name": "epivizrStandalone",
"version": "1.38.0",
"sha256": "0l253z1fvxll449p5nvp0qy43xkzmk6mggyacw3fbkfndlakpv5a",
"depends": ["BiocGenerics", "GenomicFeatures", "S4Vectors", "Seqinfo", "epivizr", "epivizrServer", "git2r"]
},
"erccdashboard": {
"name": "erccdashboard",
"version": "1.44.0",
"sha256": "0af77ir60aqlg5589hkkcr5hapl9nymgxc1m3j2cb5hg23nsw3j4",
"depends": ["MASS", "ROCR", "edgeR", "ggplot2", "gplots", "gridExtra", "gtools", "knitr", "limma", "locfit", "plyr", "qvalue", "reshape2", "scales", "stringr"]
},
"esATAC": {
"name": "esATAC",
"version": "1.32.0",
"sha256": "0gvw67vdw2bcjn7g4077397vsf3lgfdayfxym5miz3gd0bdd8gln",
"depends": ["AnnotationDbi", "BSgenome", "BiocGenerics", "BiocManager", "Biostrings", "ChIPseeker", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "JASPAR2018", "R_utils", "Rbowtie2", "Rcpp", "Rsamtools", "S4Vectors", "Seqinfo", "ShortRead", "TFBSTools", "VennDiagram", "clusterProfiler", "corrplot", "digest", "ggplot2", "igraph", "knitr", "magrittr", "motifmatchr", "pipeFrame", "rJava", "rmarkdown", "rtracklayer"]
},
"escape": {
"name": "escape",
"version": "2.5.5",
"sha256": "0i8d7qsc0mb6zlcwahi9f4gmx71as49wj09l82hkyvf0g50b30wc",
"depends": ["Matrix", "MatrixGenerics", "SummarizedExperiment", "ggdist", "ggplot2"]
},
"escheR": {
"name": "escheR",
"version": "1.10.0",
"sha256": "0blmmcn2vys0pkkyfhbwy1lpywbcb9m4yp2xz4njgq3iml5bb98x",
"depends": ["SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "ggplot2", "rlang"]
},
"esetVis": {
"name": "esetVis",
"version": "1.36.0",
"sha256": "1crl2f2wxb98k1xjmbcbl143wpy6nv2blmyl78iix154pjcb7rkv",
"depends": ["Biobase", "MASS", "MLP", "Rtsne", "hexbin", "mpm"]
},
"eudysbiome": {
"name": "eudysbiome",
"version": "1.40.0",
"sha256": "1zxh2gpbhl2sbpv0yrhay3rxkcv5mcgmdmc99ixmj9lfrw1zl4nv",
"depends": ["Biostrings", "R_utils", "Rsamtools", "plyr"]
},
"evaluomeR": {
"name": "evaluomeR",
"version": "1.26.0",
"sha256": "1disy9mbq8090bsl429lz0b30vb7k2ss3qyrcig8i3ldsyr9gw25",
"depends": ["MASS", "MultiAssayExperiment", "RSKC", "Rdpack", "SummarizedExperiment", "class", "cluster", "corrplot", "dendextend", "dplyr", "flexmix", "fpc", "ggdendro", "ggplot2", "kableExtra", "matrixStats", "mclust", "plotrix", "prabclus", "randomForest", "reshape2", "sparcl"]
},
"extraChIPs": {
"name": "extraChIPs",
"version": "1.14.0",
"sha256": "08lk9lqiincl5g4r9lmra3557jn6vklmsc6c2iw142j9xr3y8d0v",
"depends": ["BiocParallel", "GenomeInfoDb", "GenomicRanges", "IRanges", "InteractionSet", "RColorBrewer", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "csaw", "dplyr", "edgeR", "forcats", "ggplot2", "ggrepel", "ggside", "glue", "matrixStats", "patchwork", "rlang", "rtracklayer", "scales", "stringr", "tibble", "tidyr", "tidyselect", "vctrs"]
},
"fCCAC": {
"name": "fCCAC",
"version": "1.36.0",
"sha256": "00mcnlfawsvya1rclivkkig5nfwlb47kc44b2xvfk2njkild8fbd",
"depends": ["ComplexHeatmap", "GenomicRanges", "IRanges", "RColorBrewer", "S4Vectors", "fda", "genomation", "ggplot2"]
},
"fCI": {
"name": "fCI",
"version": "1.40.0",
"sha256": "1icdmwbl27c7i2hrkhqj201fnbzj5g6ybhmv2dd5lfhpx3gww6lr",
"depends": ["FNN", "VennDiagram", "gtools", "psych", "rgl", "zoo"]
},
"fabia": {
"name": "fabia",
"version": "2.56.0",
"sha256": "1419icrgj7hxi713f4l2l6sqfxh9g1c49g4ls879bvfssxndsxds",
"depends": ["Biobase"]
},
"factDesign": {
"name": "factDesign",
"version": "1.86.0",
"sha256": "174r4prhhp2fbl9kaxp28p36srj65pp72lxqwicsr25vwkp4vfvs",
"depends": ["Biobase"]
},
"faers": {
"name": "faers",
"version": "1.6.0",
"sha256": "1w6b5h3ww33nydfwa2hbmxag9am7wd39gmsm5155bl83qrdyxxfa",
"depends": ["BiocParallel", "MCMCpack", "brio", "cli", "curl", "data_table", "httr2", "openEBGM", "rlang", "rvest", "vroom", "xml2"]
},
"fastLiquidAssociation": {
"name": "fastLiquidAssociation",
"version": "1.46.0",
"sha256": "0qvacr9486r6sdw3f6rxrs7rhhk0aigsxjqqib771vi69q480bf4",
"depends": ["Hmisc", "LiquidAssociation", "WGCNA", "doParallel", "impute", "preprocessCore"]
},
"fastreeR": {
"name": "fastreeR",
"version": "2.0.0",
"sha256": "02pw9gsakadzb7p1k1fk6ynqyqlflxilw7mvgjn94z11lzjvxfx4",
"depends": ["R_utils", "ape", "data_table", "dynamicTreeCut", "rJava", "stringr"]
},
"fastseg": {
"name": "fastseg",
"version": "1.56.0",
"sha256": "0q007hg6afi4h05gkw1hm7aqi0g9lzqxnq6yljkl14lvw0ihjb3h",
"depends": ["Biobase", "BiocGenerics", "GenomicRanges", "IRanges", "S4Vectors"]
},
"fcScan": {
"name": "fcScan",
"version": "1.24.0",
"sha256": "0w4g65qcaxy8x30r1f638dm69kslxab2gy761ggvb8if5r7631sb",
"depends": ["GenomicRanges", "IRanges", "SummarizedExperiment", "VariantAnnotation", "doParallel", "foreach", "plyr", "rtracklayer"]
},
"fdrame": {
"name": "fdrame",
"version": "1.82.0",
"sha256": "1526yh6rbimf0lnpmbi2dhamfrcfahfb85q23h3i6x0pcrp3nw2f",
"depends": []
},
"fedup": {
"name": "fedup",
"version": "1.18.0",
"sha256": "0lv648vh8kp14b1alnp5p5x3kykj5sb19rp3vs7nf0fqr1yid3xn",
"depends": ["RColorBrewer", "RCy3", "data_table", "dplyr", "forcats", "ggplot2", "ggthemes", "openxlsx", "tibble"]
},
"fenr": {
"name": "fenr",
"version": "1.8.0",
"sha256": "0lpfach366p3z9y0z0r6xgv5yk02dr0782caxhjsix7jid1rf48v",
"depends": ["BiocFileCache", "assertthat", "dplyr", "ggplot2", "httr2", "progress", "purrr", "readr", "rlang", "rvest", "shiny", "stringr", "tibble", "tidyr", "tidyselect"]
},
"ffpe": {
"name": "ffpe",
"version": "1.54.0",
"sha256": "18k4i9hy7c1hrpm8cqi1npx4dq9fand6lrdk92mbr7lcgl3w25lh",
"depends": ["Biobase", "BiocGenerics", "TTR", "affy", "lumi", "methylumi", "sfsmisc"]
},
"fgga": {
"name": "fgga",
"version": "1.18.0",
"sha256": "1hz72m434axgiikh8bfk5jb16aq920y8wqimphpd27v8iq452fv1",
"depends": ["BiocFileCache", "RBGL", "curl", "e1071", "gRbase", "graph", "igraph", "jsonlite"]
},
"fgsea": {
"name": "fgsea",
"version": "1.36.0",
"sha256": "040z8k28zg9rlvlrywp1ah39pcll74jdmfzhy2r7rijmmvw8ypip",
"depends": ["BH", "BiocParallel", "Matrix", "Rcpp", "cowplot", "data_table", "fastmatch", "ggplot2", "scales"]
},
"findIPs": {
"name": "findIPs",
"version": "1.6.0",
"sha256": "1fw8zjnn9ayijqjjmjx7w7jpwrsfcnlinznqvjd4qsi0bz8zir3b",
"depends": ["Biobase", "BiocParallel", "SummarizedExperiment", "survival"]
},
"fishpond": {
"name": "fishpond",
"version": "2.16.0",
"sha256": "0bqbsciq0yxldc8zdjj829n11pn2r4qrc4wsnarm2dp49dy4ipp3",
"depends": ["GenomicRanges", "IRanges", "Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "abind", "gtools", "jsonlite", "matrixStats", "qvalue", "svMisc"]
},
"flagme": {
"name": "flagme",
"version": "1.66.0",
"sha256": "0zyjvwd4xgdy0brfb8xyq1h4il8gx65s2smk7395qh87fqbkd05k",
"depends": ["CAMERA", "MASS", "SparseM", "gcspikelite", "gplots", "xcms"]
},
"flowAI": {
"name": "flowAI",
"version": "1.40.0",
"sha256": "095410xm3zmbbp5sfwp581mhnndcsq4g325f4i0gka1ll5hqnwqm",
"depends": ["RColorBrewer", "changepoint", "flowCore", "ggplot2", "knitr", "plyr", "reshape2", "rmarkdown", "scales"]
},
"flowBeads": {
"name": "flowBeads",
"version": "1.48.0",
"sha256": "1gnxbz9lpiigaa5yk83k8vz15jd2ci86ya973m92ijdij3pkrc7h",
"depends": ["Biobase", "flowCore", "knitr", "rrcov", "xtable"]
},
"flowBin": {
"name": "flowBin",
"version": "1.46.0",
"sha256": "1r9hddrwq9s5i83j2scppg7cqbn9fr0ymyrh7wwbs22h83qwbcsj",
"depends": ["BiocGenerics", "class", "flowCore", "flowFP", "limma", "snow"]
},
"flowCHIC": {
"name": "flowCHIC",
"version": "1.44.0",
"sha256": "0qxy6s6l6m0whw33sf105bh683f56fmhdnf6wnq7ig00llm8c902",
"depends": ["EBImage", "flowCore", "ggplot2", "hexbin", "vegan"]
},
"flowClean": {
"name": "flowClean",
"version": "1.48.0",
"sha256": "1njbcr86x13pbp43aiacjpqxbfkiqdzdzddqrd8d9fkmsknfbbfh",
"depends": ["bit", "changepoint", "flowCore", "sfsmisc"]
},
"flowClust": {
"name": "flowClust",
"version": "3.48.0",
"sha256": "1ncx63ynqxaldc8mb68k8jwq116myml6ccgh9j7n5dcvhfcqgqf1",
"depends": ["Biobase", "BiocGenerics", "flowCore", "graph"]
},
"flowCore": {
"name": "flowCore",
"version": "2.22.0",
"sha256": "0rmlff8d36z8d59s9w4va0csdklz6vkl8k0ywyg6rgmg5k327jqd",
"depends": ["BH", "Biobase", "BiocGenerics", "RProtoBufLib", "Rcpp", "S4Vectors", "cpp11", "cytolib", "matrixStats"]
},
"flowCut": {
"name": "flowCut",
"version": "1.20.0",
"sha256": "1zism6y5gcqklncblf9ksbsnv2ic06djr4aq9h01ixjmmh1f4w72",
"depends": ["Cairo", "e1071", "flowCore", "flowDensity"]
},
"flowCyBar": {
"name": "flowCyBar",
"version": "1.46.0",
"sha256": "1ckzmjnjhjdw32mli8pyqgkmq6kk64vdm99qy165q32p39gfp3wl",
"depends": ["gplots", "vegan"]
},
"flowDensity": {
"name": "flowDensity",
"version": "1.44.0",
"sha256": "0rxjwx9pynpz0ylf8znd4h61qazl91p1s2435dsl654ik7wpqw8c",
"depends": ["car", "flowCore", "flowViz", "gplots", "polyclip"]
},
"flowFP": {
"name": "flowFP",
"version": "1.68.0",
"sha256": "1ngn0b3k28fksl6xx65634i138j87mn0s6myiw40blc2c485i9xz",
"depends": ["Biobase", "BiocGenerics", "flowCore", "flowViz"]
},
"flowGate": {
"name": "flowGate",
"version": "1.10.0",
"sha256": "0ddavbhgw62w2alj972n0q4l61ilz1iqnrc1mwdwaps0208b5l5d",
"depends": ["BiocManager", "dplyr", "flowCore", "flowWorkspace", "ggcyto", "ggplot2", "purrr", "rlang", "shiny", "tibble"]
},
"flowGraph": {
"name": "flowGraph",
"version": "1.18.0",
"sha256": "0dy2jygbm3dzcsh33abah8cnz9srxw2234qfyl0jrzpwnfs0c8vd",
"depends": ["Matrix", "Rdpack", "data_table", "effsize", "furrr", "future", "ggiraph", "ggplot2", "ggrepel", "gridExtra", "htmlwidgets", "igraph", "matrixStats", "purrr", "stringi", "stringr", "visNetwork"]
},
"flowMatch": {
"name": "flowMatch",
"version": "1.46.0",
"sha256": "0p8v6bxbc3mnwjf8lf6d5zqlddlcacwsayla2wbb0535dfvkfmjp",
"depends": ["Biobase", "Rcpp", "flowCore"]
},
"flowMeans": {
"name": "flowMeans",
"version": "1.70.0",
"sha256": "0q2pnfadn8f4hhn2qd7yqrdl9hkjmcqizm5wjjybrhxq1g8sb15d",
"depends": ["Biobase", "feature", "flowCore", "rrcov"]
},
"flowMerge": {
"name": "flowMerge",
"version": "2.58.0",
"sha256": "0j0m6r06gpxbjlr1x3cjx1iyp78b61kmdxs0d9fby7mjjj67k8jc",
"depends": ["Rgraphviz", "feature", "flowClust", "flowCore", "foreach", "graph", "rrcov", "snow"]
},
"flowPeaks": {
"name": "flowPeaks",
"version": "1.56.0",
"sha256": "1znvp3in8l6rcmmfbir2b94wgbmdf9bwisp21c5cfkxq5yckwdvx",
"depends": []
},
"flowPloidy": {
"name": "flowPloidy",
"version": "1.36.0",
"sha256": "0z8rrrw8c9pxp14dcdlb2g515krimv9hbmaivifrpswxhpwq6qln",
"depends": ["caTools", "car", "flowCore", "knitr", "minpack_lm", "rmarkdown", "shiny"]
},
"flowPlots": {
"name": "flowPlots",
"version": "1.58.0",
"sha256": "1hihd7jsfnhil3zisb1yhnc5p8qwxw681d2vj1zpg28lklvx702p",
"depends": []
},
"flowSpecs": {
"name": "flowSpecs",
"version": "1.24.0",
"sha256": "01an7rpmhwlvxh5y4silc4508yqp404g4fxsm2d9gjp3xpgwj2qn",
"depends": ["Biobase", "BiocGenerics", "BiocParallel", "flowCore", "ggplot2", "reshape2", "zoo"]
},
"flowStats": {
"name": "flowStats",
"version": "4.22.0",
"sha256": "0hf1y1bgvvnr3g8zj246pzyrl5p5811m509dvwd1jmzqri129fcl",
"depends": ["Biobase", "BiocGenerics", "KernSmooth", "MASS", "RColorBrewer", "clue", "cluster", "corpcor", "fda", "flowCore", "flowViz", "flowWorkspace", "ks", "lattice", "mnormt", "ncdfFlow", "rrcov"]
},
"flowTime": {
"name": "flowTime",
"version": "1.34.0",
"sha256": "15djxvxcffncxywwviwwgw2g09j1w4y5a293b6cs3paqlp6w05ba",
"depends": ["dplyr", "flowCore", "magrittr", "plyr", "rlang", "tibble"]
},
"flowTrans": {
"name": "flowTrans",
"version": "1.62.0",
"sha256": "16h776hi33axcqr9v7lcvzmrzh273gyg8gc1ybyi8j12ry5wlbrs",
"depends": ["flowClust", "flowCore", "flowViz"]
},
"flowVS": {
"name": "flowVS",
"version": "1.42.0",
"sha256": "0j7q9i3qy15xwncj7mhzmvivl45h7pykpk8ps3zlc5hmwv3ri9qm",
"depends": ["flowCore", "flowStats", "flowViz"]
},
"flowViz": {
"name": "flowViz",
"version": "1.74.0",
"sha256": "1615f5r2y51dazynjsihxp4q56zgn70wfd5fjcvr0pw3l7wbh77n",
"depends": ["Biobase", "IDPmisc", "KernSmooth", "MASS", "RColorBrewer", "flowCore", "hexbin", "lattice", "latticeExtra"]
},
"flowWorkspace": {
"name": "flowWorkspace",
"version": "4.22.0",
"sha256": "1hy44nyhgk8z85lis8nz1djsma4wyanixibs7qds0xgimk5r9qqq",
"depends": ["BH", "Biobase", "BiocGenerics", "DelayedArray", "RBGL", "RProtoBufLib", "Rgraphviz", "Rhdf5lib", "S4Vectors", "XML", "cpp11", "cytolib", "data_table", "dplyr", "flowCore", "ggplot2", "graph", "matrixStats", "ncdfFlow", "scales"]
},
"flowcatchR": {
"name": "flowcatchR",
"version": "1.44.0",
"sha256": "17nww1smm4vvfqfgjsdabcvix4hd836601y5cq0wial6y3ixhhmy",
"depends": ["BiocParallel", "EBImage", "abind", "colorRamps", "plotly", "shiny"]
},
"fmcsR": {
"name": "fmcsR",
"version": "1.52.0",
"sha256": "1x4hczppvdgsmdn57fmfkr9gcfj952jslha5fshs6pbyyq2xqjik",
"depends": ["BiocGenerics", "ChemmineR", "RUnit"]
},
"fmrs": {
"name": "fmrs",
"version": "1.20.0",
"sha256": "1ai903fi74kl10d6bamaaf75zclyvff589chad2z9xymf4ixybsc",
"depends": ["survival"]
},
"fobitools": {
"name": "fobitools",
"version": "1.18.0",
"sha256": "0bczh98lppj4kr0rbd1jsxc3syg3113f38h89y258b21m1ivp7my",
"depends": ["RecordLinkage", "clisymbols", "crayon", "dplyr", "fgsea", "ggplot2", "ggraph", "magrittr", "ontologyIndex", "purrr", "stringr", "textclean", "tictoc", "tidygraph", "tidyr", "vroom"]
},
"frenchFISH": {
"name": "frenchFISH",
"version": "1.22.0",
"sha256": "1fxd9p742j9svl0j86357iiy0h9slka69dgll58vmlrs4xzyq3p0",
"depends": ["MCMCpack", "NHPoisson"]
},
"frma": {
"name": "frma",
"version": "1.62.0",
"sha256": "0kiwvcivw27m394ls3qx7cl7lazbpa4kg4lg3hlg12jqzpb3z6dx",
"depends": ["Biobase", "BiocGenerics", "DBI", "MASS", "affy", "oligo", "oligoClasses", "preprocessCore"]
},
"frmaTools": {
"name": "frmaTools",
"version": "1.62.0",
"sha256": "0w3igjhqd2whmcvvwdjsgws1q4gb74d9gn7sgkb0zjc41rrh416c",
"depends": ["Biobase", "DBI", "affy", "preprocessCore"]
},
"funOmics": {
"name": "funOmics",
"version": "1.4.0",
"sha256": "1sqalmryyvgd68prhjvp9xmnx5v8sjirxpr86vv070ag75j4hs91",
"depends": ["AnnotationDbi", "KEGGREST", "NMF", "dplyr", "org_Hs_eg_db", "pathifier", "stringr"]
},
"funtooNorm": {
"name": "funtooNorm",
"version": "1.34.0",
"sha256": "1ka05p1cmv2cmlawir25c12hwb51bnnd8s327qqb3xyigkb32nb8",
"depends": ["GenomeInfoDb", "IlluminaHumanMethylation450kanno_ilmn12_hg19", "IlluminaHumanMethylation450kmanifest", "matrixStats", "minfi", "pls"]
},
"gCrisprTools": {
"name": "gCrisprTools",
"version": "2.16.0",
"sha256": "1i7gz0yalkdjgkx7ma3yrvyj5rj19s2cjy9wc2z6nkcbhqw7i8m7",
"depends": ["Biobase", "ComplexHeatmap", "RobustRankAggreg", "SummarizedExperiment", "ggplot2", "limma", "rmarkdown"]
},
"gDNAx": {
"name": "gDNAx",
"version": "1.8.0",
"sha256": "0nzqf4rnvn42br0awr8qwmp0w4cjnp6rwv414rz51pgan59vgcg9",
"depends": ["AnnotationDbi", "AnnotationHub", "BiocGenerics", "BiocParallel", "Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicFiles", "GenomicRanges", "IRanges", "RColorBrewer", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "bitops", "cli", "matrixStats", "plotrix"]
},
"gDR": {
"name": "gDR",
"version": "1.8.0",
"sha256": "0h7pjvrjl2l6h51vnws4mkxgfl9q3xpn9gakv5imqfliw22q23mp",
"depends": ["gDRcore", "gDRimport", "gDRutils"]
},
"gDRcore": {
"name": "gDRcore",
"version": "1.8.0",
"sha256": "1h0najhngsqcyn431wixj82j6j2j9mx5qj7whssm0db48dj1y71k",
"depends": ["BiocParallel", "BumpyMatrix", "MultiAssayExperiment", "S4Vectors", "SummarizedExperiment", "checkmate", "data_table", "futile_logger", "gDRutils", "purrr", "stringr"]
},
"gDRimport": {
"name": "gDRimport",
"version": "1.8.0",
"sha256": "1lxl7m5lvza1jwcbbfh71jwjn1s17ys06skwxmz6k98nbdgx98nh",
"depends": ["BumpyMatrix", "CoreGx", "MultiAssayExperiment", "PharmacoGx", "S4Vectors", "SummarizedExperiment", "XML", "assertthat", "checkmate", "data_table", "futile_logger", "gDRutils", "magrittr", "openxlsx", "readxl", "rio", "stringi", "tibble", "yaml"]
},
"gDRstyle": {
"name": "gDRstyle",
"version": "1.8.0",
"sha256": "1qip0l8qg972yrb4mhzp74ils8d2iw9j5df3kfi9rsblzbqz7093",
"depends": ["BiocCheck", "BiocManager", "BiocStyle", "checkmate", "desc", "git2r", "lintr", "pkgbuild", "rcmdcheck", "remotes", "rjson", "withr", "yaml"]
},
"gDRutils": {
"name": "gDRutils",
"version": "1.8.0",
"sha256": "0fmga9d395srdlsmw4ivpm5x99snyg6pwd9qp80xfjf4y62k1p47",
"depends": ["BiocParallel", "BumpyMatrix", "MultiAssayExperiment", "S4Vectors", "SummarizedExperiment", "checkmate", "data_table", "digest", "drc", "jsonlite", "jsonvalidate", "qs", "stringr"]
},
"gVenn": {
"name": "gVenn",
"version": "1.0.0",
"sha256": "146596jgp3g7xiismdll8l0sfhyragn3ggpln2jmjqmk868k2hzc",
"depends": ["ComplexHeatmap", "GenomicRanges", "IRanges", "eulerr", "lubridate", "rtracklayer", "stringr", "writexl"]
},
"gaga": {
"name": "gaga",
"version": "2.56.0",
"sha256": "0zia3kqnxfcvkc8jijzgmhkm3nk43nvd5z84aanbzzqrmnxlws4j",
"depends": ["Biobase", "EBarrays", "coda", "mgcv"]
},
"gage": {
"name": "gage",
"version": "2.60.0",
"sha256": "0qza3nm3fmm6g8jsymiv7k8pqygxb1c4gys5gf65nj3gbwrnscba",
"depends": ["AnnotationDbi", "GO_db", "KEGGREST", "graph"]
},
"garfield": {
"name": "garfield",
"version": "1.38.0",
"sha256": "1xw5ylns5jfjlbz0m3kdp71067p6rxlg8zxmx5xvnr1igqmz8mk0",
"depends": []
},
"gatom": {
"name": "gatom",
"version": "1.8.0",
"sha256": "1sps2fmi2dwxxrnf0l7rf58ng8mqhfx2lr44vrhhgmbvc9n7gsnr",
"depends": ["BioNet", "GGally", "XML", "data_table", "ggplot2", "htmltools", "htmlwidgets", "igraph", "intergraph", "mwcsr", "network", "plyr", "pryr", "shinyCyJS", "sna"]
},
"gcapc": {
"name": "gcapc",
"version": "1.34.0",
"sha256": "157jslmk9big03fag3687v9gzi8r6fmvcbx819sv344qjw6iid95",
"depends": ["BSgenome", "BiocGenerics", "Biostrings", "GenomicAlignments", "GenomicRanges", "IRanges", "MASS", "Rsamtools", "S4Vectors", "Seqinfo", "matrixStats"]
},
"gcatest": {
"name": "gcatest",
"version": "2.10.0",
"sha256": "0ay9ji48x3ypz7x8x7qhrp6r762p021c1hmc0j12sgs1f3wkwbh9",
"depends": ["lfa"]
},
"gcrma": {
"name": "gcrma",
"version": "2.82.0",
"sha256": "1q37xcka0lxacslrbka36kic0fb3w7qsy1rl78spbzdykzxbgnc1",
"depends": ["Biobase", "BiocManager", "Biostrings", "XVector", "affy", "affyio"]
},
"gdsfmt": {
"name": "gdsfmt",
"version": "1.46.0",
"sha256": "0kc4s5c82qbkrbfqg1n46302ab3in7z106jgsdvbj3k3ms2d6y4v",
"depends": []
},
"geNetClassifier": {
"name": "geNetClassifier",
"version": "1.50.0",
"sha256": "1hsm0zbzw5syz9f0jrwxlczac11xc8as9w9vlhibwmc7hm8aasqx",
"depends": ["Biobase", "EBarrays", "e1071", "minet"]
},
"gemini": {
"name": "gemini",
"version": "1.24.0",
"sha256": "0kw4hkgv7w31wmjjgwwq5d3d52mfb8v37yqvicbkp1ah3i2w9wl9",
"depends": ["dplyr", "ggplot2", "magrittr", "mixtools", "pbmcapply", "scales"]
},
"gemma_R": {
"name": "gemma.R",
"version": "3.6.0",
"sha256": "1p23x7jnsi4ja8f45pf2vqlyx26730nhfhlxrc3kq0qkhx10xyl1",
"depends": ["Biobase", "R_utils", "S4Vectors", "SummarizedExperiment", "assertthat", "base64enc", "bit64", "data_table", "digest", "glue", "httr", "jsonlite", "kableExtra", "lubridate", "magrittr", "memoise", "rappdirs", "rlang", "stringr", "tibble", "tidyr"]
},
"genArise": {
"name": "genArise",
"version": "1.86.0",
"sha256": "1kv4f2d0zlm5nikz3wqs66g648ag1m2fx64lq29q37hnpaz25xib",
"depends": ["locfit", "tkrplot", "xtable"]
},
"geneAttribution": {
"name": "geneAttribution",
"version": "1.36.0",
"sha256": "14ba7smlaij0h0lmp3z63mzhbni9p26anl8psdl5aaqvlvkzaqkr",
"depends": ["BiocGenerics", "GenomicFeatures", "GenomicRanges", "IRanges", "Seqinfo", "org_Hs_eg_db", "rtracklayer"]
},
"geneClassifiers": {
"name": "geneClassifiers",
"version": "1.34.0",
"sha256": "1avhd24hcfh0a8g0h5171rbxrqnf8bq3frdspqnkls3f7vzqx2b2",
"depends": ["Biobase", "BiocGenerics"]
},
"geneRecommender": {
"name": "geneRecommender",
"version": "1.82.0",
"sha256": "037m4fhflfqa4jpms9200qb5l9j780b3glwfr5vff37hy1rr7wag",
"depends": ["Biobase"]
},
"geneRxCluster": {
"name": "geneRxCluster",
"version": "1.46.0",
"sha256": "1ay2n9p707qkiwvqblm39yys8mnfq7zbps2j1yx8vcq5l8h42hsl",
"depends": ["GenomicRanges", "IRanges"]
},
"geneXtendeR": {
"name": "geneXtendeR",
"version": "1.36.0",
"sha256": "1cirzfrxwrqqakpwizih0ixvxnkvj7vmphr5nwrvmhpfbavs3dkf",
"depends": ["AnnotationDbi", "BiocStyle", "GO_db", "RColorBrewer", "SnowballC", "data_table", "dplyr", "networkD3", "org_Rn_eg_db", "rtracklayer", "tm", "wordcloud"]
},
"genefilter": {
"name": "genefilter",
"version": "1.92.0",
"sha256": "1snc3xkw1x2d6cbxsprpbnhh9ywcb0mf56qgm2hnd1qyy1ldaylc",
"depends": ["AnnotationDbi", "Biobase", "MatrixGenerics", "annotate", "survival"]
},
"genefu": {
"name": "genefu",
"version": "2.42.0",
"sha256": "11264hwfp1wkbnq2y7i4n8xh2hamq8qc92jb6shyl84fc6m2c21z",
"depends": ["AIMS", "amap", "biomaRt", "iC10", "iC10TrainingData", "impute", "limma", "mclust", "survcomp"]
},
"geneplast": {
"name": "geneplast",
"version": "1.36.0",
"sha256": "1p3rav9c8fzq1mwi93w4rcg9y92m3rxg98qqn1khg7m7dq1vqkpr",
"depends": ["ape", "data_table", "igraph", "snow"]
},
"geneplotter": {
"name": "geneplotter",
"version": "1.88.0",
"sha256": "1b2iq04rxzq28bihr9abhk66ynnjizkgkdls66r2g3r3kdm66xzm",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "RColorBrewer", "annotate", "lattice"]
},
"genomation": {
"name": "genomation",
"version": "1.42.0",
"sha256": "1v0zq82cg4vixmsa4plcjf0zp1zvw1m4g54micazkzjkyxsfcfvh",
"depends": ["BSgenome", "Biostrings", "GenomicAlignments", "GenomicRanges", "IRanges", "Rcpp", "Rsamtools", "S4Vectors", "Seqinfo", "data_table", "ggplot2", "gridBase", "impute", "matrixStats", "plotrix", "plyr", "readr", "reshape2", "rtracklayer", "seqPattern"]
},
"genomeIntervals": {
"name": "genomeIntervals",
"version": "1.66.0",
"sha256": "0igfivmkfbd299gbrwabbfs8n1m79xy1irgsnsj89bw7xxmasxxa",
"depends": ["BiocGenerics", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "intervals"]
},
"genomes": {
"name": "genomes",
"version": "3.40.0",
"sha256": "1ygp7gcn791hkny17y01ycg193zf6aibab9493vs8w15k9zjv5h9",
"depends": ["curl", "readr"]
},
"genomicInstability": {
"name": "genomicInstability",
"version": "1.16.0",
"sha256": "0pbzh2a0m94bqshmkw5fgd9scsn82k3vfmk67hlpkfi36kj18ws0",
"depends": ["SummarizedExperiment", "checkmate", "mixtools"]
},
"geomeTriD": {
"name": "geomeTriD",
"version": "1.4.0",
"sha256": "0cpvbmdv7wbsd284kqxh621vm60b98slj52cj6nsrli77rz5nm06",
"depends": ["BiocGenerics", "Biostrings", "GenomicRanges", "IRanges", "InteractionSet", "MASS", "Matrix", "RANN", "S4Vectors", "Seqinfo", "aricode", "clue", "cluster", "dbscan", "future_apply", "htmlwidgets", "igraph", "plotrix", "progressr", "rgl", "rjson", "scales", "trackViewer"]
},
"gep2pep": {
"name": "gep2pep",
"version": "1.30.0",
"sha256": "12ap7376fpr76hjamswca0h2z48k791gs8fmw5kba56ngsypr1f6",
"depends": ["Biobase", "GSEABase", "XML", "digest", "foreach", "iterators", "repo", "rhdf5"]
},
"getDEE2": {
"name": "getDEE2",
"version": "1.20.0",
"sha256": "0pqbyvj5063xn048x38yg9zpvzg82r4ksbmj4a0gx4cxpw2g4cyf",
"depends": ["SummarizedExperiment", "htm2txt"]
},
"geva": {
"name": "geva",
"version": "1.18.0",
"sha256": "0pj4dxfqkas5zd71310q32y4r5msd4984rrc2f6xaxhd8dip3cgs",
"depends": ["dbscan", "fastcluster", "matrixStats"]
},
"geyser": {
"name": "geyser",
"version": "1.2.0",
"sha256": "146avnl23jsn2r19r3ynqqrkkpsghkix738zbac9dqfz3yd7g44x",
"depends": ["BiocStyle", "ComplexHeatmap", "DT", "SummarizedExperiment", "bslib", "dplyr", "ggbeeswarm", "ggplot2", "htmltools", "magrittr", "shiny", "tibble", "tidyr", "tidyselect"]
},
"gg4way": {
"name": "gg4way",
"version": "1.8.0",
"sha256": "0v9hldgi84k99smaycrfq36simzs7dwfa5c2a3qf1dfbz9ia9ksl",
"depends": ["DESeq2", "dplyr", "edgeR", "ggplot2", "ggrepel", "glue", "janitor", "limma", "magrittr", "purrr", "rlang", "scales", "stringr", "tibble", "tidyr"]
},
"ggbio": {
"name": "ggbio",
"version": "1.58.0",
"sha256": "0wnscz1r9khbh6lha55025s5wkvs2i3z4v1cjz0v3gkgkva545ff",
"depends": ["AnnotationDbi", "AnnotationFilter", "BSgenome", "Biobase", "BiocGenerics", "Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "Hmisc", "IRanges", "OrganismDbi", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "VariantAnnotation", "biovizBase", "ensembldb", "ggplot2", "gridExtra", "gtable", "reshape2", "rlang", "rtracklayer", "scales"]
},
"ggcyto": {
"name": "ggcyto",
"version": "1.38.0",
"sha256": "0gpqwg8f2pwb9z9rjdmiy6x60zry2wwlf5xq44scv5dm6l2jfapw",
"depends": ["RColorBrewer", "data_table", "flowCore", "flowWorkspace", "ggplot2", "gridExtra", "hexbin", "ncdfFlow", "plyr", "rlang", "scales"]
},
"ggkegg": {
"name": "ggkegg",
"version": "1.8.0",
"sha256": "1imcszvrg3z9vsn63hnsdwyl35dspvxvmjd9rfrgz6w8v677firx",
"depends": ["BiocFileCache", "XML", "data_table", "dplyr", "ggplot2", "ggraph", "gtable", "igraph", "magick", "patchwork", "shadowtext", "stringr", "tibble", "tidygraph"]
},
"ggmanh": {
"name": "ggmanh",
"version": "1.14.0",
"sha256": "0r9v6ss9hp9y729vcw9c4sw7diclv337z38hp9fxz4ys3vp68ck2",
"depends": ["RColorBrewer", "SeqArray", "dplyr", "gdsfmt", "ggplot2", "ggrepel", "magrittr", "paletteer", "pals", "rlang", "scales", "tidyr"]
},
"ggmsa": {
"name": "ggmsa",
"version": "1.16.0",
"sha256": "0wf0rvqn7q716hp3m53mc425rzjmhj14ajz0by3rx0ix357y7xg2",
"depends": ["Biostrings", "R4RNA", "RColorBrewer", "aplot", "dplyr", "ggforce", "ggfun", "ggplot2", "ggtree", "magrittr", "seqmagick", "tidyr"]
},
"ggsc": {
"name": "ggsc",
"version": "1.8.0",
"sha256": "1bxkf3blwvgpwa3s861i4mg6x6ny6kq27wgn9abpdi2k12545m8s",
"depends": ["RColorBrewer", "Rcpp", "RcppArmadillo", "RcppParallel", "Seurat", "SingleCellExperiment", "SummarizedExperiment", "cli", "dplyr", "ggfun", "ggplot2", "rlang", "scales", "scattermore", "tibble", "tidydr", "tidyr", "yulab_utils"]
},
"ggseqalign": {
"name": "ggseqalign",
"version": "1.4.0",
"sha256": "013a1gda7hwmyis0zs4ajaz42phwlnji2lqynasysy764nknlznh",
"depends": ["dplyr", "ggplot2", "pwalign"]
},
"ggspavis": {
"name": "ggspavis",
"version": "1.16.0",
"sha256": "1xnmajaxc1k3am1p2fkf56l6pdv5ayn0pqivyz3x7fp2yix0wxn4",
"depends": ["RColorBrewer", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "ggplot2", "ggrepel", "ggside", "scales"]
},
"ggtree": {
"name": "ggtree",
"version": "4.0.1",
"sha256": "0vk1l1jmw4acgmpmgcx0pz7j39yp391mba8q1xnc8rmlfw51qvxj",
"depends": ["ape", "aplot", "cli", "dplyr", "ggfun", "ggiraph", "ggplot2", "magrittr", "purrr", "rlang", "scales", "tidyr", "tidytree", "treeio", "yulab_utils"]
},
"ggtreeDendro": {
"name": "ggtreeDendro",
"version": "1.12.0",
"sha256": "0pc5lrc0p5d1yr6yrazz82z87h0zix8an19vjncw5pp3gyjs2z5g",
"depends": ["ggplot2", "ggtree", "tidytree"]
},
"ggtreeExtra": {
"name": "ggtreeExtra",
"version": "1.20.0",
"sha256": "086j86xxf8xn4kqkgs6b3r2zyrngi2inhhabj47c5mcyxy7cbddz",
"depends": ["cli", "ggnewscale", "ggplot2", "ggtree", "magrittr", "rlang", "tidytree"]
},
"ggtreeSpace": {
"name": "ggtreeSpace",
"version": "1.6.0",
"sha256": "0yy7hap224hznl4g9nj0bn0rf57snwbrw419b14l2h5rg5gi5fc5",
"depends": ["GGally", "ape", "dplyr", "ggplot2", "ggtree", "interp", "phytools", "rlang", "tibble", "tidyr", "tidyselect"]
},
"ginmappeR": {
"name": "ginmappeR",
"version": "1.6.0",
"sha256": "0x85rkhs46bln7bd51lz1vqx4nd3qg83vkvg1bnb9755k7rz3x58",
"depends": ["KEGGREST", "UniProt_ws", "XML", "cachem", "httr", "jsonlite", "memoise", "rentrez", "rvest"]
},
"glmGamPoi": {
"name": "glmGamPoi",
"version": "1.22.0",
"sha256": "1i9sy6a47ynb3lghi2mghk6mvgbr3kny6c3n208lxqb4b7si1f1z",
"depends": ["BiocGenerics", "DelayedArray", "DelayedMatrixStats", "HDF5Array", "Matrix", "MatrixGenerics", "Rcpp", "RcppArmadillo", "S4Vectors", "SingleCellExperiment", "SparseArray", "SummarizedExperiment", "assorthead", "beachmat", "matrixStats", "rlang", "vctrs"]
},
"glmSparseNet": {
"name": "glmSparseNet",
"version": "1.28.0",
"sha256": "0qxss4zfdds590ldfdrhn8c6brd9z8pknp462jw2p0bjz8wvm8lp",
"depends": ["Matrix", "MultiAssayExperiment", "SummarizedExperiment", "TCGAutils", "biomaRt", "checkmate", "dplyr", "forcats", "futile_logger", "ggplot2", "glmnet", "glue", "httr", "lifecycle", "readr", "rlang", "survminer"]
},
"globalSeq": {
"name": "globalSeq",
"version": "1.38.0",
"sha256": "0i6i0hj733z2d8xqwg1nm1dyp3h5p32rdxmnxp4qgzwk96vz8b51",
"depends": []
},
"globaltest": {
"name": "globaltest",
"version": "5.64.0",
"sha256": "064ffcfk9sxmjii1pyl5nsbdr116blvvi3l46chvrvfjjd5z8sfn",
"depends": ["AnnotationDbi", "Biobase", "annotate", "survival"]
},
"gmapR": {
"name": "gmapR",
"version": "1.51.1",
"sha256": "0y2gh8mqkdcciag09vb1fz9i32d8j3hj3frji7j644xpd2hr12ks",
"depends": ["BSgenome", "Biobase", "BiocGenerics", "BiocIO", "BiocParallel", "Biostrings", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "VariantAnnotation", "rtracklayer"]
},
"gmoviz": {
"name": "gmoviz",
"version": "1.22.0",
"sha256": "0ggy20alp14129d477zywhjj3jl8396wc1sfc8k0gb3hnzb08x9f",
"depends": ["BiocGenerics", "Biostrings", "ComplexHeatmap", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "circlize", "colorspace", "gridBase", "pracma", "rtracklayer"]
},
"goProfiles": {
"name": "goProfiles",
"version": "1.72.0",
"sha256": "0wkkcwr9cz0a2vlwal1i33zr1m5m0s8h9nal2jp97yhfr82c30hm",
"depends": ["AnnotationDbi", "Biobase", "CompQuadForm", "GO_db", "stringr"]
},
"goSTAG": {
"name": "goSTAG",
"version": "1.34.0",
"sha256": "1c1n7q1f52x6sd1l3772zq32bvkbwa4ffa82c09laca2hmydfaws",
"depends": ["AnnotationDbi", "GO_db", "biomaRt", "memoise"]
},
"goSorensen": {
"name": "goSorensen",
"version": "1.12.0",
"sha256": "0md7w06mlnalcfpmsg4b3x3cmvy8xx8smwvq2vfvp3fyfghx1q9y",
"depends": ["clusterProfiler", "goProfiles", "org_Hs_eg_db", "stringr"]
},
"goTools": {
"name": "goTools",
"version": "1.84.0",
"sha256": "01jgq12iskpdp8s4sf3ndk16n99ypwrfw61l8jjfvlla2nw73lpa",
"depends": ["AnnotationDbi", "GO_db"]
},
"goseq": {
"name": "goseq",
"version": "1.62.0",
"sha256": "1p8vbisgdv4cmb47kr6x7nycm3j9sf3y5ib6lcq2i9y0c49ddrz2",
"depends": ["AnnotationDbi", "BiasedUrn", "BiocGenerics", "GO_db", "GenomicFeatures", "Seqinfo", "geneLenDataBase", "mgcv", "rtracklayer"]
},
"gpls": {
"name": "gpls",
"version": "1.82.0",
"sha256": "0kn2vxsl379qh2gs7am46fzn2c44kgj46n6g49b94a7vgjrwm2qi",
"depends": []
},
"graper": {
"name": "graper",
"version": "1.26.0",
"sha256": "0n9z7ni769yylrq22dp2saka55ymm178ind9dvr7h3bhrb9v34kf",
"depends": ["BH", "Matrix", "Rcpp", "RcppArmadillo", "cowplot", "ggplot2", "matrixStats"]
},
"graph": {
"name": "graph",
"version": "1.88.0",
"sha256": "1sxn2h83j3qawp9jwpg63g50px2gk5dmlmdy6a7jwx3hb44sppbm",
"depends": ["BiocGenerics"]
},
"graphite": {
"name": "graphite",
"version": "1.56.0",
"sha256": "0481mc4h33n8kky5qph2isjibfclcc694k8pxlf6aijq6hbqxc78",
"depends": ["AnnotationDbi", "dir_expiry", "graph", "httr", "lifecycle", "purrr", "rappdirs", "rlang"]
},
"groHMM": {
"name": "groHMM",
"version": "1.44.0",
"sha256": "0xdma6zx4sdkqfbs4v8ipxa38xywmdlgbdmihl0zysp6nxmm1jvg",
"depends": ["GenomicAlignments", "GenomicRanges", "IRanges", "MASS", "S4Vectors", "Seqinfo", "rtracklayer"]
},
"gscreend": {
"name": "gscreend",
"version": "1.24.0",
"sha256": "0gf3mv57c4f93xq75fyd9xqzkwn8yrz5x4sxpr8f5bxxriwdyd55",
"depends": ["BiocParallel", "SummarizedExperiment", "fGarch", "nloptr"]
},
"gsean": {
"name": "gsean",
"version": "1.30.0",
"sha256": "07k0b722i33dyrw65iv0ami4kxjxd7gzcnrn10yk9yam187g0hnp",
"depends": ["PPInfer", "fgsea"]
},
"gtrellis": {
"name": "gtrellis",
"version": "1.42.0",
"sha256": "0lbqzdfz7ylw066ng01vvm5azvnjfxhhbfcjk6y0l5xbs2c5ckac",
"depends": ["GenomicRanges", "GetoptLong", "IRanges", "circlize"]
},
"gwascat": {
"name": "gwascat",
"version": "2.42.0",
"sha256": "1v5z4fmwgs3swvpa09y986sracz0nsggq8s9hp1nmwb9a9grw8px",
"depends": ["AnnotationDbi", "AnnotationHub", "BiocFileCache", "Biostrings", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "VariantAnnotation", "data_table", "readr", "snpStats", "tibble"]
},
"gwasurvivr": {
"name": "gwasurvivr",
"version": "1.28.0",
"sha256": "0p6h5594ysscazipf5va545mj36vkbw4dprqsqhg21ih411bqk9r",
"depends": ["GWASTools", "SNPRelate", "SummarizedExperiment", "VariantAnnotation", "matrixStats", "survival"]
},
"gypsum": {
"name": "gypsum",
"version": "1.6.0",
"sha256": "0wn6mxdkr1msys9n3799qplmvpr9b8qjzhw1magahndidsylz8pf",
"depends": ["filelock", "httr2", "jsonlite", "rappdirs"]
},
"h5mread": {
"name": "h5mread",
"version": "1.2.0",
"sha256": "01iykyb36cnzbs7xf3jcgnndnib4pk0w4wg8scy1rnagcy89yp2a",
"depends": ["BiocGenerics", "IRanges", "Rhdf5lib", "S4Arrays", "S4Vectors", "SparseArray", "rhdf5", "rhdf5filters"]
},
"h5vc": {
"name": "h5vc",
"version": "2.44.0",
"sha256": "0a2ali36kigkn65a5gb11xid2c28432l3hvdkjf27h4z7jl1cv16",
"depends": ["BatchJobs", "BiocParallel", "Biostrings", "GenomeInfoDb", "GenomicRanges", "IRanges", "Rhtslib", "Rsamtools", "S4Vectors", "abind", "ggplot2", "gridExtra", "h5vcData", "reshape", "rhdf5"]
},
"hapFabia": {
"name": "hapFabia",
"version": "1.52.0",
"sha256": "1asxg02xrvqsx1vnyh14nd3xfsk8q0fi95w65c97dknrnhy1c2wl",
"depends": ["Biobase", "fabia"]
},
"hdxmsqc": {
"name": "hdxmsqc",
"version": "1.6.0",
"sha256": "03r8k913p3f4024jr6r5nd872ixxqfkhwngi2g930vw4j53y04k3",
"depends": ["BiocStyle", "MsCoreUtils", "QFeatures", "S4Vectors", "Spectra", "dplyr", "ggplot2", "knitr", "tidyr"]
},
"heatmaps": {
"name": "heatmaps",
"version": "1.34.0",
"sha256": "1656vvcqjpiwibxqvlx0ysalnc53xifkh9ypb7j3prdpc7k243nx",
"depends": ["BiocGenerics", "Biostrings", "EBImage", "GenomicRanges", "IRanges", "KernSmooth", "Matrix", "RColorBrewer", "Seqinfo", "plotrix"]
},
"hermes": {
"name": "hermes",
"version": "1.14.0",
"sha256": "0ylqg4jhsv1qqd2663jskn2r1m6f79snx0pisn8i3p6yh7n2cpi8",
"depends": ["Biobase", "BiocGenerics", "ComplexHeatmap", "DESeq2", "EnvStats", "GenomicRanges", "IRanges", "MultiAssayExperiment", "R6", "Rdpack", "S4Vectors", "SummarizedExperiment", "assertthat", "biomaRt", "checkmate", "circlize", "dplyr", "edgeR", "forcats", "ggfortify", "ggplot2", "ggrepel", "limma", "magrittr", "matrixStats", "purrr", "rlang", "tidyr"]
},
"hicVennDiagram": {
"name": "hicVennDiagram",
"version": "1.8.0",
"sha256": "11fc1ykmk0g5gpjxi195hqw2cxn212asarmj0pjcvjzh30k4i12d",
"depends": ["ComplexUpset", "GenomicRanges", "IRanges", "InteractionSet", "S4Vectors", "Seqinfo", "eulerr", "ggplot2", "htmlwidgets", "reshape2", "rtracklayer", "svglite"]
},
"hierGWAS": {
"name": "hierGWAS",
"version": "1.40.0",
"sha256": "0l58pcyhgxnc56j9gbp6dlw97apa2r67xcvli76ldk1mwpf0hxnb",
"depends": ["fastcluster", "fmsb", "glmnet"]
},
"hierinf": {
"name": "hierinf",
"version": "1.28.0",
"sha256": "1k5i6k6wbz43mf7nsg48idykxr7mi42nc6qmsmpvcj863nkdhm89",
"depends": ["fmsb", "glmnet"]
},
"hmdbQuery": {
"name": "hmdbQuery",
"version": "1.30.0",
"sha256": "1zasi8mb3pi5yxz2w7v7b5zwmkb8syl0ir41gafz0mq9pab3yj3a",
"depends": ["S4Vectors", "XML"]
},
"hoodscanR": {
"name": "hoodscanR",
"version": "1.8.0",
"sha256": "1fxf2zixbcz5g6nncgkdbiz4gb4iv2d085jz1li8cd6l2fxsyab1",
"depends": ["ComplexHeatmap", "RANN", "Rcpp", "SpatialExperiment", "SummarizedExperiment", "circlize", "ggplot2", "knitr", "rlang", "rmarkdown", "scico"]
},
"hopach": {
"name": "hopach",
"version": "2.70.0",
"sha256": "00xbm6lld8w711x226rms020zpn0wi2ri7q59iwg4w4xmdjqq8xh",
"depends": ["Biobase", "BiocGenerics", "cluster"]
},
"hpar": {
"name": "hpar",
"version": "1.52.0",
"sha256": "1png19c1dr2banwc07azwz0rxrkw9820vkj8362syv4dryphx3c5",
"depends": ["ExperimentHub"]
},
"hummingbird": {
"name": "hummingbird",
"version": "1.20.0",
"sha256": "1aiv1aavc6al6hv05828alqmnf6q8af126aa3na3m0zvfjvaf2fa",
"depends": ["GenomicRanges", "IRanges", "Rcpp", "SummarizedExperiment"]
},
"hyperdraw": {
"name": "hyperdraw",
"version": "1.62.0",
"sha256": "07k1vkqilvy83ijawlw038dqq89plmjv5paz6k1mjif8f730lkgl",
"depends": ["Rgraphviz", "graph", "hypergraph"]
},
"hypergraph": {
"name": "hypergraph",
"version": "1.82.0",
"sha256": "0326ypzscnv2xpyvpigwsanp065wiply8w6ydg1gvryc1in5dlbm",
"depends": ["graph"]
},
"iASeq": {
"name": "iASeq",
"version": "1.54.0",
"sha256": "04rxy267kymkbiqjv818hhb8lxh1l4hk9pxw4psr0q527iz6rrj0",
"depends": []
},
"iBBiG": {
"name": "iBBiG",
"version": "1.54.0",
"sha256": "1m9kdnpa34a9y3sdh7a53clpq9zc4cl5zx7rnrsm0998bfrbwwpk",
"depends": ["ade4", "biclust", "xtable"]
},
"iBMQ": {
"name": "iBMQ",
"version": "1.50.0",
"sha256": "1n05qnr3kfnbm5ns2kich5n9xbhy7rhlyfwx001mbinhihwf7cyb",
"depends": ["Biobase", "ggplot2"]
},
"iCARE": {
"name": "iCARE",
"version": "1.38.0",
"sha256": "0rj33c22rssznqi8jayg2lnhx2adwina6ic2nswmq1kvd9zcdf6x",
"depends": ["Hmisc", "gtools", "plotrix"]
},
"iCNV": {
"name": "iCNV",
"version": "1.30.0",
"sha256": "0hkxikinkbpdgg7l7n0v0lyazd09i2n92dx0gakfvrd7bn3v6dql",
"depends": ["CODEX", "data_table", "dplyr", "fields", "ggplot2", "rlang", "tidyr", "truncnorm"]
},
"iCOBRA": {
"name": "iCOBRA",
"version": "1.38.0",
"sha256": "0fyls8ckgbkh71ik9m475nlf51p1giby6d5qrrjjzg59bwhbksjm",
"depends": ["DT", "ROCR", "UpSetR", "dplyr", "ggplot2", "limma", "reshape2", "rlang", "scales", "shiny", "shinyBS", "shinydashboard"]
},
"iCheck": {
"name": "iCheck",
"version": "1.40.0",
"sha256": "0f9vhavj849syn1kdsiij120s3w97y7sqiv4qnpyp5r1s4k75bfl",
"depends": ["Biobase", "GeneSelectMMD", "MASS", "affy", "gplots", "limma", "lmtest", "lumi", "preprocessCore", "randomForest", "rgl", "scatterplot3d"]
},
"iChip": {
"name": "iChip",
"version": "1.64.0",
"sha256": "1hkgxj54nw4g3fal6r94nkr3j4ixv0c5wi6g2y7hx5bx6mmablmj",
"depends": ["limma"]
},
"iClusterPlus": {
"name": "iClusterPlus",
"version": "1.46.0",
"sha256": "1bqi0hckfphs7ixb0mh67a8q9q43fxs3n36bvgrhgpari4gl9axz",
"depends": []
},
"iGC": {
"name": "iGC",
"version": "1.40.0",
"sha256": "0jli4qyzyypkk43kk58122dmibjnb09gpks1yfgqpqczna2h46xc",
"depends": ["data_table", "plyr"]
},
"iModMix": {
"name": "iModMix",
"version": "1.0.0",
"sha256": "0kif27wq4m1qsrv34zla4w0wlmdlsi6z8v54mz10p101lrvppnfk",
"depends": ["ComplexHeatmap", "DT", "ExperimentHub", "RColorBrewer", "SummarizedExperiment", "WGCNA", "config", "corrplot", "cowplot", "dplyr", "dynamicTreeCut", "ggplot2", "glassoFast", "golem", "httr", "iModMixData", "impute", "purrr", "shiny", "shinyBS", "stringr", "tidyr", "visNetwork"]
},
"iSEE": {
"name": "iSEE",
"version": "2.22.0",
"sha256": "1g4mcvc7qb04cy307lhd11pxshq81s84b87dcyylqasibhxmbjyp",
"depends": ["BiocGenerics", "ComplexHeatmap", "DT", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "circlize", "colourpicker", "ggplot2", "ggrepel", "igraph", "listviewer", "mgcv", "rintrojs", "shiny", "shinyAce", "shinyWidgets", "shinydashboard", "shinyjs", "vipor", "viridisLite"]
},
"iSEEde": {
"name": "iSEEde",
"version": "1.8.0",
"sha256": "0csm53kjgdg6ca42w36gfcs2c8x4bvl06ngnhqaa1hg9bx3nn4bl",
"depends": ["DESeq2", "S4Vectors", "SummarizedExperiment", "edgeR", "iSEE", "shiny"]
},
"iSEEfier": {
"name": "iSEEfier",
"version": "1.6.0",
"sha256": "0vqrm2zm8dmrrgj7lh8m8kx6h97ii6f39m3mi7i2h1nklihkz54s",
"depends": ["BiocBaseUtils", "SingleCellExperiment", "SummarizedExperiment", "ggplot2", "iSEE", "iSEEu", "igraph", "rlang", "visNetwork"]
},
"iSEEhex": {
"name": "iSEEhex",
"version": "1.12.0",
"sha256": "1dm7j0159c52a4smhwq18da78fl8rfzibvr5dq2rmdgfvk3xg27p",
"depends": ["SummarizedExperiment", "ggplot2", "hexbin", "iSEE", "shiny"]
},
"iSEEhub": {
"name": "iSEEhub",
"version": "1.12.0",
"sha256": "0gjz3r0slzzdsdycnq6vlcai4l3qmw4xx25b0id4va5224j1pbld",
"depends": ["AnnotationHub", "BiocManager", "DT", "ExperimentHub", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "iSEE", "rintrojs", "shiny", "shinydashboard", "shinyjs"]
},
"iSEEindex": {
"name": "iSEEindex",
"version": "1.8.0",
"sha256": "1id3hbc24lvk4lhfm2l75n0hd1l37hl6v70cbbb8kh6kdfmhidy3",
"depends": ["BiocFileCache", "DT", "SingleCellExperiment", "SummarizedExperiment", "iSEE", "paws_storage", "rintrojs", "shiny", "shinydashboard", "shinyjs", "stringr", "urltools"]
},
"iSEEpathways": {
"name": "iSEEpathways",
"version": "1.8.0",
"sha256": "06dy4s9sn2pm2q8xh20p83nv1km1f6xcp3radxq8cwy4jw3j5rzw",
"depends": ["S4Vectors", "SummarizedExperiment", "ggplot2", "iSEE", "shiny", "shinyWidgets"]
},
"iSEEtree": {
"name": "iSEEtree",
"version": "1.4.0",
"sha256": "1j5p859lsjjv831wkhdmkwhw61g3yw1ynayz1ww8vbh0b3kchqa0",
"depends": ["S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "TreeSummarizedExperiment", "ape", "ggplot2", "ggtree", "iSEE", "mia", "miaViz", "purrr", "shiny", "shinyWidgets", "tidygraph"]
},
"iSEEu": {
"name": "iSEEu",
"version": "1.22.0",
"sha256": "1gdbqff3j3s8793wn26c59zms1vahvskvhka1rzp5fqd7i09a9id",
"depends": ["DT", "IRanges", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "colourpicker", "ggplot2", "iSEE", "iSEEhex", "shiny", "shinyAce"]
},
"iSeq": {
"name": "iSeq",
"version": "1.62.0",
"sha256": "118g683pbn713g5iqrdsipbfnwi73kn80pq0ir8ignx7jn36vp12",
"depends": []
},
"iasva": {
"name": "iasva",
"version": "1.28.0",
"sha256": "0lkyfgwr2prar7gzf1dn8a8q81d3al2hq9pyhjcn7ghpjpwrw1mx",
"depends": ["BiocParallel", "SummarizedExperiment", "cluster", "irlba"]
},
"ibh": {
"name": "ibh",
"version": "1.58.0",
"sha256": "0nljjvapwfdy07w3zg35znyh2k645bn8psfnl84dxr4hmq3g51ra",
"depends": ["simpIntLists"]
},
"icetea": {
"name": "icetea",
"version": "1.28.0",
"sha256": "0f0w294bqmrh4a5gsyfiv9228734cv5ybskazgzsnjvbndlhk69p",
"depends": ["BiocGenerics", "BiocParallel", "Biostrings", "DESeq2", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "ShortRead", "SummarizedExperiment", "TxDb_Dmelanogaster_UCSC_dm6_ensGene", "VariantAnnotation", "csaw", "edgeR", "ggplot2", "limma", "rtracklayer"]
},
"ideal": {
"name": "ideal",
"version": "2.4.0",
"sha256": "1h8yvw4rwsbv30vny8rw6df99v5mj7l6cbm5fgxgl29hlb1hcd6j",
"depends": ["AnnotationDbi", "BiocParallel", "DESeq2", "DT", "GO_db", "GOstats", "GenomicRanges", "IHW", "IRanges", "S4Vectors", "SummarizedExperiment", "UpSetR", "base64enc", "dplyr", "ggplot2", "ggrepel", "goseq", "gplots", "heatmaply", "knitr", "limma", "mosdef", "pheatmap", "plotly", "rentrez", "rintrojs", "rlang", "rmarkdown", "shiny", "shinyAce", "shinyBS", "shinydashboard", "stringr", "topGO"]
},
"idiogram": {
"name": "idiogram",
"version": "1.86.0",
"sha256": "0d9m9x7gsx1ywcf1pk7ssp4gal29i833qjaqq4bx1ihrlr75nf06",
"depends": ["Biobase", "annotate", "plotrix"]
},
"idpr": {
"name": "idpr",
"version": "1.20.0",
"sha256": "0mbk2zpmjksp6a59wm4bhf9k9v9zblyydjj231zpga6vslybx3g3",
"depends": ["Biostrings", "dplyr", "ggplot2", "jsonlite", "magrittr", "plyr", "rlang"]
},
"idr2d": {
"name": "idr2d",
"version": "1.24.0",
"sha256": "0vm8ax9f6q8zzwggrcxy5gf62ikfhlp2mybr9zg74w99zgbyabx6",
"depends": ["GenomeInfoDb", "GenomicRanges", "IRanges", "dplyr", "futile_logger", "ggplot2", "idr", "magrittr", "reticulate", "scales", "stringr"]
},
"igblastr": {
"name": "igblastr",
"version": "1.0.0",
"sha256": "1vjlqjiczdfq0wdbjjb3knpa3xqibqz08r06qyqvnvvs533axl5r",
"depends": ["Biostrings", "GenomeInfoDb", "IRanges", "R_utils", "S4Vectors", "curl", "httr", "jsonlite", "rvest", "tibble", "xml2", "xtable"]
},
"igvR": {
"name": "igvR",
"version": "1.30.0",
"sha256": "0ia9vx40djl3lmlpirp7knjygd2zsimpn471ydjqw09bamxyin8k",
"depends": ["BiocGenerics", "BrowserViz", "GenomicAlignments", "GenomicRanges", "RColorBrewer", "VariantAnnotation", "httpuv", "httr", "rtracklayer"]
},
"igvShiny": {
"name": "igvShiny",
"version": "1.6.0",
"sha256": "05xd8ydk4z4xqgdw626jk3cfnbk9f9nv6cv6n4i0wg9vy6r87wza",
"depends": ["BiocGenerics", "GenomeInfoDbData", "GenomicRanges", "checkmate", "futile_logger", "htmlwidgets", "httr", "jsonlite", "randomcoloR", "shiny"]
},
"illuminaio": {
"name": "illuminaio",
"version": "0.52.0",
"sha256": "0hcn43ipy0dijr3kqdcn8hpv3a5y1xmg8d7aa2hd7i7ipjh5bfhf",
"depends": ["base64"]
},
"imageTCGA": {
"name": "imageTCGA",
"version": "1.2.0",
"sha256": "15wd10s1xcmkfqyd92m25lgcy6hnizrhvl7vnajgrp0g512s7jg6",
"depends": ["DT", "bsicons", "bslib", "clipr", "dplyr", "ggplot2", "leaflet", "rlang", "shiny", "tidyr", "viridis"]
},
"imcRtools": {
"name": "imcRtools",
"version": "1.16.0",
"sha256": "07a5p6r5rycp55gs6iaqkqy7wgvajs5x0806qc3fidg0v118qfp0",
"depends": ["BiocNeighbors", "BiocParallel", "DT", "EBImage", "MatrixGenerics", "RTriangle", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "abind", "concaveman", "cytomapper", "data_table", "distances", "dplyr", "ggplot2", "ggraph", "igraph", "magrittr", "pheatmap", "readr", "rlang", "scuttle", "sf", "stringr", "tidygraph", "tidyselect", "viridis", "vroom"]
},
"immApex": {
"name": "immApex",
"version": "1.4.0",
"sha256": "0xwj70fgfhqilc4clm54lj7h1q1742339z44nwbl1sjh049x388f",
"depends": ["Matrix", "Rcpp", "SingleCellExperiment", "hash", "httr", "matrixStats", "rvest", "stringr"]
},
"immunoClust": {
"name": "immunoClust",
"version": "1.42.0",
"sha256": "1l6iyf23kvk02zl49hq2y761hg102gv4vf6xzgck6xgp80d2cl9d",
"depends": ["flowCore", "lattice"]
},
"immunogenViewer": {
"name": "immunogenViewer",
"version": "1.4.0",
"sha256": "03k4sc032nn5siciv41310hcfs7dfjgps50jprpgjbmx3z2zvwgj",
"depends": ["UniProt_ws", "ggplot2", "httr", "jsonlite", "patchwork"]
},
"immunotation": {
"name": "immunotation",
"version": "1.18.0",
"sha256": "031gl7sckwkrdhnzbadnnlxqfi48nc2wm9x2zdzw6qds39hg8ay1",
"depends": ["curl", "ggplot2", "maps", "ontologyIndex", "readr", "rlang", "rvest", "stringr", "tidyr", "xml2"]
},
"impute": {
"name": "impute",
"version": "1.84.0",
"sha256": "1lcyfwgs7pq1qwnglgqp7gs3rxymxgv08jmgq56xd1qjr9rz4dl6",
"depends": []
},
"infercnv": {
"name": "infercnv",
"version": "1.26.0",
"sha256": "1gkgvkj06kpqwl573d5l8d9bsdp7nq61m688ma9d2fx6wg4a9r7l",
"depends": ["BiocGenerics", "HiddenMarkov", "Matrix", "RANN", "RColorBrewer", "Seurat", "SingleCellExperiment", "SummarizedExperiment", "ape", "argparse", "caTools", "coda", "coin", "digest", "doParallel", "dplyr", "edgeR", "fastcluster", "fitdistrplus", "foreach", "futile_logger", "future", "ggplot2", "gplots", "gridExtra", "igraph", "parallelDist", "phyclust", "reshape2", "rjags", "tidyr"]
},
"infinityFlow": {
"name": "infinityFlow",
"version": "1.20.0",
"sha256": "010wv8nm1hjpr7f2y1z3bv7mbjbzlr84id7qmmhgkp6b0gmkwmgp",
"depends": ["Biobase", "flowCore", "generics", "gtools", "matlab", "pbapply", "png", "raster", "uwot", "xgboost"]
},
"intansv": {
"name": "intansv",
"version": "1.50.0",
"sha256": "1zmb28d8zkg58d3yrbgj9aqac6zyr9l03gryyxsz2yadwkngpyh4",
"depends": ["BiocGenerics", "GenomicRanges", "IRanges", "ggbio", "plyr"]
},
"interacCircos": {
"name": "interacCircos",
"version": "1.20.0",
"sha256": "12nc76sgidbak7dwhjxrzjzc07yi6jn44g7zvaq1mld93i0hds08",
"depends": ["RColorBrewer", "htmlwidgets", "plyr"]
},
"interactiveDisplay": {
"name": "interactiveDisplay",
"version": "1.48.0",
"sha256": "02amr55nk6jx059a0shrwpnzkgcdfsr2x8k975j7x9y0nwsj6l94",
"depends": ["AnnotationDbi", "BiocGenerics", "Category", "RColorBrewer", "XML", "ggplot2", "gridSVG", "interactiveDisplayBase", "plyr", "reshape2", "shiny"]
},
"interactiveDisplayBase": {
"name": "interactiveDisplayBase",
"version": "1.48.0",
"sha256": "0slmb7cd9sn0146r1ad0cnaiihh7vh22fx41w7zdnq8c5nykkhad",
"depends": ["BiocGenerics", "DT", "shiny"]
},
"ipdDb": {
"name": "ipdDb",
"version": "1.28.0",
"sha256": "13w0zgpcfaj2mradn0s95yszlf97b4sp7k4zzjjzfxfzi1xn8q7v",
"depends": ["AnnotationDbi", "AnnotationHub", "Biostrings", "DBI", "GenomicRanges", "IRanges", "RSQLite", "assertthat"]
},
"iscream": {
"name": "iscream",
"version": "1.0.0",
"sha256": "19azxk53w3nnbjh54hzmznk1ilgck5i6m1m47wl7456fwkay6d3x",
"depends": ["Matrix", "Rcpp", "RcppArmadillo", "RcppProgress", "RcppSpdlog", "Rhtslib", "data_table", "parallelly", "pbapply", "stringfish"]
},
"islify": {
"name": "islify",
"version": "1.2.0",
"sha256": "0n8585c27fl6zbhwl12nk8n9cc8vchp43rkh2vfmp42w6nslfcm5",
"depends": ["Matrix", "RBioFormats", "abind", "autothresholdr", "dbscan", "png", "tiff"]
},
"isobar": {
"name": "isobar",
"version": "1.56.0",
"sha256": "1yckivblgrd80j3i186raawlahdm8akkrmmjc8xckcbld4afls0v",
"depends": ["Biobase", "biomaRt", "distr", "ggplot2", "plyr"]
},
"iterativeBMA": {
"name": "iterativeBMA",
"version": "1.68.0",
"sha256": "1ja588rr6zmghfgi5f4r7hqnh94siw72n90z76wdivw22y90v57p",
"depends": ["BMA", "Biobase", "leaps"]
},
"iterativeBMAsurv": {
"name": "iterativeBMAsurv",
"version": "1.68.0",
"sha256": "0gqnsy9q43h7brc47xsvxrwmnagvi91pici0xxjsjhbvby5z76qg",
"depends": ["BMA", "leaps", "survival"]
},
"ivygapSE": {
"name": "ivygapSE",
"version": "1.32.0",
"sha256": "0b9y6iznlpf77dy61hrnz6nhcsr2h8hzw65waqwwwvbwh61n69z8",
"depends": ["S4Vectors", "SummarizedExperiment", "UpSetR", "ggplot2", "hwriter", "plotly", "shiny", "survival", "survminer"]
},
"jazzPanda": {
"name": "jazzPanda",
"version": "1.2.0",
"sha256": "0bkzi2x4xlaqwn1wjrkmf4vbnqbcqkyvs9mwkxrh5rwg8dq1znw3",
"depends": ["BiocParallel", "BumpyMatrix", "SpatialExperiment", "caret", "doParallel", "dplyr", "foreach", "glmnet", "magrittr", "spatstat_geom"]
},
"karyoploteR": {
"name": "karyoploteR",
"version": "1.36.0",
"sha256": "0ymrs6mf0sxfczyxyy8nicg5cir7vz4srl2rjdz7h3937rz965yh",
"depends": ["AnnotationDbi", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "VariantAnnotation", "bamsignals", "bezier", "biovizBase", "digest", "memoise", "regioneR", "rtracklayer"]
},
"katdetectr": {
"name": "katdetectr",
"version": "1.12.0",
"sha256": "1w1wj2mja9wvlq8zsyc9bbnqsfp8hbi1ga792br15gc2dmhdnajx",
"depends": ["BSgenome", "BSgenome_Hsapiens_UCSC_hg19", "BSgenome_Hsapiens_UCSC_hg38", "Biobase", "BiocParallel", "GenomeInfoDb", "GenomicRanges", "IRanges", "Rdpack", "S4Vectors", "VariantAnnotation", "changepoint", "changepoint_np", "checkmate", "dplyr", "ggplot2", "ggtext", "maftools", "plyranges", "rlang", "scales", "tibble", "tidyr"]
},
"kebabs": {
"name": "kebabs",
"version": "1.44.0",
"sha256": "0wkyn73bcvqdljfscdjvjf3z3997k6crr26q38n8g3wd8x3yd672",
"depends": ["Biostrings", "IRanges", "LiblineaR", "Matrix", "Rcpp", "S4Vectors", "XVector", "apcluster", "e1071", "kernlab"]
},
"keggorthology": {
"name": "keggorthology",
"version": "2.62.0",
"sha256": "01qnwfqqxd741py39qi90dm46i9fvhbdhwvvzirypigy3v1mnlkw",
"depends": ["AnnotationDbi", "DBI", "graph", "hgu95av2_db"]
},
"kissDE": {
"name": "kissDE",
"version": "1.30.0",
"sha256": "1i7s9nf8vdcm08805njbz6aqy77k7rir0sdq10jc0kk4qvfd857m",
"depends": ["Biobase", "DESeq2", "DSS", "DT", "ade4", "aods3", "doParallel", "factoextra", "foreach", "ggplot2", "gplots", "matrixStats", "shiny", "shinycssloaders"]
},
"kmcut": {
"name": "kmcut",
"version": "1.4.0",
"sha256": "0kbzkskb4y6bq9hcq68znl3y3g00inwb6sq0wsqkb6rpdsd3lh06",
"depends": ["S4Vectors", "SummarizedExperiment", "doParallel", "foreach", "pracma", "survival"]
},
"knowYourCG": {
"name": "knowYourCG",
"version": "1.6.0",
"sha256": "0z3xy1jhm4swzjvairkrxb8z9qqmlrjya8ivsd4jq8jvmawq9wjh",
"depends": ["GenomicRanges", "IRanges", "S4Vectors", "dplyr", "ggplot2", "ggrepel", "magrittr", "reshape2", "rlang", "sesameData", "stringr", "tibble", "wheatmap"]
},
"koinar": {
"name": "koinar",
"version": "1.4.0",
"sha256": "1fdk46bc7c42jdlqij7f0b8rq067pgr3dmvv9fg4n1410irlwd0c",
"depends": ["httr", "jsonlite"]
},
"ldblock": {
"name": "ldblock",
"version": "1.40.0",
"sha256": "1v47yvbcpcf9z06gfmjsmxrf06pn57fsbmjshq0ypg5p3c3jn81p",
"depends": ["BiocGenerics", "Matrix", "Seqinfo", "httr", "rlang"]
},
"lefser": {
"name": "lefser",
"version": "1.20.0",
"sha256": "14gmghf65m7s6x6l5nq1bmmfwx76k4kkmvvvx0p6r4ycpk39rccm",
"depends": ["BiocGenerics", "MASS", "S4Vectors", "SummarizedExperiment", "ape", "coin", "dplyr", "forcats", "ggplot2", "ggrepel", "ggtree", "mia", "purrr", "stringr", "testthat", "tibble", "tidyr", "tidyselect", "treeio"]
},
"lemur": {
"name": "lemur",
"version": "1.8.0",
"sha256": "0v4wcvpj6gdz0qnw72dr6g2bw9nbfr0bfjpn04f7pliz7vnhm568",
"depends": ["BiocGenerics", "BiocNeighbors", "DelayedMatrixStats", "HDF5Array", "Matrix", "MatrixGenerics", "Rcpp", "RcppArmadillo", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "glmGamPoi", "harmony", "irlba", "limma", "matrixStats", "rlang", "vctrs"]
},
"les": {
"name": "les",
"version": "1.60.0",
"sha256": "16n5fbifgikh2knjja6a4yqmwy14qxlqcyscs1a8dhs74fz9nyai",
"depends": ["RColorBrewer", "boot", "fdrtool", "gplots"]
},
"levi": {
"name": "levi",
"version": "1.28.0",
"sha256": "0n31dqr03nc1b9kri8jjh8k19yny83jvv3y8x6fya12gm3vqa124",
"depends": ["DT", "RColorBrewer", "Rcpp", "colorspace", "dplyr", "ggplot2", "httr", "igraph", "knitr", "reshape2", "rmarkdown", "shiny", "shinydashboard", "shinyjs", "testthat", "xml2"]
},
"lfa": {
"name": "lfa",
"version": "2.10.0",
"sha256": "0hfagl99sf92000ng0wcn88sblzb64mr8b7kfi4zz2q79n9l8b49",
"depends": ["RSpectra", "corpcor"]
},
"limma": {
"name": "limma",
"version": "3.66.0",
"sha256": "1901p5k4wb7jaifdq8gybiw1sihvr7v3gnf5l4484wrhf2zl3fnq",
"depends": ["statmod"]
},
"limmaGUI": {
"name": "limmaGUI",
"version": "1.86.0",
"sha256": "1ik0wadac2yvmrcvqk25irmlx0qb8hwlj06lqai2kvnz1x2drfdc",
"depends": ["R2HTML", "limma", "tkrplot", "xtable"]
},
"limpa": {
"name": "limpa",
"version": "1.2.0",
"sha256": "105gcsf42p91xx213xrfqiywk9hvh9j3dy9bdnp9kmk0ncv4489a",
"depends": ["data_table", "limma", "statmod"]
},
"limpca": {
"name": "limpca",
"version": "1.6.0",
"sha256": "0820zpw7p18dha8bypvmxck5c8wqjjm0s9l1wycn01g6jidkxizl",
"depends": ["S4Vectors", "SummarizedExperiment", "doParallel", "dplyr", "ggplot2", "ggrepel", "ggsci", "plyr", "reshape2", "stringr", "tibble", "tidyr", "tidyverse"]
},
"lineagespot": {
"name": "lineagespot",
"version": "1.14.0",
"sha256": "1m0xc2i611py0q5293jp998z7x3bznfzx3p30fylv7sr5vwa98xb",
"depends": ["MatrixGenerics", "SummarizedExperiment", "VariantAnnotation", "data_table", "httr", "stringr"]
},
"linkSet": {
"name": "linkSet",
"version": "1.0.0",
"sha256": "1rsivkr48fpspqh4771i7irl1n0bpaaf3nkm82gr9pxp293rhgz3",
"depends": ["AnnotationDbi", "BiocGenerics", "DBI", "GenomeInfoDb", "GenomicRanges", "IRanges", "InteractionSet", "MASS", "Organism_dplyr", "S4Vectors", "data_table", "doParallel", "foreach", "ggplot2", "iterators", "patchwork", "rlang", "scales"]
},
"lionessR": {
"name": "lionessR",
"version": "1.24.0",
"sha256": "077j3fh2i2ikkpaaxkf9y1cc4kbii83x0b7fxnpps69d018hc9fp",
"depends": ["S4Vectors", "SummarizedExperiment"]
},
"lipidr": {
"name": "lipidr",
"version": "2.24.0",
"sha256": "1hjwglxngn4b3xss702cpfq05q27bk6jkg7sdxhpcxj07976mpgw",
"depends": ["S4Vectors", "SummarizedExperiment", "data_table", "dplyr", "fgsea", "forcats", "ggplot2", "imputeLCMD", "limma", "magrittr", "rlang", "ropls", "tidyr"]
},
"lisaClust": {
"name": "lisaClust",
"version": "1.18.0",
"sha256": "1c3zx3s3mv980gy9s2n7763q5sas552msvgx8x4dmik569g6kv08",
"depends": ["BiocGenerics", "BiocParallel", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "class", "concaveman", "data_table", "dplyr", "ggplot2", "lifecycle", "pheatmap", "purrr", "rlang", "simpleSeg", "spatstat_explore", "spatstat_geom", "spatstat_random", "spicyR", "tidyr"]
},
"lmdme": {
"name": "lmdme",
"version": "1.52.0",
"sha256": "15a9wzz3rhwdvv8wvpfm8v2c4casa9qj0m162hrz6dnc07mwxnnj",
"depends": ["limma", "pls", "stemHypoxia"]
},
"loci2path": {
"name": "loci2path",
"version": "1.30.0",
"sha256": "1384sfssk8xv28g7vjib3qjswq58cqnzwnlxyrj1yasj7aid2r0n",
"depends": ["BiocParallel", "GenomicRanges", "RColorBrewer", "S4Vectors", "data_table", "pheatmap", "wordcloud"]
},
"logicFS": {
"name": "logicFS",
"version": "2.30.0",
"sha256": "0bg85d0kmzwyviywmrwvdn6qczajqzbzzzkwfawzgmp5p65ssgfk",
"depends": ["LogicReg", "mcbiopi", "survival"]
},
"looking4clusters": {
"name": "looking4clusters",
"version": "1.0.0",
"sha256": "1982qhk0zj9q7wxzd3qflwcv71z8bz3f3zn4yc72zqpdx7hf80z8",
"depends": ["BiocBaseUtils", "SingleCellExperiment", "SummarizedExperiment", "jsonlite"]
},
"lpNet": {
"name": "lpNet",
"version": "2.42.0",
"sha256": "027d9iiqrxfmr86hnvnfc3g5bk23qnly05xz0akxx1yrvmka369q",
"depends": ["KEGGgraph", "lpSolve"]
},
"lpsymphony": {
"name": "lpsymphony",
"version": "1.38.0",
"sha256": "0l3zf7f9agkwcm4xbnws7ld77w7fiqx26qjh5rzyvvzprb65xiax",
"depends": []
},
"lumi": {
"name": "lumi",
"version": "2.62.0",
"sha256": "0m20f9399wdf778kgmgdf5fc4axbbq8shynrwjraa0smlr5zg6zy",
"depends": ["AnnotationDbi", "Biobase", "DBI", "GenomicFeatures", "GenomicRanges", "KernSmooth", "MASS", "RSQLite", "affy", "annotate", "lattice", "methylumi", "mgcv", "nleqslv", "preprocessCore"]
},
"m6Aboost": {
"name": "m6Aboost",
"version": "1.16.0",
"sha256": "0vldnbc56w2mv7c994lwydgh5ij3bi85ws7pa1dqvn1fkvyf7r0v",
"depends": ["BSgenome", "Biostrings", "ExperimentHub", "GenomicRanges", "IRanges", "S4Vectors", "adabag", "dplyr", "rtracklayer"]
},
"mBPCR": {
"name": "mBPCR",
"version": "1.64.0",
"sha256": "0xl7si4d3r3akfqym9v2kxrsji1gzdm6wlyan1lclqjdb3qlwai9",
"depends": ["Biobase", "GWASTools", "oligoClasses"]
},
"maCorrPlot": {
"name": "maCorrPlot",
"version": "1.80.0",
"sha256": "0yppp6dcrnxfi3kb37x8zkkhz93bm84svfpbs39v5q1h5qcrn7kn",
"depends": ["lattice"]
},
"maPredictDSC": {
"name": "maPredictDSC",
"version": "1.48.0",
"sha256": "1kqxwqpm82457bjswmgkc3ycda0j7fnknaa74v5ghl7lsp267np0",
"depends": ["AnnotationDbi", "LungCancerACvsSCCGEO", "MASS", "ROC", "ROCR", "affy", "caret", "class", "e1071", "gcrma", "hgu133plus2_db", "limma"]
},
"maSigPro": {
"name": "maSigPro",
"version": "1.82.0",
"sha256": "13l7nasczy4nyqwyrvcw3ki575phjz7rcc4127qvkx0cbxkvmkha",
"depends": ["Biobase", "MASS", "mclust", "venn"]
},
"maaslin3": {
"name": "maaslin3",
"version": "1.2.0",
"sha256": "0dlr8k9h6m95six3sbinczrvf9778qba0bf1gng51062zhw0hkdc",
"depends": ["BiocGenerics", "RColorBrewer", "SummarizedExperiment", "TreeSummarizedExperiment", "dplyr", "ggnewscale", "ggplot2", "lme4", "lmerTest", "logging", "multcomp", "optparse", "patchwork", "pbapply", "plyr", "rlang", "scales", "survival", "tibble"]
},
"made4": {
"name": "made4",
"version": "1.84.0",
"sha256": "16lcqxwafjmsslydxn6jd4jyvapbky8alsqdnc7bh3lmlmz3kv8v",
"depends": ["Biobase", "RColorBrewer", "SummarizedExperiment", "ade4", "gplots", "scatterplot3d"]
},
"maftools": {
"name": "maftools",
"version": "2.26.0",
"sha256": "0s9a119rrk0l4p8vq6bbg2b9m465ihkdhxiv64my77a4f93i31n1",
"depends": ["DNAcopy", "RColorBrewer", "Rhtslib", "data_table", "pheatmap", "survival"]
},
"magpie": {
"name": "magpie",
"version": "1.10.0",
"sha256": "1vcv4xn55x8m08f8krrpn1ap22f9247gs7817p8bqm58lxlj9r05",
"depends": ["AnnotationDbi", "BiocParallel", "DESeq2", "GenomicFeatures", "GenomicRanges", "IRanges", "Matrix", "RColorBrewer", "Rsamtools", "S4Vectors", "TRESS", "aod", "matrixStats", "openxlsx", "reshape2", "rtracklayer"]
},
"magrene": {
"name": "magrene",
"version": "1.12.0",
"sha256": "0fn60g28m839kmrnvdzh6ywgi72d4yww0z824i1v9z6v7hjjmn0d",
"depends": ["BiocParallel"]
},
"makecdfenv": {
"name": "makecdfenv",
"version": "1.86.0",
"sha256": "1sxx9986nv9bpwxp3gpxfbk7vagqig914cds12bfvjyfxwg49wfz",
"depends": ["Biobase", "affy", "affyio"]
},
"mapscape": {
"name": "mapscape",
"version": "1.34.0",
"sha256": "1rx81aasdi1hg2a3ywqczjgnwrz1axdfkpn91yz2qrj9v7d6zcdi",
"depends": ["base64enc", "htmlwidgets", "jsonlite", "stringr"]
},
"mariner": {
"name": "mariner",
"version": "1.10.0",
"sha256": "0i2y0q4icmbj7z7hb1qjrhxj7lg0k3l2fl03125z0hi0d8pb0qfq",
"depends": ["BiocGenerics", "BiocManager", "BiocParallel", "DelayedArray", "GenomeInfoDb", "GenomicRanges", "HDF5Array", "IRanges", "InteractionSet", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "abind", "assertthat", "colourvalues", "data_table", "dbscan", "glue", "magrittr", "plotgardener", "plyranges", "progress", "purrr", "rhdf5", "rlang", "strawr"]
},
"markeR": {
"name": "markeR",
"version": "1.0.0",
"sha256": "1k51rp13y8cq0p0kxsbzcvz1dmarw02ifvf784nq2d1a1v7qzda2",
"depends": ["ComplexHeatmap", "RColorBrewer", "circlize", "edgeR", "effectsize", "fgsea", "ggh4x", "ggplot2", "ggpubr", "ggrepel", "gridExtra", "limma", "msigdbr", "pROC", "reshape2", "rstatix", "scales", "tibble"]
},
"marr": {
"name": "marr",
"version": "1.20.0",
"sha256": "1q89n1pzzf5w742aqgcygcid0dnx8vn8z1ygkl1q9ldpdyanpmg0",
"depends": ["Rcpp", "S4Vectors", "SummarizedExperiment", "dplyr", "ggplot2", "magrittr", "rlang"]
},
"marray": {
"name": "marray",
"version": "1.88.0",
"sha256": "01zv8fx8yf1i8zk3mbfzygm3ys8gfrbfir8bbki08n8zk8bxj1r8",
"depends": ["limma"]
},
"martini": {
"name": "martini",
"version": "1.30.0",
"sha256": "1j44n3qi1gls2dn8zhx8p8k18z95bqnmi6a88divl2xlxv9q520q",
"depends": ["Matrix", "Rcpp", "RcppEigen", "igraph", "memoise", "snpStats"]
},
"maser": {
"name": "maser",
"version": "1.28.0",
"sha256": "0h41vajx7dvacp62bl8fab9zmv6fhnzjwdprvh0lrg26j7zivk9i",
"depends": ["BiocGenerics", "DT", "GenomicRanges", "Gviz", "IRanges", "Seqinfo", "data_table", "dplyr", "ggplot2", "reshape2", "rtracklayer"]
},
"maskBAD": {
"name": "maskBAD",
"version": "1.54.0",
"sha256": "0fcbj4v8k5na9iina6458ngk79mq3q147g6x5yj3k65gyy6ik0i7",
"depends": ["affy", "gcrma"]
},
"massiR": {
"name": "massiR",
"version": "1.46.0",
"sha256": "0dgzld48idxxfxghq4q4c8gpn6szhg7l54cm349jp5wwi7fwk6gq",
"depends": ["Biobase", "cluster", "diptest", "gplots"]
},
"mastR": {
"name": "mastR",
"version": "1.10.0",
"sha256": "1pdy3yzlkvf1j3j1zi8w1jy1rllacrp228i5wi57r8d32cp8y283",
"depends": ["AnnotationDbi", "Biobase", "GSEABase", "Matrix", "SeuratObject", "SingleCellExperiment", "SummarizedExperiment", "dplyr", "edgeR", "ggplot2", "ggpubr", "limma", "msigdb", "org_Hs_eg_db", "patchwork", "tidyr"]
},
"matchBox": {
"name": "matchBox",
"version": "1.52.0",
"sha256": "11gsigii003rjcqpp2ia85pwwpf36j8q6wr1w94ya7874gxcrkgq",
"depends": []
},
"matter": {
"name": "matter",
"version": "2.12.0",
"sha256": "0r8jpxx3zr498fj890l34rwidmq3zgyq289f7dblfkz70ma6j47i",
"depends": ["BH", "BiocGenerics", "BiocParallel", "Matrix", "ProtGenerics", "digest", "irlba"]
},
"mbQTL": {
"name": "mbQTL",
"version": "1.10.0",
"sha256": "0mbi87d12yjfdbrplc4906i6hm7nifsy7ar3wi8fgwjs220r38df",
"depends": ["MatrixEQTL", "broom", "dplyr", "ggplot2", "metagenomeSeq", "pheatmap", "readxl", "stringr", "tidyr"]
},
"mbkmeans": {
"name": "mbkmeans",
"version": "1.26.0",
"sha256": "1sa10gnc962311c7hgmjb3c51hz7s3704yfs2bf7kxzfjyja402s",
"depends": ["BiocParallel", "ClusterR", "DelayedArray", "Matrix", "Rcpp", "RcppArmadillo", "Rhdf5lib", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "beachmat", "benchmarkme"]
},
"mdp": {
"name": "mdp",
"version": "1.30.0",
"sha256": "1r0m5700kqnq9g0lbsgk6iv96vkriwqlk6k2jk5igdlhww75hkwq",
"depends": ["ggplot2", "gridExtra"]
},
"mdqc": {
"name": "mdqc",
"version": "1.72.0",
"sha256": "1cifi9zhy1fv733b39crznkj2kjxxh34aygdvzz1gk7g8b7zcs5j",
"depends": ["MASS", "cluster"]
},
"megadepth": {
"name": "megadepth",
"version": "1.20.0",
"sha256": "115zxqa0dbamc4p6kx9zxc06y0agz7dmi059afw4ci2qyx73smsp",
"depends": ["GenomicRanges", "cmdfun", "dplyr", "fs", "magrittr", "readr", "xfun"]
},
"memes": {
"name": "memes",
"version": "1.18.0",
"sha256": "14gwcrpxwgz0amgm25l00x129kln3fd40if2r1qgvbmlff1cx9sq",
"depends": ["Biostrings", "GenomicRanges", "cmdfun", "dplyr", "ggplot2", "ggseqlogo", "magrittr", "matrixStats", "patchwork", "processx", "purrr", "readr", "rlang", "tibble", "tidyr", "universalmotif", "usethis", "xml2"]
},
"meshes": {
"name": "meshes",
"version": "1.36.0",
"sha256": "01mm15crzsg6z7j5ww93ig557j272vk9bgfihbgvi4da8zmasv8c",
"depends": ["AnnotationDbi", "AnnotationHub", "DOSE", "GOSemSim", "MeSHDbi", "enrichplot", "yulab_utils"]
},
"meshr": {
"name": "meshr",
"version": "2.16.0",
"sha256": "0lqj3yh2kyapjvbgh8w1bwdj96dhzxxs3zyqz2r6his0b28kdjfr",
"depends": ["BiocGenerics", "BiocStyle", "Category", "MeSHDbi", "RSQLite", "S4Vectors", "fdrtool", "knitr", "markdown", "rmarkdown"]
},
"messina": {
"name": "messina",
"version": "1.46.0",
"sha256": "0n1jjiqhpgrnbs7nnp0sf281xlz1i0rxk2957fdlwa8f602akg3y",
"depends": ["Rcpp", "foreach", "ggplot2", "plyr", "survival"]
},
"metaCCA": {
"name": "metaCCA",
"version": "1.38.0",
"sha256": "1jzh9qr66wzrnz5c5xsv9y414nm62ziph2ldcd8fachvqc7wwnls",
"depends": []
},
"metaMS": {
"name": "metaMS",
"version": "1.46.0",
"sha256": "0cymdlv8sjamcs82k3xcjykhfin5fqyyamz8xwrj19pxa2hfr7x9",
"depends": ["BiocGenerics", "CAMERA", "Matrix", "robustbase", "xcms"]
},
"metaSeq": {
"name": "metaSeq",
"version": "1.50.0",
"sha256": "1jz4fyspc7pvrddm40xp79d3bh0agiqx68sp4i2y3cbrzba2y5xq",
"depends": ["NOISeq", "Rcpp", "snow"]
},
"metabCombiner": {
"name": "metabCombiner",
"version": "1.20.0",
"sha256": "1v771vqpjpxx7yng1hnci7nrxqbxzv3ns471r1nl1svjghngklmm",
"depends": ["S4Vectors", "caret", "dplyr", "matrixStats", "mgcv", "rlang", "tidyr"]
},
"metabinR": {
"name": "metabinR",
"version": "1.12.0",
"sha256": "0pda023fw6qbybp68p9mmcxr9slf24fsqf9agsn4b9207pmr20pp",
"depends": ["rJava"]
},
"metabomxtr": {
"name": "metabomxtr",
"version": "1.44.0",
"sha256": "1rmxjnx22kr08ppazpsjb5nmq0ji4wj73kmxn0pd5ixivwkz1bin",
"depends": ["Biobase", "BiocParallel", "Formula", "ggplot2", "multtest", "optimx", "plyr"]
},
"metagene2": {
"name": "metagene2",
"version": "1.26.0",
"sha256": "0a9kmm66qpgf1n8jj7h0c05h2vdkg7kw9lc190dyv9hk6fy542m1",
"depends": ["BiocParallel", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "R6", "Rsamtools", "data_table", "dplyr", "ggplot2", "magrittr", "purrr", "reshape2", "rtracklayer"]
},
"metagenomeSeq": {
"name": "metagenomeSeq",
"version": "1.52.0",
"sha256": "0bkgf6kyh7j767cynxcxqm9xxrqxfq0zzps82hj168n27agx5m30",
"depends": ["Biobase", "Matrix", "RColorBrewer", "Wrench", "foreach", "glmnet", "gplots", "limma", "matrixStats"]
},
"metahdep": {
"name": "metahdep",
"version": "1.68.0",
"sha256": "09rxii0nsrckkr383192sn926s45zc5wpds9rv04fz4f47m1s2qy",
"depends": []
},
"metapod": {
"name": "metapod",
"version": "1.18.0",
"sha256": "1wfy183k5zk41yjr6wlp8jzhjjz2bkqjdifmz1w6fky25ry700gi",
"depends": ["Rcpp"]
},
"metapone": {
"name": "metapone",
"version": "1.16.0",
"sha256": "13bblag8w907qddcvbaqjvlqpbyj23c5jb1cghkajqpf1pn3gmdl",
"depends": ["BiocParallel", "fdrtool", "fgsea", "fields", "ggplot2", "ggrepel", "markdown"]
},
"metaseqR2": {
"name": "metaseqR2",
"version": "1.22.0",
"sha256": "01s9gpndc1skpq69wdsm1kgcz7n4i1zm38g731zphhnw4w3kad54",
"depends": ["ABSSeq", "Biobase", "BiocGenerics", "BiocParallel", "Biostrings", "DESeq2", "DSS", "DT", "EDASeq", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "MASS", "Matrix", "NBPSeq", "RSQLite", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "VennDiagram", "biomaRt", "corrplot", "edgeR", "genefilter", "gplots", "harmonicmeanp", "heatmaply", "htmltools", "httr", "jsonlite", "lattice", "limma", "locfit", "log4r", "magrittr", "pander", "qvalue", "rmarkdown", "rmdformats", "rtracklayer", "stringr", "survcomp", "txdbmaker", "vsn", "yaml", "zoo"]
},
"methInheritSim": {
"name": "methInheritSim",
"version": "1.32.0",
"sha256": "1j53b5d3wfkj0i84sq0aj6nx9adiavjg64bh0xwaq78n7qn6sbm6",
"depends": ["BiocGenerics", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "methylKit", "msm"]
},
"methimpute": {
"name": "methimpute",
"version": "1.32.0",
"sha256": "0zl945lhl291fsbdwgdyqlc3fy8i7z4bn2a21p2j0ald11s63x6d",
"depends": ["Biostrings", "GenomeInfoDb", "GenomicRanges", "IRanges", "Rcpp", "data_table", "ggplot2", "minpack_lm", "reshape2"]
},
"methodical": {
"name": "methodical",
"version": "1.6.0",
"sha256": "14mrc00ya5a372j5q2rrxxp54cbwridaz2b5mm45wqvwgms6bvg5",
"depends": ["AnnotationHub", "BSgenome", "BSgenome_Hsapiens_UCSC_hg19", "BSgenome_Hsapiens_UCSC_hg38", "BiocCheck", "BiocManager", "BiocParallel", "BiocStyle", "Biostrings", "DelayedArray", "ExperimentHub", "GenomeInfoDb", "GenomicRanges", "HDF5Array", "IRanges", "MatrixGenerics", "R_utils", "RcppRoll", "S4Vectors", "SummarizedExperiment", "TumourMethData", "annotatr", "cowplot", "data_table", "devtools", "dplyr", "foreach", "ggplot2", "knitr", "rcmdcheck", "remotes", "rhdf5", "rtracklayer", "scales", "tibble", "tidyr", "usethis"]
},
"methrix": {
"name": "methrix",
"version": "1.24.0",
"sha256": "1jlbk6yb9815xrgar9nc8g8qzl93451gcx6smr7s2agzxnpxi8vz",
"depends": ["BSgenome", "DelayedArray", "DelayedMatrixStats", "GenomicRanges", "HDF5Array", "IRanges", "S4Vectors", "SummarizedExperiment", "data_table", "ggplot2", "matrixStats", "rtracklayer"]
},
"methyLImp2": {
"name": "methyLImp2",
"version": "1.6.0",
"sha256": "1800chr3r65iqpdjxymqd6sjg81ckvv841ycdad1xrpva9g6dv8g",
"depends": ["BiocParallel", "ChAMPdata", "SummarizedExperiment", "corpcor"]
},
"methylCC": {
"name": "methylCC",
"version": "1.24.0",
"sha256": "1m4n82knw39yzlnir7v3ddkfgl66nxgcafsn4sd7a7kldvh9kzwc",
"depends": ["Biobase", "FlowSorted_Blood_450k", "GenomicRanges", "IRanges", "IlluminaHumanMethylation450kanno_ilmn12_hg19", "IlluminaHumanMethylation450kmanifest", "S4Vectors", "bsseq", "bumphunter", "dplyr", "genefilter", "magrittr", "minfi", "plyranges", "quadprog"]
},
"methylGSA": {
"name": "methylGSA",
"version": "1.28.0",
"sha256": "0980n655ahjadi3d052x5mf7w6n9m79ly9188if9d9dqq9ggmncn",
"depends": ["AnnotationDbi", "BiocParallel", "GO_db", "IlluminaHumanMethylation450kanno_ilmn12_hg19", "IlluminaHumanMethylationEPICanno_ilm10b4_hg19", "RobustRankAggreg", "clusterProfiler", "ggplot2", "missMethyl", "org_Hs_eg_db", "reactome_db", "shiny", "stringr"]
},
"methylInheritance": {
"name": "methylInheritance",
"version": "1.34.0",
"sha256": "1b6i1szvzh9bc4hryq8czmz7c5l70aqc8i2lrzhf40sga7iahg6q",
"depends": ["BiocParallel", "GenomicRanges", "IRanges", "S4Vectors", "ggplot2", "gridExtra", "methylKit", "rebus"]
},
"methylKit": {
"name": "methylKit",
"version": "1.36.0",
"sha256": "0ay3x7scmp7j3g3vqlyb3w2cnakaw2bbprj7fsdy6mda7py9p2qi",
"depends": ["GenomicRanges", "IRanges", "KernSmooth", "R_utils", "Rcpp", "Rhtslib", "Rsamtools", "S4Vectors", "Seqinfo", "data_table", "emdbook", "fastseg", "gtools", "limma", "mclust", "mgcv", "qvalue", "rtracklayer"]
},
"methylMnM": {
"name": "methylMnM",
"version": "1.48.0",
"sha256": "0h946n923mqmcbvbs2lrxh9wdnwhxg7nmbhhq0nd1na480bqa6cb",
"depends": ["edgeR", "statmod"]
},
"methylPipe": {
"name": "methylPipe",
"version": "1.44.0",
"sha256": "1lzkpc54j4idw1zcfj7cbjq42in25f4nk8cvkif5w0a6z0h4djjn",
"depends": ["BiocGenerics", "Biostrings", "GenomicAlignments", "GenomicRanges", "Gviz", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "data_table", "gplots", "marray"]
},
"methylSig": {
"name": "methylSig",
"version": "1.22.0",
"sha256": "155dky5z1gdrkns96hr8vvrickidwsjzk5z0c75rkfnqhk8dqjg6",
"depends": ["DSS", "DelayedArray", "DelayedMatrixStats", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "bsseq"]
},
"methylclock": {
"name": "methylclock",
"version": "1.16.0",
"sha256": "0kxdygwna7qxnk6v29aj8b5n43vhag61sjkd761vy76ngxvs202c",
"depends": ["Biobase", "ExperimentHub", "PerformanceAnalytics", "RPMM", "Rcpp", "devtools", "dplyr", "dynamicTreeCut", "ggplot2", "ggpmisc", "ggpubr", "gridExtra", "impute", "methylclockData", "minfi", "planet", "preprocessCore", "quadprog", "tibble", "tidyr", "tidyverse"]
},
"methylscaper": {
"name": "methylscaper",
"version": "1.18.0",
"sha256": "1g2h09ivqrgm52dv5nr2pbrwk94h58s9f7inc0wilj8miv9iby91",
"depends": ["BiocParallel", "Biostrings", "Rfast", "SummarizedExperiment", "data_table", "pwalign", "seqinr", "seriation", "shiny", "shinyFiles", "shinyjs"]
},
"methylumi": {
"name": "methylumi",
"version": "2.56.0",
"sha256": "0wxyy8wiz85x3ls29gm3s64p1vqhfi3av1j6zzm8xwxi8fjlnv1y",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "FDb_InfiniumMethylation_hg19", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment", "annotate", "genefilter", "ggplot2", "illuminaio", "lattice", "matrixStats", "minfi", "reshape2", "scales"]
},
"mgsa": {
"name": "mgsa",
"version": "1.58.0",
"sha256": "0cfhqjf86p9c00c1nn0yy9zqgqxs3v8wikp1k3jidpd1fq6g778n",
"depends": ["gplots"]
},
"miQC": {
"name": "miQC",
"version": "1.18.0",
"sha256": "1iw726i35icmzx7qjlh4gddng96h6yrzg6iy8pqi64ys4i1fvirb",
"depends": ["SingleCellExperiment", "flexmix", "ggplot2"]
},
"miRBaseConverter": {
"name": "miRBaseConverter",
"version": "1.34.0",
"sha256": "09710mz03lnvh45969nbzwdfl699yzmf745kwm8yzkl2djgipb6q",
"depends": []
},
"miRLAB": {
"name": "miRLAB",
"version": "1.40.0",
"sha256": "17sg5y6xk3szvjcn5cd2jq3n5p47df0hckk9pdzsc2ac7z7vvljr",
"depends": ["Category", "GOstats", "Hmisc", "InvariantCausalPrediction", "RCurl", "SummarizedExperiment", "TCGAbiolinks", "ctc", "dplyr", "energy", "entropy", "glmnet", "gplots", "httr", "impute", "limma", "org_Hs_eg_db", "pcalg", "stringr"]
},
"miRNAmeConverter": {
"name": "miRNAmeConverter",
"version": "1.38.0",
"sha256": "025590pfljckxp2bvb83g974sxi8zprbhgixkcglb5szxpvsr1j5",
"depends": ["AnnotationDbi", "DBI", "miRBaseVersions_db", "reshape2"]
},
"miRNApath": {
"name": "miRNApath",
"version": "1.70.0",
"sha256": "09jdm41iqg9ivka8ypyqjfqd7rpm7g5llwk4y9r7jykhjwh2j6d0",
"depends": []
},
"miRNAtap": {
"name": "miRNAtap",
"version": "1.44.0",
"sha256": "13grr33knsgimxb74nmsjahih33zxcq2i2b1ghzxz47c2pc7k721",
"depends": ["AnnotationDbi", "DBI", "RSQLite", "plyr", "sqldf", "stringr"]
},
"miRSM": {
"name": "miRSM",
"version": "2.6.0",
"sha256": "1643mfcfa7a8zmn4pkrgxvr4qhzqwxh91rg8ww17vcqgli3imvf1",
"depends": ["BiBitR", "BicARE", "Biobase", "DOSE", "GFA", "GSEABase", "MCL", "MatrixCorrelation", "NMF", "PMA", "RColorBrewer", "Rcpp", "ReactomePA", "SOMbrero", "SummarizedExperiment", "WGCNA", "biclust", "clusterProfiler", "dbscan", "dynamicTreeCut", "energy", "fabia", "flashClust", "iBBiG", "igraph", "isa2", "mclust", "org_Hs_eg_db", "ppclust", "rJava", "rqubic"]
},
"miRcomp": {
"name": "miRcomp",
"version": "1.40.0",
"sha256": "0g2s82wzvd2zlzlgscwmyi918brklrjhb9b2fljxr8rc25hiy8sm",
"depends": ["Biobase", "KernSmooth", "miRcompData"]
},
"miRspongeR": {
"name": "miRspongeR",
"version": "2.14.0",
"sha256": "0mgfff2kiblr60ymdj31j856lgrai2chlcc54vsmz88pljsb605q",
"depends": ["DOSE", "MCL", "RColorBrewer", "Rcpp", "ReactomePA", "SPONGE", "clusterProfiler", "corpcor", "doParallel", "foreach", "igraph", "org_Hs_eg_db", "survival"]
},
"mia": {
"name": "mia",
"version": "1.18.0",
"sha256": "0rn8y72mlyqk1ss52phg02sj1j6159la8b86hjc83cavrwy9gczn",
"depends": ["BiocGenerics", "BiocParallel", "Biostrings", "DECIPHER", "DelayedArray", "DelayedMatrixStats", "DirichletMultinomial", "IRanges", "MASS", "MatrixGenerics", "MultiAssayExperiment", "Rcpp", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "TreeSummarizedExperiment", "ape", "bluster", "decontam", "dplyr", "rbiom", "rlang", "scater", "scuttle", "stringr", "tibble", "tidyr", "vegan"]
},
"miaDash": {
"name": "miaDash",
"version": "1.2.0",
"sha256": "0xjb277vl403f968f2lxasp6xvid7iai6wgng67q6c0a4y5fhzli",
"depends": ["S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "TreeSummarizedExperiment", "ape", "bluster", "htmltools", "iSEE", "iSEEtree", "mia", "rintrojs", "scater", "scuttle", "shiny", "shinyWidgets", "shinydashboard", "shinyjs", "vegan"]
},
"miaSim": {
"name": "miaSim",
"version": "1.16.0",
"sha256": "0smnz25wq9vjpf7a86awfwp519ivc44d91ifj85g20priv6aj65m",
"depends": ["MatrixGenerics", "S4Vectors", "SummarizedExperiment", "TreeSummarizedExperiment", "deSolve", "poweRlaw"]
},
"miaTime": {
"name": "miaTime",
"version": "1.0.0",
"sha256": "1glkmlf7vcbvvn9zscq79npcysyws2rj6ww70sbgpl98jbfnla4b",
"depends": ["S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "TreeSummarizedExperiment", "dplyr", "mia", "tidyr"]
},
"miaViz": {
"name": "miaViz",
"version": "1.18.0",
"sha256": "1zqicbb6bmx9whw0knmbf2z9ghypyrqf0rcjfvayfjb5gk404aba",
"depends": ["BiocGenerics", "BiocParallel", "DelayedArray", "DirichletMultinomial", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "TreeSummarizedExperiment", "ape", "dplyr", "ggnewscale", "ggplot2", "ggraph", "ggrepel", "ggtree", "mia", "rlang", "scales", "scater", "tibble", "tidygraph", "tidyr", "tidytext", "tidytree", "viridis"]
},
"microRNA": {
"name": "microRNA",
"version": "1.68.0",
"sha256": "0bwgqbxqx4y84vazc9fa5p3jpys8wyq24wcs82rlha72y9527f9i",
"depends": ["Biostrings"]
},
"microbiome": {
"name": "microbiome",
"version": "1.32.0",
"sha256": "155sap719s2p52kqlkgjfgaazk4c376fq2y0055zbjfxn688z9bb",
"depends": ["Biostrings", "Rtsne", "compositions", "dplyr", "ggplot2", "phyloseq", "reshape2", "scales", "tibble", "tidyr", "vegan"]
},
"microbiomeDASim": {
"name": "microbiomeDASim",
"version": "1.24.0",
"sha256": "1gwn93vd73fi8d2kgqkznc2gi52hywja7jdnzw8l16w4m5isjh2n",
"depends": ["Biobase", "MASS", "Matrix", "ggplot2", "metagenomeSeq", "mvtnorm", "pbapply", "phyloseq", "tmvtnorm"]
},
"microbiomeExplorer": {
"name": "microbiomeExplorer",
"version": "1.20.0",
"sha256": "0kjbady0qdavjszs1vcb9gmri885mick26ml8426y513ng15h95c",
"depends": ["Biobase", "DESeq2", "DT", "RColorBrewer", "biomformat", "broom", "car", "dplyr", "forcats", "heatmaply", "knitr", "limma", "lubridate", "magrittr", "matrixStats", "metagenomeSeq", "plotly", "purrr", "readr", "reshape2", "rlang", "rmarkdown", "shiny", "shinyWidgets", "shinycssloaders", "shinydashboard", "shinyjs", "stringr", "tibble", "tidyr", "vegan"]
},
"midasHLA": {
"name": "midasHLA",
"version": "1.18.0",
"sha256": "1naxs3khgnz937n7kjfszpryjfj0ymrrl1nyikz07myrkzn0cxam",
"depends": ["HardyWeinberg", "MultiAssayExperiment", "S4Vectors", "SummarizedExperiment", "assertthat", "broom", "dplyr", "formattable", "kableExtra", "knitr", "magrittr", "qdapTools", "rlang", "stringi", "tibble"]
},
"miloR": {
"name": "miloR",
"version": "2.6.0",
"sha256": "10m82jnhfzv2jkknjy7y4mha5cvr4k2m0rs58yb12505aw9n9lda",
"depends": ["BiocGenerics", "BiocNeighbors", "BiocParallel", "BiocSingular", "Matrix", "MatrixGenerics", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "RcppML", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "cowplot", "dplyr", "edgeR", "ggbeeswarm", "ggplot2", "ggraph", "ggrepel", "gtools", "igraph", "irlba", "limma", "matrixStats", "numDeriv", "patchwork", "pracma", "stringr", "tibble", "tidyr"]
},
"mimager": {
"name": "mimager",
"version": "1.34.0",
"sha256": "081gpygmy0m9pgggznpcq2dw209vx76ip8ayyn9as699fpqiy1ks",
"depends": ["Biobase", "BiocGenerics", "DBI", "S4Vectors", "affy", "affyPLM", "gtable", "oligo", "oligoClasses", "preprocessCore", "scales"]
},
"mina": {
"name": "mina",
"version": "1.18.0",
"sha256": "1pqjir3f8r8rmhg78agccvc0yqwch1nyyanpps6r6d2qlhb5xd16",
"depends": ["Hmisc", "MCL", "RSpectra", "Rcpp", "RcppArmadillo", "RcppParallel", "apcluster", "biganalytics", "bigmemory", "foreach", "ggplot2", "parallelDist", "plyr", "reshape2", "stringr"]
},
"minet": {
"name": "minet",
"version": "3.68.0",
"sha256": "0i1sr5yyn3vwqs5m48z92xcw8ihx21r5r2y0ggqc16a0j5r5rm4g",
"depends": ["infotheo"]
},
"minfi": {
"name": "minfi",
"version": "1.56.0",
"sha256": "1rnaiy8m2nklrn9plf1ca6w0d755iib737s9zmllacrz8lc6b1ik",
"depends": ["Biobase", "BiocGenerics", "BiocParallel", "Biostrings", "DelayedArray", "DelayedMatrixStats", "GEOquery", "GenomicRanges", "HDF5Array", "IRanges", "MASS", "RColorBrewer", "S4Vectors", "Seqinfo", "SummarizedExperiment", "beanplot", "bumphunter", "data_table", "genefilter", "illuminaio", "lattice", "limma", "mclust", "nlme", "nor1mix", "preprocessCore", "quadprog", "reshape", "siggenes"]
},
"mirIntegrator": {
"name": "mirIntegrator",
"version": "1.40.0",
"sha256": "0y8xqjcfmz7f89501vmm4n94p88z61ibdz8jn1gl2csnp2i6p781",
"depends": ["AnnotationDbi", "ROntoTools", "Rgraphviz", "ggplot2", "graph", "org_Hs_eg_db"]
},
"mirTarRnaSeq": {
"name": "mirTarRnaSeq",
"version": "1.18.0",
"sha256": "0569hc22mmpaaiyh799ijfhi7zfq45vif25cy8wgk2zfvd73fhza",
"depends": ["MASS", "R_utils", "assertthat", "caTools", "corrplot", "data_table", "dplyr", "ggplot2", "pheatmap", "pscl", "purrr", "reshape2", "viridis"]
},
"missMethyl": {
"name": "missMethyl",
"version": "1.44.0",
"sha256": "1kdy34wvvdvcjxxp0jkj3c54g14pi5qnq3vzs8ywxinf2a45vyiy",
"depends": ["AnnotationDbi", "BiasedUrn", "Biobase", "BiocGenerics", "GO_db", "GenomeInfoDb", "GenomicRanges", "IRanges", "IlluminaHumanMethylation450kanno_ilmn12_hg19", "IlluminaHumanMethylation450kmanifest", "IlluminaHumanMethylationEPICanno_ilm10b4_hg19", "IlluminaHumanMethylationEPICmanifest", "IlluminaHumanMethylationEPICv2anno_20a1_hg38", "IlluminaHumanMethylationEPICv2manifest", "S4Vectors", "SummarizedExperiment", "limma", "methylumi", "minfi", "org_Hs_eg_db", "ruv", "statmod", "stringr"]
},
"missRows": {
"name": "missRows",
"version": "1.30.0",
"sha256": "1p3hgp6w8rjaa83jk75c7f4qv1cblinc21sn88pp99lva7ml7ppr",
"depends": ["MultiAssayExperiment", "S4Vectors", "ggplot2", "gtools", "plyr"]
},
"mist": {
"name": "mist",
"version": "1.2.0",
"sha256": "0s8k2zcjnmm9l8ndwa8acgjkhgmamglbhxy1mx8qrzhgc3ahfmys",
"depends": ["BiocGenerics", "BiocParallel", "MCMCpack", "Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "car", "mvtnorm", "rlang", "rtracklayer"]
},
"mistyR": {
"name": "mistyR",
"version": "1.18.0",
"sha256": "0hrmw9lnz6pdqhvfmg5gkpx90k05iha5dgzqm30jxpbzq6jwaqcf",
"depends": ["R_utils", "assertthat", "caret", "deldir", "digest", "distances", "dplyr", "filelock", "furrr", "ggplot2", "purrr", "ranger", "readr", "ridge", "rlang", "rlist", "stringr", "tibble", "tidyr", "tidyselect", "withr"]
},
"mitch": {
"name": "mitch",
"version": "1.22.0",
"sha256": "0lixshjjlahm25yn3qn67k12m2wmpd4gmk7vydx9l2shflnsqh41",
"depends": ["GGally", "MASS", "beeswarm", "dplyr", "echarts4r", "ggplot2", "gplots", "gridExtra", "kableExtra", "knitr", "network", "plyr", "reshape2", "rmarkdown"]
},
"mitoClone2": {
"name": "mitoClone2",
"version": "1.16.0",
"sha256": "0rsz3f1gw39hzlf48a2vxsyasipff2dq7nfx4wxi3csr0v2sr7ds",
"depends": ["GenomicRanges", "Matrix", "Rhtslib", "S4Vectors", "deepSNV", "ggplot2", "pheatmap", "reshape2"]
},
"mitology": {
"name": "mitology",
"version": "1.2.0",
"sha256": "0h8smm994dlbszw61858slhy99d3rsbx9fmlmflagvj28yiajz6z",
"depends": ["AnnotationDbi", "ComplexHeatmap", "ReactomePA", "ape", "circlize", "clusterProfiler", "ggplot2", "ggtree", "magrittr", "org_Hs_eg_db", "scales"]
},
"mixOmics": {
"name": "mixOmics",
"version": "6.34.0",
"sha256": "059xfj1air49mfcig226lkicqmq33b4cn7x5m9wpz3qvwa9l3mr7",
"depends": ["BiocParallel", "MASS", "RColorBrewer", "corpcor", "dplyr", "ellipse", "ggplot2", "ggrepel", "gridExtra", "gsignal", "igraph", "lattice", "matrixStats", "rARPACK", "reshape2", "rgl", "tidyr"]
},
"mnem": {
"name": "mnem",
"version": "1.26.0",
"sha256": "0crjbx3kzf2r06601n4f0dd6b46pm3f3azsffblh32rmny28c348",
"depends": ["Linnorm", "Rcpp", "RcppEigen", "Rgraphviz", "cluster", "data_table", "e1071", "flexclust", "ggplot2", "graph", "lattice", "matrixStats", "naturalsort", "snowfall", "tsne", "wesanderson"]
},
"moanin": {
"name": "moanin",
"version": "1.18.0",
"sha256": "1l95lhknp72zzsg28jnfv421pvlqdx4mjarddv3blkc8bm72lp5r",
"depends": ["ClusterR", "MASS", "NMI", "S4Vectors", "SummarizedExperiment", "edgeR", "limma", "matrixStats", "reshape2", "topGO", "viridis", "zoo"]
},
"mobileRNA": {
"name": "mobileRNA",
"version": "1.5.1",
"sha256": "136jliyz1iyf3ncwsval34rnhdgpfgsh2jsxijwnax9vk7q9dixm",
"depends": ["BiocGenerics", "Biostrings", "DESeq2", "GenomicRanges", "IRanges", "RColorBrewer", "S4Vectors", "Seqinfo", "SimDesign", "SummarizedExperiment", "bioseq", "data_table", "dplyr", "edgeR", "ggplot2", "ggrepel", "pheatmap", "progress", "reticulate", "rlang", "rtracklayer", "scales", "tidyr", "tidyselect"]
},
"mogsa": {
"name": "mogsa",
"version": "1.44.0",
"sha256": "05n8q7iw1qp1sxjvrh96wpynqv58jm3wiggwkpw0hygz95a5wkxn",
"depends": ["Biobase", "BiocGenerics", "GSEABase", "cluster", "corpcor", "genefilter", "gplots", "graphite", "svd"]
},
"monaLisa": {
"name": "monaLisa",
"version": "1.16.0",
"sha256": "08sjacip97ng2bna1faz1gx98mjxnrskjb14al7l7f5wkc16mkki",
"depends": ["BSgenome", "BiocGenerics", "BiocParallel", "Biostrings", "ComplexHeatmap", "GenomicRanges", "IRanges", "RSQLite", "S4Vectors", "Seqinfo", "SummarizedExperiment", "TFBSTools", "XVector", "circlize", "cli", "ggplot2", "glmnet", "rlang", "stabs", "tidyr"]
},
"monocle": {
"name": "monocle",
"version": "2.38.0",
"sha256": "1wcxr0c1w8d5fhn2lvd36w2c613c2hyhjbn7j7ai0mp7hbr61g2p",
"depends": ["Biobase", "BiocGenerics", "DDRTree", "HSMMSingleCell", "MASS", "Matrix", "RANN", "Rcpp", "Rtsne", "VGAM", "biocViews", "cluster", "combinat", "dplyr", "fastICA", "ggplot2", "igraph", "irlba", "leidenbase", "limma", "matrixStats", "pheatmap", "plyr", "proxy", "reshape2", "slam", "stringr", "tibble", "viridis"]
},
"mosaics": {
"name": "mosaics",
"version": "2.48.0",
"sha256": "1fw8kkk3qgsffwrmcjrkjrq8l9hxilmjvgwxlspp3rzr0rwwc2v7",
"depends": ["GenomicAlignments", "GenomicRanges", "IRanges", "MASS", "Rcpp", "Rsamtools", "S4Vectors", "Seqinfo", "lattice"]
},
"mosbi": {
"name": "mosbi",
"version": "1.16.0",
"sha256": "1bpiy4kh3md4y8qfk5z9k503mp3jk0gwh1v7i82x890l5s4bxz01",
"depends": ["BH", "QUBIC", "RColorBrewer", "Rcpp", "RcppParallel", "akmbiclust", "biclust", "fabia", "igraph", "isa2", "xml2"]
},
"mosdef": {
"name": "mosdef",
"version": "1.6.0",
"sha256": "0000gasgr2bc486wxygz4xinv2skvcp0p6qv8nlknimv8lz50cl8",
"depends": ["AnnotationDbi", "DESeq2", "DT", "GO_db", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "clusterProfiler", "ggforce", "ggplot2", "ggrepel", "goseq", "htmltools", "rlang", "scales", "topGO"]
},
"motifStack": {
"name": "motifStack",
"version": "1.54.0",
"sha256": "0vx619mlissjm6bb878l2n8jd4cb9x3d96rqjb6kj3gi4b9sys4z",
"depends": ["Biostrings", "TFBSTools", "XML", "ade4", "ggplot2", "htmlwidgets"]
},
"motifTestR": {
"name": "motifTestR",
"version": "1.6.0",
"sha256": "04db9zb2p3nh1md1dz8vl0428vr0m0dfvfdp5zzclww095dx78ff",
"depends": ["Biostrings", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "ggplot2", "harmonicmeanp", "matrixStats", "patchwork", "rlang", "universalmotif"]
},
"motifbreakR": {
"name": "motifbreakR",
"version": "2.24.0",
"sha256": "0ksxil00v1s282zvsj0gjzybq46kcfay849y2syh7la7pgdw3x63",
"depends": ["BSgenome", "BiocFileCache", "BiocGenerics", "BiocParallel", "Biostrings", "DT", "GenomeInfoDb", "GenomicRanges", "Gviz", "IRanges", "MotifDb", "S4Vectors", "SummarizedExperiment", "TFMPvalue", "VariantAnnotation", "biomaRt", "bsicons", "bslib", "matrixStats", "motifStack", "pwalign", "rtracklayer", "shiny", "stringr", "vroom"]
},
"motifcounter": {
"name": "motifcounter",
"version": "1.34.0",
"sha256": "1mbda7hccy43ar1ii5ldn2qvbvzbmdx686kic3y6kxd03frmjb94",
"depends": ["Biostrings"]
},
"motifmatchr": {
"name": "motifmatchr",
"version": "1.32.0",
"sha256": "16crqy7y6iad4b29mgxisf7gp06snf7bxgkm3y06f66y8faajlyk",
"depends": ["BSgenome", "Biostrings", "GenomicRanges", "IRanges", "Matrix", "Rcpp", "RcppArmadillo", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "TFBSTools"]
},
"mpra": {
"name": "mpra",
"version": "1.32.0",
"sha256": "0yqk8h7l7q4q0g4h39q1gbsfb1lqvcxrfbmn2wnl6chzbf71yszd",
"depends": ["BiocGenerics", "S4Vectors", "SummarizedExperiment", "limma", "scales", "statmod"]
},
"msImpute": {
"name": "msImpute",
"version": "1.20.0",
"sha256": "1gjh519b7adrczha2cfh33yqg6rz3fn27m5bydqkf1gw5hilq9wx",
"depends": ["FNN", "data_table", "dplyr", "limma", "matrixStats", "mvtnorm", "pdist", "reticulate", "scran", "softImpute", "tidyr"]
},
"msPurity": {
"name": "msPurity",
"version": "1.36.0",
"sha256": "004wmqqxdpdbhax112v4hidp1bxyq3h8c307cvryyz4gahqfsr0p",
"depends": ["DBI", "RSQLite", "Rcpp", "dbplyr", "doSNOW", "dplyr", "fastcluster", "foreach", "ggplot2", "magrittr", "mzR", "plyr", "reshape2", "stringr"]
},
"msa": {
"name": "msa",
"version": "1.42.0",
"sha256": "0ch5ghyg2wswsywwnrxjcn7dayvm9mxfnww9l38k458r6iw8s7a5",
"depends": ["BiocGenerics", "Biostrings", "IRanges", "Rcpp", "S4Vectors"]
},
"msgbsR": {
"name": "msgbsR",
"version": "1.34.0",
"sha256": "12gbzwvf5rdv8dl29wi8qrrzvl62vncd8q76h3x5bxwbp4dnjzrd",
"depends": ["BSgenome", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "R_utils", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "easyRNASeq", "edgeR", "ggbio", "ggplot2", "plyr"]
},
"mslp": {
"name": "mslp",
"version": "1.12.0",
"sha256": "0pfncr3fdcccd8pi73l5n3qpwg4m2a53grsk8izm5839xc16mwpq",
"depends": ["RankProd", "data_table", "doRNG", "fmsb", "foreach", "magrittr", "org_Hs_eg_db", "pROC", "randomForest"]
},
"msmsEDA": {
"name": "msmsEDA",
"version": "1.48.0",
"sha256": "1pvqw3py9hajk2dx7bwbpw4lqb0m0p9ir6l8wp7hmi0w1gv5grl4",
"depends": ["MASS", "MSnbase", "RColorBrewer", "gplots"]
},
"msmsTests": {
"name": "msmsTests",
"version": "1.48.0",
"sha256": "1g2fbl1x598yc2s81jb95ksw6mfp8yv5vsq8znndazf9zlfnm6r3",
"depends": ["MSnbase", "edgeR", "msmsEDA", "qvalue"]
},
"mspms": {
"name": "mspms",
"version": "1.2.0",
"sha256": "1nipbivljfcr87lfxp2iz6x2zfambk4s7jqyv951vywlq3p8f6pb",
"depends": ["QFeatures", "SummarizedExperiment", "dplyr", "ggplot2", "ggpubr", "ggseqlogo", "heatmaply", "limma", "magrittr", "purrr", "readr", "rlang", "rstatix", "stringr", "tibble", "tidyr"]
},
"msqrob2": {
"name": "msqrob2",
"version": "1.18.0",
"sha256": "0kd452vjwzqizfmqma7770bfcdsn22hk9xfhs37zqj806cadc0sn",
"depends": ["BiocParallel", "MASS", "Matrix", "MultiAssayExperiment", "QFeatures", "SummarizedExperiment", "codetools", "limma", "lme4", "purrr"]
},
"multiClust": {
"name": "multiClust",
"version": "1.40.0",
"sha256": "0xpjx9wv2vkq3r2r1lpjvagac93hrw9q1r3y32zzk05pakrn5fxr",
"depends": ["amap", "cluster", "ctc", "dendextend", "mclust", "survival"]
},
"multiGSEA": {
"name": "multiGSEA",
"version": "1.20.0",
"sha256": "0z2pscdc1il9lywckadyv3ljqkijhi4xfdvaks2z7p3dsrxs14sw",
"depends": ["AnnotationDbi", "dplyr", "fgsea", "graphite", "magrittr", "metaboliteIDmapping", "metap", "rappdirs", "rlang"]
},
"multiHiCcompare": {
"name": "multiHiCcompare",
"version": "1.28.0",
"sha256": "10vqacbx18vwdk23zkib9ccbs47vpvj8x7sbckhnan9y4zvdfd1j",
"depends": ["BiocParallel", "GenomeInfoDb", "GenomeInfoDbData", "GenomicRanges", "HiCcompare", "aggregation", "data_table", "dplyr", "edgeR", "pbapply", "pheatmap", "qqman"]
},
"multiMiR": {
"name": "multiMiR",
"version": "1.32.0",
"sha256": "02dj6aslq2vaafdsd3rfvlbfdg7bahy214w3ld0yi22chypm5m29",
"depends": ["AnnotationDbi", "BiocGenerics", "RCurl", "XML", "dplyr", "purrr", "tibble"]
},
"multiWGCNA": {
"name": "multiWGCNA",
"version": "1.7.0",
"sha256": "06njw4dz3fjh6g703z2k2cphrvmwf4azfg4w86iin6j67f361vz1",
"depends": ["SummarizedExperiment", "WGCNA", "cowplot", "data_table", "dcanr", "dplyr", "flashClust", "ggalluvial", "ggplot2", "ggrepel", "igraph", "patchwork", "readr", "reshape2", "scales", "stringr"]
},
"multicrispr": {
"name": "multicrispr",
"version": "1.20.0",
"sha256": "06ac6r9psmwx65x64clbsmsw6kzbdsbxvw9y1da23pzs37fpd1cc",
"depends": ["BSgenome", "BiocGenerics", "Biostrings", "CRISPRseek", "GenomicFeatures", "GenomicRanges", "Rbowtie", "Seqinfo", "data_table", "ggplot2", "karyoploteR", "magrittr", "plyranges", "reticulate", "rtracklayer", "stringi", "tidyr", "tidyselect"]
},
"multiscan": {
"name": "multiscan",
"version": "1.70.0",
"sha256": "1spl6myhmn8zkhif8bwvdlzhm4jc648qlw928xlc60v2x5y3qb3b",
"depends": ["Biobase"]
},
"multistateQTL": {
"name": "multistateQTL",
"version": "2.2.0",
"sha256": "0jllxhr2pnd4p2yhpplnf784k0gcg3zh5k7593mpxcpjgrhp87b5",
"depends": ["ComplexHeatmap", "QTLExperiment", "S4Vectors", "SummarizedExperiment", "circlize", "collapse", "data_table", "dplyr", "fitdistrplus", "ggplot2", "mashr", "matrixStats", "tidyr", "viridis"]
},
"multtest": {
"name": "multtest",
"version": "2.66.0",
"sha256": "1jc5q1amr2q980xpa7ysp7vg9ihmypv16ph4p8jgpj4jdr1dl71h",
"depends": ["Biobase", "BiocGenerics", "MASS", "survival"]
},
"mumosa": {
"name": "mumosa",
"version": "1.18.0",
"sha256": "16p50lz5qnpdaa56h98a01czsn1pz12mm6z0426qz2yp14wmmi2q",
"depends": ["BiocGenerics", "BiocNeighbors", "BiocParallel", "BiocSingular", "DelayedArray", "DelayedMatrixStats", "IRanges", "Matrix", "S4Vectors", "ScaledMatrix", "SingleCellExperiment", "SummarizedExperiment", "batchelor", "beachmat", "igraph", "metapod", "scran", "scuttle", "uwot"]
},
"muscat": {
"name": "muscat",
"version": "1.24.0",
"sha256": "0nv0qrw3cvzf6j4li2ln4xw2afdlzlpy7fn5b9cpf9g8cyn6qcqj",
"depends": ["BiocParallel", "ComplexHeatmap", "DESeq2", "IHW", "Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "blme", "data_table", "dplyr", "edgeR", "ggplot2", "glmmTMB", "limma", "lme4", "lmerTest", "matrixStats", "progress", "purrr", "rlang", "scales", "scater", "sctransform", "scuttle", "variancePartition"]
},
"muscle": {
"name": "muscle",
"version": "3.52.0",
"sha256": "08ajymh02nlsa3ks5qhnz3d59a1mdsn6vgyslzvib6g0x6ka7z42",
"depends": ["Biostrings"]
},
"musicatk": {
"name": "musicatk",
"version": "2.4.0",
"sha256": "1a3npb4b5a10jp09bx53636hv1xbw2fw60k0iqs7hr7r85rd25m1",
"depends": ["BSgenome", "BSgenome_Hsapiens_UCSC_hg19", "BSgenome_Hsapiens_UCSC_hg38", "BSgenome_Mmusculus_UCSC_mm10", "BSgenome_Mmusculus_UCSC_mm9", "Biostrings", "ComplexHeatmap", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "MASS", "MCMCprecision", "Matrix", "NMF", "S4Vectors", "SummarizedExperiment", "TxDb_Hsapiens_UCSC_hg19_knownGene", "TxDb_Hsapiens_UCSC_hg38_knownGene", "VariantAnnotation", "cluster", "data_table", "decompTumor2Sig", "dplyr", "factoextra", "ggplot2", "ggpubr", "ggrepel", "gridExtra", "gtools", "maftools", "magrittr", "matrixTests", "philentropy", "plotly", "rlang", "scales", "shiny", "stringi", "stringr", "tibble", "tidyr", "tidyverse", "topicmodels", "uwot"]
},
"mutscan": {
"name": "mutscan",
"version": "1.0.0",
"sha256": "1xqfbljy61ir2blglvisqbgyn490mxbn6kfn68l0cjkvpz13wl51",
"depends": ["BiocGenerics", "DT", "DelayedArray", "GGally", "IRanges", "Matrix", "Rcpp", "S4Vectors", "SummarizedExperiment", "csaw", "dplyr", "edgeR", "ggplot2", "ggrepel", "limma", "rlang", "rmarkdown", "tibble", "tidyr", "tidyselect", "xfun"]
},
"mygene": {
"name": "mygene",
"version": "1.46.0",
"sha256": "0a142c95975yphffn8xcg76j0l0ywjw2h0r6jqpm65knhhrn009s",
"depends": ["GenomicFeatures", "Hmisc", "S4Vectors", "httr", "jsonlite", "plyr", "sqldf", "txdbmaker"]
},
"myvariant": {
"name": "myvariant",
"version": "1.40.0",
"sha256": "0lfpkl5y22gg4185ldgkc0y4jxpyvdl83mnzmj9m2qprszbk69r8",
"depends": ["GenomeInfoDb", "Hmisc", "S4Vectors", "Seqinfo", "VariantAnnotation", "httr", "jsonlite", "magrittr", "plyr"]
},
"mzID": {
"name": "mzID",
"version": "1.48.0",
"sha256": "13lav2pfn03r42krxr6mc8rm332plfs081yf18vnw69pxq0vxw43",
"depends": ["ProtGenerics", "XML", "doParallel", "foreach", "iterators", "plyr"]
},
"mzR": {
"name": "mzR",
"version": "2.44.0",
"sha256": "049mvigh03bdiic82ryw7cwqmgzm8ivhdv5pfs6rggaaba3awc42",
"depends": ["Biobase", "BiocGenerics", "ProtGenerics", "Rcpp", "Rhdf5lib", "ncdf4"]
},
"ncGTW": {
"name": "ncGTW",
"version": "1.24.0",
"sha256": "0nipay8lx0dnd2ix8sr84idazhbmc1zryh75hpry9irh80x395nb",
"depends": ["BiocParallel", "Rcpp", "xcms"]
},
"ncRNAtools": {
"name": "ncRNAtools",
"version": "1.20.0",
"sha256": "1zm9qfaj6pcy9y9bb80inhawmdk94a2ps603hwxpgpaa9s701if9",
"depends": ["GenomicRanges", "IRanges", "S4Vectors", "ggplot2", "httr", "xml2"]
},
"ncdfFlow": {
"name": "ncdfFlow",
"version": "2.56.0",
"sha256": "0431c0yxdzaq665rd59ljlsijhqx435l0zpbviy74nkcbmgip1js",
"depends": ["BH", "Biobase", "BiocGenerics", "Rhdf5lib", "cpp11", "flowCore"]
},
"ndexr": {
"name": "ndexr",
"version": "1.32.0",
"sha256": "16a9b4bqx877xsbk8pw9dmg3n5g7m0ych5jd1li1ljczxz4wmkql",
"depends": ["RCX", "httr", "jsonlite", "plyr", "tidyr"]
},
"nearBynding": {
"name": "nearBynding",
"version": "1.20.0",
"sha256": "0cl46qbm8vm6yphjn8xxva3qp7xak780b8r655111dc986xk9d5w",
"depends": ["BiocGenerics", "GenomicRanges", "R_utils", "Rsamtools", "S4Vectors", "Seqinfo", "TxDb_Hsapiens_UCSC_hg19_knownGene", "TxDb_Hsapiens_UCSC_hg38_knownGene", "dplyr", "ggplot2", "gplots", "magrittr", "matrixStats", "plyranges", "rlang", "rtracklayer", "transport"]
},
"nempi": {
"name": "nempi",
"version": "1.18.0",
"sha256": "0naphfkdmvxshz1fh35ki5p00kd030afav67cmnk1j5sv06rysa4",
"depends": ["e1071", "epiNEM", "matrixStats", "mnem", "naturalsort", "nnet", "randomForest"]
},
"netSmooth": {
"name": "netSmooth",
"version": "1.30.0",
"sha256": "0hmji08nyfbb278r76dpix0qlbhn1rr9vyjjc6lx0f8qvsz4cbis",
"depends": ["DelayedArray", "HDF5Array", "Matrix", "SingleCellExperiment", "SummarizedExperiment", "cluster", "clusterExperiment", "data_table", "entropy", "scater"]
},
"netboost": {
"name": "netboost",
"version": "2.18.0",
"sha256": "0kqix8n5gr79hzizfwbg78l61zqkgmpjhgvlyb2h4sl7ka1m0rna",
"depends": ["BiocStyle", "R_utils", "Rcpp", "RcppParallel", "WGCNA", "colorspace", "dynamicTreeCut", "impute"]
},
"nethet": {
"name": "nethet",
"version": "1.42.0",
"sha256": "0l5d5sm5wclhyv5brwzimlzb50dn9y6ls1appm2d0wnl9h806g5z",
"depends": ["CompQuadForm", "GSA", "GeneNet", "ICSNP", "ggm", "ggplot2", "glasso", "glmnet", "huge", "limma", "mclust", "multtest", "mvtnorm", "network"]
},
"netprioR": {
"name": "netprioR",
"version": "1.36.0",
"sha256": "1qi6nxg53pn8fkm9m4rffzrq0v6zh43057n4686c2p1knqfmz8a1",
"depends": ["Matrix", "doParallel", "dplyr", "foreach", "ggplot2", "gridExtra", "pROC", "sparseMVN"]
},
"netresponse": {
"name": "netresponse",
"version": "1.70.0",
"sha256": "0i7wbgx6yfcf1j2b7xwlg6ac59gjfvlxsgiq94v57ikvmplvhzh1",
"depends": ["BiocStyle", "RColorBrewer", "Rgraphviz", "ggplot2", "graph", "igraph", "mclust", "minet", "plyr", "qvalue", "reshape2", "rmarkdown"]
},
"ngsReports": {
"name": "ngsReports",
"version": "2.12.0",
"sha256": "07cmycg3vs4h6r06aq56r3h4ckr3fyaw0mmic29p6a5kz5b19zq3",
"depends": ["BiocGenerics", "Biostrings", "checkmate", "dplyr", "forcats", "ggdendro", "ggplot2", "jsonlite", "lifecycle", "lubridate", "patchwork", "plotly", "rlang", "rmarkdown", "scales", "stringr", "tibble", "tidyr", "tidyselect", "zoo"]
},
"nipalsMCIA": {
"name": "nipalsMCIA",
"version": "1.8.0",
"sha256": "1njd24qvzb3pp94rcadb4dn7h7q79s1ifizrw1b5hxc4lv19fxmr",
"depends": ["ComplexHeatmap", "MultiAssayExperiment", "RSpectra", "SummarizedExperiment", "dplyr", "fgsea", "ggplot2", "pracma", "rlang", "scales"]
},
"nnNorm": {
"name": "nnNorm",
"version": "2.74.0",
"sha256": "13cvpnfj3jglwnrpb301qi2lhkbgim9q0q0nzv02iwydg3034w06",
"depends": ["marray", "nnet"]
},
"nnSVG": {
"name": "nnSVG",
"version": "1.14.0",
"sha256": "1l4vnydyi65z6xac7scpcm7rrhgplcx9jpsjnm7npf1pi4hp6wm2",
"depends": ["BRISC", "BiocParallel", "Matrix", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "matrixStats"]
},
"nondetects": {
"name": "nondetects",
"version": "2.40.0",
"sha256": "0rslx17l1rd1fmb5phwknlwjpp832qg8h3pcap11nw9wzisxa5dk",
"depends": ["Biobase", "HTqPCR", "arm", "limma", "mvtnorm"]
},
"normalize450K": {
"name": "normalize450K",
"version": "1.38.0",
"sha256": "19bw5v7h7m4y2kzqj92rigs048ha7cqgxjnl2bqz5sq2axcqknzh",
"depends": ["Biobase", "illuminaio", "quadprog"]
},
"normr": {
"name": "normr",
"version": "1.36.0",
"sha256": "1knfcwrjwp6nv4pdhvihxad7xpl5pba07x9n1rsmddn6q3nhgq5l",
"depends": ["GenomeInfoDb", "GenomicRanges", "IRanges", "Rcpp", "bamsignals", "qvalue", "rtracklayer"]
},
"notame": {
"name": "notame",
"version": "1.0.0",
"sha256": "0dyqnjci0nc8k56hqhs9wm6xlzn593m8bprhsc4jvylpxlfi64vv",
"depends": ["BiocGenerics", "BiocParallel", "S4Vectors", "SummarizedExperiment", "dplyr", "futile_logger", "ggplot2", "openxlsx", "scales", "stringr", "tidyr"]
},
"notameStats": {
"name": "notameStats",
"version": "1.0.0",
"sha256": "1kw8a12z0qz5hxpwlghl4ynvwv9rpdkm8115fs591a55ppzn1rga",
"depends": ["BiocGenerics", "BiocParallel", "SummarizedExperiment", "broom", "dplyr", "notame", "tibble", "tidyr"]
},
"notameViz": {
"name": "notameViz",
"version": "1.0.0",
"sha256": "0hs3ckg0wff74zvmmcxpbkncxnz8hxm79vrjmzy3gfy0iwww1lhf",
"depends": ["BiocGenerics", "SummarizedExperiment", "cowplot", "devEMF", "dplyr", "ggbeeswarm", "ggdendro", "ggplot2", "ggrepel", "notame", "scales", "stringr", "tibble", "tidyr"]
},
"npGSEA": {
"name": "npGSEA",
"version": "1.46.0",
"sha256": "0p5d8fff2m7sgzkmasf014izjh21cbkzv5gi99ppfid8dv0p7srn",
"depends": ["Biobase", "BiocGenerics", "GSEABase"]
},
"nuCpos": {
"name": "nuCpos",
"version": "1.28.0",
"sha256": "07ndp9xrx9s62cajrd6d5p5y89lkmwcrbwwmbf1pz0q11ylfcd8h",
"depends": []
},
"nucleR": {
"name": "nucleR",
"version": "2.42.0",
"sha256": "04al07jhszkmgszpzyv9vy8dsj333h4awghznqpalifmqady2bn4",
"depends": ["Biobase", "BiocGenerics", "Biostrings", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "ShortRead", "dplyr", "ggplot2", "magrittr"]
},
"nucleoSim": {
"name": "nucleoSim",
"version": "1.38.0",
"sha256": "0f8yzw8w30kfzxanyianffhavricc9l864fda7fg8wl4jsbhpgyv",
"depends": ["IRanges", "S4Vectors"]
},
"nullranges": {
"name": "nullranges",
"version": "1.16.0",
"sha256": "11mdbshvsg5d60gqa9alr43h2kwz0s35pwf5ibs4z5yfry2h3hhs",
"depends": ["GenomicRanges", "IRanges", "InteractionSet", "S4Vectors", "Seqinfo", "data_table", "ggplot2", "ggridges", "plyranges", "progress", "rlang", "scales"]
},
"occugene": {
"name": "occugene",
"version": "1.70.0",
"sha256": "0s4lkpwd34rfp6rhhjsgm8m5gqqcy7cmlq4x1qm3iw6fpkqgvv9i",
"depends": []
},
"octad": {
"name": "octad",
"version": "1.12.0",
"sha256": "0ck5hm6h83cish09ha65m000bvciws5bb3a707wc9kcxcsy08g1k",
"depends": ["AnnotationHub", "Biobase", "DESeq2", "EDASeq", "ExperimentHub", "GSVA", "RUVSeq", "Rfast", "S4Vectors", "data_table", "dplyr", "edgeR", "foreach", "ggplot2", "htmlwidgets", "httr", "limma", "magrittr", "octad_db", "plotly", "qpdf", "reshape2", "rhdf5"]
},
"odseq": {
"name": "odseq",
"version": "1.38.0",
"sha256": "0v7j3fnpphbbmqmm96iqyz7rhv5bkx10qrikkg2zj24k4h7br18p",
"depends": ["kebabs", "mclust", "msa"]
},
"oligo": {
"name": "oligo",
"version": "1.74.0",
"sha256": "07kkssywxinqbkpwgjihk2lia25kgr26vdbb5icwb7xldff9s4x1",
"depends": ["Biobase", "BiocGenerics", "Biostrings", "DBI", "RSQLite", "affxparser", "affyio", "bit", "ff", "oligoClasses", "preprocessCore"]
},
"oligoClasses": {
"name": "oligoClasses",
"version": "1.72.0",
"sha256": "11sy2zpjj8h2wf5qjmfxq07b5bk8y58vbqr06dr9ymk3bgwwp0c8",
"depends": ["Biobase", "BiocGenerics", "BiocManager", "Biostrings", "DBI", "GenomicRanges", "IRanges", "RSQLite", "S4Vectors", "SummarizedExperiment", "affyio", "ff", "foreach"]
},
"omXplore": {
"name": "omXplore",
"version": "1.3.0",
"sha256": "02lrmskpg560yh0aadsx6b822in3s5fvldl52ncly8pckbs7rpc8",
"depends": ["DT", "FactoMineR", "MSnbase", "MultiAssayExperiment", "PSMatch", "RColorBrewer", "SummarizedExperiment", "bs4Dash", "dendextend", "dplyr", "factoextra", "gplots", "highcharter", "htmlwidgets", "nipals", "shiny", "shinyBS", "shinyjqui", "shinyjs", "thematic", "tibble", "tidyr", "vioplot", "visNetwork", "waiter"]
},
"omada": {
"name": "omada",
"version": "1.12.0",
"sha256": "047lmy4c5fawz9pxnjv62jxzrb50p4vajsrnsqrxgsa5ch0rsjhs",
"depends": ["Rcpp", "clValid", "diceR", "dplyr", "fpc", "genieclust", "ggplot2", "glmnet", "kernlab", "pdfCluster", "reshape"]
},
"omicRexposome": {
"name": "omicRexposome",
"version": "1.32.0",
"sha256": "0244dnay1ilgsrpp9ppcr94fw7d2xaiqlcmc6bqlfd739gi8nldx",
"depends": ["Biobase", "MultiDataSet", "PMA", "SmartSVA", "SummarizedExperiment", "ggplot2", "ggrepel", "gridExtra", "isva", "limma", "omicade4", "rexposome", "stringr", "sva"]
},
"omicade4": {
"name": "omicade4",
"version": "1.50.0",
"sha256": "16v3hb9a980yzy05my0l14r76k1lap69zpzjndrdwp114glbhlpl",
"depends": ["Biobase", "ade4", "made4"]
},
"omicplotR": {
"name": "omicplotR",
"version": "1.30.0",
"sha256": "1n8f10z1r4z0q1b8qhklic7ylini5sas35i2c9snd6gllbv2ldl1",
"depends": ["ALDEx2", "DT", "compositions", "jsonlite", "knitr", "matrixStats", "rmarkdown", "shiny", "vegan", "zCompositions"]
},
"omicsGMF": {
"name": "omicsGMF",
"version": "1.0.0",
"sha256": "09bxkgf5qw86avbivqx2nr0apgrgs2f19gy00cwp0mprrvdnc136",
"depends": ["BiocParallel", "BiocSingular", "DelayedArray", "Matrix", "MatrixGenerics", "QFeatures", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "beachmat", "ggplot2", "scater", "scuttle", "sgdGMF"]
},
"omicsPrint": {
"name": "omicsPrint",
"version": "1.30.0",
"sha256": "1714n5ijcryiyamr514rhcxq4wk37d49ad96ginhsxm3x6cals38",
"depends": ["MASS", "MultiAssayExperiment", "RaggedExperiment", "SummarizedExperiment", "matrixStats"]
},
"omicsViewer": {
"name": "omicsViewer",
"version": "1.14.0",
"sha256": "1xnz0325s1cbfda3j77pqw4cnjh22rdb13rw4jdkwnxmr2qmc2ic",
"depends": ["Biobase", "DT", "Matrix", "RColorBrewer", "ROCR", "RSQLite", "S4Vectors", "SummarizedExperiment", "beeswarm", "curl", "drc", "fastmatch", "fgsea", "flatxml", "ggplot2", "ggseqlogo", "htmlwidgets", "httr", "matrixStats", "networkD3", "openxlsx", "plotly", "psych", "reshape2", "shiny", "shinyWidgets", "shinybusy", "shinycssloaders", "shinyjs", "shinythemes", "stringr", "survival", "survminer"]
},
"ompBAM": {
"name": "ompBAM",
"version": "1.14.0",
"sha256": "0qm0v3cqwc88n8l74s6lz7qa5lbfkgppag2l57k9666ry4g5j4av",
"depends": ["Rcpp"]
},
"oncomix": {
"name": "oncomix",
"version": "1.32.0",
"sha256": "0va465rh4405g5vsy1vwhr76gc403smi6d1b3a9gclxpsg1a2ga6",
"depends": ["RColorBrewer", "SummarizedExperiment", "ggplot2", "ggrepel", "mclust"]
},
"oncoscanR": {
"name": "oncoscanR",
"version": "1.12.0",
"sha256": "1nl9r29drgc22vyiqg02a3y7jf6qvkxg5m3lmcvccjb12m5986qm",
"depends": ["GenomicRanges", "IRanges", "S4Vectors", "magrittr", "readr"]
},
"onlineFDR": {
"name": "onlineFDR",
"version": "2.18.0",
"sha256": "0669chhzkqa9giccaxlvv02rfbjfy2b8j6rc131qxic6p8s6ni66",
"depends": ["Rcpp", "RcppProgress", "progress"]
},
"ontoProc": {
"name": "ontoProc",
"version": "2.4.0",
"sha256": "0wyw6gw6vwcya27w7fy11yxy9qf9wcfr5q5hx7sr86czkzrxa6fc",
"depends": ["AnnotationHub", "Biobase", "BiocFileCache", "DT", "RBGL", "R_utils", "Rgraphviz", "S4Vectors", "SummarizedExperiment", "basilisk", "dplyr", "ellmer", "graph", "httr", "igraph", "jsonlite", "magrittr", "ontologyIndex", "ontologyPlot", "reticulate", "shiny"]
},
"openCyto": {
"name": "openCyto",
"version": "2.22.0",
"sha256": "0sd2p8cya949zi9bf7hj2xy7kmkbvpviaxpfm3vb81ffk26z14gk",
"depends": ["BH", "Biobase", "BiocGenerics", "RBGL", "RColorBrewer", "cpp11", "data_table", "flowClust", "flowCore", "flowViz", "flowWorkspace", "graph", "ncdfFlow"]
},
"openPrimeR": {
"name": "openPrimeR",
"version": "1.32.0",
"sha256": "0mv43d41p3isif7mpihp0ayk2izk79b6nws90700dhs5hkh24dq4",
"depends": ["BiocGenerics", "Biostrings", "DECIPHER", "GenomicRanges", "Hmisc", "IRanges", "RColorBrewer", "S4Vectors", "XML", "ape", "digest", "dplyr", "foreach", "ggplot2", "lpSolveAPI", "magrittr", "openxlsx", "plyr", "pwalign", "reshape2", "scales", "seqinr", "stringdist", "stringr", "uniqtag"]
},
"oposSOM": {
"name": "oposSOM",
"version": "2.28.0",
"sha256": "0vwiizxy57xz4ha6nvpkyd5nr63p03mw3n33sq4i3pvyygbm4afj",
"depends": ["Biobase", "RCurl", "Rcpp", "RcppParallel", "XML", "ape", "biomaRt", "fastICA", "fdrtool", "graph", "igraph", "pixmap", "png", "scatterplot3d", "tsne"]
},
"oppar": {
"name": "oppar",
"version": "1.38.0",
"sha256": "1g9ddbw0hzypw4ipyj6llvgq7mlmff27kzqfnd6nzgym8qpjk4d8",
"depends": ["Biobase", "GSEABase", "GSVA"]
},
"optimalFlow": {
"name": "optimalFlow",
"version": "1.22.0",
"sha256": "13nz1583xkr0f6y2l4hmbjb2w9s0ir5bn5r3qcnpxn0yvy5iabgx",
"depends": ["Rfast", "dbscan", "doParallel", "dplyr", "ellipse", "flowMeans", "foreach", "optimalFlowData", "randomForest", "rgl", "rlang", "robustbase", "transport"]
},
"orthogene": {
"name": "orthogene",
"version": "1.16.0",
"sha256": "00ixwgdmjyp7x3p9d4r9da777i7zrys9wilz8lm930cv5bcqsm06",
"depends": ["DelayedArray", "Matrix", "babelgene", "data_table", "dplyr", "ggplot2", "ggpubr", "ggtree", "gprofiler2", "grr", "homologene", "jsonlite", "patchwork", "repmis"]
},
"orthos": {
"name": "orthos",
"version": "1.8.0",
"sha256": "1nyxc7b1gnfb9js4a6v1r3i7cs8wy9qqy5k7zjal27f3s99cdplr",
"depends": ["AnnotationHub", "BiocParallel", "DelayedArray", "ExperimentHub", "HDF5Array", "S4Vectors", "SummarizedExperiment", "basilisk", "colorspace", "cowplot", "dplyr", "ggplot2", "ggpubr", "ggrepel", "ggsci", "keras", "orthosData", "plyr", "reticulate", "rlang", "tensorflow", "tidyr"]
},
"pRoloc": {
"name": "pRoloc",
"version": "1.50.0",
"sha256": "08anricap3nkdfc4k8rkc1gw1qcx990sy1z4lbvf1i1wh98dgzlp",
"depends": ["Biobase", "BiocGenerics", "BiocParallel", "FNN", "LaplacesDemon", "MASS", "MLInterfaces", "MSnbase", "RColorBrewer", "Rcpp", "RcppArmadillo", "biomaRt", "caret", "class", "coda", "colorspace", "dendextend", "e1071", "ggplot2", "gtools", "hexbin", "kernlab", "knitr", "lattice", "mclust", "mixtools", "mvtnorm", "nnet", "plyr", "proxy", "randomForest", "sampling", "scales"]
},
"pRolocGUI": {
"name": "pRolocGUI",
"version": "2.20.0",
"sha256": "05qcpz6y528al8kfxhv330gin970dvs7gbl9bw8l3lnbk1l8vg4a",
"depends": ["Biobase", "BiocGenerics", "DT", "MSnbase", "colorspace", "colourpicker", "dplyr", "ggplot2", "pRoloc", "scales", "shiny", "shinyWidgets", "shinydashboard", "shinydashboardPlus", "shinyhelper", "shinyjs"]
},
"packFinder": {
"name": "packFinder",
"version": "1.22.0",
"sha256": "0hl8s4g0v4l5xy5dngr6zjjwbbbz6wr27qwy1win87khfnxsjilr",
"depends": ["Biostrings", "GenomicRanges", "IRanges", "S4Vectors", "ape", "kmer"]
},
"padma": {
"name": "padma",
"version": "1.20.0",
"sha256": "0mhy9cm7xfl4c6wnvhrmddvn6d4kplpv1fzcwx3ph2ii2ai4w5l5",
"depends": ["FactoMineR", "MultiAssayExperiment", "S4Vectors", "SummarizedExperiment"]
},
"pageRank": {
"name": "pageRank",
"version": "1.20.0",
"sha256": "1rfa57k71xzy7ccbyk77nrsxpvz0xb6mnrnazzrssz7q007i209x",
"depends": ["GenomicRanges", "igraph", "motifmatchr"]
},
"paircompviz": {
"name": "paircompviz",
"version": "1.48.0",
"sha256": "08dw95ny9lxgjz1wk4xsgggkgnvpp1wd4svl43499hnsgc92i60j",
"depends": ["Rgraphviz"]
},
"pairedGSEA": {
"name": "pairedGSEA",
"version": "1.10.0",
"sha256": "1gkgkcajnm2m2277lnkdwyg6107w5d7089ba2gh8dbl5q9krbka2",
"depends": ["BiocParallel", "DESeq2", "DEXSeq", "S4Vectors", "SummarizedExperiment", "aggregation", "fgsea", "ggplot2", "limma", "msigdbr", "showtext", "sva"]
},
"pairkat": {
"name": "pairkat",
"version": "1.16.0",
"sha256": "18h2ykss8x6j7gg0apbirvigh386v4hyli5m2hyfza46ncxllnvw",
"depends": ["CompQuadForm", "KEGGREST", "SummarizedExperiment", "data_table", "igraph", "magrittr", "tibble"]
},
"pandaR": {
"name": "pandaR",
"version": "1.42.0",
"sha256": "031wsqbn8a13cdlfa6139r9s7d8bzvyy7rknaakd5bmrjd6zark5",
"depends": ["Biobase", "BiocGenerics", "RUnit", "ggplot2", "hexbin", "igraph", "matrixStats", "plyr", "reshape"]
},
"panelcn_mops": {
"name": "panelcn.mops",
"version": "1.32.0",
"sha256": "0dp7apinz8921r7zlwxw5axjxr0v53za04jkqywip2q4wc3y30d1",
"depends": ["GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "cn_mops"]
},
"panp": {
"name": "panp",
"version": "1.80.0",
"sha256": "0gsikpbsqww8z7zf69cj0s0q2h80yld9455mi5pqm1a6nmylcvnw",
"depends": ["Biobase", "affy"]
},
"parglms": {
"name": "parglms",
"version": "1.42.0",
"sha256": "0a48b48nw43ydmmfk9rkrmk400gyk6q4rjjnihbbx8gkxzinihld",
"depends": ["BatchJobs", "BiocGenerics", "doParallel", "foreach"]
},
"parody": {
"name": "parody",
"version": "1.68.0",
"sha256": "0542fwhxjkca8lc5yahmz4fxk571q2vllzlv9rixrnn3v32dphgy",
"depends": []
},
"partCNV": {
"name": "partCNV",
"version": "1.8.0",
"sha256": "1z3qzsc5nqp4jnpvhyip7dhknjmlpgalxjaid378j2x62dmg4xcq",
"depends": ["AnnotationHub", "BiocStyle", "GenomicRanges", "Seurat", "SingleCellExperiment", "data_table", "depmixS4", "magrittr"]
},
"pathMED": {
"name": "pathMED",
"version": "1.2.0",
"sha256": "0z4dd84a3jg17pcr9r6zfdmw7371ypqfm7ppxrcl4qry1cgn49n6",
"depends": ["BiocParallel", "FactoMineR", "GSVA", "caret", "caretEnsemble", "decoupleR", "dplyr", "factoextra", "ggplot2", "magrittr", "matrixStats", "metrica", "pbapply", "reshape2", "singscore", "stringi"]
},
"pathRender": {
"name": "pathRender",
"version": "1.78.0",
"sha256": "1c2a7m9b0lbglmmk5g6ci0zvc2gc5zaskiaggzgrwjvg7209zhcw",
"depends": ["AnnotationDbi", "RColorBrewer", "Rgraphviz", "cMAP", "graph"]
},
"pathifier": {
"name": "pathifier",
"version": "1.48.0",
"sha256": "1bkbb7p4dr4ar539h78zxl3l5sz207np48nbjr2vpri7749mi6n7",
"depends": ["R_oo", "princurve"]
},
"pathlinkR": {
"name": "pathlinkR",
"version": "1.6.0",
"sha256": "1qrm1bkxgyngbqi3i8b8jrlbin431ii0x83448gllnj6mi8yc2w7",
"depends": ["ComplexHeatmap", "circlize", "clusterProfiler", "dplyr", "fgsea", "ggforce", "ggplot2", "ggpubr", "ggraph", "ggrepel", "igraph", "purrr", "sigora", "stringr", "tibble", "tidygraph", "tidyr", "vegan", "visNetwork"]
},
"pathview": {
"name": "pathview",
"version": "1.50.0",
"sha256": "1cs3nh196wcfphngyx1h0flv0fhydvjyvk1rpq8jc53mcjsdzh5b",
"depends": ["AnnotationDbi", "KEGGREST", "KEGGgraph", "Rgraphviz", "XML", "graph", "org_Hs_eg_db", "png"]
},
"pathwayPCA": {
"name": "pathwayPCA",
"version": "1.26.0",
"sha256": "0rpak1n9qxwysf5s5hq7b1p41jplljg81k2rzwskfanqyizqib2n",
"depends": ["lars", "survival"]
},
"pcaExplorer": {
"name": "pcaExplorer",
"version": "3.4.0",
"sha256": "0kaih7vach7a93fl4c5r7fnw3xmdvbwkhlpq31rca6wgsx617964",
"depends": ["AnnotationDbi", "DESeq2", "DT", "GO_db", "GOstats", "GenomicRanges", "IRanges", "NMF", "S4Vectors", "SummarizedExperiment", "base64enc", "biomaRt", "genefilter", "ggplot2", "ggrepel", "heatmaply", "knitr", "limma", "mosdef", "pheatmap", "plotly", "plyr", "rmarkdown", "scales", "shiny", "shinyAce", "shinyBS", "shinydashboard", "threejs", "tidyr", "topGO"]
},
"pcaMethods": {
"name": "pcaMethods",
"version": "2.2.0",
"sha256": "1ap5czsqg07vj5vy5gmiivpxgdgh14qb0193nxlil0w303a4q37r",
"depends": ["Biobase", "BiocGenerics", "MASS", "Rcpp"]
},
"pdInfoBuilder": {
"name": "pdInfoBuilder",
"version": "1.74.0",
"sha256": "190cg2c2631v33rckcywryasz7g9kggfba13p9cmi9xbqk3czj3v",
"depends": ["Biobase", "BiocGenerics", "Biostrings", "DBI", "IRanges", "RSQLite", "S4Vectors", "affxparser", "oligo", "oligoClasses"]
},
"peakCombiner": {
"name": "peakCombiner",
"version": "1.0.0",
"sha256": "0pnv5kx3mcdp6xblpgb6vd34pzf7z3x2ikq10l4cais6df5mzhkk",
"depends": ["GenomicRanges", "IRanges", "Seqinfo", "dplyr", "here", "purrr", "readr", "rlang", "stringr", "tibble", "tidyr", "tidyselect"]
},
"peakPantheR": {
"name": "peakPantheR",
"version": "1.24.0",
"sha256": "0hgm0zz5m7nkpv7ypxq90dgk0rwm45ija9m3j6gjb2vibzgfxxws",
"depends": ["DT", "MSnbase", "XML", "bslib", "doParallel", "foreach", "ggplot2", "gridExtra", "lubridate", "minpack_lm", "mzR", "pracma", "scales", "shiny", "shinycssloaders", "stringr", "svglite"]
},
"peco": {
"name": "peco",
"version": "1.22.0",
"sha256": "1jznh029nc8174hrxy3i47q4z4ls16axiif18c0y5hn06yrvcvqa",
"depends": ["SingleCellExperiment", "SummarizedExperiment", "assertthat", "circular", "conicfit", "doParallel", "foreach", "genlasso", "scater"]
},
"pengls": {
"name": "pengls",
"version": "1.16.0",
"sha256": "1fkg112am6rmn340rmcdc4rxmm7f1zkndszlli3s97p8xh5h9s9k",
"depends": ["BiocParallel", "glmnet", "nlme"]
},
"pepStat": {
"name": "pepStat",
"version": "1.44.0",
"sha256": "1dnxrhw94sprqjjhbm48gz9amsyis0vsa4m8zv48jv3h4m4rbmz5",
"depends": ["Biobase", "GenomicRanges", "IRanges", "data_table", "fields", "ggplot2", "limma", "plyr"]
},
"pepXMLTab": {
"name": "pepXMLTab",
"version": "1.44.0",
"sha256": "0vp6ysb86g8760qjnmr7rkf131fga1mm80xkrg6ri3q9r7h85q59",
"depends": ["XML"]
},
"periodicDNA": {
"name": "periodicDNA",
"version": "1.20.0",
"sha256": "1lqj3bixj6b0xmr1qb4h0myqza1zgqs2wp4fy52vxcraqszg859l",
"depends": ["BSgenome", "BiocParallel", "Biostrings", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "cowplot", "ggplot2", "magrittr", "rtracklayer", "zoo"]
},
"pfamAnalyzeR": {
"name": "pfamAnalyzeR",
"version": "1.10.0",
"sha256": "0cyrhn73hnqq29y2p48bfdrx710yc1m1k9pr83d86y29cz2vz86k",
"depends": ["dplyr", "magrittr", "readr", "stringr", "tibble"]
},
"pgca": {
"name": "pgca",
"version": "1.34.0",
"sha256": "1p76g6yj0z20rbwcpdzxaahr88aa89ny92hs2rffprrr6l374yl0",
"depends": []
},
"pgxRpi": {
"name": "pgxRpi",
"version": "1.6.0",
"sha256": "1mzgyvy16ccn8g5h1i4fcimxg21h5p8a16dxrvgihpdhqrvy0zls",
"depends": ["GenomicRanges", "S4Vectors", "SummarizedExperiment", "attempt", "circlize", "dplyr", "future", "future_apply", "ggplot2", "httr", "lubridate", "survival", "survminer", "yaml"]
},
"phantasus": {
"name": "phantasus",
"version": "1.29.0",
"sha256": "1nryfgrxzwj90661sfkllq7qcw5svwbs1fiw3bky7rakw7imi2dp",
"depends": ["AnnotationDbi", "Biobase", "DESeq2", "GEOquery", "Matrix", "Rook", "XML", "apeglm", "assertthat", "ccaPP", "config", "curl", "data_table", "edgeR", "fgsea", "fs", "ggplot2", "gtable", "htmltools", "httpuv", "httr", "jsonlite", "limma", "opencpu", "phantasusLite", "pheatmap", "protolite", "rhdf5", "rhdf5client", "scales", "stringr", "svglite", "tidyr", "yaml"]
},
"phantasusLite": {
"name": "phantasusLite",
"version": "1.8.0",
"sha256": "0fab348czij6snfy99ijjfnk537wpm4p1q0bsrn09hlaazrh3kbi",
"depends": ["Biobase", "data_table", "httr", "rhdf5client", "stringr"]
},
"phenoTest": {
"name": "phenoTest",
"version": "1.58.0",
"sha256": "0n867ahsz1sqfg5wbn1b50lr02h38bxjywx9a1npxxiwjha3n7n5",
"depends": ["AnnotationDbi", "BMA", "Biobase", "Category", "GSEABase", "Heatplus", "Hmisc", "annotate", "biomaRt", "ellipse", "genefilter", "ggplot2", "gplots", "hgu133a_db", "hopach", "limma", "mgcv", "survival", "xtable"]
},
"phenomis": {
"name": "phenomis",
"version": "1.12.0",
"sha256": "1sdscv053v7zy1zjw2h39l1rmx0m7crifzx2b4w1gd351qzh8shc",
"depends": ["Biobase", "MultiAssayExperiment", "MultiDataSet", "PMCMRplus", "RColorBrewer", "SummarizedExperiment", "VennDiagram", "biodb", "biodbChebi", "data_table", "futile_logger", "ggplot2", "ggrepel", "htmlwidgets", "igraph", "limma", "plotly", "ranger", "ropls", "tibble", "tidyr"]
},
"phenopath": {
"name": "phenopath",
"version": "1.34.0",
"sha256": "14n6fm498la467c920qmqxc0scka25zj7939rk91pz1jg9lr93dh",
"depends": ["Rcpp", "SummarizedExperiment", "dplyr", "ggplot2", "tibble", "tidyr"]
},
"philr": {
"name": "philr",
"version": "1.36.0",
"sha256": "1jvhfz81zyvd6ww57p0hjra43jf3hzpjz9fkxrnqy3i6ngx66a47",
"depends": ["ape", "ggplot2", "ggtree", "phangorn", "tidyr"]
},
"phosphonormalizer": {
"name": "phosphonormalizer",
"version": "1.34.0",
"sha256": "16lx57gii5mwny2ql08qhxpd3kpbsbzlv122gff7yv3dsxhbirz9",
"depends": ["matrixStats", "plyr"]
},
"phyloseq": {
"name": "phyloseq",
"version": "1.54.0",
"sha256": "000a4ksians9qxjfcr89qd1h6pr127h2mfjz607sl1h0kml1hiiv",
"depends": ["Biobase", "BiocGenerics", "Biostrings", "ade4", "ape", "biomformat", "cluster", "data_table", "foreach", "ggplot2", "igraph", "multtest", "plyr", "reshape2", "scales", "vegan"]
},
"piano": {
"name": "piano",
"version": "2.26.0",
"sha256": "0z0dikcqcpd9fw5id4yvgx1kcri3n111zwizrgc80zybcr58s0w2",
"depends": ["Biobase", "BiocGenerics", "DT", "fgsea", "gplots", "htmlwidgets", "igraph", "marray", "relations", "scales", "shiny", "shinydashboard", "shinyjs", "visNetwork"]
},
"pickgene": {
"name": "pickgene",
"version": "1.82.0",
"sha256": "0ishdijjpww0vhmyi7r1sdyhsqkyv4csj70wz972kg2gwwdw7df5",
"depends": ["MASS"]
},
"pipeComp": {
"name": "pipeComp",
"version": "1.20.0",
"sha256": "12rzvmikam9rcy30739689xgizhli94mzv596gcbki9xax5s9h7y",
"depends": ["BiocParallel", "ComplexHeatmap", "Matrix", "RColorBrewer", "Rtsne", "S4Vectors", "Seurat", "SingleCellExperiment", "SummarizedExperiment", "aricode", "circlize", "clue", "cluster", "cowplot", "dplyr", "ggplot2", "intrinsicDimension", "knitr", "matrixStats", "randomcoloR", "reshape2", "scales", "scater", "scran", "uwot", "viridisLite"]
},
"pipeFrame": {
"name": "pipeFrame",
"version": "1.26.0",
"sha256": "0rg01a3jprmicj6wqbvysdwgsmjmhnbfbsmhblbr5spzbci17lm1",
"depends": ["BSgenome", "Biostrings", "Seqinfo", "digest", "magrittr", "rmarkdown", "visNetwork"]
},
"planet": {
"name": "planet",
"version": "1.18.0",
"sha256": "0wzmbip9abl6ism4504c01nv57sjm4g7rl25zk8g7vjllvry67lb",
"depends": ["dplyr", "magrittr", "tibble"]
},
"planttfhunter": {
"name": "planttfhunter",
"version": "1.10.0",
"sha256": "0has9lyfn3vxlwhw62c1fwdpqdczvchi2z8qm01v5jvmmk88lgfh",
"depends": ["Biostrings", "SummarizedExperiment"]
},
"plasmut": {
"name": "plasmut",
"version": "1.8.0",
"sha256": "01f7kzid0b8qaw73gcsljlr2mw2gmdvg9pmv6qcyq7vprch2xsf0",
"depends": ["dplyr", "tibble"]
},
"plgem": {
"name": "plgem",
"version": "1.82.0",
"sha256": "00y34si5xcp7va8paxqfg6hbd6f4s8r6myrz0rh2280173nwyfz3",
"depends": ["Biobase", "MASS"]
},
"plier": {
"name": "plier",
"version": "1.80.0",
"sha256": "16b31r42lgna7yk692ann6p16n446qjl5aph83v4cjwgrnqvj42z",
"depends": ["Biobase", "affy"]
},
"plotGrouper": {
"name": "plotGrouper",
"version": "1.28.0",
"sha256": "1s7n1rwl736hx1awjh39dgb4z3rllkbm3xxmrs74v4ibxphlccv0",
"depends": ["Hmisc", "colourpicker", "dplyr", "egg", "ggplot2", "ggpubr", "gridExtra", "gtable", "magrittr", "readr", "readxl", "rlang", "scales", "shiny", "shinythemes", "stringr", "tibble", "tidyr"]
},
"plotgardener": {
"name": "plotgardener",
"version": "1.16.0",
"sha256": "1cbxmk2imna9gw3khzzjzhfa75sanqx7hhw0qzhhh2f0szj8z1s3",
"depends": ["GenomeInfoDb", "GenomicRanges", "IRanges", "RColorBrewer", "Rcpp", "curl", "data_table", "dplyr", "ggplotify", "glue", "plyranges", "purrr", "rhdf5", "rlang", "strawr", "withr"]
},
"plyinteractions": {
"name": "plyinteractions",
"version": "1.8.0",
"sha256": "1k5vvja82dyyfl8fidybxmm81q69y636dfl9pcb7mljp8b97b9k7",
"depends": ["BiocGenerics", "GenomicRanges", "IRanges", "InteractionSet", "S4Vectors", "Seqinfo", "dplyr", "plyranges", "rlang", "tibble", "tidyselect"]
},
"plyranges": {
"name": "plyranges",
"version": "1.30.0",
"sha256": "0ci212srw0pkps3xvnx92qvxnmvf897wvik9x18wkxh07k5b45r8",
"depends": ["BiocGenerics", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "dplyr", "magrittr", "rlang", "rtracklayer", "tidyselect"]
},
"plyxp": {
"name": "plyxp",
"version": "1.4.0",
"sha256": "1gl95ck1hmffbfvhkl0kvhmk3nnvg7qjkn9knxvjwhyl3qbl1iyw",
"depends": ["S4Vectors", "S7", "SummarizedExperiment", "cli", "dplyr", "glue", "pillar", "purrr", "rlang", "tibble", "tidyr", "tidyselect", "vctrs"]
},
"pmm": {
"name": "pmm",
"version": "1.42.0",
"sha256": "0py4aw2p37h3nq87g1fwjx342g89wbv0z8kvxj74ljkyjrdi9cbh",
"depends": ["lme4"]
},
"pmp": {
"name": "pmp",
"version": "1.21.0",
"sha256": "1dprxhggfdxcrj2s3fwhlhi6abppkvi63f2mxgjmfxflj2x9zjjp",
"depends": ["S4Vectors", "SummarizedExperiment", "ggplot2", "impute", "matrixStats", "missForest", "pcaMethods", "reshape2"]
},
"podkat": {
"name": "podkat",
"version": "1.42.0",
"sha256": "04438ik0sivkql3vj9jfjfqrwp3i6a7knp0ciqhrf6ij7da9j57c",
"depends": ["BSgenome", "Biobase", "BiocGenerics", "Biostrings", "GenomicRanges", "IRanges", "Matrix", "Rcpp", "Rhtslib", "Rsamtools", "Seqinfo"]
},
"poem": {
"name": "poem",
"version": "1.2.0",
"sha256": "1i13vcz0y32j8i1ljir5r8py6kz5vmdih8v4ykxmr0mbabh4rc5p",
"depends": ["BiocNeighbors", "BiocParallel", "Matrix", "SpatialExperiment", "SummarizedExperiment", "aricode", "bluster", "clevr", "clue", "cluster", "elsa", "fclust", "igraph", "matrixStats", "mclustcomp", "pdist", "sp", "spdep"]
},
"pogos": {
"name": "pogos",
"version": "1.30.0",
"sha256": "1g7xbq2a195v7r33psshq8080hfh2kn2daa78665mn16k6kmchzb",
"depends": ["S4Vectors", "ggplot2", "httr", "ontoProc", "rjson", "shiny"]
},
"powerTCR": {
"name": "powerTCR",
"version": "1.30.0",
"sha256": "1j7c8cg5zv1d1p1rjw1f1ai75023gd3lz5cyyj5a0r7kgblpdnfd",
"depends": ["VGAM", "cubature", "doParallel", "evmix", "foreach", "magrittr", "purrr", "truncdist", "vegan"]
},
"ppcseq": {
"name": "ppcseq",
"version": "1.18.0",
"sha256": "1j5jp7g9q4l89abivhsdjvi18sy7fx4axqf2rp3mppnhfqjcnkfg",
"depends": ["BH", "Rcpp", "RcppEigen", "RcppParallel", "StanHeaders", "benchmarkme", "dplyr", "edgeR", "foreach", "ggplot2", "lifecycle", "magrittr", "purrr", "rlang", "rstan", "rstantools", "tibble", "tidybayes", "tidyr"]
},
"pqsfinder": {
"name": "pqsfinder",
"version": "2.26.0",
"sha256": "0giy76czahjvafvvylg619dc1wk50svjrhmxa1gmbb8hxa8ajf0z",
"depends": ["BH", "Biostrings", "GenomicRanges", "IRanges", "Rcpp", "S4Vectors"]
},
"pram": {
"name": "pram",
"version": "1.26.0",
"sha256": "0h9335p8b2g4g94yf17jp66swl74l5sf9f82y8jrw0flhw7qwsgw",
"depends": ["BiocGenerics", "BiocParallel", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "data_table", "rtracklayer"]
},
"prebs": {
"name": "prebs",
"version": "1.50.0",
"sha256": "0wi5s05mhs0gw53vrqv1m54d01p1wf7b723zj6all5108482l0fc",
"depends": ["Biobase", "GenomicAlignments", "GenomicRanges", "IRanges", "RPA", "S4Vectors", "Seqinfo", "affy"]
},
"preciseTAD": {
"name": "preciseTAD",
"version": "1.20.0",
"sha256": "0q6a0w6la5799mhr8isdqqsk83bkr7d6yaqnhd8fbk0grwgnrbfs",
"depends": ["GenomicRanges", "IRanges", "ModelMetrics", "PRROC", "S4Vectors", "caret", "cluster", "dbscan", "doSNOW", "e1071", "foreach", "gtools", "pROC", "pbapply", "rCGH", "randomForest"]
},
"preprocessCore": {
"name": "preprocessCore",
"version": "1.72.0",
"sha256": "0kc8af6kcp10iassdfxlx5nj63837dgv2gi23pwznz0lf4ihawj4",
"depends": []
},
"primirTSS": {
"name": "primirTSS",
"version": "1.28.0",
"sha256": "1s3kkx5ykgx8lf075hf581w84g9i0gvp0qhz9l31pvr6h2fgq5cx",
"depends": ["BSgenome_Hsapiens_UCSC_hg38", "BiocGenerics", "Biostrings", "GenomicRanges", "GenomicScores", "Gviz", "IRanges", "JASPAR2018", "R_utils", "S4Vectors", "TFBSTools", "dplyr", "phastCons100way_UCSC_hg38", "purrr", "rtracklayer", "shiny", "stringr", "tibble", "tidyr"]
},
"proActiv": {
"name": "proActiv",
"version": "1.20.0",
"sha256": "1p9wzwv1i4zps487g2vazxbw3p12vsr14ipmjk34ab3wh8bx3iqy",
"depends": ["AnnotationDbi", "BiocParallel", "DESeq2", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment", "data_table", "dplyr", "ggplot2", "gplots", "rlang", "scales", "tibble", "txdbmaker"]
},
"proBAMr": {
"name": "proBAMr",
"version": "1.44.0",
"sha256": "0j9znhzrbv0xi78lpjs9fa98f0g3j8hsy01fx1r0kadbdblnlngy",
"depends": ["AnnotationDbi", "Biostrings", "GenomicFeatures", "GenomicRanges", "IRanges", "rtracklayer", "txdbmaker"]
},
"proDA": {
"name": "proDA",
"version": "1.24.0",
"sha256": "1f67rsnmc71nsza73aw9v6x9lkpbgsz0h8gkyy7ay61dqlfmpd17",
"depends": ["BiocGenerics", "S4Vectors", "SummarizedExperiment", "extraDistr"]
},
"procoil": {
"name": "procoil",
"version": "2.38.0",
"sha256": "08a0r51zwnapdn6l3arlaiq23qhwa93mj5s1jakssfn85if68fxl",
"depends": ["Biostrings", "S4Vectors", "kebabs"]
},
"profileScoreDist": {
"name": "profileScoreDist",
"version": "1.38.0",
"sha256": "1md6hgyc5mlcgjqh51wk1g0n0zrdr1mcqn27y8kagmrvz04js383",
"depends": ["BiocGenerics", "Rcpp"]
},
"progeny": {
"name": "progeny",
"version": "1.32.0",
"sha256": "0hlibwsk7b15n83qpwlk5ahlrqvi8qvwahwv5bs8ydkfkgaywhr4",
"depends": ["Biobase", "decoupleR", "dplyr", "ggplot2", "ggrepel", "gridExtra", "reshape2", "tidyr"]
},
"projectR": {
"name": "projectR",
"version": "1.26.0",
"sha256": "1lh43myc9z3cdg1anm2wdm3h0188kvaf7ihy0h35kd3qj6icr018",
"depends": ["Matrix", "MatrixModels", "NMF", "RColorBrewer", "ROCR", "SingleCellExperiment", "cluster", "cowplot", "dplyr", "fgsea", "ggalluvial", "ggplot2", "ggrepel", "limma", "msigdbr", "reshape2", "scales", "tsne", "umap", "viridis"]
},
"protGear": {
"name": "protGear",
"version": "1.14.0",
"sha256": "086k582c3npqmcj8j2fdyc3x80cdfd9ywl5r9yaig7ss86h9p7fm",
"depends": ["Biobase", "FactoMineR", "GGally", "Kendall", "MASS", "data_table", "dplyr", "factoextra", "flexdashboard", "genefilter", "ggplot2", "ggpubr", "gtools", "htmltools", "knitr", "limma", "magrittr", "pheatmap", "plotly", "plyr", "purrr", "readr", "remotes", "rlang", "rmarkdown", "shiny", "shinydashboard", "styler", "tibble", "tidyr", "vsn"]
},
"proteinProfiles": {
"name": "proteinProfiles",
"version": "1.50.0",
"sha256": "0ddzzap6wglf8fi1d916i2nfqryrifg7gg24xlr8slwj5c99k065",
"depends": []
},
"psichomics": {
"name": "psichomics",
"version": "1.36.0",
"sha256": "1f20ldcjlbj0r07xq4pxny7bnmx74pmc9y72gkp1n639f179n5vw",
"depends": ["AnnotationDbi", "AnnotationHub", "BiocFileCache", "DT", "R_utils", "Rcpp", "Rfast", "SummarizedExperiment", "XML", "cluster", "colourpicker", "data_table", "digest", "dplyr", "edgeR", "fastICA", "fastmatch", "ggplot2", "ggrepel", "highcharter", "htmltools", "httr", "jsonlite", "limma", "pairsD3", "plyr", "purrr", "recount", "reshape2", "shiny", "shinyBS", "shinyjs", "stringr", "survival", "xtable"]
},
"ptairMS": {
"name": "ptairMS",
"version": "1.18.0",
"sha256": "0cxachz3wpnq8g641f24ghgy0byr3dfy1izagg754i4sdlq2097q",
"depends": ["Biobase", "DT", "Hmisc", "MSnbase", "Rcpp", "bit64", "chron", "data_table", "doParallel", "enviPat", "foreach", "ggplot2", "ggpubr", "gridExtra", "minpack_lm", "plotly", "rhdf5", "rlang", "scales", "shiny", "shinyscreenshot", "signal"]
},
"puma": {
"name": "puma",
"version": "3.52.0",
"sha256": "00c2h2bzlpxc7hg04dn1vikydhfdfc86f55qdv73y96cpk6sa0c7",
"depends": ["Biobase", "affy", "affyio", "mclust", "oligo", "oligoClasses"]
},
"pvac": {
"name": "pvac",
"version": "1.58.0",
"sha256": "0x46n6f96k7ifn29sl6k4aassin42897dhjd1nr0gpiwpgvrsygd",
"depends": ["Biobase", "affy"]
},
"pvca": {
"name": "pvca",
"version": "1.50.0",
"sha256": "0bh1snrzx1p73b3xn1ddqpvqr1s3rycb0ffhlwpdxrmf3d7ykcgp",
"depends": ["Biobase", "Matrix", "lme4", "vsn"]
},
"pwalign": {
"name": "pwalign",
"version": "1.6.0",
"sha256": "1f5py5xip1nd2qpa9fhfkxz9sznq8j3pcjpcaq8pydz7psy2jpin",
"depends": ["BiocGenerics", "Biostrings", "IRanges", "S4Vectors", "XVector"]
},
"qPLEXanalyzer": {
"name": "qPLEXanalyzer",
"version": "1.27.0",
"sha256": "0xbb933yhfbmgibjzic342rci3sw9dwxgz5wxgxfmzqwyivjp3px",
"depends": ["Biobase", "BiocGenerics", "Biostrings", "IRanges", "MSnbase", "RColorBrewer", "assertthat", "dplyr", "ggdendro", "ggplot2", "limma", "magrittr", "preprocessCore", "purrr", "readr", "rlang", "scales", "stringr", "tibble", "tidyr", "tidyselect"]
},
"qcmetrics": {
"name": "qcmetrics",
"version": "1.48.0",
"sha256": "1si14qxh8ki0ihjfvyjr4kxi1iqcbb48g0q50i7hnq6aydfc18qw",
"depends": ["Biobase", "S4Vectors", "knitr", "pander", "xtable"]
},
"qmtools": {
"name": "qmtools",
"version": "1.14.0",
"sha256": "06kpza9mrmkhpwsr7d8mwr1pflmq4hirgbgywqqjp0pp7r0ykq2g",
"depends": ["MsCoreUtils", "SummarizedExperiment", "VIM", "ggplot2", "heatmaply", "igraph", "limma", "patchwork", "rlang", "scales"]
},
"qpcrNorm": {
"name": "qpcrNorm",
"version": "1.68.0",
"sha256": "1zs7zfjv8nck70wfb62ypcwpx0m3i7m9gcanswphjf7rhhdnwlr1",
"depends": ["Biobase", "affy", "limma"]
},
"qpgraph": {
"name": "qpgraph",
"version": "2.44.0",
"sha256": "0qb4jczksj174wzfvzdhyj1bv4ijmhi25zdhshf54sp62jg02n10",
"depends": ["AnnotationDbi", "Biobase", "BiocParallel", "GenomicFeatures", "GenomicRanges", "IRanges", "Matrix", "Rgraphviz", "S4Vectors", "Seqinfo", "annotate", "graph", "mvtnorm", "qtl"]
},
"qsea": {
"name": "qsea",
"version": "1.36.0",
"sha256": "1a7454b73idzpz406wqcqkspl8vvs60gz4fq6apvqhb9xmgsyzq4",
"depends": ["BSgenome", "BiocGenerics", "BiocParallel", "Biostrings", "GenomicRanges", "HMMcopy", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "gtools", "limma", "rtracklayer", "zoo"]
},
"qsmooth": {
"name": "qsmooth",
"version": "1.26.0",
"sha256": "0fgb1jj8wha5q9zdwh09q4xlr9m1pga0c38gq8zx4mg38ik6siwv",
"depends": ["Hmisc", "SummarizedExperiment", "sva"]
},
"qsvaR": {
"name": "qsvaR",
"version": "1.14.0",
"sha256": "12mrzjpydy767skp2664z5iw7zyi28rjlwp8d4s5php0fm5aw9gb",
"depends": ["SummarizedExperiment", "dplyr", "ggplot2", "rlang", "sva"]
},
"quantiseqr": {
"name": "quantiseqr",
"version": "1.18.0",
"sha256": "0s6x3pg7mx89y6bnzzak8qw82yxkw74zpj5lgqimkmvh9f0gf35c",
"depends": ["Biobase", "MASS", "SummarizedExperiment", "ggplot2", "limSolve", "preprocessCore", "rlang", "tidyr"]
},
"quantro": {
"name": "quantro",
"version": "1.44.0",
"sha256": "1g2wzbivpj6vqlh1hy2g468y6r9lbkv6007k6fqvvm2gh4b1xac4",
"depends": ["Biobase", "RColorBrewer", "doParallel", "foreach", "ggplot2", "iterators", "minfi"]
},
"quantsmooth": {
"name": "quantsmooth",
"version": "1.76.0",
"sha256": "1cny9al0cb1z2n2zr4lr8yj3ghrkp35x5glkzkl2lkbrn53ij7l5",
"depends": ["quantreg"]
},
"qusage": {
"name": "qusage",
"version": "2.44.0",
"sha256": "17i0fr1y1n1ygml2x1i1rabhzcci741ld91qrdvn2q34z1jvnqb0",
"depends": ["Biobase", "emmeans", "fftw", "limma", "nlme"]
},
"qvalue": {
"name": "qvalue",
"version": "2.42.0",
"sha256": "1wv57xrls786m26316k5i9innk4hgpdfz9hrj8akvavnqrc5myif",
"depends": ["ggplot2", "reshape2"]
},
"r3Cseq": {
"name": "r3Cseq",
"version": "1.56.0",
"sha256": "0h6viyf8g6bgx14y25i8s1xx8jh5dx4lh5ddfq566zp3y93wp78c",
"depends": ["Biostrings", "GenomicRanges", "IRanges", "RColorBrewer", "Rsamtools", "Seqinfo", "VGAM", "data_table", "qvalue", "rtracklayer", "sqldf"]
},
"rBLAST": {
"name": "rBLAST",
"version": "1.6.0",
"sha256": "1kk10kb521rqsb4557h55qj5z6yv2nmkrz160r78lscdgx72z42p",
"depends": ["BiocFileCache", "Biostrings"]
},
"rBiopaxParser": {
"name": "rBiopaxParser",
"version": "2.50.0",
"sha256": "1lc8ib9gyfsbswm8qv719qw7fj7h5pwy1qqg616ykabqfg08iczs",
"depends": ["XML", "data_table"]
},
"rCGH": {
"name": "rCGH",
"version": "1.40.0",
"sha256": "0s4manwnal628ffw3l4mv1qzpsrk31h3k85wx258k656000nm5dv",
"depends": ["AnnotationDbi", "DNAcopy", "GenomicFeatures", "GenomicRanges", "IRanges", "Seqinfo", "TxDb_Hsapiens_UCSC_hg18_knownGene", "TxDb_Hsapiens_UCSC_hg19_knownGene", "TxDb_Hsapiens_UCSC_hg38_knownGene", "aCGH", "affy", "ggplot2", "lattice", "limma", "mclust", "org_Hs_eg_db", "plyr", "shiny"]
},
"rGREAT": {
"name": "rGREAT",
"version": "2.11.0",
"sha256": "1ciz4cn04vm9sniblf4adkgkcldsjnfzssv441madl364da6m9jq",
"depends": ["AnnotationDbi", "DT", "GO_db", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "GetoptLong", "GlobalOptions", "IRanges", "RColorBrewer", "RCurl", "Rcpp", "S4Vectors", "TxDb_Hsapiens_UCSC_hg19_knownGene", "TxDb_Hsapiens_UCSC_hg38_knownGene", "circlize", "digest", "doParallel", "foreach", "org_Hs_eg_db", "progress", "rjson", "shiny"]
},
"rGenomeTracks": {
"name": "rGenomeTracks",
"version": "1.16.0",
"sha256": "11sy8lx3pzp6k2fpidhrwd0q9qqq5ys814rlz4vbdwv0d0ymxfbl",
"depends": ["imager", "rGenomeTracksData", "reticulate"]
},
"rRDP": {
"name": "rRDP",
"version": "1.44.0",
"sha256": "1xsnd1pjijxdiyqh677zsmd2k6ycyfvmxlvbr1sd2sags7dpqlh4",
"depends": ["Biostrings", "rJava"]
},
"rSWeeP": {
"name": "rSWeeP",
"version": "1.22.0",
"sha256": "13vhig0c8h6irczcc7ckv1pxj2pf27a6bcbpgskm25wh1lcmaqii",
"depends": ["Biostrings", "doParallel", "foreach", "stringi"]
},
"rScudo": {
"name": "rScudo",
"version": "1.26.0",
"sha256": "12xx48ng75j1n6qlmfvdy0cv5nrlrlpm0g0ggqw1v51a2ka8jalv",
"depends": ["Biobase", "BiocGenerics", "S4Vectors", "SummarizedExperiment", "igraph", "stringr"]
},
"rTRM": {
"name": "rTRM",
"version": "1.48.0",
"sha256": "1s3ql1byahy4b9wsf3511268v4innk5fj5d6cggbw0880529jkgy",
"depends": ["AnnotationDbi", "DBI", "RSQLite", "igraph"]
},
"rTRMui": {
"name": "rTRMui",
"version": "1.48.0",
"sha256": "0qa7j53xr22jp6s11piny5kscjnd328s4b9irg4ribw1jzpcfacx",
"depends": ["MotifDb", "org_Hs_eg_db", "org_Mm_eg_db", "rTRM", "shiny"]
},
"rWikiPathways": {
"name": "rWikiPathways",
"version": "1.30.0",
"sha256": "06rgqn8a0qww4lcxix0967i2vks6smddgys26ymhrdjqikx53cjf",
"depends": ["RCurl", "XML", "data_table", "dplyr", "httr", "lubridate", "purrr", "readr", "rjson", "stringr", "tidyr"]
},
"raer": {
"name": "raer",
"version": "1.8.0",
"sha256": "0pnpi7m3vrqpgv1d7dpzvvh9a46nlx70qjjnf5yif05lfh44nbkq",
"depends": ["BSgenome", "BiocGenerics", "BiocParallel", "Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Matrix", "Rhtslib", "Rsamtools", "S4Vectors", "Seqinfo", "SingleCellExperiment", "SummarizedExperiment", "cli", "rtracklayer"]
},
"rain": {
"name": "rain",
"version": "1.44.0",
"sha256": "0iksgh33bavhpgzavf9qw9x15yyhphm9hnfyz0lyghcd5mszhw4i",
"depends": ["gmp", "multtest"]
},
"ramr": {
"name": "ramr",
"version": "1.18.0",
"sha256": "00k92aa08gpvgclghx1nsxf6qw4iks3fgpplgg6dpys1q9mg018g",
"depends": ["BiocGenerics", "GenomicRanges", "IRanges", "Rcpp", "S4Vectors", "Seqinfo", "data_table"]
},
"ramwas": {
"name": "ramwas",
"version": "1.34.0",
"sha256": "0m56jj1fn7czvqm8w79m11rs2w7xblpflw5sjnxmn8zxx5nw5m14",
"depends": ["BiocGenerics", "Biostrings", "GenomicAlignments", "KernSmooth", "Rsamtools", "biomaRt", "digest", "filematrix", "glmnet"]
},
"randPack": {
"name": "randPack",
"version": "1.56.0",
"sha256": "1gxmy6mlgbmz290fnw7b6l1fq1qvwim77jmk02wnlg09qafbprmj",
"depends": ["Biobase"]
},
"randRotation": {
"name": "randRotation",
"version": "1.22.0",
"sha256": "06fwdzmpyifv1mdq157h2gh6qdyqx0gxhfra7b52sfz7pj4yh47d",
"depends": ["Rdpack"]
},
"rawDiag": {
"name": "rawDiag",
"version": "1.6.0",
"sha256": "0h73k31j6fffs1nbf2r0190krscm9rxawib9cnbakfagp2qfqywf",
"depends": ["BiocManager", "BiocParallel", "dplyr", "ggplot2", "hexbin", "htmltools", "rawrr", "reshape2", "rlang", "scales", "shiny"]
},
"rawrr": {
"name": "rawrr",
"version": "1.18.0",
"sha256": "1cwf1k837x3j36iqvrvff9wb19y6nyq6015va3rnd7ipfavjjgk1",
"depends": []
},
"rbsurv": {
"name": "rbsurv",
"version": "2.68.0",
"sha256": "0bmb31b7l6x4rnlxzqla8pi2wgp5gn96lls3jr9nrvvv5camiq9p",
"depends": ["Biobase", "survival"]
},
"rcellminer": {
"name": "rcellminer",
"version": "2.32.0",
"sha256": "16ma34rxz5lmk2p42glq53z4vv0c5rk3lq4wl01hg2pc15yx3rbq",
"depends": ["Biobase", "ggplot2", "gplots", "rcellminerData", "shiny", "stringr"]
},
"rebook": {
"name": "rebook",
"version": "1.20.0",
"sha256": "0f5i3s9s0br0zgg8dw8hqzg6ddgwcaflaxc0j8k5krfma3np83c9",
"depends": ["BiocStyle", "CodeDepends", "dir_expiry", "filelock", "knitr", "rmarkdown"]
},
"reconsi": {
"name": "reconsi",
"version": "1.22.0",
"sha256": "164nzs7jcrq149w4gdji4g7d9mvzadbab0qgq62a2ylk275kfa75",
"depends": ["Matrix", "ggplot2", "ks", "matrixStats", "phyloseq", "reshape2"]
},
"recount": {
"name": "recount",
"version": "1.36.0",
"sha256": "16n2wsxl857v25wzzy0v0j1sycm7a1wcg07qdxnfp9nf53fn2v2l",
"depends": ["BiocParallel", "GEOquery", "GenomeInfoDb", "GenomicRanges", "IRanges", "RCurl", "S4Vectors", "SummarizedExperiment", "derfinder", "downloader", "rentrez", "rtracklayer"]
},
"recount3": {
"name": "recount3",
"version": "1.20.0",
"sha256": "1j7dir2bqv813ridsa2ka5dwf2zmd8fxx1s385rlbchw09rgy461",
"depends": ["BiocFileCache", "GenomicRanges", "Matrix", "R_utils", "S4Vectors", "SummarizedExperiment", "data_table", "httr", "rtracklayer", "sessioninfo"]
},
"recountmethylation": {
"name": "recountmethylation",
"version": "1.20.0",
"sha256": "0nlhaxiyfh0mx7ygi99a1gz5mm7qrdx7y0x2gncal19fpbb3rd8v",
"depends": ["BiocFileCache", "DelayedMatrixStats", "HDF5Array", "RCurl", "R_utils", "S4Vectors", "basilisk", "minfi", "reticulate", "rhdf5"]
},
"recoup": {
"name": "recoup",
"version": "1.38.0",
"sha256": "0dl1vagixfqlggdnq8ijj0bi3xrm80rv8d48d317i5l325zqk7c6",
"depends": ["BiocGenerics", "Biostrings", "ComplexHeatmap", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "RSQLite", "Rsamtools", "S4Vectors", "Seqinfo", "biomaRt", "circlize", "ggplot2", "httr", "rtracklayer", "stringr", "txdbmaker"]
},
"regionReport": {
"name": "regionReport",
"version": "1.44.0",
"sha256": "0pa23vwjmn56ln35g38y16ayxmywh2q0jp9pb819favc8plypji8",
"depends": ["BiocStyle", "DEFormats", "DESeq2", "GenomeInfoDb", "GenomicRanges", "RefManageR", "S4Vectors", "Seqinfo", "SummarizedExperiment", "derfinder", "knitr", "knitrBootstrap", "rmarkdown"]
},
"regioneR": {
"name": "regioneR",
"version": "1.42.0",
"sha256": "1s96qn8b4g4bk52d2jpyk1m4nw87ay2zhy6xf4scaqs4gd227196",
"depends": ["BSgenome", "Biostrings", "GenomeInfoDb", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "memoise", "rtracklayer"]
},
"regioneReloaded": {
"name": "regioneReloaded",
"version": "1.12.0",
"sha256": "02ycyzhprcijv891cscgssknaqnrfch3wgdc9v1ypg0lyfsqan8y",
"depends": ["RColorBrewer", "Rtsne", "cluster", "ggplot2", "ggrepel", "regioneR", "reshape2", "scales", "umap"]
},
"regsplice": {
"name": "regsplice",
"version": "1.36.0",
"sha256": "0rghn9as68m6mr2d0ra0dk99y73icjnzx80mmkckw01y9z34dm42",
"depends": ["S4Vectors", "SummarizedExperiment", "edgeR", "glmnet", "limma", "pbapply"]
},
"regutools": {
"name": "regutools",
"version": "1.22.0",
"sha256": "1pf8ljrcjj9d8jnayslbl4br90szc453c4lmnhf56vfg62s2qbjw",
"depends": ["AnnotationDbi", "AnnotationHub", "BiocFileCache", "Biostrings", "DBI", "GenomicRanges", "Gviz", "IRanges", "RCy3", "RSQLite", "S4Vectors"]
},
"retrofit": {
"name": "retrofit",
"version": "1.10.0",
"sha256": "00aax7vq90c9jsisar7siqrj0n498jzrhl2ja4xkx19d4jh3bzcy",
"depends": ["Rcpp"]
},
"rexposome": {
"name": "rexposome",
"version": "1.32.0",
"sha256": "00x020bjh7f4pma304i65c6l9wpbqgqkvsfb9yaanaj9sph33q8l",
"depends": ["Biobase", "FactoMineR", "Hmisc", "S4Vectors", "circlize", "corrplot", "ggplot2", "ggrepel", "ggridges", "glmnet", "gplots", "gridExtra", "gtools", "imputeLCMD", "lme4", "lsr", "mice", "pryr", "reshape2", "scales", "scatterplot3d", "stringr"]
},
"rfPred": {
"name": "rfPred",
"version": "1.48.0",
"sha256": "016gq8lbcixpa0xgq054vg20v1qaklls765aq9nfrcnkgk9ygday",
"depends": ["GenomicRanges", "IRanges", "Rsamtools", "Seqinfo", "data_table"]
},
"rfaRm": {
"name": "rfaRm",
"version": "1.22.0",
"sha256": "1xpjy9zxyk0qd50sk5rq1l7zxabjgvd1vx04qms43q5fqk5bq2qg",
"depends": ["Biostrings", "IRanges", "S4Vectors", "data_table", "httr", "jsonlite", "magick", "rsvg", "rvest", "stringi", "xml2"]
},
"rgoslin": {
"name": "rgoslin",
"version": "1.14.0",
"sha256": "05dazq764zksnlb6ymiiz18dz9m8b30kqigwcs16svg1nfzjyav3",
"depends": ["Rcpp", "dplyr"]
},
"rgsepd": {
"name": "rgsepd",
"version": "1.42.0",
"sha256": "0zswyh9c3ak9zsd0zkzx8ca22a56a6zc2p65zihva3lvhm4wv7z0",
"depends": ["AnnotationDbi", "DESeq2", "GO_db", "SummarizedExperiment", "biomaRt", "goseq", "gplots", "org_Hs_eg_db"]
},
"rhdf5": {
"name": "rhdf5",
"version": "2.54.0",
"sha256": "1psfaqha2sflpp0sm0j3wcxscxb9490pbck69izrsfrrg75jbf7n",
"depends": ["Rhdf5lib", "rhdf5filters"]
},
"rhdf5client": {
"name": "rhdf5client",
"version": "1.32.0",
"sha256": "04h3ff62j8ci0ffrpj4rkhdfdqgi201q5dd9qfbvqvqfk24vs8mw",
"depends": ["DelayedArray", "data_table", "httr", "rjson"]
},
"rhdf5filters": {
"name": "rhdf5filters",
"version": "1.22.0",
"sha256": "0idr4l0byd039hdw74zq3ay9yjy6dd579l68r8bfh1q2884y2zsz",
"depends": ["Rhdf5lib"]
},
"rhinotypeR": {
"name": "rhinotypeR",
"version": "1.4.0",
"sha256": "0sp24s5l95bv7dayx6y5f3b8vinv4l4bzk5a556f3i62l5p49yvn",
"depends": ["Biostrings", "MSA2dist", "msa"]
},
"riboSeqR": {
"name": "riboSeqR",
"version": "1.44.0",
"sha256": "02njg9qxghln611ax5m98hq2xidka6ppy3ywx8171cz7cx1mqymv",
"depends": ["GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "abind", "baySeq", "seqLogo"]
},
"ribor": {
"name": "ribor",
"version": "1.22.0",
"sha256": "04zaghm2b2g9m7wjsirm0dfx75cqgbxg6nrkravq8p8zm11w8070",
"depends": ["S4Vectors", "dplyr", "ggplot2", "hash", "rhdf5", "rlang", "tidyr", "yaml"]
},
"ribosomeProfilingQC": {
"name": "ribosomeProfilingQC",
"version": "1.22.0",
"sha256": "0xrxl0b8lmjhqsdvm1glirj5yvs3ml94cl2zrj36yp7rc1yn2aq1",
"depends": ["AnnotationDbi", "BSgenome", "BiocGenerics", "Biostrings", "EDASeq", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "RUVSeq", "Rsamtools", "Rsubread", "S4Vectors", "Seqinfo", "XVector", "cluster", "ggExtra", "ggfittext", "ggplot2", "ggrepel", "motifStack", "rtracklayer", "scales", "txdbmaker"]
},
"rifi": {
"name": "rifi",
"version": "1.14.0",
"sha256": "1gq05wxw0dd625m5y5y3cwr2gwmm3n3vkl75ghxcsas0yz5vs0s7",
"depends": ["S4Vectors", "SummarizedExperiment", "car", "cowplot", "doMC", "dplyr", "egg", "foreach", "ggplot2", "nls2", "nnet", "reshape2", "rlang", "rtracklayer", "scales", "stringr", "tibble"]
},
"rifiComparative": {
"name": "rifiComparative",
"version": "1.10.0",
"sha256": "0ywwdh8ashi55wgw34qd0ba460pj2wvv8v0i388fk6fpqanzxcm0",
"depends": ["DTA", "LSD", "S4Vectors", "SummarizedExperiment", "cowplot", "devtools", "doMC", "dplyr", "egg", "foreach", "ggplot2", "ggrepel", "nnet", "reshape2", "rlang", "rtracklayer", "scales", "stringr", "tibble", "writexl"]
},
"rigvf": {
"name": "rigvf",
"version": "1.2.0",
"sha256": "1jimnych28qrpwsd82wpx1c24f8acap6b084ph5ccizpgyl3xbzr",
"depends": ["GenomicRanges", "IRanges", "Seqinfo", "cachem", "dplyr", "httr2", "jsonlite", "memoise", "rjsoncons", "rlang", "tidyr", "whisker"]
},
"rmelting": {
"name": "rmelting",
"version": "1.26.0",
"sha256": "0sbhcfrf4r7d6rvdwnzb0kvj10x93c9srzaavc0y2jkgrqcvg1lw",
"depends": ["Rdpack", "rJava"]
},
"rmspc": {
"name": "rmspc",
"version": "1.16.0",
"sha256": "0jsf4s8grc2qx4jqg8kii5jlvni4m1fqgvmaxdvicgpd15wx1qnp",
"depends": ["BiocManager", "GenomicRanges", "processx", "rtracklayer", "stringr"]
},
"rnaEditr": {
"name": "rnaEditr",
"version": "1.20.0",
"sha256": "1f09d09l0flnjx4d54qwilwl861w5wc8p7b1xa8g99gj5qgjc57y",
"depends": ["BiocGenerics", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "bumphunter", "corrplot", "logistf", "plyr", "survival"]
},
"rnaseqcomp": {
"name": "rnaseqcomp",
"version": "1.40.0",
"sha256": "1lq8d4lj11fyfhcikr9xj0c0a7v0bzw2a0x3kn95fxc30qmlrz98",
"depends": ["RColorBrewer"]
},
"roar": {
"name": "roar",
"version": "1.46.0",
"sha256": "1cain3g3q7s25b2pqvwadxw67x4bkdq7czgv7diy2s68xky2zlri",
"depends": ["BiocGenerics", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment", "rtracklayer"]
},
"roastgsa": {
"name": "roastgsa",
"version": "1.8.0",
"sha256": "0c2ydbhvnaczlhh6zk1srfq6pswc67y82v5wcpbqpskxa4q1x0dv",
"depends": ["Biobase", "RColorBrewer", "ggplot2", "gplots", "limma"]
},
"ropls": {
"name": "ropls",
"version": "1.42.0",
"sha256": "0wlldfra8cvagb1125lh3qmrf774d7jf9mfnqnd7mv9s2c6lms0d",
"depends": ["Biobase", "MultiAssayExperiment", "MultiDataSet", "SummarizedExperiment", "ggplot2", "plotly"]
},
"rprimer": {
"name": "rprimer",
"version": "1.14.0",
"sha256": "02hj8qfjbv4p9gw52fyx8klxxg3iwa76agsqj8zzwz9d7pjgqk6b",
"depends": ["Biostrings", "DT", "IRanges", "S4Vectors", "bslib", "ggplot2", "mathjaxr", "patchwork", "reshape2", "shiny", "shinyFeedback", "shinycssloaders"]
},
"rpx": {
"name": "rpx",
"version": "2.18.0",
"sha256": "15f25i5854hmlvw9kvf603pj83di80whlj5c3ij030wdq1g4813b",
"depends": ["BiocFileCache", "RCurl", "curl", "jsonlite", "xml2"]
},
"rqt": {
"name": "rqt",
"version": "1.36.0",
"sha256": "1kwn9x0avaj04hlb3blps4qa94czcv3d9dh57xsklqp1jkcdmcmf",
"depends": ["CompQuadForm", "Matrix", "RUnit", "SummarizedExperiment", "car", "glmnet", "metap", "pls", "ropls"]
},
"rqubic": {
"name": "rqubic",
"version": "1.56.0",
"sha256": "0ffp657yhaj4agd7lgrqcwqqnw6lcybmf1wzahd334vgwi3sz2xp",
"depends": ["Biobase", "BiocGenerics", "biclust"]
},
"rrvgo": {
"name": "rrvgo",
"version": "1.22.0",
"sha256": "0nldapswvf69mdcizynz4cjv2wdf3f24qjl4xsq4cqhzmx5xgjl2",
"depends": ["AnnotationDbi", "GOSemSim", "GO_db", "ggplot2", "ggrepel", "pheatmap", "shiny", "tm", "treemap", "umap", "wordcloud"]
},
"rsbml": {
"name": "rsbml",
"version": "2.68.0",
"sha256": "094h37sdg76365khhablm6wf8mpqbmr151xl83yfv6ld1zilqz9m",
"depends": ["BiocGenerics", "graph"]
},
"rsemmed": {
"name": "rsemmed",
"version": "1.20.0",
"sha256": "1f06l7jlmpcf61dc9szx9h2ajvj6vfh57zkgnpfzl9dx33lyj2yw",
"depends": ["dplyr", "igraph", "magrittr", "stringr"]
},
"rtracklayer": {
"name": "rtracklayer",
"version": "1.70.0",
"sha256": "1i9yx0ngx97lmw7pcdj89da6bb0w6gpc98mrwy9prlmml78d81dn",
"depends": ["BiocGenerics", "BiocIO", "Biostrings", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "XML", "XVector", "curl", "httr", "restfulr"]
},
"runibic": {
"name": "runibic",
"version": "1.32.0",
"sha256": "0zvvkwwkrr7lrcf3rzx98gmb7sz36hn18mkiim0qbk1r576xpgdv",
"depends": ["Rcpp", "SummarizedExperiment", "biclust", "testthat"]
},
"sRACIPE": {
"name": "sRACIPE",
"version": "2.2.0",
"sha256": "1hkb3k4snawgfj68d2cx5320dgl6grdpd5rvxcjf8gaxmyl3vj4k",
"depends": ["BiocGenerics", "MASS", "RColorBrewer", "Rcpp", "S4Vectors", "SummarizedExperiment", "doFuture", "doRNG", "foreach", "future", "ggplot2", "gplots", "gridExtra", "htmlwidgets", "reshape2", "umap", "visNetwork"]
},
"sSNAPPY": {
"name": "sSNAPPY",
"version": "1.14.0",
"sha256": "0jlg8apky668mqgf2xzqxd0555xhfbj8lhdvjp12rc7pfq3ylnks",
"depends": ["SummarizedExperiment", "dplyr", "edgeR", "ggforce", "ggplot2", "ggraph", "graphite", "gtools", "igraph", "magrittr", "org_Hs_eg_db", "pheatmap", "reshape2", "rlang", "stringr", "tibble", "tidyr"]
},
"sSeq": {
"name": "sSeq",
"version": "1.48.0",
"sha256": "1icbgrck6v8mwmmbbrc2qqgk15dmjzbp40nr03jc5v3rlh6m42r1",
"depends": ["RColorBrewer", "caTools"]
},
"safe": {
"name": "safe",
"version": "3.50.0",
"sha256": "1p4lscs7dasag6qfv4s98adgz1sp6q08a3agf8z96qbzg1gvw0c9",
"depends": ["AnnotationDbi", "Biobase", "SparseM"]
},
"sagenhaft": {
"name": "sagenhaft",
"version": "1.80.0",
"sha256": "16m68j9p9ad7x1mwbgpzivhn60y5z4h66kaqpgkzk7wn61lajxh4",
"depends": ["SparseM"]
},
"sangeranalyseR": {
"name": "sangeranalyseR",
"version": "1.19.0",
"sha256": "0hji6y9ya7bg437rcsm2l0dibpzgyrh73kv5h7gdkxwmmx97fbaj",
"depends": ["BiocStyle", "Biostrings", "DECIPHER", "DT", "ape", "data_table", "excelR", "ggdendro", "gridExtra", "knitr", "logger", "openxlsx", "plotly", "pwalign", "reshape2", "rmarkdown", "sangerseqR", "seqinr", "shiny", "shinyWidgets", "shinycssloaders", "shinydashboard", "shinyjs", "stringr", "zeallot"]
},
"sangerseqR": {
"name": "sangerseqR",
"version": "1.46.0",
"sha256": "1hjadhr64qk91byd5cswsjvqggjczjz8cprjiarmf389bfcf0786",
"depends": ["Biostrings", "pwalign", "shiny", "stringr"]
},
"sarks": {
"name": "sarks",
"version": "1.22.0",
"sha256": "0bkkhi5cpbmwc6f1l1vv7mkz4z76mq1sqam3yq3hmjhhxihf8ffx",
"depends": ["Biostrings", "IRanges", "binom", "cluster", "rJava"]
},
"saseR": {
"name": "saseR",
"version": "1.6.0",
"sha256": "0gms4md6qhw2fbbl2sn31fa50abpp19wmm6qh2z048v08zyf3wfb",
"depends": ["ASpli", "BiocGenerics", "BiocParallel", "DESeq2", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "MASS", "MatrixGenerics", "PRROC", "S4Vectors", "SummarizedExperiment", "data_table", "dplyr", "edgeR", "igraph", "limma"]
},
"satuRn": {
"name": "satuRn",
"version": "1.18.0",
"sha256": "0xfylzpbnqjm8d38l7w7cvqlncpca2cj607rg4vfpsslykmqii05",
"depends": ["BiocParallel", "Matrix", "SummarizedExperiment", "boot", "ggplot2", "limma", "locfdr", "pbapply"]
},
"scAnnotatR": {
"name": "scAnnotatR",
"version": "1.16.0",
"sha256": "1r9c033066rdrcnh0d540ln8axsmzpqjb35gxasmrfbd5zgl2m6h",
"depends": ["AnnotationHub", "ROCR", "Seurat", "SingleCellExperiment", "SummarizedExperiment", "ape", "caret", "data_tree", "dplyr", "e1071", "ggplot2", "kernlab", "pROC"]
},
"scBFA": {
"name": "scBFA",
"version": "1.24.0",
"sha256": "0fdnh210afa30z9vjbdz58p47f14n4h6lm6jrvj8hi87wdxjk2lh",
"depends": ["DESeq2", "MASS", "Matrix", "Seurat", "SingleCellExperiment", "SummarizedExperiment", "copula", "ggplot2", "zinbwave"]
},
"scBubbletree": {
"name": "scBubbletree",
"version": "1.12.0",
"sha256": "1pcpja5x0ax1788csykzr08p0h1c1z6vrv4njvy4f2fdj971czwr",
"depends": ["BiocParallel", "Seurat", "ape", "dplyr", "ggplot2", "ggtree", "patchwork", "proxy", "reshape2", "scales"]
},
"scCB2": {
"name": "scCB2",
"version": "1.20.0",
"sha256": "0laxia6dkd00iq0ri10v771y6rspa920q78b2ajxq79j4qadn5l9",
"depends": ["DropletUtils", "Matrix", "Seurat", "SingleCellExperiment", "SummarizedExperiment", "doParallel", "edgeR", "foreach", "iterators", "rhdf5"]
},
"scClassify": {
"name": "scClassify",
"version": "1.22.0",
"sha256": "1napk4jijjqan6x0y0xxf7lkj1d8h7djala7r5npdn5cj7wjykln",
"depends": ["BiocParallel", "Cepo", "Matrix", "S4Vectors", "cluster", "diptest", "ggplot2", "ggraph", "hopach", "igraph", "limma", "mgcv", "minpack_lm", "mixtools", "proxy", "proxyC", "statmod"]
},
"scDD": {
"name": "scDD",
"version": "1.34.0",
"sha256": "03zxkw6jx7gd37vj1li4z54sfw94khv5h962inzx2iazsa774wbh",
"depends": ["BiocParallel", "EBSeq", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "arm", "fields", "ggplot2", "mclust", "outliers", "scran"]
},
"scDDboost": {
"name": "scDDboost",
"version": "1.12.0",
"sha256": "0fzmk0wj7qs7jcdsqd12qmhk9gd23pagimgf1xbn0clasy800zp5",
"depends": ["BH", "BiocParallel", "EBSeq", "Oscope", "Rcpp", "RcppEigen", "SingleCellExperiment", "SummarizedExperiment", "cluster", "ggplot2", "mclust"]
},
"scDataviz": {
"name": "scDataviz",
"version": "1.20.0",
"sha256": "1q7hac56lakzs10dr9kzq2m817m4891acgjccfixgcfsvdc72svl",
"depends": ["MASS", "RColorBrewer", "S4Vectors", "Seurat", "SingleCellExperiment", "corrplot", "flowCore", "ggplot2", "ggrepel", "matrixStats", "reshape2", "scales", "umap"]
},
"scDblFinder": {
"name": "scDblFinder",
"version": "1.24.0",
"sha256": "0l9zhcx4a3wdzldlsg4blq3jh259pwd0h9qbhwwcz94jlp9v9wjq",
"depends": ["BiocGenerics", "BiocNeighbors", "BiocParallel", "BiocSingular", "DelayedArray", "GenomeInfoDb", "GenomicRanges", "IRanges", "MASS", "Matrix", "Rsamtools", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "bluster", "igraph", "rtracklayer", "scater", "scran", "scuttle", "xgboost"]
},
"scDesign3": {
"name": "scDesign3",
"version": "1.8.0",
"sha256": "0pjd68c25badgw9gz44zfcg6w5m9kbvqffjw2ppvi60y7vz0dal9",
"depends": ["BiocParallel", "Matrix", "SingleCellExperiment", "SummarizedExperiment", "coop", "dplyr", "gamlss", "gamlss_dist", "ggplot2", "irlba", "matrixStats", "mclust", "mgcv", "mvtnorm", "pbmcapply", "sparseMVN", "tibble", "umap", "viridis"]
},
"scDiagnostics": {
"name": "scDiagnostics",
"version": "1.4.0",
"sha256": "1fgpp6gkgwr0lkkbi88rhxb1jdzcjx5jz94k4jasnxm62wcb7r50",
"depends": ["FNN", "GGally", "MASS", "Matrix", "SingleCellExperiment", "SummarizedExperiment", "bluster", "cramer", "ggplot2", "ggridges", "igraph", "isotree", "ranger", "rlang", "scales", "stringr", "transport"]
},
"scDotPlot": {
"name": "scDotPlot",
"version": "1.4.0",
"sha256": "07c5sxf9nfk2976zrh1gyz2qhdb6lp65iilyvlw7jzsikyx1hh41",
"depends": ["BiocGenerics", "Seurat", "SingleCellExperiment", "aplot", "cli", "dplyr", "ggplot2", "ggsci", "ggtree", "magrittr", "purrr", "rlang", "scales", "scater", "stringr", "tibble", "tidyr"]
},
"scFeatureFilter": {
"name": "scFeatureFilter",
"version": "1.30.0",
"sha256": "0p3aacnj32nnwn8s7ywngs63gf0cciw517a42b610fzn0nf93b4w",
"depends": ["dplyr", "ggplot2", "magrittr", "rlang", "tibble"]
},
"scGPS": {
"name": "scGPS",
"version": "1.24.0",
"sha256": "0ck8sjxfmb5ls7192yp82bczwwhgf5kqaqivniikhdbb6gy0ilvy",
"depends": ["DESeq2", "Rcpp", "RcppArmadillo", "RcppParallel", "SingleCellExperiment", "SummarizedExperiment", "caret", "dplyr", "dynamicTreeCut", "fastcluster", "ggplot2", "glmnet", "locfit"]
},
"scGraphVerse": {
"name": "scGraphVerse",
"version": "1.0.0",
"sha256": "02nzhprhvvqk903cj7ynskz5dwbjsknd05wn2z8pwnx4na4h33hs",
"depends": ["BiocBaseUtils", "BiocParallel", "GENIE3", "MASS", "Matrix", "MultiAssayExperiment", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "distributions3", "doParallel", "doRNG", "dplyr", "glmnet", "graph", "httr", "igraph", "jsonlite", "mpath", "reticulate", "tidyr"]
},
"scHOT": {
"name": "scHOT",
"version": "1.22.0",
"sha256": "1191rflc7ilcqnmfsgkh532x7mh5hbkg513aiv1zm24gw630jxjb",
"depends": ["BiocParallel", "IRanges", "Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "ggforce", "ggplot2", "igraph", "reshape"]
},
"scHiCcompare": {
"name": "scHiCcompare",
"version": "1.2.0",
"sha256": "17lan37g10hm8r9xn48rw21hyhby42mjfvpj5jj64hh4cjr8n3ky",
"depends": ["BiocParallel", "HiCcompare", "data_table", "dplyr", "ggplot2", "gtools", "lattice", "mclust", "mice", "miceadds", "ranger", "rlang", "rstatix", "tidyr"]
},
"scLANE": {
"name": "scLANE",
"version": "1.0.0",
"sha256": "0g41wzi4jh12l3m85jw3acb92f49gybykjfj7y6s98vpv4ap0vii",
"depends": ["MASS", "Matrix", "Rcpp", "RcppEigen", "bigstatsr", "broom_mixed", "doSNOW", "dplyr", "foreach", "furrr", "future", "gamlss", "geeM", "ggplot2", "glm2", "glmmTMB", "magrittr", "mpath", "purrr", "scales", "tidyr", "tidyselect", "withr"]
},
"scMET": {
"name": "scMET",
"version": "1.12.0",
"sha256": "1r7p3arjqvbxz46hlkh0a5ah3bckg4imxxhqfr8bp8f1i5wv7h6v",
"depends": ["BH", "BiocStyle", "MASS", "Matrix", "Rcpp", "RcppEigen", "RcppParallel", "S4Vectors", "SingleCellExperiment", "StanHeaders", "SummarizedExperiment", "VGAM", "assertthat", "coda", "cowplot", "data_table", "dplyr", "ggplot2", "logitnorm", "matrixStats", "rstan", "rstantools", "viridis"]
},
"scMerge": {
"name": "scMerge",
"version": "1.26.0",
"sha256": "1z9g33sajhbirbafkvzl1cc0cwb6dsy79bmy3dw30z5awyfyjj4m",
"depends": ["BiocNeighbors", "BiocParallel", "BiocSingular", "DelayedArray", "DelayedMatrixStats", "M3Drop", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "batchelor", "cluster", "cvTools", "distr", "igraph", "proxyC", "ruv", "scater", "scran"]
},
"scMitoMut": {
"name": "scMitoMut",
"version": "1.6.0",
"sha256": "02443jab6l3760090x3qvi9zhk2d7nmkv1faibp9fgpdqms01aha",
"depends": ["RColorBrewer", "Rcpp", "RcppArmadillo", "data_table", "ggplot2", "magrittr", "pheatmap", "plyr", "readr", "rhdf5", "stringr"]
},
"scMultiSim": {
"name": "scMultiSim",
"version": "1.6.0",
"sha256": "010gdscjvh49cas4b6n5lnalsasy7864ccvfjvbgm4ywq3y0q5fv",
"depends": ["BiocParallel", "KernelKnn", "MASS", "Rtsne", "SummarizedExperiment", "ape", "assertthat", "crayon", "dplyr", "foreach", "ggplot2", "gplots", "igraph", "markdown", "matrixStats", "phytools", "rlang", "zeallot"]
},
"scPCA": {
"name": "scPCA",
"version": "1.24.0",
"sha256": "0m0qc7i2pqag4r5i9ly35fp7vqnhlfb5jimnk0yfkx5bj0bd9ya8",
"depends": ["BiocParallel", "DelayedArray", "Matrix", "MatrixGenerics", "RSpectra", "Rdpack", "ScaledMatrix", "assertthat", "cluster", "coop", "dplyr", "elasticnet", "kernlab", "matrixStats", "origami", "purrr", "sparsepca", "stringr", "tibble"]
},
"scPipe": {
"name": "scPipe",
"version": "2.10.0",
"sha256": "1y6fmydg0l67v8g830h52pwx9nd2bv5gd15skah1znrjam99vali",
"depends": ["AnnotationDbi", "BiocGenerics", "Biostrings", "DropletUtils", "GGally", "GenomicAlignments", "GenomicRanges", "IRanges", "MASS", "Matrix", "MultiAssayExperiment", "Rcpp", "Rhtslib", "Rsamtools", "Rsubread", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "basilisk", "biomaRt", "data_table", "dplyr", "flexmix", "ggplot2", "glue", "hash", "magrittr", "mclust", "org_Hs_eg_db", "org_Mm_eg_db", "purrr", "reshape", "reticulate", "rlang", "robustbase", "rtracklayer", "scales", "stringr", "testthat", "tibble", "tidyr", "vctrs"]
},
"scRNAseqApp": {
"name": "scRNAseqApp",
"version": "1.10.0",
"sha256": "1z300l667y9pn195rmc92a59v56zxmvjrsxbc073693wbwvwp1yi",
"depends": ["ComplexHeatmap", "DBI", "DT", "GenomeInfoDb", "GenomicRanges", "IRanges", "Matrix", "RColorBrewer", "RSQLite", "RefManageR", "Rsamtools", "S4Vectors", "Seurat", "SeuratObject", "SingleCellExperiment", "bibtex", "bslib", "circlize", "colourpicker", "data_table", "fs", "ggdendro", "ggforce", "ggplot2", "ggrepel", "ggridges", "gridExtra", "htmltools", "jsonlite", "magrittr", "patchwork", "plotly", "reshape2", "rhdf5", "rtracklayer", "scales", "scrypt", "shiny", "shinyhelper", "shinymanager", "slingshot", "sortable", "xfun", "xml2"]
},
"scReClassify": {
"name": "scReClassify",
"version": "1.16.0",
"sha256": "1bwbm2la5wcafisj6xprqg5y4yj0gxxhgmqkz9q6cd8ssfnr0bw6",
"depends": ["SingleCellExperiment", "SummarizedExperiment", "e1071", "randomForest"]
},
"scRecover": {
"name": "scRecover",
"version": "1.26.0",
"sha256": "1nlzrrn4brf2615qj0ynxfpzddx7238nxhbsxp5c333slvncqy8x",
"depends": ["BiocParallel", "MASS", "Matrix", "SAVER", "bbmle", "doParallel", "foreach", "gamlss", "kernlab", "penalized", "preseqR", "pscl", "rsvd"]
},
"scRepertoire": {
"name": "scRepertoire",
"version": "2.5.8",
"sha256": "0ijycpmaivcqqmdc90h5jx8rcwg9112pl2mdpms1hgvww70x3s6w",
"depends": ["Matrix", "Rcpp", "S4Vectors", "SeuratObject", "SingleCellExperiment", "SummarizedExperiment", "dplyr", "evmix", "ggalluvial", "ggdendro", "ggplot2", "ggraph", "iNEXT", "igraph", "immApex", "lifecycle", "purrr", "quantreg", "rjson", "rlang", "tidygraph"]
},
"scShapes": {
"name": "scShapes",
"version": "1.16.0",
"sha256": "1vs0ldcawicby8mbzpxz2szfjljf2pgb6rj231d3bbmn6975822g",
"depends": ["BiocParallel", "MASS", "Matrix", "VGAM", "dgof", "emdbook", "magrittr", "pscl"]
},
"scTGIF": {
"name": "scTGIF",
"version": "1.24.0",
"sha256": "07fmcgvam3swbg254j9hhyj7x9sjvs9b0mrx60hxfd4rg1d0dsgf",
"depends": ["Biobase", "BiocStyle", "GSEABase", "RColorBrewer", "Rcpp", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "ggplot2", "igraph", "knitr", "msigdbr", "nnTensor", "plotly", "rmarkdown", "scales", "schex", "tagcloud", "tibble"]
},
"scTHI": {
"name": "scTHI",
"version": "1.22.0",
"sha256": "0jk38bqr1x17xkpwgxqpsdh9m4vvsccx1a00abqqs07rzfhacfs1",
"depends": ["BiocParallel", "Rtsne"]
},
"scTensor": {
"name": "scTensor",
"version": "2.20.0",
"sha256": "0alipcy6hchw07rwxqib3w6vy5lycfxqrsbsazqmli1n2qblkjj3",
"depends": ["AnnotationDbi", "AnnotationHub", "BiocManager", "BiocStyle", "Category", "DOSE", "GOstats", "MeSHDbi", "RSQLite", "ReactomePA", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "abind", "ccTensor", "checkmate", "crayon", "ggplot2", "heatmaply", "igraph", "knitr", "meshr", "nnTensor", "outliers", "plotly", "plotrix", "rTensor", "reactome_db", "rmarkdown", "schex", "tagcloud", "visNetwork"]
},
"scTreeViz": {
"name": "scTreeViz",
"version": "1.16.0",
"sha256": "0jm9ymw3vinzrsgn762yzrrvxxvbk4bgswa4hqfs6cacdhnsah0x",
"depends": ["Matrix", "Rtsne", "S4Vectors", "Seurat", "SingleCellExperiment", "SummarizedExperiment", "clustree", "data_table", "digest", "epivizr", "epivizrData", "epivizrServer", "ggplot2", "ggraph", "httr", "igraph", "scater", "scran", "sys"]
},
"scafari": {
"name": "scafari",
"version": "1.0.0",
"sha256": "0pwda9szl9ga8ic17wnfkadgisyzjy6gihvsrcn1ap6vdjzgs745",
"depends": ["ComplexHeatmap", "DT", "GenomicRanges", "RANN", "R_utils", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "biomaRt", "circlize", "dbscan", "dplyr", "factoextra", "ggbio", "ggplot2", "httr", "igraph", "jsonlite", "magrittr", "markdown", "org_Hs_eg_db", "plotly", "reshape2", "rhdf5", "scales", "shiny", "shinyBS", "shinycssloaders", "shinycustomloader", "shinyjs", "stringr", "tibble", "tidyr", "txdbmaker", "waiter"]
},
"scanMiR": {
"name": "scanMiR",
"version": "1.16.0",
"sha256": "0yfzfsilqfm3waj4hjx455k7icln526jgmhp5byyq75zn3a8mgr8",
"depends": ["BiocParallel", "Biostrings", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "cowplot", "data_table", "ggplot2", "pwalign", "seqLogo", "stringi"]
},
"scanMiRApp": {
"name": "scanMiRApp",
"version": "1.16.0",
"sha256": "0mfmlvdlzn9ldxhfrx1szhkssqqwqzy7l943j2y2rfsavg3w14lj",
"depends": ["AnnotationDbi", "AnnotationFilter", "AnnotationHub", "BiocParallel", "Biostrings", "DT", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "Matrix", "S4Vectors", "data_table", "digest", "ensembldb", "fst", "ggplot2", "htmlwidgets", "plotly", "rintrojs", "rtracklayer", "scanMiR", "scanMiRData", "shiny", "shinycssloaders", "shinydashboard", "shinyjqui", "txdbmaker", "waiter"]
},
"scater": {
"name": "scater",
"version": "1.38.0",
"sha256": "1qwygk8fg8nharrkmjs65fcl3lsdi232f2383s5j8vm1qil5gghd",
"depends": ["BiocGenerics", "BiocNeighbors", "BiocParallel", "BiocSingular", "DelayedArray", "Matrix", "MatrixGenerics", "RColorBrewer", "RcppML", "Rtsne", "S4Vectors", "SingleCellExperiment", "SparseArray", "SummarizedExperiment", "beachmat", "ggbeeswarm", "ggplot2", "ggrastr", "ggrepel", "pheatmap", "rlang", "scuttle", "uwot", "viridis"]
},
"scatterHatch": {
"name": "scatterHatch",
"version": "1.16.0",
"sha256": "027gmj3ymx9f15rcymj30xggmf0rggs2jygw39mxf7iqak9r97kc",
"depends": ["ggplot2", "plyr", "spatstat_geom"]
},
"sccomp": {
"name": "sccomp",
"version": "2.2.0",
"sha256": "06xnp6f962q6qc4078dcaqsh9cdvxgwlis4sinh90y96fmsph6qi",
"depends": ["SingleCellExperiment", "boot", "cli", "crayon", "dplyr", "fansi", "forcats", "ggplot2", "ggrepel", "glue", "instantiate", "lifecycle", "magrittr", "patchwork", "purrr", "readr", "rlang", "scales", "stringr", "tibble", "tidyr", "tidyselect"]
},
"scde": {
"name": "scde",
"version": "2.38.0",
"sha256": "1cmqzlqdb561jyd7yvga55wpx78bx8wlv3ilq5kwmawjd8x4yrf6",
"depends": ["BiocParallel", "Cairo", "MASS", "RColorBrewer", "RMTstat", "Rcpp", "RcppArmadillo", "Rook", "edgeR", "extRemes", "flexmix", "mgcv", "nnet", "pcaMethods", "quantreg", "rjson"]
},
"scds": {
"name": "scds",
"version": "1.26.0",
"sha256": "1j0z0w8cw80mr9nll9lj6x8573cyi1hk0wlz5f1bm66c2pf4q547",
"depends": ["Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "dplyr", "pROC", "xgboost"]
},
"schex": {
"name": "schex",
"version": "1.24.0",
"sha256": "0h3dh3vcdfvyx9rryjzagmgfxqspfz6khjwwficvc80izkbm5kj0",
"depends": ["SingleCellExperiment", "cluster", "concaveman", "dplyr", "entropy", "ggforce", "ggplot2", "hexbin", "rlang"]
},
"scider": {
"name": "scider",
"version": "1.8.0",
"sha256": "1007qg5rm11mm6ljwn5jyfgiil1byfr69xy5hvvl10wfrvydryjy",
"depends": ["BiocNeighbors", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SpatialPack", "SummarizedExperiment", "dbscan", "ggplot2", "hexDensity", "hexbin", "igraph", "irlba", "isoband", "janitor", "knitr", "lwgeom", "pheatmap", "plotly", "sf", "shiny", "spatstat_explore", "spatstat_geom", "uwot"]
},
"scifer": {
"name": "scifer",
"version": "1.12.0",
"sha256": "04sglgwsxnw8h4v03hv9vh7hrr97f83pmvyqy1axz5g37lhgrf49",
"depends": ["Biostrings", "DECIPHER", "basilisk", "basilisk_utils", "data_table", "dplyr", "flowCore", "ggplot2", "gridExtra", "here", "kableExtra", "knitr", "plyr", "pwalign", "reticulate", "rlang", "rmarkdown", "sangerseqR", "scales", "stringr", "tibble"]
},
"scmap": {
"name": "scmap",
"version": "1.32.0",
"sha256": "1hjpf2ihjd48q0p1alrnmxkimxpd8l2k0ax2493141gcz39snv58",
"depends": ["Biobase", "BiocGenerics", "Rcpp", "RcppArmadillo", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "dplyr", "e1071", "ggplot2", "googleVis", "matrixStats", "proxy", "randomForest", "reshape2"]
},
"scmeth": {
"name": "scmeth",
"version": "1.30.0",
"sha256": "0j977hw1rfm483rk793ihjw7ijxxvninx2h2i6g9im7v0n499f68",
"depends": ["AnnotationHub", "BSgenome", "BiocGenerics", "Biostrings", "DT", "DelayedArray", "GenomeInfoDb", "GenomicRanges", "HDF5Array", "Seqinfo", "SummarizedExperiment", "annotatr", "bsseq", "reshape2"]
},
"scone": {
"name": "scone",
"version": "1.34.0",
"sha256": "1mna7qf6mhjqq50gpr47kz3936qj3z7hv6jh3sx2yn6dsmi12agv",
"depends": ["BiocParallel", "DelayedMatrixStats", "MatrixGenerics", "RColorBrewer", "RUVSeq", "SingleCellExperiment", "SparseArray", "SummarizedExperiment", "aroma_light", "boot", "class", "cluster", "compositions", "diptest", "edgeR", "fpc", "gplots", "hexbin", "limma", "matrixStats", "mixtools", "rARPACK", "rhdf5", "sparseMatrixStats"]
},
"scoreInvHap": {
"name": "scoreInvHap",
"version": "1.32.0",
"sha256": "0md5crlf4b62nmphxipai7jnpaz7mn2b8r08xjk31zx7skba266j",
"depends": ["BiocParallel", "Biostrings", "GenomicRanges", "SummarizedExperiment", "VariantAnnotation", "snpStats"]
},
"scoup": {
"name": "scoup",
"version": "1.4.0",
"sha256": "03gaggdqxkxxx11lfrv21ransdlkmhwzbrn900sjqwn551maacj5",
"depends": ["Biostrings", "Matrix"]
},
"scp": {
"name": "scp",
"version": "1.20.0",
"sha256": "0ah2zy4mi5h1ihrv02s6z5q814rbyx37zcgj11iy5ss5j9zqhli4",
"depends": ["IHW", "MsCoreUtils", "MultiAssayExperiment", "QFeatures", "RColorBrewer", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "ggplot2", "ggrepel", "matrixStats", "metapod", "nipals"]
},
"scran": {
"name": "scran",
"version": "1.38.0",
"sha256": "1ac4fxj5adqrsgpcpqhk9sxlagaaq2w577xq751kqvxs54hj63n4",
"depends": ["BH", "BiocGenerics", "BiocParallel", "BiocSingular", "DelayedArray", "Matrix", "MatrixGenerics", "Rcpp", "S4Arrays", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "beachmat", "bluster", "dqrng", "edgeR", "igraph", "limma", "metapod", "scuttle", "statmod"]
},
"scrapper": {
"name": "scrapper",
"version": "1.4.0",
"sha256": "16lvbwby98zinykh6ybxwiswyv7072pmk9lv8sbi7mfqlh0agzfz",
"depends": ["BiocNeighbors", "DelayedArray", "Rcpp", "Rigraphlib", "assorthead", "beachmat"]
},
"screenCounter": {
"name": "screenCounter",
"version": "1.10.0",
"sha256": "11d17blwgrifq5acj93sd5zy1ri0ygrzja8cw82dwnihrb30zmrq",
"depends": ["BiocParallel", "Rcpp", "S4Vectors", "SummarizedExperiment"]
},
"scruff": {
"name": "scruff",
"version": "1.28.0",
"sha256": "0qm43s8jk601xl6rqqqsgycilnpk9a45rlwm7qg9fc0729jrwp81",
"depends": ["AnnotationDbi", "BiocGenerics", "BiocParallel", "Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "Rsamtools", "Rsubread", "S4Vectors", "ShortRead", "SingleCellExperiment", "SummarizedExperiment", "data_table", "ggbio", "ggplot2", "ggthemes", "parallelly", "patchwork", "plyr", "rtracklayer", "scales", "stringdist", "txdbmaker"]
},
"scry": {
"name": "scry",
"version": "1.22.0",
"sha256": "1sffz2g1wqh8g2k21j10l87lbdff134sfcvg7b9xnaqicakly51l",
"depends": ["BiocSingular", "DelayedArray", "Matrix", "SingleCellExperiment", "SummarizedExperiment", "glmpca"]
},
"scuttle": {
"name": "scuttle",
"version": "1.20.0",
"sha256": "1m235brp8blyzx1z0j3acqgmssjhp2jnpb72i3a3c1f7nd225qaj",
"depends": ["BiocGenerics", "BiocParallel", "DelayedArray", "GenomicRanges", "Matrix", "MatrixGenerics", "Rcpp", "S4Arrays", "S4Vectors", "SingleCellExperiment", "SparseArray", "SummarizedExperiment", "beachmat"]
},
"scviR": {
"name": "scviR",
"version": "1.10.0",
"sha256": "047y1drrpn6g5s8li34kcspgmy9pv7l2bclfxhxrrm0f5d6w6avh",
"depends": ["BiocFileCache", "MatrixGenerics", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "basilisk", "limma", "pheatmap", "reticulate", "scater", "shiny"]
},
"seahtrue": {
"name": "seahtrue",
"version": "1.4.0",
"sha256": "16j5l6gw8m7cwh5hwfmg4cr7qrw4wchpp93pckjgx2wznchkylz6",
"depends": ["RColorBrewer", "cli", "colorspace", "dplyr", "forcats", "ggplot2", "ggridges", "glue", "janitor", "logger", "lubridate", "purrr", "readr", "readxl", "rlang", "scales", "stringr", "tibble", "tidyr", "tidyxl", "validate"]
},
"sechm": {
"name": "sechm",
"version": "1.18.0",
"sha256": "0zjmz0s7z5wpfzf2w3rrfh8gq03m3l42kzha7h6x8wv7qx2clzf0",
"depends": ["ComplexHeatmap", "S4Vectors", "SummarizedExperiment", "circlize", "matrixStats", "randomcoloR", "seriation"]
},
"segmentSeq": {
"name": "segmentSeq",
"version": "2.44.0",
"sha256": "06wwpk0l3zy2xajagxdhccnynpb8wqsj3ksdf4vm010a41rlqiwm",
"depends": ["GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "ShortRead", "abind", "baySeq"]
},
"segmenter": {
"name": "segmenter",
"version": "1.16.0",
"sha256": "12ss0b59xcv6mhrfiway6k7cvgsgxlh71jjv8mvlv66gd5jxlxvj",
"depends": ["ChIPseeker", "ComplexHeatmap", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment", "bamsignals", "chromhmmData"]
},
"selectKSigs": {
"name": "selectKSigs",
"version": "1.22.0",
"sha256": "12w82vm9ha1rbirwc361w2x719bskn53mrfaarm6ndcr37xz6lzl",
"depends": ["HiLDA", "Rcpp", "gtools", "magrittr"]
},
"semisup": {
"name": "semisup",
"version": "1.34.0",
"sha256": "1ppy36h6qrrya4rwa7mz2bmrn1izj1397mrpx151y4vmniijf9v7",
"depends": ["VGAM"]
},
"seq_hotSPOT": {
"name": "seq.hotSPOT",
"version": "1.10.0",
"sha256": "18a71gzl76wdmzckpvzg131nyxzkwzsdhny5n24ngjwgp6gg9q4k",
"depends": ["R_utils", "hash"]
},
"seqCAT": {
"name": "seqCAT",
"version": "1.32.0",
"sha256": "1di2xcrsqjwcxzw6w93a777vfahnwcqxrfgnav3vagc11bdc99ri",
"depends": ["GenomeInfoDb", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment", "VariantAnnotation", "dplyr", "ggplot2", "rlang", "rtracklayer", "scales", "tidyr"]
},
"seqLogo": {
"name": "seqLogo",
"version": "1.76.0",
"sha256": "189zhnm7rx0lya1xsn89as2c6awkidv641rri7w39ds0kygcy8x4",
"depends": []
},
"seqPattern": {
"name": "seqPattern",
"version": "1.42.0",
"sha256": "107l52mv68bpmjrhfgjm94wqxc3bqz1vhr2hd8rn6jzlwbn6bijj",
"depends": ["Biostrings", "GenomicRanges", "IRanges", "KernSmooth", "plotrix"]
},
"seqcombo": {
"name": "seqcombo",
"version": "1.32.0",
"sha256": "12xf0cyrmbp4ybvc48yw96ggh5f8354ag065qm76g324zfd3c9iy",
"depends": ["ggplot2", "igraph", "yulab_utils"]
},
"seqsetvis": {
"name": "seqsetvis",
"version": "1.30.0",
"sha256": "080njbczm82xy65z3lz1v5fxcvb5l4qamfjnxw73ib3by3wdskzr",
"depends": ["GenomicAlignments", "GenomicRanges", "IRanges", "RColorBrewer", "Rsamtools", "S4Vectors", "Seqinfo", "UpSetR", "cowplot", "data_table", "eulerr", "ggplot2", "ggplotify", "limma", "pbapply", "pbmcapply", "png", "rtracklayer", "scales"]
},
"sesame": {
"name": "sesame",
"version": "1.28.0",
"sha256": "0268p9yvzsnrjjbmbyqzhz9vnc6227200639kyn7yi2daa6fkzav",
"depends": ["BiocFileCache", "BiocParallel", "GenomicRanges", "IRanges", "MASS", "S4Vectors", "Seqinfo", "SummarizedExperiment", "dplyr", "ggplot2", "preprocessCore", "readr", "reshape2", "sesameData", "stringr", "tibble", "wheatmap"]
},
"sevenC": {
"name": "sevenC",
"version": "1.30.0",
"sha256": "1sxydda3czgj2schk2wlpyxcms4p999ywxj1k3rvqb0jssxl8cfi",
"depends": ["BiocGenerics", "GenomicRanges", "IRanges", "InteractionSet", "S4Vectors", "Seqinfo", "boot", "data_table", "purrr", "readr", "rtracklayer"]
},
"sevenbridges": {
"name": "sevenbridges",
"version": "1.40.0",
"sha256": "1kayxyhx3j9ni7cy8lynrnk8s05nckc8cj5x3nzhzqg6i58dddcx",
"depends": ["S4Vectors", "curl", "data_table", "docopt", "httr", "jsonlite", "objectProperties", "stringr", "uuid", "yaml"]
},
"shinyDSP": {
"name": "shinyDSP",
"version": "1.2.0",
"sha256": "01d2y1knx34zc7afrd18s4macxb3x4vksfrwnd4md9dmfrdayxn3",
"depends": ["AnnotationHub", "BiocGenerics", "ComplexHeatmap", "DT", "ExperimentHub", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "bsicons", "bslib", "circlize", "cowplot", "dplyr", "edgeR", "ggplot2", "ggpubr", "ggrepel", "htmltools", "limma", "magrittr", "pals", "readr", "scales", "scater", "shiny", "shinyWidgets", "shinycssloaders", "shinyjs", "shinyvalidate", "standR", "stringr", "tibble", "tidyr", "withr"]
},
"shinyMethyl": {
"name": "shinyMethyl",
"version": "1.46.0",
"sha256": "1p3hphp5b3r8wax2hhlkb1ifzqhqwl7yxnsjn4c2mhsi4im2ych0",
"depends": ["Biobase", "BiocGenerics", "MatrixGenerics", "RColorBrewer", "htmltools", "minfi", "shiny"]
},
"shinybiocloader": {
"name": "shinybiocloader",
"version": "1.0.0",
"sha256": "0hzkqbibmv8zsychb09babp4x895smvwfs8dpn75ic3ri7fx806k",
"depends": ["htmltools", "shiny"]
},
"shinyepico": {
"name": "shinyepico",
"version": "1.18.0",
"sha256": "0d4v6jir613fmqvmcz9s3y9fpdamj0h8mbdnqkxf60z2k1881vdr",
"depends": ["DT", "GenomicRanges", "data_table", "doParallel", "dplyr", "foreach", "ggplot2", "gplots", "heatmaply", "limma", "minfi", "plotly", "reshape2", "rlang", "rmarkdown", "rtracklayer", "shiny", "shinyWidgets", "shinycssloaders", "shinyjs", "shinythemes", "statmod", "tidyr", "zip"]
},
"sigFeature": {
"name": "sigFeature",
"version": "1.28.0",
"sha256": "0m0mqrg5hy0r6iaj7swnhb5s8x6j99rpagc38kynh4vahb6picq9",
"depends": ["BiocParallel", "Matrix", "RColorBrewer", "SparseM", "SummarizedExperiment", "biocViews", "e1071", "nlme", "openxlsx", "pheatmap"]
},
"siggenes": {
"name": "siggenes",
"version": "1.84.0",
"sha256": "1rz5yi9lb5qkw6ix0sv6yj3533wxvvwwpb0955lzfm5w06r46sff",
"depends": ["Biobase", "multtest", "scrime"]
},
"sights": {
"name": "sights",
"version": "1.36.0",
"sha256": "0awmi684h1gdv9a1yyz06yrdw6c81af54fw79bddwmf5yxfaxkcs",
"depends": ["MASS", "ggplot2", "lattice", "qvalue", "reshape2"]
},
"signatureSearch": {
"name": "signatureSearch",
"version": "1.24.0",
"sha256": "1c8jykqfsbpmpn52svaqkg2da2gzdyyfd96hm1sfwx15z02sg9cw",
"depends": ["AnnotationDbi", "BiocGenerics", "BiocParallel", "DOSE", "DelayedArray", "ExperimentHub", "GSEABase", "HDF5Array", "Matrix", "RSQLite", "Rcpp", "SummarizedExperiment", "clusterProfiler", "data_table", "dplyr", "fastmatch", "fgsea", "ggplot2", "magrittr", "org_Hs_eg_db", "qvalue", "reactome_db", "readr", "reshape2", "rhdf5", "scales", "tibble", "visNetwork"]
},
"signeR": {
"name": "signeR",
"version": "2.12.0",
"sha256": "1nlhxsq6v6nyadmfkyvibvgc9zg0r0s6lr5h60kvc1337ar8qzd4",
"depends": ["BSgenome", "BiocFileCache", "BiocGenerics", "Biostrings", "DT", "GenomeInfoDb", "GenomicRanges", "IRanges", "MASS", "NMF", "PMCMRplus", "RColorBrewer", "Rcpp", "RcppArmadillo", "VGAM", "VariantAnnotation", "ada", "broom", "bsplus", "class", "clue", "cowplot", "dplyr", "e1071", "future", "future_apply", "ggplot2", "ggpubr", "glmnet", "kknn", "listenv", "magrittr", "maxstat", "nloptr", "pROC", "pheatmap", "ppclust", "proxy", "pvclust", "randomForest", "readr", "reshape2", "rtracklayer", "scales", "shiny", "shinyWidgets", "shinycssloaders", "shinydashboard", "survival", "survminer", "tibble", "tidyr"]
},
"signifinder": {
"name": "signifinder",
"version": "1.12.0",
"sha256": "0apncbw90r1svawz7g76w13ai7djf04709mmr0anb27m1i74aa34",
"depends": ["AnnotationDbi", "BiocGenerics", "ComplexHeatmap", "DGEobj_utils", "GSVA", "IRanges", "RColorBrewer", "SpatialExperiment", "SummarizedExperiment", "TxDb_Hsapiens_UCSC_hg19_knownGene", "TxDb_Hsapiens_UCSC_hg38_knownGene", "consensusOV", "cowplot", "dplyr", "ensembldb", "ggplot2", "ggridges", "magrittr", "matrixStats", "maxstat", "openair", "org_Hs_eg_db", "patchwork", "scales", "survival", "survminer", "viridis"]
},
"sigsquared": {
"name": "sigsquared",
"version": "1.42.0",
"sha256": "1qm25yx8ykf35alqz8z0ky7akhc2zyzm568kfms6ravd0p41nyrk",
"depends": ["Biobase", "survival"]
},
"simPIC": {
"name": "simPIC",
"version": "1.6.0",
"sha256": "1qr70cz04grmawsz3ir5ycaj74782c66mf2ing5zlndh3z3vv696",
"depends": ["BiocGenerics", "Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "actuar", "checkmate", "edgeR", "fitdistrplus", "matrixStats", "rlang", "scales", "scuttle", "withr"]
},
"similaRpeak": {
"name": "similaRpeak",
"version": "1.42.0",
"sha256": "0s6602qzk8m9rnmifg17hpxj9f9i77lasg77ls7595n8ykb1l2kc",
"depends": ["R6"]
},
"simona": {
"name": "simona",
"version": "1.8.0",
"sha256": "0fv5qqlchbij486w2j7r2yndj2c497f4id0skq3r8pp735lgc84j",
"depends": ["ComplexHeatmap", "GetoptLong", "GlobalOptions", "Polychrome", "Rcpp", "S4Vectors", "circlize", "fastmatch", "igraph", "matrixStats", "shiny", "xml2"]
},
"simpleSeg": {
"name": "simpleSeg",
"version": "1.12.0",
"sha256": "1g0x3qc5ys0clwqw7vny7ld42n894xwpabxxnkyln610z30ifb6q",
"depends": ["BiocParallel", "EBImage", "S4Vectors", "SummarizedExperiment", "cytomapper", "spatstat_geom", "terra"]
},
"simplifyEnrichment": {
"name": "simplifyEnrichment",
"version": "2.4.0",
"sha256": "1vz0pjn8j3ia6gcwdlr1c8cxvdbhf6rscag1r7h43gj3fxmsi9m0",
"depends": ["AnnotationDbi", "ComplexHeatmap", "GO_db", "GetoptLong", "GlobalOptions", "circlize", "clue", "cluster", "colorspace", "digest", "simona", "slam", "tm"]
},
"sincell": {
"name": "sincell",
"version": "1.42.0",
"sha256": "1bnlw74nsi4as0x7azcjz52p9f3dw9zlhmc6iz37lvjkw75yany9",
"depends": ["MASS", "Rcpp", "Rtsne", "TSP", "cluster", "entropy", "fastICA", "fields", "ggplot2", "igraph", "proxy", "reshape2", "scatterplot3d", "statmod"]
},
"singleCellTK": {
"name": "singleCellTK",
"version": "2.20.0",
"sha256": "17my62dn584mvzzsnzv1m4h95lj22bsp280pypxab6f2g7achs5a",
"depends": ["AnnotationHub", "Biobase", "BiocParallel", "ComplexHeatmap", "DESeq2", "DT", "DelayedArray", "DelayedMatrixStats", "DropletUtils", "ExperimentHub", "GSEABase", "GSVA", "GSVAdata", "KernSmooth", "MAST", "Matrix", "ROCR", "R_utils", "Rtsne", "S4Vectors", "Seurat", "SingleCellExperiment", "SingleR", "SoupX", "SummarizedExperiment", "TENxPBMCData", "TSCAN", "TrajectoryUtils", "VAM", "anndata", "ape", "batchelor", "celda", "celldex", "circlize", "cluster", "colorspace", "colourpicker", "cowplot", "data_table", "dplyr", "eds", "enrichR", "ensembldb", "fields", "ggplot2", "ggplotify", "ggrepel", "ggtree", "gridExtra", "igraph", "lifecycle", "limma", "magrittr", "matrixStats", "metap", "msigdbr", "multtest", "plotly", "plyr", "reshape2", "reticulate", "rlang", "rmarkdown", "scDblFinder", "scMerge", "scRNAseq", "scater", "scds", "scran", "scuttle", "shiny", "shinyalert", "shinycssloaders", "shinyjs", "stringr", "sva", "tibble", "tidyr", "tximport", "withr", "yaml", "zellkonverter", "zinbwave"]
},
"singscore": {
"name": "singscore",
"version": "1.30.0",
"sha256": "1cyfhwwwq77ww5zdav17qzwh171h40dzi2plrzxqly808c5xxlqx",
"depends": ["Biobase", "BiocParallel", "GSEABase", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "edgeR", "ggplot2", "ggrepel", "magrittr", "matrixStats", "plotly", "plyr", "reshape", "reshape2", "tidyr"]
},
"sitadela": {
"name": "sitadela",
"version": "1.18.0",
"sha256": "118hxyj6m2j5c3vz8c00nf2lh7hyz39vvmm0zpnsmnp84g5dlwmz",
"depends": ["Biobase", "BiocGenerics", "Biostrings", "GenomicFeatures", "GenomicRanges", "IRanges", "RSQLite", "Rsamtools", "S4Vectors", "Seqinfo", "biomaRt", "rtracklayer", "txdbmaker"]
},
"sitePath": {
"name": "sitePath",
"version": "1.26.0",
"sha256": "1bldgb3jxx5jbk9fl0mc7hhdxscs73rbclchjj6695jl9rf267g4",
"depends": ["RColorBrewer", "Rcpp", "ape", "aplot", "ggplot2", "ggrepel", "ggtree", "gridExtra", "seqinr", "tidytree"]
},
"sizepower": {
"name": "sizepower",
"version": "1.80.0",
"sha256": "054qgchvy9arxvdl3bwqiasn9x9p5cf9q79h5y95m06v82yp0iva",
"depends": []
},
"sketchR": {
"name": "sketchR",
"version": "1.6.0",
"sha256": "1hpnpspq9hiyx9yphcbz0z7ziq5fcj3nbci5zp3dnpiszpm7ahan",
"depends": ["Biobase", "DelayedArray", "basilisk", "dplyr", "ggplot2", "reticulate", "rlang", "scales"]
},
"skewr": {
"name": "skewr",
"version": "1.42.0",
"sha256": "1fp9r69nnr6zn2awbqx9gyrlyg1i4v91yg1087pd49i33zs9nsdv",
"depends": ["IlluminaHumanMethylation450kmanifest", "RColorBrewer", "S4Vectors", "methylumi", "minfi", "mixsmsn", "wateRmelon"]
},
"slalom": {
"name": "slalom",
"version": "1.32.0",
"sha256": "04l0pw0nm1s6j5s8jh577nzhsm38y7a4rvalplzcy8g9ppj64p5l",
"depends": ["BH", "GSEABase", "Rcpp", "RcppArmadillo", "SingleCellExperiment", "SummarizedExperiment", "ggplot2", "rsvd"]
},
"slingshot": {
"name": "slingshot",
"version": "2.18.0",
"sha256": "1gsz2a3hsc5yc4kyxkqfb6dbyfmdp41bmnas714pvabnwrcapjwd",
"depends": ["S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "TrajectoryUtils", "igraph", "matrixStats", "princurve"]
},
"smartid": {
"name": "smartid",
"version": "1.6.0",
"sha256": "0iqnk5hpin79l43gzr6s29y7y79cd0w88lggrxsb2612nygpadd5",
"depends": ["Matrix", "SummarizedExperiment", "dplyr", "ggplot2", "mclust", "mixtools", "sparseMatrixStats", "tidyr"]
},
"smoothclust": {
"name": "smoothclust",
"version": "1.6.0",
"sha256": "1mrz1z0ah33jksrhiyww9xwlk50sgb57hlqhbffi455lkjs4vj2i",
"depends": ["BiocNeighbors", "Matrix", "SpatialExperiment", "SummarizedExperiment"]
},
"smoppix": {
"name": "smoppix",
"version": "1.2.0",
"sha256": "0xpv3x32jzfl9z82v6cayfm0fha64c27pv8r6sd9jzpffblkimxv",
"depends": ["BiocParallel", "Rcpp", "Rdpack", "Rfast", "SpatialExperiment", "SummarizedExperiment", "extraDistr", "ggplot2", "lme4", "lmerTest", "openxlsx", "scam", "spatstat_geom", "spatstat_model", "spatstat_random"]
},
"snapcount": {
"name": "snapcount",
"version": "1.22.0",
"sha256": "1v47chrbwghyxjmwp5jbzgjkgvrbj3ccy3kzwrqx1cv1sf0n5xgj",
"depends": ["GenomicRanges", "IRanges", "Matrix", "R6", "SummarizedExperiment", "assertthat", "data_table", "httr", "jsonlite", "magrittr", "purrr", "rlang", "stringr"]
},
"snifter": {
"name": "snifter",
"version": "1.20.0",
"sha256": "04ln62j4pa8fb3b46vbnrx729j05agak7n6zgalbdbwwyjs6r6sn",
"depends": ["assertthat", "basilisk", "irlba", "reticulate"]
},
"snm": {
"name": "snm",
"version": "1.58.0",
"sha256": "06lx70dw0iyqkvq1ps5hign6nldc88krxgx66xkvr7sk7v7fy3n9",
"depends": ["corpcor", "lme4"]
},
"snpStats": {
"name": "snpStats",
"version": "1.60.0",
"sha256": "0fyh1qzhfkiqdksxcwpr76mmlk13c6mi0m27kcdr5frb77kv1sq9",
"depends": ["BiocGenerics", "Matrix", "survival"]
},
"sosta": {
"name": "sosta",
"version": "1.2.0",
"sha256": "12hf6hyvip9ll2ipzhc9xs2s3y97gzwr55n6f23hhysd0n4qn9ds",
"depends": ["EBImage", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "dplyr", "ggplot2", "patchwork", "rlang", "sf", "smoothr", "spatstat_explore", "spatstat_geom", "spatstat_random", "terra"]
},
"spARI": {
"name": "spARI",
"version": "1.0.0",
"sha256": "10vspwy7882wlmlsm873sz8rah4zlm5mzwzz6y2cihry342hyqkp",
"depends": ["BiocParallel", "Matrix", "Rcpp", "SpatialExperiment", "SummarizedExperiment"]
},
"spaSim": {
"name": "spaSim",
"version": "1.12.0",
"sha256": "1a5fb8d0yplg3chs9k4zrk12cdpzras37xnwv8372vzh75g2r1bc",
"depends": ["RANN", "SpatialExperiment", "SummarizedExperiment", "dplyr", "ggplot2", "spatstat_geom", "spatstat_random"]
},
"spacexr": {
"name": "spacexr",
"version": "1.2.0",
"sha256": "1bgvm4gxb10k4p3q9d299xry803zskxmaxcxdkqy25kw5wc9rvsq",
"depends": ["BiocFileCache", "BiocParallel", "Matrix", "SpatialExperiment", "SummarizedExperiment", "ggplot2", "httr", "memoise", "quadprog", "scatterpie"]
},
"sparrow": {
"name": "sparrow",
"version": "1.16.0",
"sha256": "0zv0sccv0rm6jdyvzy4dgi3gir0zxb7r2pdl4g7qfms62ipim3bm",
"depends": ["BiocGenerics", "BiocParallel", "BiocSet", "ComplexHeatmap", "DelayedMatrixStats", "GSEABase", "Matrix", "babelgene", "checkmate", "circlize", "data_table", "edgeR", "ggplot2", "irlba", "limma", "plotly", "viridis"]
},
"sparseMatrixStats": {
"name": "sparseMatrixStats",
"version": "1.22.0",
"sha256": "15kychrmj4r4mmyjygwi69ayfm3fwfyjfbp475xylnwixyr5v7s4",
"depends": ["Matrix", "MatrixGenerics", "Rcpp", "matrixStats"]
},
"sparsenetgls": {
"name": "sparsenetgls",
"version": "1.28.0",
"sha256": "1bx8ypv17paz5kvbqmk2vd5cy1iciqmhprlrkhvl7v0shw61kcgc",
"depends": ["MASS", "Matrix", "glmnet", "huge"]
},
"spatialDE": {
"name": "spatialDE",
"version": "1.16.0",
"sha256": "1v9kp5qd99zm5zmf18xinki9jjc5xk3b741x2fz3vbc5dv3gxzaz",
"depends": ["Matrix", "SpatialExperiment", "SummarizedExperiment", "basilisk", "checkmate", "ggplot2", "ggrepel", "gridExtra", "reticulate", "scales"]
},
"spatialFDA": {
"name": "spatialFDA",
"version": "1.2.0",
"sha256": "1ddz26xncw3wmdy0jjxkaymrxgwd3i3rdcygq867zijrqqz7m0w1",
"depends": ["ExperimentHub", "S4Vectors", "SpatialExperiment", "SummarizedExperiment", "dplyr", "fda", "ggplot2", "patchwork", "purrr", "refund", "scales", "spatstat_explore", "spatstat_geom", "tidyr"]
},
"spatialSimGP": {
"name": "spatialSimGP",
"version": "1.4.0",
"sha256": "1xixl5ih67lkr254mdmc22qp5x6q6qm4krdpcxxjbljzfqw4yksd",
"depends": ["MASS", "SpatialExperiment", "SummarizedExperiment"]
},
"specL": {
"name": "specL",
"version": "1.44.0",
"sha256": "1bdsardyjf0gywjfgcrk2m3fmak5bd9brysn9cz7i7d9720xqs3y",
"depends": ["DBI", "RSQLite", "protViz", "seqinr"]
},
"speckle": {
"name": "speckle",
"version": "1.10.0",
"sha256": "0wn4myrbxamy7qqwzvfq8lb24ayxs1y6hh865v4rrjqdx6flww74",
"depends": ["Seurat", "SingleCellExperiment", "edgeR", "ggplot2", "limma"]
},
"spicyR": {
"name": "spicyR",
"version": "1.22.0",
"sha256": "00ljikrz4w3drqsfm8krm72nc1sg8wm0h18kfrifvfa6b9baydv0",
"depends": ["BiocParallel", "ClassifyR", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "cli", "concaveman", "coxme", "data_table", "dplyr", "ggforce", "ggh4x", "ggnewscale", "ggplot2", "ggthemes", "lifecycle", "lmerTest", "magrittr", "pheatmap", "rlang", "scales", "scam", "simpleSeg", "spatstat_explore", "spatstat_geom", "survival", "tibble", "tidyr"]
},
"spikeLI": {
"name": "spikeLI",
"version": "2.70.0",
"sha256": "09jbaxyx98haazh8hag0l2s8dzmn9djixvk4dvfs3ld9p80wknhg",
"depends": []
},
"spiky": {
"name": "spiky",
"version": "1.16.0",
"sha256": "02n2k80n6pwgdzllhf7kf38hb99hb43p2hbzw5k479brhjv72ayb",
"depends": ["BSgenome", "Biostrings", "BlandAltmanLeh", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "bamlss", "ggplot2", "scales"]
},
"spillR": {
"name": "spillR",
"version": "1.6.0",
"sha256": "1ac72p03xlzr4kg2wny7p17smrvprs6b5ng483x7369rsx7xf3di",
"depends": ["CATALYST", "S4Vectors", "SummarizedExperiment", "dplyr", "ggplot2", "spatstat_univar", "tibble", "tidyr", "tidyselect"]
},
"spkTools": {
"name": "spkTools",
"version": "1.66.0",
"sha256": "1rgqfnicbv7sf5fggpdchkqq0x3z08qhrcrl469182dcmz09m966",
"depends": ["Biobase", "RColorBrewer", "gtools"]
},
"splatter": {
"name": "splatter",
"version": "1.34.0",
"sha256": "0p9hr9p8b6n2q0mm1ihxydv53i5hn48pw03z4b50gz4d4w5nsqkv",
"depends": ["BiocGenerics", "BiocParallel", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "checkmate", "crayon", "edgeR", "fitdistrplus", "locfit", "matrixStats", "rlang", "scuttle", "withr"]
},
"splineTimeR": {
"name": "splineTimeR",
"version": "1.38.0",
"sha256": "11yqzli5v6vgkwxj5m6aw4h5m3p3x65nzyn90rhyxfsly46zldkr",
"depends": ["Biobase", "FIs", "GSEABase", "GeneNet", "gtools", "igraph", "limma", "longitudinal"]
},
"splots": {
"name": "splots",
"version": "1.76.0",
"sha256": "0b5n6gy87q1yg29a594avq2d7qssk0s3b33qd0ky62lb8innra4r",
"depends": ["RColorBrewer"]
},
"spoon": {
"name": "spoon",
"version": "1.6.0",
"sha256": "145h823ax4hc8a9y8vsd1s4gli47kcb6hcxffa0wk989yb249zj9",
"depends": ["BRISC", "BiocParallel", "Matrix", "SpatialExperiment", "SummarizedExperiment", "nnSVG", "scuttle"]
},
"spqn": {
"name": "spqn",
"version": "1.22.0",
"sha256": "1cj1b5zx5mb1mwi1apk8655hh76xjm6cr2wwrdn1df68z08pnspc",
"depends": ["BiocGenerics", "SummarizedExperiment", "ggplot2", "ggridges", "matrixStats"]
},
"squallms": {
"name": "squallms",
"version": "1.4.0",
"sha256": "13v0cwxjrspfhpcnm3v99kfa99vpdxkyy2045k9rrig5xjszwvzy",
"depends": ["MSnbase", "MsExperiment", "RaMS", "caret", "data_table", "dplyr", "ggplot2", "keys", "plotly", "shiny", "tibble", "tidyr", "xcms"]
},
"srnadiff": {
"name": "srnadiff",
"version": "1.30.0",
"sha256": "1b2xg8xmh00zsbnrhpl5mak52w3pmw67jnx57hkdm55kxdzhdjq3",
"depends": ["BiocManager", "BiocParallel", "BiocStyle", "DESeq2", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "Gviz", "IRanges", "Rcpp", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "edgeR", "rtracklayer"]
},
"ssPATHS": {
"name": "ssPATHS",
"version": "1.24.0",
"sha256": "1gn7j7hb030w9w0aqg9kd8i3dcanag73jjxvjm04ql4v0cvvclz2",
"depends": ["MESS", "ROCR", "SummarizedExperiment", "dml"]
},
"sscu": {
"name": "sscu",
"version": "2.40.0",
"sha256": "0p12i809pxvikddpamr8a8ri765aw8w76q98wd0f0c8x44xdy46r",
"depends": ["BiocGenerics", "Biostrings", "seqinr"]
},
"ssize": {
"name": "ssize",
"version": "1.84.0",
"sha256": "1z7yw4apg4j8as6ygf9dm8rgvjfvp67awks03hjw8a5x0ym7gv5j",
"depends": ["gdata", "xtable"]
},
"ssrch": {
"name": "ssrch",
"version": "1.26.0",
"sha256": "1z94gq0d706c372zd7kmakwzxzjkdzdf7a4sjdd08q8yds973vrb",
"depends": ["DT", "shiny"]
},
"ssviz": {
"name": "ssviz",
"version": "1.44.0",
"sha256": "0q029f4cgwa0jc0dcpz8v10779gwnz0c4ps6fls6miyxay5lkizw",
"depends": ["Biostrings", "RColorBrewer", "Rsamtools", "ggplot2", "reshape"]
},
"stJoincount": {
"name": "stJoincount",
"version": "1.12.0",
"sha256": "1m2crwvr5nca9358q8mwj2i53lci7lyn553kbj9c1wj4f5wwi9jy",
"depends": ["Seurat", "SpatialExperiment", "SummarizedExperiment", "dplyr", "ggplot2", "magrittr", "pheatmap", "raster", "sp", "spdep"]
},
"stPipe": {
"name": "stPipe",
"version": "1.0.0",
"sha256": "0x20phlrv0mlyr9q7hs5pdz9vcm1lvh0qdjp3z6kry53l4cqql0n",
"depends": ["DropletUtils", "Rcpp", "Rhdf5lib", "Rhtslib", "Rsubread", "Rtsne", "Seurat", "SeuratObject", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "basilisk", "data_table", "dplyr", "ggplot2", "pbmcapply", "reticulate", "rmarkdown", "scPipe", "shiny", "testthat", "umap", "yaml"]
},
"stageR": {
"name": "stageR",
"version": "1.32.0",
"sha256": "1jivk3an5dh7hc0k21mg0pldpyfjwby09bj9r9ji75r9fwp20s6m",
"depends": ["SummarizedExperiment"]
},
"standR": {
"name": "standR",
"version": "1.14.0",
"sha256": "0w9p8lndd5daadw7q4yr812ww3npvmb9awjxwwkdjpy0qrkvm5ck",
"depends": ["Biobase", "BiocGenerics", "RUVSeq", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "dplyr", "edgeR", "ggalluvial", "ggplot2", "limma", "mclustcomp", "patchwork", "readr", "rlang", "ruv", "tibble", "tidyr"]
},
"statTarget": {
"name": "statTarget",
"version": "1.40.0",
"sha256": "1ch2gah8bivamm78d3gqa9abr91290nb45d1gl84l82hi00lin7b",
"depends": ["ROC", "impute", "pdist", "pls", "plyr", "randomForest", "rrcov"]
},
"stepNorm": {
"name": "stepNorm",
"version": "1.82.0",
"sha256": "1pab1ppdx3zj8s4j19yk54nmify91191q4mqf9b7y3kdv6m4kkhf",
"depends": ["MASS", "marray"]
},
"strandCheckR": {
"name": "strandCheckR",
"version": "1.28.0",
"sha256": "1djwigg75shja0nrkh63pwaaigpawwisywzyk5wfrkv1g30jr8a4",
"depends": ["BiocGenerics", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "TxDb_Hsapiens_UCSC_hg38_knownGene", "dplyr", "ggplot2", "gridExtra", "reshape2", "rlang", "stringr", "tidyselect"]
},
"subSeq": {
"name": "subSeq",
"version": "1.40.0",
"sha256": "1cyvjbhis1fc0qb9iskjggmik76bmjizb1mn7b3dkiqkdkhns96p",
"depends": ["Biobase", "data_table", "digest", "dplyr", "ggplot2", "magrittr", "qvalue", "tidyr"]
},
"supersigs": {
"name": "supersigs",
"version": "1.18.0",
"sha256": "01iq5xss5xyj88bkpf3vhcb8rh55bkcgm388055wc9kqyh2c0qvv",
"depends": ["Biostrings", "SummarizedExperiment", "assertthat", "caret", "dplyr", "rlang", "rsample", "tidyr"]
},
"surfaltr": {
"name": "surfaltr",
"version": "1.16.0",
"sha256": "0cx7qh51n57d6zwc4s589c3jc51l7rzrw8qhjhm197w9yyvsz0p1",
"depends": ["Biostrings", "biomaRt", "dplyr", "ggplot2", "httr", "msa", "protr", "readr", "seqinr", "stringr", "testthat", "xml2"]
},
"survClust": {
"name": "survClust",
"version": "1.4.0",
"sha256": "0462yjzrdwlm4bvxyh2vpijjrphkva36v4mhv5014ifrgdvg7i6k",
"depends": ["MultiAssayExperiment", "Rcpp", "pdist", "survival"]
},
"survcomp": {
"name": "survcomp",
"version": "1.60.0",
"sha256": "0fhi7kjcd26shx0qh1j8akcbiwyaxb5b7jzk1hyzmdqf4ffs98kw",
"depends": ["KernSmooth", "SuppDists", "bootstrap", "ipred", "prodlim", "rmeta", "survival", "survivalROC"]
},
"survtype": {
"name": "survtype",
"version": "1.26.0",
"sha256": "1c63fn4m7cg0vgj1rxxgrfxx002m331dprzv2zkfpg0ip1k5dmkm",
"depends": ["SummarizedExperiment", "clustvarsel", "pheatmap", "survival", "survminer"]
},
"sva": {
"name": "sva",
"version": "3.58.0",
"sha256": "0q2j31lf4bm9karlj0fnd04rxbi6h0dk5n3rcjcb4vd69aj05bfg",
"depends": ["BiocParallel", "edgeR", "genefilter", "limma", "matrixStats", "mgcv"]
},
"svaNUMT": {
"name": "svaNUMT",
"version": "1.16.0",
"sha256": "00kxwi11s84sx7dfrsc40s52jg9izsyrxvl9x94qd4fdfxlg78as",
"depends": ["BiocGenerics", "Biostrings", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "S4Vectors", "Seqinfo", "StructuralVariantAnnotation", "VariantAnnotation", "assertthat", "dplyr", "pwalign", "rlang", "rtracklayer", "stringr"]
},
"svaRetro": {
"name": "svaRetro",
"version": "1.15.1",
"sha256": "0cb1d9h35q72058if30k1fixairvrvra0k9lcarg8kalav5x7467",
"depends": ["BiocGenerics", "Biostrings", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "S4Vectors", "Seqinfo", "StructuralVariantAnnotation", "VariantAnnotation", "assertthat", "dplyr", "rlang", "rtracklayer", "stringr"]
},
"swfdr": {
"name": "swfdr",
"version": "1.36.0",
"sha256": "132fdhnp78ns5d7g2q60lvax098bamnv2kz7rw5s2dk06fj2gdhi",
"depends": []
},
"switchBox": {
"name": "switchBox",
"version": "1.46.0",
"sha256": "1das904wcjx90spw7rzj0w2w8i070gf18150wliw61s0901yljba",
"depends": ["gplots", "pROC"]
},
"switchde": {
"name": "switchde",
"version": "1.36.0",
"sha256": "0174ajkl30fkp9f85vbk7crfigaq0gcqwqykd2rz6cxg83znvpx6",
"depends": ["SingleCellExperiment", "SummarizedExperiment", "dplyr", "ggplot2"]
},
"synapsis": {
"name": "synapsis",
"version": "1.16.0",
"sha256": "1b5shghlsiiga8vng4ijw3w0jbmnyx5bhk6rbf099h1603v9dyp7",
"depends": ["EBImage"]
},
"synergyfinder": {
"name": "synergyfinder",
"version": "3.18.0",
"sha256": "1mdaksmhdq96bf64lq2jg7n94mgh5iaa071cx2wmf9iq0pamnzy9",
"depends": ["SpatialExtremes", "dplyr", "drc", "furrr", "future", "ggforce", "ggplot2", "ggrepel", "gstat", "kriging", "lattice", "magrittr", "metR", "mice", "nleqslv", "pbapply", "plotly", "purrr", "reshape2", "sp", "stringr", "tidyr", "tidyverse", "vegan"]
},
"synlet": {
"name": "synlet",
"version": "2.10.0",
"sha256": "12l0g6684rjm8vrw1l5gzcdsp4217h68m5b6jjq8wpbzk89m1fif",
"depends": ["RColorBrewer", "RankProd", "data_table", "ggplot2", "magrittr", "patchwork"]
},
"syntenet": {
"name": "syntenet",
"version": "1.12.0",
"sha256": "0znmvqxy70yypfpm3bfhz9jdrw1ihr8vlim8mh19cwpkmlm87rd2",
"depends": ["BiocParallel", "Biostrings", "GenomicRanges", "RColorBrewer", "Rcpp", "ggnetwork", "ggplot2", "igraph", "intergraph", "pheatmap", "rlang", "testthat"]
},
"systemPipeR": {
"name": "systemPipeR",
"version": "2.16.0",
"sha256": "1mpwjz0r5cy2r5745b4splygg6jycfnfrqrca9vqic3bnpsrc6gf",
"depends": ["BiocGenerics", "Biostrings", "GenomicRanges", "Rsamtools", "S4Vectors", "ShortRead", "SummarizedExperiment", "crayon", "ggplot2", "htmlwidgets", "magrittr", "stringr", "yaml"]
},
"systemPipeShiny": {
"name": "systemPipeShiny",
"version": "1.20.0",
"sha256": "13a19n35gavrrnm8r0p7snl4cfjsb6nwhidyd5vv97bsj53dmvqw",
"depends": ["DT", "R6", "RSQLite", "assertthat", "bsplus", "crayon", "dplyr", "drawer", "ggplot2", "glue", "htmltools", "magrittr", "openssl", "plotly", "rlang", "rstudioapi", "shiny", "shinyAce", "shinyFiles", "shinyWidgets", "shinydashboard", "shinydashboardPlus", "shinyjqui", "shinyjs", "shinytoastr", "spsComps", "spsUtil", "stringr", "styler", "tibble", "vroom", "yaml"]
},
"systemPipeTools": {
"name": "systemPipeTools",
"version": "1.18.0",
"sha256": "1r1h14v9wrdxq7vnjhss7zax5hxygv215hp2y7r5lgzjfsh349ff",
"depends": ["DESeq2", "DT", "GGally", "Rtsne", "SummarizedExperiment", "ape", "dplyr", "ggplot2", "ggrepel", "ggtree", "glmpca", "magrittr", "pheatmap", "plotly", "tibble"]
},
"tLOH": {
"name": "tLOH",
"version": "1.18.0",
"sha256": "1qi4csdvwviz4dm9mdxigq8n0yp6axqzxi97d7dmp2hlyvz9y108",
"depends": ["GenomicRanges", "MatrixGenerics", "VariantAnnotation", "bestNormalize", "data_table", "depmixS4", "dplyr", "ggplot2", "naniar", "purrr", "scales", "stringr"]
},
"tRNA": {
"name": "tRNA",
"version": "1.28.0",
"sha256": "1c8q4i0xmbl3dl7ylid6wzw46l961pnrfb5pbv2jn31k1qc3ikif",
"depends": ["BiocGenerics", "Biostrings", "GenomicRanges", "IRanges", "Modstrings", "S4Vectors", "Structstrings", "XVector", "ggplot2", "scales", "stringr"]
},
"tRNAdbImport": {
"name": "tRNAdbImport",
"version": "1.28.0",
"sha256": "1p3q1vy8hx2f96zjmwgkpzv0q5vvivi2p54blrx1i99mc6ady2vc",
"depends": ["Biostrings", "GenomicRanges", "IRanges", "Modstrings", "S4Vectors", "Structstrings", "httr2", "stringr", "tRNA", "xml2"]
},
"tRNAscanImport": {
"name": "tRNAscanImport",
"version": "1.30.0",
"sha256": "1xdwmbgmcqya010kfy2d5wlih922wkb8al93x0bnsf3k2cjmwg5h",
"depends": ["BSgenome", "BiocGenerics", "Biostrings", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "Structstrings", "XVector", "rtracklayer", "stringr", "tRNA"]
},
"tRanslatome": {
"name": "tRanslatome",
"version": "1.48.0",
"sha256": "01lmjdj2mf5j6zf007wgan4sfw6sjf89kd1wr6q08bscv3z7m2l7",
"depends": ["Biobase", "DESeq2", "GOSemSim", "Heatplus", "RankProd", "anota", "edgeR", "gplots", "limma", "org_Hs_eg_db", "plotrix", "topGO"]
},
"tadar": {
"name": "tadar",
"version": "1.8.0",
"sha256": "1a5h8kayfcbghq4ifbala2hp2awx1vcn0ka20ff49c351x1s46j2",
"depends": ["BiocGenerics", "GenomicRanges", "Gviz", "IRanges", "MatrixGenerics", "Rsamtools", "S4Vectors", "Seqinfo", "VariantAnnotation", "ggplot2", "lifecycle", "rlang"]
},
"tanggle": {
"name": "tanggle",
"version": "1.16.0",
"sha256": "1w7cbz3jwxa2qhcvx9x0vbmsdxc0jsfdf1qp06h4p2lqg9kaqfvd",
"depends": ["ape", "dplyr", "ggplot2", "ggtree", "phangorn", "rlang"]
},
"target": {
"name": "target",
"version": "1.24.0",
"sha256": "0ndb8vwvwfjl0wwjr783ijdlgaipa61lihzx0ja92s9p8lwyx4nr",
"depends": ["BiocGenerics", "GenomicRanges", "IRanges", "matrixStats", "shiny"]
},
"tenXplore": {
"name": "tenXplore",
"version": "1.32.0",
"sha256": "08iayrc4415mcs0niy2bjs43zhni89d82p8h6bkj2zaaprivash5",
"depends": ["AnnotationDbi", "BiocFileCache", "SummarizedExperiment", "matrixStats", "ontoProc", "org_Mm_eg_db", "shiny"]
},
"terapadog": {
"name": "terapadog",
"version": "1.2.0",
"sha256": "1fzjcrbxfdq4i7d42bajnd3v24ygb7ckm4mnycwbwcns15km2lxj",
"depends": ["DESeq2", "KEGGREST", "biomaRt", "dplyr", "htmlwidgets", "plotly"]
},
"ternarynet": {
"name": "ternarynet",
"version": "1.54.0",
"sha256": "12fl6szk85h317xc5pxfw2szyz93005bvsnlwg5drars652r24fs",
"depends": ["BiocParallel", "igraph"]
},
"terraTCGAdata": {
"name": "terraTCGAdata",
"version": "1.14.0",
"sha256": "0a8m9672w3wribzb7ah3cdcq1d610s1m26zq90jrwfy6glbd5jyq",
"depends": ["AnVIL", "AnVILGCP", "BiocFileCache", "GenomicRanges", "MultiAssayExperiment", "RaggedExperiment", "S4Vectors", "TCGAutils", "dplyr", "readr", "tidyr"]
},
"tidyCoverage": {
"name": "tidyCoverage",
"version": "1.6.0",
"sha256": "01d50vh3vmfnzn55vpkvmjpkdw8q3qjll20bbhw5vbi5drcc08wk",
"depends": ["BiocIO", "BiocParallel", "GenomeInfoDb", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment", "cli", "dplyr", "fansi", "ggplot2", "pillar", "purrr", "rlang", "rtracklayer", "scales", "tidyr", "vctrs"]
},
"tidyFlowCore": {
"name": "tidyFlowCore",
"version": "1.4.0",
"sha256": "10gh3g5v9zpcky3i6hxy9kk648bcfpxxrjmfbfx44h1p7g62d4cs",
"depends": ["Biobase", "dplyr", "flowCore", "ggplot2", "purrr", "rlang", "stringr", "tibble", "tidyr"]
},
"tidySingleCellExperiment": {
"name": "tidySingleCellExperiment",
"version": "1.20.0",
"sha256": "033bwfygp97jn8dp9blw303mg9d00q4k0ps6w9040hc1af91x92r",
"depends": ["Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "cli", "dplyr", "ellipsis", "fansi", "ggplot2", "lifecycle", "magrittr", "pillar", "pkgconfig", "purrr", "rlang", "stringr", "tibble", "tidyr", "tidyselect", "ttservice", "vctrs"]
},
"tidySpatialExperiment": {
"name": "tidySpatialExperiment",
"version": "1.5.1",
"sha256": "0050syc762ff2mjx5sppl5f2v0qs9yhjigzxd7vp25kshm6jp5wg",
"depends": ["BiocGenerics", "Matrix", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "cli", "dplyr", "fansi", "ggplot2", "lifecycle", "magick", "pillar", "pkgconfig", "plotly", "purrr", "rlang", "shiny", "stringr", "tibble", "tidySingleCellExperiment", "tidygate", "tidyr", "tidyselect", "ttservice", "vctrs"]
},
"tidySummarizedExperiment": {
"name": "tidySummarizedExperiment",
"version": "1.20.0",
"sha256": "02icipy5jzjfk3g17pbc6z5skg7w9hz13ddm4fln8w0fdsxij5xk",
"depends": ["S4Vectors", "SummarizedExperiment", "cli", "dplyr", "ellipsis", "fansi", "ggplot2", "lifecycle", "magrittr", "pillar", "pkgconfig", "plyxp", "purrr", "rlang", "stringr", "tibble", "tidyr", "tidyselect", "ttservice", "vctrs"]
},
"tidybulk": {
"name": "tidybulk",
"version": "2.0.0",
"sha256": "19gzvnmraxssxcxw5jfg4j509ivmpacn1y6mczrk5c753sr6q2p0",
"depends": ["GenomicRanges", "Matrix", "S4Vectors", "SummarizedExperiment", "crayon", "dplyr", "ggplot2", "lifecycle", "magrittr", "purrr", "rlang", "scales", "stringr", "tibble", "tidyr", "tidyselect", "ttservice"]
},
"tidyomics": {
"name": "tidyomics",
"version": "1.6.0",
"sha256": "1bwyhs3sv01qk3197mpv0sq0s0776a5p89lk8579axi9flyvgya2",
"depends": ["cli", "plyranges", "purrr", "rlang", "stringr", "tidySingleCellExperiment", "tidySpatialExperiment", "tidySummarizedExperiment", "tidyseurat"]
},
"tidysbml": {
"name": "tidysbml",
"version": "1.4.0",
"sha256": "1c2yy1i5hfqa22znm7425zikdrsx9rzj07mncz19km9aaammrmm3",
"depends": ["xml2"]
},
"tigre": {
"name": "tigre",
"version": "1.64.0",
"sha256": "1kha8gpy9gwissf8hl9jb39bj5bmkbb1zc063c8vdsw02fwacpdw",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "DBI", "RSQLite", "annotate", "gplots"]
},
"tilingArray": {
"name": "tilingArray",
"version": "1.88.0",
"sha256": "069z6lvv238993dg66d6a6s6ql88410hxx2jccc64k9j090qj2rv",
"depends": ["Biobase", "RColorBrewer", "affy", "genefilter", "pixmap", "strucchange", "vsn"]
},
"timeOmics": {
"name": "timeOmics",
"version": "1.22.0",
"sha256": "0xqsxmn9jg475sbg54dbhqqs63154pqplpn0676fx96i8prv85rf",
"depends": ["checkmate", "dplyr", "ggplot2", "ggrepel", "lmtest", "magrittr", "mixOmics", "plyr", "purrr", "stringr", "tibble", "tidyr"]
},
"timecourse": {
"name": "timecourse",
"version": "1.82.0",
"sha256": "1zy6z2bhqzbkhn4y8fmf5jrn3qyvj4gjfhl1z1yj02xbc9xh6m1q",
"depends": ["Biobase", "MASS", "limma", "marray"]
},
"timescape": {
"name": "timescape",
"version": "1.34.0",
"sha256": "0dlvr08k8dr7fw1igzkigpwwrn9iy8ca1wnvgca082jczlxgh19w",
"depends": ["dplyr", "gtools", "htmlwidgets", "jsonlite", "stringr"]
},
"tkWidgets": {
"name": "tkWidgets",
"version": "1.88.0",
"sha256": "0y2zj1ikcdfk4n9ngh3d5k3jkbnqxx8pgp3mywbff6ijlnh3hvl9",
"depends": ["DynDoc", "widgetTools"]
},
"tomoda": {
"name": "tomoda",
"version": "1.20.0",
"sha256": "148fgacd38kqm7vrlhlh5bjddngzr999zsd2hb9shnpfjlaz8prl",
"depends": ["RColorBrewer", "Rtsne", "SummarizedExperiment", "ggplot2", "ggrepel", "reshape2", "umap"]
},
"tomoseqr": {
"name": "tomoseqr",
"version": "1.14.0",
"sha256": "1bbfbih0zq83051izdl2v9c218bqz6b3r13bn4xkg7g096588g4b",
"depends": ["BiocFileCache", "animation", "dplyr", "ggplot2", "plotly", "purrr", "readr", "shiny", "stringr", "tibble"]
},
"topGO": {
"name": "topGO",
"version": "2.62.0",
"sha256": "1qg9534rnfvysgwg7dbnv1px75xi19din2jlyxivfw9fdz2k3jkb",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "DBI", "GO_db", "SparseM", "graph", "lattice", "matrixStats"]
},
"topconfects": {
"name": "topconfects",
"version": "1.26.0",
"sha256": "1n27xg9s7ml8ys3mhb6m62rlh37f4n3g3v174vl5rjdwv3f21kaf",
"depends": ["assertthat", "ggplot2", "scales"]
},
"topdownr": {
"name": "topdownr",
"version": "1.32.0",
"sha256": "0ari49mb87gqkrlgk0ar31i4k4b989li7nnpkzsn8163m873qwqy",
"depends": ["Biobase", "BiocGenerics", "Biostrings", "MSnbase", "Matrix", "PSMatch", "ProtGenerics", "S4Vectors", "ggplot2", "mzR"]
},
"tpSVG": {
"name": "tpSVG",
"version": "1.6.0",
"sha256": "11fk4mipi0kql70mvys82pqfhzv5w4yphvv4b723i93xj54qgsba",
"depends": ["BiocParallel", "MatrixGenerics", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "mgcv"]
},
"trackViewer": {
"name": "trackViewer",
"version": "1.46.0",
"sha256": "1asyrcdq65135f2s551s543gvwcb651xmcbn9p3z2rrj53v0xxq2",
"depends": ["AnnotationDbi", "BiocGenerics", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "Gviz", "IRanges", "InteractionSet", "Rsamtools", "S4Vectors", "Seqinfo", "grImport", "htmlwidgets", "rhdf5", "rtracklayer", "scales", "strawr", "txdbmaker"]
},
"tracktables": {
"name": "tracktables",
"version": "1.44.0",
"sha256": "0r2wgl0ammh794rgcll22y31l2988bq2gf7605xiq43vf1sgipv9",
"depends": ["GenomicRanges", "IRanges", "RColorBrewer", "Rsamtools", "XML", "XVector", "stringr", "tractor_base"]
},
"tradeSeq": {
"name": "tradeSeq",
"version": "1.24.0",
"sha256": "1lyy5irrq4bqah9v8sff2mgfs5xa6sm62kxkbq0i0clnad9zhvj9",
"depends": ["Biobase", "BiocParallel", "MASS", "Matrix", "RColorBrewer", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "TrajectoryUtils", "edgeR", "ggplot2", "igraph", "magrittr", "matrixStats", "mgcv", "pbapply", "princurve", "slingshot", "tibble", "viridis"]
},
"transcriptR": {
"name": "transcriptR",
"version": "1.37.0",
"sha256": "18gxiwl1i5v10rxdprnpjylx57p2zfgpm5akb2vn7mzj24n4fhh3",
"depends": ["BiocGenerics", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "caret", "chipseq", "e1071", "ggplot2", "pROC", "reshape2", "rtracklayer"]
},
"transcriptogramer": {
"name": "transcriptogramer",
"version": "1.32.0",
"sha256": "03p4h5n589aiin7zzlc8a2ma7sw0l0v61vnh0sd7n1ix9ahx94sb",
"depends": ["RedeR", "biomaRt", "data_table", "doSNOW", "foreach", "ggplot2", "igraph", "limma", "progress", "snow", "tidyr", "topGO"]
},
"transformGamPoi": {
"name": "transformGamPoi",
"version": "1.16.0",
"sha256": "1r34723v0q39w693im6z77rpf4jradklzvxj0dlrzv4y6k9nrzy2",
"depends": ["DelayedArray", "HDF5Array", "Matrix", "MatrixGenerics", "Rcpp", "SummarizedExperiment", "glmGamPoi"]
},
"transite": {
"name": "transite",
"version": "1.28.0",
"sha256": "070rfxna1qdk9vibci4kjjh8mpv9mhm66hnb6bgyncwxsn4v520a",
"depends": ["BiocGenerics", "Biostrings", "GenomicRanges", "Rcpp", "TFMPvalue", "dplyr", "ggplot2", "gridExtra", "scales", "stringr"]
},
"transmogR": {
"name": "transmogR",
"version": "1.6.0",
"sha256": "13pwks45wqia6zlbkn85rngzsnzr86d980hc48caafn59cj1b057",
"depends": ["BSgenome", "Biostrings", "GenomicFeatures", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "SummarizedExperiment", "VariantAnnotation", "data_table", "ggplot2", "jsonlite", "matrixStats", "patchwork", "scales"]
},
"transomics2cytoscape": {
"name": "transomics2cytoscape",
"version": "1.20.0",
"sha256": "1r6yr82s78vmfff5nsxmhc098s8y20ii9a4rfxxy0b3rv15bz0ry",
"depends": ["KEGGREST", "RCy3", "dplyr", "pbapply", "purrr", "tibble"]
},
"traseR": {
"name": "traseR",
"version": "1.40.0",
"sha256": "1rwjfmliqihnbhybjk3svzpk02f80md6d8g8i51z03lnanjgca6f",
"depends": ["BSgenome_Hsapiens_UCSC_hg19", "GenomicRanges", "IRanges"]
},
"treeclimbR": {
"name": "treeclimbR",
"version": "1.6.0",
"sha256": "0kgkyl1kz7my9gxf2sb2h1xpb1hqr6zvs6zrjgprsgwy17p1cj32",
"depends": ["S4Vectors", "SummarizedExperiment", "TreeSummarizedExperiment", "ape", "diffcyt", "dirmult", "dplyr", "edgeR", "ggnewscale", "ggplot2", "ggtree", "rlang", "tibble", "tidyr", "viridis"]
},
"treeio": {
"name": "treeio",
"version": "1.34.0",
"sha256": "1hm8c1znf29cmprlsyfqaks56qqq034kmvnlfvb5x4r5b7drccqp",
"depends": ["ape", "dplyr", "jsonlite", "magrittr", "rlang", "tibble", "tidytree", "yulab_utils"]
},
"treekoR": {
"name": "treekoR",
"version": "1.18.0",
"sha256": "1ljq7a265flysfz7g0225ab46gqpws66nvgpm9pq901g9bjjh3sp",
"depends": ["SingleCellExperiment", "ape", "data_table", "diffcyt", "dplyr", "edgeR", "ggiraph", "ggplot2", "ggtree", "hopach", "lme4", "multcomp", "patchwork", "tidyr"]
},
"tricycle": {
"name": "tricycle",
"version": "1.18.0",
"sha256": "0iafaafqph9a1hjmgdzwjr8fn3cn98mfvy42i68kcbih0c4n25ib",
"depends": ["AnnotationDbi", "GenomicRanges", "IRanges", "RColorBrewer", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "circular", "dplyr", "ggnewscale", "ggplot2", "scater", "scattermore"]
},
"trio": {
"name": "trio",
"version": "3.48.0",
"sha256": "02x86cf6ahs8cdb2gani83059h7ryldy4m1s8gsc7nqsv0ryg1pj",
"depends": ["LogicReg", "data_table", "siggenes", "survival"]
},
"triplex": {
"name": "triplex",
"version": "1.50.0",
"sha256": "0q23akzzx374irjyj9sdvia46x626655rwccjqz2i2bak5azj87a",
"depends": ["Biostrings", "GenomicRanges", "IRanges", "S4Vectors", "XVector"]
},
"tripr": {
"name": "tripr",
"version": "1.16.0",
"sha256": "0n384vfxasbxspwryllzy37kgjgsn92q6x0asr2b4k0hksdn74r8",
"depends": ["DT", "RColorBrewer", "config", "data_table", "dplyr", "golem", "gridExtra", "plot3D", "plotly", "plyr", "shiny", "shinyBS", "shinyFiles", "shinyjs", "stringdist", "stringr", "vegan"]
},
"ttgsea": {
"name": "ttgsea",
"version": "1.18.0",
"sha256": "1pxpfmy7d0m1fq7mq6wl9p5kdnyqiyavfiqarmi66pyrqw375kyi",
"depends": ["DiagrammeR", "data_table", "keras", "purrr", "stopwords", "text2vec", "textstem", "tm", "tokenizers"]
},
"tweeDEseq": {
"name": "tweeDEseq",
"version": "1.56.0",
"sha256": "0vfxidfpl23m32v685ykyck7bfnmwzrncq2h10qcak3w0jfis5pc",
"depends": ["MASS", "Rcpp", "cqn", "edgeR", "limma"]
},
"twilight": {
"name": "twilight",
"version": "1.86.0",
"sha256": "0s01z7q645qs5900vnwkfgpzchwnwdb7yi72a3p2nnbbwhdk0yb3",
"depends": ["Biobase"]
},
"twoddpcr": {
"name": "twoddpcr",
"version": "1.34.0",
"sha256": "18v73fxsy1xlflx89dzsph039j307x356dkizckmrjmmr1v3hzdk",
"depends": ["RColorBrewer", "S4Vectors", "class", "ggplot2", "hexbin", "scales", "shiny"]
},
"txcutr": {
"name": "txcutr",
"version": "1.16.0",
"sha256": "14n4d74xlijf99nsmn6yj8q0nxx9gas8krkzmsmdpma232y2z791",
"depends": ["AnnotationDbi", "BiocGenerics", "BiocParallel", "Biostrings", "GenomicFeatures", "GenomicRanges", "IRanges", "S4Vectors", "rtracklayer", "txdbmaker"]
},
"txdbmaker": {
"name": "txdbmaker",
"version": "1.6.0",
"sha256": "0rczknnbccc2vlbs0mkv89fqmr1myxjba12dvvyqfpnh7pcxfihp",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "BiocIO", "DBI", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "RSQLite", "S4Vectors", "Seqinfo", "UCSC_utils", "biomaRt", "httr", "rjson", "rtracklayer"]
},
"tximeta": {
"name": "tximeta",
"version": "1.28.0",
"sha256": "0rpka083c8gw3crd1sp2vhlbk9rbyvnc6r5gnr55am73rp7dk3px",
"depends": ["AnnotationDbi", "AnnotationHub", "BiocFileCache", "Biostrings", "GenomicFeatures", "GenomicRanges", "IRanges", "Matrix", "S4Vectors", "Seqinfo", "SummarizedExperiment", "ensembldb", "jsonlite", "tibble", "txdbmaker", "tximport"]
},
"tximport": {
"name": "tximport",
"version": "1.38.0",
"sha256": "1f6c8ha6gym85z96azr6939gdvwg4a6p07mlp9d79181vqwr4ps0",
"depends": []
},
"uSORT": {
"name": "uSORT",
"version": "1.36.0",
"sha256": "05hnsslcviqzia3vr3q1a23mk7jdly56gn7agdlrscn99wd4w34y",
"depends": ["Biobase", "BiocGenerics", "Matrix", "RANN", "RSpectra", "VGAM", "cluster", "fpc", "gplots", "igraph", "monocle", "plyr"]
},
"uncoverappLib": {
"name": "uncoverappLib",
"version": "1.20.0",
"sha256": "107rzv1q58mxhks8ggw4krghc2071fjf745zqcrysfmz6nr7byrx",
"depends": ["BiocFileCache", "DT", "EnsDb_Hsapiens_v75", "EnsDb_Hsapiens_v86", "GenomicRanges", "Gviz", "Homo_sapiens", "OrganismDbi", "Rsamtools", "S4Vectors", "TxDb_Hsapiens_UCSC_hg19_knownGene", "TxDb_Hsapiens_UCSC_hg38_knownGene", "condformat", "markdown", "openxlsx", "org_Hs_eg_db", "processx", "rappdirs", "rlist", "shiny", "shinyBS", "shinyWidgets", "shinycssloaders", "shinyjs", "stringr"]
},
"unifiedWMWqPCR": {
"name": "unifiedWMWqPCR",
"version": "1.46.0",
"sha256": "1djpgr4y4vcf96acqqzlwf33mysfmpwj82iyzibsw4xxi17qr1yn",
"depends": ["BiocGenerics", "limma"]
},
"universalmotif": {
"name": "universalmotif",
"version": "1.28.0",
"sha256": "1vx95g37kw4nf297dgrbw7n83d94zzcjpy2bqs2c5wgi3bh3rfa6",
"depends": ["BiocGenerics", "Biostrings", "IRanges", "MASS", "MatrixGenerics", "Rcpp", "RcppThread", "S4Vectors", "ggplot2", "rlang", "yaml"]
},
"updateObject": {
"name": "updateObject",
"version": "1.14.0",
"sha256": "1rwlai7zj7gr43nppf6qnkzjdpyhd3wxnba4r1n0pkgjgpy6qwzv",
"depends": ["BiocGenerics", "S4Vectors", "digest"]
},
"variancePartition": {
"name": "variancePartition",
"version": "1.40.0",
"sha256": "0inwnrk6jppjfmsin7zjlfg250y7q7049x5nis2xqn559pfls37s",
"depends": ["Biobase", "BiocParallel", "MASS", "Matrix", "Rdpack", "RhpcBLASctl", "aod", "corpcor", "fANCOVA", "ggplot2", "gplots", "gtools", "iterators", "limma", "lme4", "lmerTest", "matrixStats", "pbkrtest", "remaCor", "reshape2", "rlang", "scales"]
},
"vbmp": {
"name": "vbmp",
"version": "1.78.0",
"sha256": "0cnswf82mzb5i36p2asv73rxxjbmdzp0silqfpl3xvh7j8dwqmsw",
"depends": []
},
"velociraptor": {
"name": "velociraptor",
"version": "1.20.0",
"sha256": "11752daakbh8gzhg4sg7bcph5m9gl3a7x5vsg21hiplayh5vsw25",
"depends": ["BiocGenerics", "BiocParallel", "BiocSingular", "DelayedArray", "Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "basilisk", "reticulate", "scuttle", "zellkonverter"]
},
"veloviz": {
"name": "veloviz",
"version": "1.16.0",
"sha256": "0gkvbcm1aj697fvb5yyw3hd7ysy7dbhz24xjqfnl8n0z3w3b8dvm",
"depends": ["Matrix", "RSpectra", "Rcpp", "igraph", "mgcv"]
},
"vidger": {
"name": "vidger",
"version": "1.30.0",
"sha256": "0nhbc0n82xk4qdkmv3d6fsaf7rmwq2hshi68yba6z75vjshkpfpa",
"depends": ["Biobase", "DESeq2", "GGally", "RColorBrewer", "SummarizedExperiment", "edgeR", "ggplot2", "ggrepel", "knitr", "rmarkdown", "scales", "tidyr"]
},
"viper": {
"name": "viper",
"version": "1.44.0",
"sha256": "1glm6xmbsppi0yhriyn44h32whjy004szn5bq5qmj4jdprqbj4yj",
"depends": ["Biobase", "KernSmooth", "e1071", "mixtools"]
},
"visiumStitched": {
"name": "visiumStitched",
"version": "1.2.0",
"sha256": "1w41968mlfkc5gmdw3h3jzmirvlnbsarkqirj0j2l4f1fgx2lgs7",
"depends": ["BiocBaseUtils", "BiocGenerics", "DropletUtils", "Matrix", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "clue", "dplyr", "imager", "pkgcond", "readr", "rjson", "spatialLIBD", "stringr", "tibble", "tidyr", "xml2"]
},
"vissE": {
"name": "vissE",
"version": "1.18.0",
"sha256": "1k7x0ihb34226xvq39v3hvknwybrwa0makdkq28zazfqlm1rk09g",
"depends": ["GSEABase", "RColorBrewer", "ggforce", "ggplot2", "ggraph", "ggrepel", "ggwordcloud", "igraph", "msigdb", "plyr", "reshape2", "scales", "scico", "textstem", "tidygraph", "tm"]
},
"vmrseq": {
"name": "vmrseq",
"version": "1.2.0",
"sha256": "138x3i1agw0j4m6i5jpvmfdk3kh9shy4pwzm93h4y8468hpfanm4",
"depends": ["BiocParallel", "DelayedArray", "GenomicRanges", "HDF5Array", "IRanges", "S4Vectors", "SummarizedExperiment", "bumphunter", "data_table", "devtools", "dplyr", "gamlss_dist", "ggplot2", "locfit", "recommenderlab", "tidyr"]
},
"vsclust": {
"name": "vsclust",
"version": "1.12.0",
"sha256": "0gnk0bd3nqzla5fbxpx3zd1612qzq84zpw7hsk2l0f3xgwl1zfr6",
"depends": ["DOSE", "MultiAssayExperiment", "Rcpp", "clusterProfiler", "httr", "limma", "matrixStats", "qvalue", "shiny"]
},
"vsn": {
"name": "vsn",
"version": "3.78.0",
"sha256": "07skbp8pq3anmlsmw0zqc2lhsis6wg9a6vid2535iy5hpj3d0yv0",
"depends": ["Biobase", "affy", "ggplot2", "lattice", "limma"]
},
"vtpnet": {
"name": "vtpnet",
"version": "0.50.0",
"sha256": "0zv8ci26f849k0rhh5c5hkgckymsp18hvqrh922sdf25c1khc8l7",
"depends": ["GenomicRanges", "doParallel", "foreach", "graph", "gwascat"]
},
"vulcan": {
"name": "vulcan",
"version": "1.32.0",
"sha256": "1m52ai4z96b7kddg1c1cnm33h0w0hyg6r9ny5z8y1zipk6qja8cv",
"depends": ["Biobase", "ChIPpeakAnno", "DESeq2", "DiffBind", "GenomicRanges", "S4Vectors", "TxDb_Hsapiens_UCSC_hg19_knownGene", "caTools", "csaw", "gplots", "locfit", "viper", "wordcloud", "zoo"]
},
"waddR": {
"name": "waddR",
"version": "1.24.0",
"sha256": "1x4kznzym44lsgn4hjfhqdqi04h8613qj7msvi3rwgnqi7qx0wg8",
"depends": ["BiocFileCache", "BiocParallel", "Rcpp", "RcppArmadillo", "SingleCellExperiment", "arm", "eva"]
},
"wateRmelon": {
"name": "wateRmelon",
"version": "2.16.0",
"sha256": "1rp0jyg8g36lixy5zx1p3vxbqz95gq2cm0ky6zzc406ac0nwskpv",
"depends": ["Biobase", "IlluminaHumanMethylation450kanno_ilmn12_hg19", "ROC", "illuminaio", "limma", "lumi", "matrixStats", "methylumi"]
},
"wavClusteR": {
"name": "wavClusteR",
"version": "2.44.0",
"sha256": "1pid5gbq2jadrlkdk5s7pw90id4bdwnmi2pxi9h171mx591cmm23",
"depends": ["BiocGenerics", "Biostrings", "GenomicFeatures", "GenomicRanges", "Hmisc", "IRanges", "Rsamtools", "S4Vectors", "foreach", "ggplot2", "mclust", "rtracklayer", "seqinr", "stringr"]
},
"weaver": {
"name": "weaver",
"version": "1.76.0",
"sha256": "0id7z8dxbdcsdmxc3hf91amy4y3s3iqyjsbr4vv01qdfb8y8dhsb",
"depends": ["codetools", "digest"]
},
"webbioc": {
"name": "webbioc",
"version": "1.82.0",
"sha256": "0s3i6y01vvni3jlivsw708ylj3g2byx8agf72x48wwhlmp0v9gck",
"depends": ["Biobase", "BiocManager", "affy", "annaffy", "gcrma", "multtest", "qvalue", "vsn"]
},
"weitrix": {
"name": "weitrix",
"version": "1.22.0",
"sha256": "00q7f6b1ib1kjnrmr3ps8cx2h5fc751zbl1kc7gh2wzg7gry9g5h",
"depends": ["BiocGenerics", "BiocParallel", "Ckmeans_1d_dp", "DelayedArray", "DelayedMatrixStats", "RhpcBLASctl", "S4Vectors", "SummarizedExperiment", "assertthat", "dplyr", "ggplot2", "glm2", "limma", "purrr", "reshape2", "rlang", "scales", "topconfects"]
},
"widgetTools": {
"name": "widgetTools",
"version": "1.88.0",
"sha256": "0p6mqkjzwrnrbjjhbsg5bhbwm4wb2bmiqgbq6npmlrmcxz9xgvnw",
"depends": []
},
"wiggleplotr": {
"name": "wiggleplotr",
"version": "1.34.0",
"sha256": "0w4y9z4irzs03z6vmniwyz605048vxqdsb7q0yl9p45h13pm885h",
"depends": ["GenomeInfoDb", "GenomicRanges", "IRanges", "S4Vectors", "assertthat", "cowplot", "dplyr", "ggplot2", "purrr", "rtracklayer"]
},
"wpm": {
"name": "wpm",
"version": "1.20.0",
"sha256": "04z1kgay2ix9hn434v9k9nja7jlvrz9ysrlajmzb1ipp51vw02q6",
"depends": ["Biobase", "DT", "RColorBrewer", "SummarizedExperiment", "cli", "config", "dplyr", "ggplot2", "golem", "logging", "rlang", "shiny", "shinyWidgets", "shinycustomloader", "shinydashboard", "stringr"]
},
"xCell2": {
"name": "xCell2",
"version": "1.2.0",
"sha256": "1h7d93jh4iqs6bj8s9dc6apcm1178yl5yxngvi55wpj1h5hi438z",
"depends": ["AnnotationHub", "BiocParallel", "Matrix", "Rfast", "SingleCellExperiment", "SummarizedExperiment", "dplyr", "magrittr", "minpack_lm", "ontologyIndex", "pracma", "progress", "quadprog", "readr", "singscore", "tibble"]
},
"xcms": {
"name": "xcms",
"version": "4.8.0",
"sha256": "1d2p1hxa36423209cajl6b62rn7d1j0hf8s32p88yfxfv2rbswb8",
"depends": ["Biobase", "BiocGenerics", "BiocParallel", "IRanges", "MSnbase", "MassSpecWavelet", "MetaboCoreUtils", "MsCoreUtils", "MsExperiment", "MsFeatures", "ProtGenerics", "RColorBrewer", "S4Vectors", "Spectra", "SummarizedExperiment", "data_table", "lattice", "mzR", "progress"]
},
"xcore": {
"name": "xcore",
"version": "1.14.0",
"sha256": "0ks6ki009604pnmb49yiyi7lqdx8wgmpxr4jqs60ik28pb5sgwv6",
"depends": ["DelayedArray", "GenomicRanges", "IRanges", "Matrix", "MultiAssayExperiment", "S4Vectors", "edgeR", "foreach", "glmnet", "iterators", "magrittr"]
},
"xenLite": {
"name": "xenLite",
"version": "1.4.0",
"sha256": "0fhl2lz68crvpb104r25pdwcvg567qxhsqkm941qxxv8inr08nmi",
"depends": ["BiocFileCache", "EBImage", "HDF5Array", "Matrix", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "TENxIO", "arrow", "dplyr", "ggplot2", "shiny"]
},
"xmapbridge": {
"name": "xmapbridge",
"version": "1.68.0",
"sha256": "19f6wc6z42c978rd0pgg5kfs4b1bnnb0ywyc517wby6mqmhlgwai",
"depends": []
},
"yamss": {
"name": "yamss",
"version": "1.36.0",
"sha256": "0dixb373yx3jrmy9mm4z5mgqi37f271kv0fsj6a0mqd51429kacw",
"depends": ["BiocGenerics", "EBImage", "IRanges", "Matrix", "S4Vectors", "SummarizedExperiment", "data_table", "limma", "mzR"]
},
"yarn": {
"name": "yarn",
"version": "1.36.0",
"sha256": "1cv5mmzfqbgyzly9dbr3rxqgg5zk3vap0g3rjvh1f72rslv5fyj0",
"depends": ["Biobase", "RColorBrewer", "biomaRt", "downloader", "edgeR", "gplots", "limma", "matrixStats", "preprocessCore", "quantro", "readr"]
},
"zFPKM": {
"name": "zFPKM",
"version": "1.32.0",
"sha256": "1lrj0pj966mq0vcj76qy9f82kfvv9spjgd90ipbfdnrvswcka53c",
"depends": ["SummarizedExperiment", "checkmate", "dplyr", "ggplot2", "tidyr"]
},
"zellkonverter": {
"name": "zellkonverter",
"version": "1.20.0",
"sha256": "1w9kkx5qxskkxmq5y0x58pim5n9i4hms5mhm6y2n58qd1ja2qap2",
"depends": ["DelayedArray", "Matrix", "S4Vectors", "SingleCellExperiment", "SparseArray", "SummarizedExperiment", "basilisk", "cli", "reticulate"]
},
"zenith": {
"name": "zenith",
"version": "1.12.0",
"sha256": "02dm4gi996qb3v09915zg0b4ibakjv5gmv2p39i1x185y2rbjmr9",
"depends": ["EnrichmentBrowser", "GSEABase", "Rdpack", "Rfast", "dplyr", "ggplot2", "limma", "msigdbr", "progress", "reshape2", "tidyr", "variancePartition"]
},
"zinbwave": {
"name": "zinbwave",
"version": "1.32.0",
"sha256": "022pngsmgbkjgr7yp08pqhc83qbv42hdvjj47s4dfzhd6zyz301s",
"depends": ["BiocParallel", "Matrix", "SingleCellExperiment", "SummarizedExperiment", "edgeR", "genefilter", "softImpute"]
},
"zitools": {
"name": "zitools",
"version": "1.4.0",
"sha256": "01mgf9m4080ws92zbdgxg28qlh9ly83nqa78x20kwhci3x95xy88",
"depends": ["BiocGenerics", "DESeq2", "MatrixGenerics", "RColorBrewer", "SummarizedExperiment", "VGAM", "dplyr", "ggplot2", "magrittr", "matrixStats", "phyloseq", "pscl", "reshape2", "tibble", "tidyr"]
},
"ABAEnrichment": {
"name": "ABAEnrichment",
"version": "1.2.2",
"sha256": "0hmxxp12w67lp1g1djzlxffwlx32mnd1wbmz1hmv7y7z6h6ichvq",
"depends": ["ABAData", "Rcpp", "gplots"],
"broken": true
},
"ALPS": {
"name": "ALPS",
"version": "1.5.0",
"sha256": "1aydvzc6x0871iasij68xqdlhjyg69qbqxm0qh1q52w8gj2nyq3p",
"depends": ["assertthat", "BiocParallel", "ChIPseeker", "corrplot", "data_table", "dplyr", "genefilter", "GenomicRanges", "GGally", "gghalves", "ggplot2", "ggseqlogo", "Gviz", "magrittr", "org_Hs_eg_db", "plyr", "reshape2", "rtracklayer", "stringr", "tibble", "tidyr", "TxDb_Hsapiens_UCSC_hg19_knownGene", "TxDb_Hsapiens_UCSC_hg38_knownGene"],
"broken": true
},
"APAlyzer": {
"name": "APAlyzer",
"version": "1.22.0",
"sha256": "00a3barcm8yr4q7c9irpmg5v6v8ybzb2ww9mb1r7fdkg0kpj6dj9",
"depends": ["DESeq2", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "HybridMTest", "Rsamtools", "Rsubread", "SummarizedExperiment", "VariantAnnotation", "dplyr", "ggplot2", "ggrepel", "repmis", "rtracklayer", "tidyr"],
"broken": true
},
"ASpediaFI": {
"name": "ASpediaFI",
"version": "1.11.0",
"sha256": "13jny6ca8hdf269z37baaggfs7jss00ln09apn42pj411g3p7nms",
"depends": ["BiocParallel", "biomaRt", "dplyr", "DRaWR", "e1071", "fgsea", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "ggplot2", "Gviz", "igraph", "IRanges", "IVAS", "limma", "Matrix", "reshape2", "ROCR", "Rsamtools", "rtracklayer", "S4Vectors", "scales", "SummarizedExperiment"],
"broken": true
},
"ATACCoGAPS": {
"name": "ATACCoGAPS",
"version": "1.6.0",
"sha256": "09h32q9y7z65ck33rwqzw2wkl8l6016s0sdkhf2g094yxhkz26rh",
"depends": ["BSgenome_Hsapiens_UCSC_hg19", "BSgenome_Mmusculus_UCSC_mm10", "CoGAPS", "GeneOverlap", "GenomicFeatures", "GenomicRanges", "Homo_sapiens", "IRanges", "JASPAR2016", "Mus_musculus", "TFBSTools", "chromVAR", "dplyr", "fgsea", "gplots", "gtools", "motifmatchr", "msigdbr", "projectR", "rGREAT", "stringr", "tidyverse"],
"broken": true
},
"AffyCompatible": {
"name": "AffyCompatible",
"version": "1.30.0",
"sha256": "1qw741j4d9b7bczjz3s72a9d0dcxbh5a2raak3ggwmz72p53axfz",
"depends": ["Biostrings", "RCurl", "XML"],
"broken": true
},
"AffyExpress": {
"name": "AffyExpress",
"version": "1.36.0",
"sha256": "186gc8c3bj070zvwyy4vz44wx1r85bbmil78b6m9kvwp6q1856d7",
"depends": ["affy", "limma"],
"broken": true
},
"AffyTiling": {
"name": "AffyTiling",
"version": "1.28.0",
"sha256": "08n1w64yk1pxb9d8dpa86y3mqxrsvyq0gsfzlsqg6fz8jz497fhr",
"depends": ["affxparser", "affy", "preprocessCore"],
"broken": true
},
"AnalysisPageServer": {
"name": "AnalysisPageServer",
"version": "1.4.1",
"sha256": "0zq0h9abswvhkpgb6f966rhgj7lh02aykq88fphxfv9zzkjfxbjp",
"depends": ["Biobase", "graph", "log4r", "rjson"],
"broken": true
},
"AneuFinder": {
"name": "AneuFinder",
"version": "1.35.0",
"sha256": "0zx0brvcyi9id7xli9h5nk9an7j46p7zgjj3qmwr3jm4b95qahpl",
"depends": ["AneuFinderData", "BiocGenerics", "Biostrings", "DNAcopy", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "bamsignals", "cowplot", "doParallel", "ecp", "foreach", "ggdendro", "ggplot2", "ggrepel", "mclust", "reshape2"],
"broken": true
},
"AnnotationFuncs": {
"name": "AnnotationFuncs",
"version": "1.20.0",
"sha256": "03rznpbsgq3pdh0id35vp8984f57ws2jpb0cww1qxglf967gy028",
"depends": ["AnnotationDbi"],
"broken": true
},
"ArrayExpressHTS": {
"name": "ArrayExpressHTS",
"version": "1.20.0",
"sha256": "00a5h3nwwhi9phrys2gj0ba8a24iqxk09licb0jn1qzdz9mrfxmq",
"depends": ["Biobase", "BiocGenerics", "Biostrings", "DESeq", "GenomicRanges", "Hmisc", "IRanges", "R2HTML", "RColorBrewer", "Rsamtools", "ShortRead", "XML", "biomaRt", "bitops", "edgeR", "rJava", "sampling", "sendmailR", "snow", "svMisc"],
"broken": true
},
"ArrayTV": {
"name": "ArrayTV",
"version": "1.8.0",
"sha256": "0ny5x2w0n3di5wzywfngsfdxaciczs24cnbvk75mv6hf4bdwfp74",
"depends": ["DNAcopy", "foreach", "oligoClasses"],
"broken": true
},
"ArrayTools": {
"name": "ArrayTools",
"version": "1.30.0",
"sha256": "168llqk8w1b54xy0ijg0m8mzcwggawkdr4s7abi2fv4q5007s1jv",
"depends": ["Biobase", "affy", "limma", "xtable"],
"broken": true
},
"AtlasRDF": {
"name": "AtlasRDF",
"version": "1.6.0",
"sha256": "16hgw47px7ig6hrm90y5nzy3dgdfm5my58bli20aj6dhnh2yvhxd",
"depends": ["hash"],
"broken": true
},
"Autotuner": {
"name": "Autotuner",
"version": "1.7.0",
"sha256": "0k07gs6bnxs0894iqi1lhk96mifjcdf68bv4q9fjv50nzqpzqd8l",
"depends": ["assertthat", "Biobase", "cluster", "entropy", "MSnbase", "mzR", "RColorBrewer", "scales"],
"broken": true
},
"BAC": {
"name": "BAC",
"version": "1.30.0",
"sha256": "1yrw01m8fd54v352pcb7904f8wi3il83nx8ywf6m968x33y2npxn",
"depends": [],
"broken": true
},
"BDMMAcorrect": {
"name": "BDMMAcorrect",
"version": "1.18.1",
"sha256": "17lsgl5mczfk2flkrclxhsqkkpr6mncccywm68l0z02pi5xhd8j7",
"depends": ["ape", "ellipse", "ggplot2", "Rcpp", "RcppArmadillo", "RcppEigen", "SummarizedExperiment", "vegan"],
"broken": true
},
"BEARscc": {
"name": "BEARscc",
"version": "1.24.0",
"sha256": "0f66pbhf4fz66021k7f6rlwzxdikznbhjqqpxwrj07yg65q5sd1l",
"depends": ["SingleCellExperiment", "data_table", "ggplot2"],
"broken": true
},
"BGmix": {
"name": "BGmix",
"version": "1.30.0",
"sha256": "1ii0cvqpz7ai779r4hx8yimsx69ln1f7qlw7jvp3k606z52kqkp2",
"depends": ["KernSmooth"],
"broken": true
},
"BHC": {
"name": "BHC",
"version": "1.22.0",
"sha256": "0m8w4b3ihnmvccy32nwvgzwn7k9i018ydw8iz19b6kz5r5c89q17",
"depends": [],
"broken": true
},
"BPRMeth": {
"name": "BPRMeth",
"version": "1.34.0",
"sha256": "0p06wjxmhfq3nyz1cwj0ghl3rnwd9lkhgzrndzgxb2a9l6v74w2h",
"depends": ["BiocStyle", "GenomicRanges", "IRanges", "MASS", "Rcpp", "RcppArmadillo", "S4Vectors", "assertthat", "cowplot", "data_table", "doParallel", "e1071", "earth", "foreach", "ggplot2", "kernlab", "magrittr", "matrixcalc", "mvtnorm", "randomForest", "truncnorm"],
"broken": true
},
"BRGenomics": {
"name": "BRGenomics",
"version": "1.14.1",
"sha256": "09kpb9jn84np1z8k72ngsbd0xx6v0x3kcl738wizr64w0j9zhlla",
"depends": ["DESeq2", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "rtracklayer", "S4Vectors", "SummarizedExperiment"],
"broken": true
},
"BayesPeak": {
"name": "BayesPeak",
"version": "1.22.0",
"sha256": "1jmn8p461rmgjarf4rlhyqzrjg8xkpq56rlrk6964kqxp6jkh8bi",
"depends": ["IRanges"],
"broken": true
},
"BiGGR": {
"name": "BiGGR",
"version": "1.44.0",
"sha256": "1awdwwg54cfnsn8kp0lw6a7c3mgix024ry7mxn9vb5xq4hp1gflb",
"depends": ["hyperdraw", "hypergraph", "limSolve", "rsbml", "stringr"],
"broken": true
},
"BioMM": {
"name": "BioMM",
"version": "1.15.0",
"sha256": "01lfw0npcclcyqqh2xkhjq9jw0irbk13fsj5y1b3rz1amzzngg6p",
"depends": ["BiocParallel", "CMplot", "e1071", "ggplot2", "glmnet", "imager", "lattice", "nsprcomp", "precrec", "ranger", "rms", "topGO", "vioplot", "xlsx"],
"broken": true
},
"BioNetStat": {
"name": "BioNetStat",
"version": "1.22.0",
"sha256": "1rbb36v64b9xbk2dsf6wsyrhwwbkysrj8fp1g22y3gisdk170sg8",
"depends": ["BiocParallel", "DT", "ggplot2", "Hmisc", "igraph", "knitr", "markdown", "pathview", "pheatmap", "plyr", "psych", "RColorBrewer", "RJSONIO", "rmarkdown", "shiny", "shinyBS", "whisker", "yaml"],
"broken": true
},
"BioPlex": {
"name": "BioPlex",
"version": "1.2.3",
"sha256": "0cn0x6ij2a3xy61bq0qy5amp0ipj4r4shh7g0vlwbkrclj9w347r",
"depends": ["BiocFileCache", "GenomeInfoDb", "GenomicRanges", "GEOquery", "graph", "SummarizedExperiment"],
"broken": true
},
"BioSeqClass": {
"name": "BioSeqClass",
"version": "1.28.0",
"sha256": "0pv63d57hck04dpha20pzyzz7przzvi536nmgnsig5zw16lis4f2",
"depends": ["Biobase", "Biostrings", "class", "e1071", "foreign", "ipred", "klaR", "nnet", "party", "randomForest", "rpart", "scatterplot3d", "tree"],
"broken": true
},
"BiocCaseStudies": {
"name": "BiocCaseStudies",
"version": "1.32.0",
"sha256": "0wn3a01l6d62prrncmy22dx4nqsgzq3lw24ybf676ghrmjaygmyc",
"depends": ["Biobase"],
"broken": true
},
"BiocDockerManager": {
"name": "BiocDockerManager",
"version": "1.11.0",
"sha256": "0w393f14i253pnk0jzf2ci4g5cnxshwdjmix2r8arlnadh7spjyk",
"depends": ["dplyr", "httr", "memoise", "readr", "whisker"],
"broken": true
},
"BiocInstaller": {
"name": "BiocInstaller",
"version": "1.20.3",
"sha256": "0hjfhzbpxr7sfxac46ihklq0l7gkglrp7qi48vcp1s7xapnikblr",
"depends": [],
"broken": true
},
"BiocOncoTK": {
"name": "BiocOncoTK",
"version": "1.24.0",
"sha256": "0h4cr7lrmbyx7kdj81s7ff75svr01rvzn54svqi93vjilawmpbm3",
"depends": ["ComplexHeatmap", "DBI", "DT", "GenomicFeatures", "GenomicRanges", "IRanges", "MASS", "Rgraphviz", "S4Vectors", "SummarizedExperiment", "bigrquery", "car", "curatedTCGAData", "dplyr", "ggplot2", "ggpubr", "graph", "httr", "magrittr", "plyr", "rjson", "scales", "shiny"],
"broken": true
},
"BitSeq": {
"name": "BitSeq",
"version": "1.14.0",
"sha256": "1q58za8jd96bk2wxy7np0b7lar3v0pk6ll833k10x1b260rvpgbp",
"depends": ["IRanges", "Rsamtools", "S4Vectors", "zlibbioc"],
"broken": true
},
"BrainSABER": {
"name": "BrainSABER",
"version": "1.8.0",
"sha256": "1nxcjvaip7pp387bhdc2pmjai3chib1n63ig0cslhppzzjp2y6jd",
"depends": ["BiocFileCache", "biomaRt", "data_table", "lsa", "S4Vectors", "shiny", "SummarizedExperiment"],
"broken": true
},
"BrainStars": {
"name": "BrainStars",
"version": "1.14.0",
"sha256": "0r6jd6h48c15sg655079lwr9v1gl79wk8773w2q9fyfmakhj15vx",
"depends": ["Biobase", "RCurl", "RJSONIO"],
"broken": true
},
"BrowserVizDemo": {
"name": "BrowserVizDemo",
"version": "1.2.3",
"sha256": "1pj9b0nhkrc3bcs36dpm2hy9lsfp2xwnrlf99b9v6n96ijki8bg9",
"depends": ["BiocGenerics", "BrowserViz", "httpuv", "jsonlite"],
"broken": true
},
"BubbleTree": {
"name": "BubbleTree",
"version": "2.38.0",
"sha256": "1h3wyp9f554zlf4ah6dqgb1c26bkx1ks2q709hz3krchgzv3pinn",
"depends": ["Biobase", "BiocGenerics", "BiocStyle", "GenomicRanges", "IRanges", "RColorBrewer", "WriteXLS", "biovizBase", "dplyr", "e1071", "ggplot2", "gridExtra", "gtable", "gtools", "limma", "magrittr", "plyr"],
"broken": true
},
"CALIB": {
"name": "CALIB",
"version": "1.36.0",
"sha256": "1b21f0zg4czhk4pbd3c3vbl0p4qpw0l4wg17lm1gw4b6d6ml7jsb",
"depends": ["limma"],
"broken": true
},
"CAnD": {
"name": "CAnD",
"version": "1.2.1",
"sha256": "0ncpa81ac6dzkhqnr56i4nzzipsmzy44n71z6sdhpa39rgdar2a7",
"depends": ["ggplot2", "reshape"],
"broken": true
},
"CBEA": {
"name": "CBEA",
"version": "1.6.0",
"sha256": "1mbd62wakjn9pwhy2q2hfxkx09ny577a4j6lssnjj65jb3s7gjr6",
"depends": ["BiocParallel", "BiocSet", "Rcpp", "SummarizedExperiment", "TreeSummarizedExperiment", "dplyr", "fitdistrplus", "generics", "glue", "goftest", "lmom", "magrittr", "mixtools", "rlang", "tibble", "tidyr"],
"broken": true
},
"CINdex": {
"name": "CINdex",
"version": "1.36.0",
"sha256": "1cdmmnyxsrzlnsp15i8b072dfdsglql89ss1ddcwh4jyg8svwakl",
"depends": ["GenomeInfoDb", "GenomicRanges", "IRanges", "S4Vectors", "bitops", "dplyr", "gplots", "gridExtra", "png", "som", "stringr"],
"broken": true
},
"CNPBayes": {
"name": "CNPBayes",
"version": "1.0.0",
"sha256": "06jw9xi0q5slh1xghgj1js5bn1gsmpag0w84cxa7qf5ls1bw4xp6",
"depends": ["BiocGenerics", "GenomeInfoDb", "GenomicRanges", "IRanges", "RColorBrewer", "Rcpp", "S4Vectors", "combinat", "foreach", "gtools", "matrixStats", "oligoClasses"],
"broken": true
},
"CNVgears": {
"name": "CNVgears",
"version": "1.8.0",
"sha256": "1p7dxzkna3czkpsidj586hfwhymrjwvjr6q5f2pq7zlmpn6f8svx",
"depends": ["data_table", "ggplot2"],
"broken": true
},
"CNVtools": {
"name": "CNVtools",
"version": "1.64.0",
"sha256": "1sm28sl7ghcfrgjd0d741zfy21r6vxkhj8cn510z95aa49icpd8j",
"depends": ["survival"],
"broken": true
},
"COHCAP": {
"name": "COHCAP",
"version": "1.8.0",
"sha256": "1lak57k8b8jcd21wajr1ivi1sml73fsvb6jbdz6nxgjbq7al1hgk",
"depends": ["COHCAPanno", "WriteXLS"],
"broken": true
},
"CORREP": {
"name": "CORREP",
"version": "1.36.0",
"sha256": "0hjkwl2mf173mfdrziiadf5hacz6j67skizch44rxc2kfj7sbhyb",
"depends": ["e1071"],
"broken": true
},
"CRISPRball": {
"name": "CRISPRball",
"version": "1.4.0",
"sha256": "0y1hqb6jb356qff3jclab47jkf8i65qdva3idixi20y9m009q5s8",
"depends": ["ComplexHeatmap", "DT", "InteractiveComplexHeatmap", "PCAtools", "circlize", "colourpicker", "dittoSeq", "ggplot2", "htmlwidgets", "matrixStats", "plotly", "shiny", "shinyBS", "shinyWidgets", "shinycssloaders", "shinyjqui", "shinyjs"],
"broken": true
},
"CSSP": {
"name": "CSSP",
"version": "1.8.0",
"sha256": "05x0agbcpns8s3vmbs7ygdny249vcahzk7sqv50nz39ap2c7i309",
"depends": [],
"broken": true
},
"CancerInSilico": {
"name": "CancerInSilico",
"version": "2.18.0",
"sha256": "0szbz88wnr3dbf7k9bhihv6hkr29gsp9vrllr201wx5qfzl2gncy",
"depends": ["BH", "Rcpp"],
"broken": true
},
"CancerMutationAnalysis": {
"name": "CancerMutationAnalysis",
"version": "1.13.0",
"sha256": "0c3yjscd1jlgfl869vnv37qdb0y5gicnja1why9ws95qqgmij6zl",
"depends": ["AnnotationDbi", "limma", "qvalue"],
"broken": true
},
"CancerSubtypes": {
"name": "CancerSubtypes",
"version": "1.26.0",
"sha256": "06lw7b43fwh554870w71i676q6gm6kx53580cgg17a7prdjndkmr",
"depends": ["cluster", "ConsensusClusterPlus", "impute", "limma", "NMF", "sigclust", "survival"],
"broken": true
},
"CellScore": {
"name": "CellScore",
"version": "1.27.0",
"sha256": "11lhb46d5w3fq8qhlmap7wfirkpdnr6bqdpdarwxirrp076znvi2",
"depends": ["Biobase", "RColorBrewer", "SummarizedExperiment", "gplots", "lsa", "squash"],
"broken": true
},
"CellaRepertorium": {
"name": "CellaRepertorium",
"version": "1.12.0",
"sha256": "0k9sxh0b9g2841zpkbmcc65v0kfyv1i6sxzdmbr49nzzm27xlbh2",
"depends": ["BiocGenerics", "Biostrings", "dplyr", "forcats", "generics", "glue", "Matrix", "progress", "purrr", "Rcpp", "reshape2", "rlang", "S4Vectors", "stringr", "tibble", "tidyr"],
"broken": true
},
"ChIC": {
"name": "ChIC",
"version": "1.19.0",
"sha256": "0zbmhixxn3skn8csz93fyyfamz1n3gzjzb2caw8ybi2cysgzz5ys",
"depends": ["BiocGenerics", "caret", "caTools", "ChIC_data", "genomeIntervals", "GenomicRanges", "IRanges", "progress", "randomForest", "Rsamtools", "S4Vectors"],
"broken": true
},
"ChIPQC": {
"name": "ChIPQC",
"version": "1.44.0",
"sha256": "1zmxyh9a26niix1rch1xl8imc4fwzjbdbbfbcq14hqhdjha0g95p",
"depends": ["Biobase", "BiocGenerics", "BiocParallel", "DiffBind", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "TxDb_Celegans_UCSC_ce6_ensGene", "TxDb_Dmelanogaster_UCSC_dm3_ensGene", "TxDb_Hsapiens_UCSC_hg18_knownGene", "TxDb_Hsapiens_UCSC_hg19_knownGene", "TxDb_Mmusculus_UCSC_mm10_knownGene", "TxDb_Mmusculus_UCSC_mm9_knownGene", "TxDb_Rnorvegicus_UCSC_rn4_ensGene", "chipseq", "ggplot2", "gtools", "reshape2"],
"broken": true
},
"Clonality": {
"name": "Clonality",
"version": "1.18.0",
"sha256": "0rx3k8c55q831dhfh5dpkl3px8jj6glx6i3la80r9krx68mbp947",
"depends": ["DNAcopy"],
"broken": true
},
"CoRegNet": {
"name": "CoRegNet",
"version": "1.6.0",
"sha256": "0ynizawrygpka2isldbfmnlz1zqczx2fv1kbvz1lbm9qwbpj7rn4",
"depends": ["arules", "igraph", "shiny"],
"broken": true
},
"CoSIA": {
"name": "CoSIA",
"version": "1.8.0",
"sha256": "1xkh2nms6pynpaaw1ckkp2d5vgi93m27jxac9js02cxixg1qmc3l",
"depends": ["AnnotationDbi", "ExperimentHub", "RColorBrewer", "annotationTools", "biomaRt", "dplyr", "ggplot2", "homologene", "magrittr", "org_Ce_eg_db", "org_Dm_eg_db", "org_Dr_eg_db", "org_Hs_eg_db", "org_Mm_eg_db", "org_Rn_eg_db", "plotly", "readr", "stringr", "tibble", "tidyr", "tidyselect"],
"broken": true
},
"CompGO": {
"name": "CompGO",
"version": "1.6.0",
"sha256": "0n84z3mhg6zb3yafz0803g6cggzpbw31fn933q9bg7pybij0nf1p",
"depends": ["GenomicFeatures", "RDAVIDWebService", "Rgraphviz", "TxDb_Mmusculus_UCSC_mm9_knownGene", "ggplot2", "pathview", "pcaMethods", "reshape2", "rtracklayer"],
"broken": true
},
"CopyNumber450k": {
"name": "CopyNumber450k",
"version": "1.6.0",
"sha256": "0z4v6x140gzaxf06a73d2qd6dp8gvq62l8xb7bii21r7n089m14i",
"depends": ["Biobase", "BiocGenerics", "DNAcopy", "minfi", "preprocessCore"],
"broken": true
},
"CopywriteR": {
"name": "CopywriteR",
"version": "2.2.0",
"sha256": "0hmww433hyg4wgi2hx49mwrd4y65myyi00akys3mhdsxn3s0al13",
"depends": ["BiocParallel", "CopyhelpeR", "DNAcopy", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "chipseq", "data_table", "futile_logger", "gtools", "matrixStats"],
"broken": true
},
"CorMut": {
"name": "CorMut",
"version": "1.12.0",
"sha256": "0ldqw4g15i4r1nv74msn97c75wcr1nvwk1ffnkafvnc8bwcfzfmy",
"depends": ["igraph", "seqinr"],
"broken": true
},
"CountClust": {
"name": "CountClust",
"version": "1.21.0",
"sha256": "17px9jkpjwz0j2f5h8xv52wh24ilqvlb6dvczjc36lb7mq4cw3sq",
"depends": ["cowplot", "flexmix", "ggplot2", "gtools", "limma", "maptpx", "picante", "plyr", "reshape2", "slam", "SQUAREM"],
"broken": true
},
"CytoTree": {
"name": "CytoTree",
"version": "1.6.0",
"sha256": "1dsdhwjkd3ngnw50fs6vz048afk47r95vhi0wqj8sip11nhndkd8",
"depends": ["Biobase", "BiocNeighbors", "cluster", "destiny", "flowCore", "FlowSOM", "flowUtils", "ggplot2", "gmodels", "igraph", "limma", "Matrix", "matrixStats", "mclust", "pheatmap", "prettydoc", "RANN", "Rcpp", "Rtsne", "scatterpie", "scatterplot3d", "stringr", "sva", "umap"],
"broken": true
},
"DASiR": {
"name": "DASiR",
"version": "1.10.0",
"sha256": "1by2655qvskzynvbh47vydm6nl2cmnfqqs25453k29n672a6yyw4",
"depends": ["Biostrings", "GenomicRanges", "IRanges", "XML"],
"broken": true
},
"DAVIDQuery": {
"name": "DAVIDQuery",
"version": "1.29.0",
"sha256": "0gvm6qjx8y61nbnbz66md74pfc4awj4900pjr8q1m5sip5yzbxj2",
"depends": ["RCurl"],
"broken": true
},
"DBChIP": {
"name": "DBChIP",
"version": "1.14.0",
"sha256": "1x876cv2j0bdb7jflm663bp7xk32rsxpf9jwwskbl8r4r1ffsapa",
"depends": ["DESeq", "edgeR"],
"broken": true
},
"DChIPRep": {
"name": "DChIPRep",
"version": "1.0.4",
"sha256": "0cwggkpbza25r2yssyhs9zkwzncmxkd406k2sn2y0rq1kdi08hj2",
"depends": ["DESeq2", "GenomicRanges", "S4Vectors", "assertthat", "fdrtool", "ggplot2", "plyr", "reshape2", "smoothmest", "tidyr"],
"broken": true
},
"DEComplexDisease": {
"name": "DEComplexDisease",
"version": "1.18.0",
"sha256": "12gw9b0gdwyih51j2gzay6vxhycgc52n8svd0slv6wsbw5rc19lh",
"depends": ["BiocParallel", "ComplexHeatmap", "DESeq2", "edgeR", "Rcpp", "SummarizedExperiment"],
"broken": true
},
"DEDS": {
"name": "DEDS",
"version": "1.44.0",
"sha256": "079c3in183ybp0c46hqh99grqmbshsnrcax3qz08z5xbc394azna",
"depends": [],
"broken": true
},
"DELocal": {
"name": "DELocal",
"version": "1.8.0",
"sha256": "0hinzs1220hs7qfjv5na9cn7929wbrnvr409ay0vgphzkh92w30z",
"depends": ["DESeq2", "SummarizedExperiment", "dplyr", "ggplot2", "limma", "matrixStats", "reshape2"],
"broken": true
},
"DESeq": {
"name": "DESeq",
"version": "1.22.1",
"sha256": "14rc1zcn4a7hkm43ca9js5ffhcm3awjrpl5bx66fj3szibjnnzcb",
"depends": ["Biobase", "BiocGenerics", "MASS", "RColorBrewer", "genefilter", "geneplotter", "lattice", "locfit"],
"broken": true
},
"DIAlignR": {
"name": "DIAlignR",
"version": "2.12.0",
"sha256": "19zgjnd9sjxx09pcf50fl3w4fmd1gj8g765x114l0cqcpk9qfmm5",
"depends": ["DBI", "RMSNumpress", "RSQLite", "Rcpp", "RcppEigen", "ape", "bit64", "data_table", "dplyr", "ggplot2", "magrittr", "mzR", "phangorn", "pracma", "reticulate", "rlang", "signal", "tidyr", "zoo"],
"broken": true
},
"DMRforPairs": {
"name": "DMRforPairs",
"version": "1.6.0",
"sha256": "0b5mkhb5gkvfccvpgvklb3ksnq9gv6napcvxzcrph46nmm11i8zc",
"depends": ["GenomicRanges", "Gviz", "R2HTML"],
"broken": true
},
"DOQTL": {
"name": "DOQTL",
"version": "1.6.0",
"sha256": "0sl7a1hhszrfxn52iw7cz6sl38y7mwk4giw3a7kqj22f1p6bhc6y",
"depends": ["BSgenome_Mmusculus_UCSC_mm10", "Biobase", "BiocGenerics", "GenomicRanges", "IRanges", "QTLRel", "RUnit", "Rsamtools", "VariantAnnotation", "XML", "annotate", "annotationTools", "biomaRt", "corpcor", "doParallel", "foreach", "fpc", "hwriter", "iterators", "mclust", "regress", "rhdf5"],
"broken": true
},
"DeProViR": {
"name": "DeProViR",
"version": "1.0.0",
"sha256": "0m1nhzq5kl6jyi3d8fzb77iplzc4p85v7lj5q7i7125kjv6bycsm",
"depends": ["BiocFileCache", "PRROC", "caret", "data_table", "dplyr", "fmsb", "ggplot2", "keras", "pROC", "readr"],
"broken": true
},
"DeconRNASeq": {
"name": "DeconRNASeq",
"version": "1.50.0",
"sha256": "06dkxdikfgiay72z9p0kmk8bayvdbrg641cl39nwk109dms0vc6f",
"depends": ["ggplot2", "limSolve", "pcaMethods"],
"broken": true
},
"DeepBlueR": {
"name": "DeepBlueR",
"version": "1.27.0",
"sha256": "03v1ag250zq8wj3fxnsg2ii8l93vq6dg9dxqyiqdjnbvxc0y26xg",
"depends": ["data_table", "diffr", "dplyr", "filehash", "foreach", "GenomeInfoDb", "GenomicRanges", "R_utils", "RCurl", "rjson", "rtracklayer", "settings", "stringr", "withr", "XML"],
"broken": true
},
"Director": {
"name": "Director",
"version": "1.34.0",
"sha256": "0xvpr1j36q46dlfympsivv5kxxnhskywc4fhxk0010yvx92ngpsw",
"depends": ["htmltools"],
"broken": true
},
"DupChecker": {
"name": "DupChecker",
"version": "1.8.0",
"sha256": "0p75kq178mls765q2v22bj7a727hb1v5rj4wkcagxavcls92vg0p",
"depends": ["RCurl", "R_utils"],
"broken": true
},
"EBSeqHMM": {
"name": "EBSeqHMM",
"version": "1.4.0",
"sha256": "02ba8famhbp4nxkg8jkwzs63qkfi7hi03h6w1igl2xn2343fnla3",
"depends": ["EBSeq"],
"broken": true
},
"EDDA": {
"name": "EDDA",
"version": "1.8.0",
"sha256": "0gqgq57a11k7iygjyf3bszx8gm90a8frabmzib7kk84k3wrvynqg",
"depends": ["DESeq", "ROCR", "Rcpp", "baySeq", "edgeR", "snow"],
"broken": true
},
"ELBOW": {
"name": "ELBOW",
"version": "1.6.0",
"sha256": "1kpprsv1s08qks10raqdh82c9w8dg0saxa1ahhnk1a2whzxj0n3m",
"depends": [],
"broken": true
},
"ENCODExplorer": {
"name": "ENCODExplorer",
"version": "1.2.4",
"sha256": "0vx4q628g0h1wdcp4hibs44h8avnyin0ccxijrdk94s5n2f91pc2",
"depends": ["RSQLite", "jsonlite"],
"broken": true
},
"ENVISIONQuery": {
"name": "ENVISIONQuery",
"version": "1.18.0",
"sha256": "1fyp6qyvw5cbapnpjx1s86pss2xhv98s4lqxfxwrsng6p1jh5z89",
"depends": ["XML", "rJava"],
"broken": true
},
"EasyqpcR": {
"name": "EasyqpcR",
"version": "1.12.0",
"sha256": "0s0ir8bpj3fwg79mzqz57c0crkqqq7hywiwyihcz2cykhsm1r11g",
"depends": ["matrixStats", "plotrix", "plyr"],
"broken": true
},
"EnhancedVolcano": {
"name": "EnhancedVolcano",
"version": "1.26.0",
"sha256": "19dxqk5dk9443a3949y3b2dhcphhn2lvi6fvlakqxll2lvhjqivi",
"depends": ["ggplot2", "ggrepel"],
"broken": true
},
"ExpressionView": {
"name": "ExpressionView",
"version": "1.22.0",
"sha256": "1gwhz8q5kyi01jwlwpd39dp292pc6k4v1w0al4653151qb5m55ja",
"depends": ["AnnotationDbi", "GO_db", "KEGG_db", "bitops", "caTools", "eisa", "isa2"],
"broken": true
},
"FCBF": {
"name": "FCBF",
"version": "2.8.0",
"sha256": "1clg3s2av70j0pm0yj0ckvlklkkg5zb0r057pz6wmklllfkmx1dv",
"depends": ["ggplot2", "gridExtra", "mclust", "pbapply", "SummarizedExperiment"],
"broken": true
},
"FEM": {
"name": "FEM",
"version": "2.6.0",
"sha256": "1pwbn2igwrd50wn8402f3zwd22h4c8anjmbrls2i6h86ardl046f",
"depends": ["AnnotationDbi", "BiocGenerics", "Matrix", "corrplot", "graph", "igraph", "impute", "limma", "marray", "org_Hs_eg_db"],
"broken": true
},
"FScanR": {
"name": "FScanR",
"version": "1.10.0",
"sha256": "1v4iq2wlvxf0wbs2d9ip3pcfx3a533pqp4as9pr0f6q57cvqi2bs",
"depends": [],
"broken": true
},
"FindMyFriends": {
"name": "FindMyFriends",
"version": "1.0.7",
"sha256": "0ga0iwscbcczysldizgp8g19gsyszfw4vgbgs45q9px95603z0cg",
"depends": ["Biobase", "BiocParallel", "Biostrings", "IRanges", "Matrix", "Rcpp", "S4Vectors", "digest", "dplyr", "filehash", "ggdendro", "ggplot2", "gtable", "igraph", "kebabs", "reshape2"],
"broken": true
},
"FlowRepositoryR": {
"name": "FlowRepositoryR",
"version": "1.2.0",
"sha256": "1y1y7g9111z55cwi2ph44yqib41234g77xwsybk6irlq1anizz7p",
"depends": ["RCurl", "XML"],
"broken": true
},
"FoldGO": {
"name": "FoldGO",
"version": "1.18.0",
"sha256": "0h08yv1kykllaanc562ncwv3ajic7cd4wcqba24nlbh6agsazwyk",
"depends": ["ggplot2", "tidyr", "topGO"],
"broken": true
},
"FourCSeq": {
"name": "FourCSeq",
"version": "1.4.0",
"sha256": "1xh0l90hp6jy9j0xkh78dm9kyk90zzlg04yfrzd4v12mwljs8r19",
"depends": ["Biobase", "Biostrings", "DESeq2", "GenomicAlignments", "GenomicRanges", "LSD", "Matrix", "Rsamtools", "SummarizedExperiment", "fda", "ggbio", "ggplot2", "gtools", "reshape2", "rtracklayer"],
"broken": true
},
"FunChIP": {
"name": "FunChIP",
"version": "1.28.0",
"sha256": "1qhwabm7vgjqmgxdla6qs70sncvzjc8qh5vpq5xqp50hk1lli7f1",
"depends": ["doParallel", "fda", "foreach", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "RColorBrewer", "Rcpp", "Rsamtools", "shiny"],
"broken": true
},
"FunciSNP": {
"name": "FunciSNP",
"version": "1.12.0",
"sha256": "1125ismkp2sprshv4b39l6bycdlry3933jaliva17c0bgjr27jhm",
"depends": ["AnnotationDbi", "ChIPpeakAnno", "FunciSNP_data", "GenomicRanges", "IRanges", "Rsamtools", "TxDb_Hsapiens_UCSC_hg19_knownGene", "VariantAnnotation", "ggplot2", "org_Hs_eg_db", "plyr", "reshape", "rtracklayer", "scales", "snpStats"],
"broken": true
},
"GAPGOM": {
"name": "GAPGOM",
"version": "1.11.0",
"sha256": "0sl97w5zx4zdrdbcwayqyvgxspaxpbils3mpsrim0zlspjrjcy6z",
"depends": ["AnnotationDbi", "Biobase", "BiocFileCache", "data_table", "dplyr", "fastmatch", "GEOquery", "GO_db", "GOSemSim", "graph", "igraph", "magrittr", "Matrix", "matrixStats", "org_Hs_eg_db", "org_Mm_eg_db", "plyr", "RBGL"],
"broken": true
},
"GCSConnection": {
"name": "GCSConnection",
"version": "1.7.0",
"sha256": "1psmw3825whyzvbzqpqksgcl09b6kfyb8k5vny6ljkjbac1jzvnf",
"depends": ["googleAuthR", "googleCloudStorageR", "httr", "jsonlite", "Rcpp"],
"broken": true
},
"GCSFilesystem": {
"name": "GCSFilesystem",
"version": "1.6.0",
"sha256": "0qk8xyg06f71y4r1q1zpcj89irh9i6cd9z6nqlx635x8if84sh6d",
"depends": [],
"broken": true
},
"GCSscore": {
"name": "GCSscore",
"version": "1.14.0",
"sha256": "0fqr0sgplpbkdpvwgi8fpmwmnqja41622pvkkzsalbzai021hgp3",
"depends": ["affxparser", "Biobase", "BiocManager", "data_table", "devtools", "dplR", "RSQLite", "stringr"],
"broken": true
},
"GENE_E": {
"name": "GENE.E",
"version": "1.10.0",
"sha256": "1czm1j144i842d7lf01c9gmyifikp4a66sq49i7rgpzbiz3pndkf",
"depends": ["RCurl", "rhdf5"],
"broken": true
},
"GEOexplorer": {
"name": "GEOexplorer",
"version": "1.14.0",
"sha256": "144pj7aj93rjg315biizapg1m9yywyfx27pk9646klqnrnp2yxi5",
"depends": ["Biobase", "DT", "GEOquery", "R_utils", "XML", "car", "edgeR", "enrichR", "factoextra", "ggplot2", "heatmaply", "htmltools", "httr", "impute", "knitr", "limma", "markdown", "pheatmap", "plotly", "readxl", "scales", "shiny", "shinyHeatmaply", "shinybusy", "shinycssloaders", "stringr", "sva", "umap", "xfun", "xml2"],
"broken": true
},
"GEOsearch": {
"name": "GEOsearch",
"version": "1.0.1",
"sha256": "1zag3rg2cfs0zfh092rzwhshnkncrv2p88flz9hy2n350k1xnyc4",
"depends": ["org_Hs_eg_db", "org_Mm_eg_db"],
"broken": true
},
"GGBase": {
"name": "GGBase",
"version": "3.32.0",
"sha256": "15vvwigv9xy87dl2c795c3abpnrzr364m4sbslmns403rg8dpsiw",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "GenomicRanges", "IRanges", "Matrix", "S4Vectors", "SummarizedExperiment", "digest", "genefilter", "limma", "snpStats"],
"broken": true
},
"GGtools": {
"name": "GGtools",
"version": "5.6.0",
"sha256": "1ndvlyfzjn519z9zh6kf5sdjaz3ckracgyf2lxp23nchm2311lf0",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "Biostrings", "GGBase", "GenomeInfoDb", "GenomicRanges", "Gviz", "IRanges", "ROCR", "Rsamtools", "S4Vectors", "VariantAnnotation", "biglm", "bit", "data_table", "ff", "ggplot2", "hexbin", "iterators", "reshape2", "rtracklayer", "snpStats"],
"broken": true
},
"GISPA": {
"name": "GISPA",
"version": "1.26.0",
"sha256": "19vbcfdf959xs6kgds37ij3qay9x61dzrlvcs238m7hywl4dn3lz",
"depends": ["Biobase", "changepoint", "data_table", "genefilter", "GSEABase", "HH", "lattice", "latticeExtra", "plyr", "scatterplot3d"],
"broken": true
},
"GOFunction": {
"name": "GOFunction",
"version": "1.18.0",
"sha256": "00pdxf24sxdnh31h69c5zjhl1j2jv1ag91ay3a9w62p07bcg82l6",
"depends": ["AnnotationDbi", "Biobase", "GO_db", "Rgraphviz", "SparseM", "graph"],
"broken": true
},
"GOSim": {
"name": "GOSim",
"version": "1.8.0",
"sha256": "14dyazr7p9p7h1cckbmd5yjj76718lqgfnqbcrrz52qyk0dqz6wx",
"depends": ["AnnotationDbi", "GO_db", "Matrix", "RBGL", "Rcpp", "annotate", "cluster", "corpcor", "flexmix", "graph", "org_Hs_eg_db", "topGO"],
"broken": true
},
"GOsummaries": {
"name": "GOsummaries",
"version": "2.4.7",
"sha256": "0kl77jqd2bdbp8v2rrjp21j265r05fnagpz8jwj8m9scgrd5hwh4",
"depends": ["Rcpp", "gProfileR", "ggplot2", "gtable", "limma", "plyr", "reshape2"],
"broken": true
},
"GRridge": {
"name": "GRridge",
"version": "1.22.0",
"sha256": "0vmwm50dwk3im3qx40vh9ipmfqywzz5fmmm79b74zjcd3qjrznf3",
"depends": ["glmnet", "graph", "Iso", "mvtnorm", "penalized", "survival"],
"broken": true
},
"GeDi": {
"name": "GeDi",
"version": "1.4.0",
"sha256": "0mxnbk0xqwc8v4vn50s59gb8gxl5y4dwy8n6sg2ydd23qzd2al9p",
"depends": ["BiocFileCache", "BiocNeighbors", "BiocParallel", "ComplexHeatmap", "DT", "GOSemSim", "GeneTonic", "Matrix", "RColorBrewer", "STRINGdb", "bs4Dash", "circlize", "cluster", "dplyr", "fontawesome", "ggdendro", "ggplot2", "igraph", "plotly", "readxl", "rintrojs", "scales", "shiny", "shinyBS", "shinyWidgets", "shinycssloaders", "tm", "visNetwork", "wordcloud2"],
"broken": true
},
"GenVisR": {
"name": "GenVisR",
"version": "1.39.0",
"sha256": "1ax1r53zdjgmgfkj6y9hfd6w19wprpsm6mfbpi168cdskivnpva3",
"depends": ["AnnotationDbi", "BSgenome", "BiocGenerics", "Biostrings", "DBI", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "VariantAnnotation", "biomaRt", "data_table", "ggplot2", "gridExtra", "gtable", "gtools", "plyr", "reshape2", "scales", "viridis"],
"broken": true
},
"GeneAccord": {
"name": "GeneAccord",
"version": "1.15.0",
"sha256": "1dlnqdcrl1fv5yf0zwfgkqfd2x19fv6q84p7c730nmnnaqal6md1",
"depends": ["biomaRt", "caTools", "dplyr", "ggplot2", "ggpubr", "gtools", "magrittr", "maxLik", "RColorBrewer", "reshape2", "tibble"],
"broken": true
},
"GeneAnswers": {
"name": "GeneAnswers",
"version": "2.12.0",
"sha256": "1gacvc1vd0sl6jn0r14w4n37hsrmx6m5k1l7d2a5m3qssyk6l6n3",
"depends": ["Biobase", "Heatplus", "MASS", "RBGL", "RColorBrewer", "RCurl", "RSQLite", "XML", "annotate", "downloader", "igraph"],
"broken": true
},
"GeneGeneInteR": {
"name": "GeneGeneInteR",
"version": "1.33.0",
"sha256": "1wsm0l14mx2qd9gcs6m2n2pn0sgymf79fm8kvxjxvijqjv8n82ca",
"depends": ["FactoMineR", "GenomicRanges", "IRanges", "Rsamtools", "data_table", "igraph", "kernlab", "mvtnorm", "snpStats"],
"broken": true
},
"GeneSelector": {
"name": "GeneSelector",
"version": "2.20.0",
"sha256": "179mjqk9w4zm33mhja7hmwphpnxsv32mh60avs2mqmq9fi9z6pdh",
"depends": ["Biobase", "limma", "multtest", "samr", "siggenes"],
"broken": true
},
"GeneTonic": {
"name": "GeneTonic",
"version": "3.2.0",
"sha256": "1q61akm9sllrjbk3dy2mbvcv0fl10qyqvgvwaz1klixkfwi03hm3",
"depends": ["AnnotationDbi", "ComplexHeatmap", "ComplexUpset", "DESeq2", "DT", "GO_db", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "backbone", "bs4Dash", "circlize", "colorspace", "colourpicker", "dendextend", "dplyr", "dynamicTreeCut", "expm", "ggforce", "ggplot2", "ggrepel", "ggridges", "igraph", "matrixStats", "mosdef", "plotly", "rintrojs", "rlang", "rmarkdown", "scales", "shiny", "shinyAce", "shinyWidgets", "shinycssloaders", "tidyr", "tippy", "viridis", "visNetwork"],
"broken": true
},
"GeneticsDesign": {
"name": "GeneticsDesign",
"version": "1.38.0",
"sha256": "1yh8s40fr0yqbch7ix9y4p22ih0008xpjy5nn5x37y575l41hhwh",
"depends": ["gmodels", "gtools", "mvtnorm"],
"broken": true
},
"GenoGAM": {
"name": "GenoGAM",
"version": "2.11.0",
"sha256": "058qix2h0zm2k9csmbdhci2wqih3lyggjj591cqn0ls2nv7bnyvj",
"depends": ["BiocParallel", "Biostrings", "data_table", "DelayedArray", "DESeq2", "futile_logger", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "HDF5Array", "IRanges", "Matrix", "Rcpp", "RcppArmadillo", "rhdf5", "Rsamtools", "S4Vectors", "sparseinv", "SummarizedExperiment"],
"broken": true
},
"GenoView": {
"name": "GenoView",
"version": "1.3.0",
"sha256": "09k9xjmx3qmsfr3a4vrfgs73r0xsymf5m4gl0zjjk4cnfk7bs41v",
"depends": ["GenomicRanges", "biovizBase", "ggbio", "ggplot2", "gridExtra"],
"broken": true
},
"GenomeGraphs": {
"name": "GenomeGraphs",
"version": "1.30.0",
"sha256": "1wkjcg6w95wlrdgaskc3xndl0azmxhxnsipf9qrj057gf2rpx7zf",
"depends": ["biomaRt"],
"broken": true
},
"Genominator": {
"name": "Genominator",
"version": "1.24.0",
"sha256": "1rqzxbji5wh6dshjsprj1mzps08l07gxmjir9naj6lsj2q0xhn9p",
"depends": ["BiocGenerics", "DBI", "GenomeGraphs", "IRanges", "RSQLite"],
"broken": true
},
"GoogleGenomics": {
"name": "GoogleGenomics",
"version": "1.2.0",
"sha256": "1z87jmd5vzg5v93bv9k3998wqhnk5p2v9d2qr9g0xxjvxw2q78fm",
"depends": ["Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "VariantAnnotation", "httr", "rjson"],
"broken": true
},
"GraphPAC": {
"name": "GraphPAC",
"version": "1.12.1",
"sha256": "1fa64jam3cl1khv8jspwjb9myifmgx0kwg0b601bia578bjcdj7d",
"depends": ["RMallow", "TSP", "iPAC", "igraph"],
"broken": true
},
"HCsnip": {
"name": "HCsnip",
"version": "1.10.0",
"sha256": "0x4lpx13bhr2w5yhrcsc89g0x4q1dy0j588h210ziizgh67qqcrs",
"depends": ["Biobase", "clusterRepro", "coin", "fpc", "impute", "randomForestSRC", "sigaR", "sm", "survival"],
"broken": true
},
"HPAStainR": {
"name": "HPAStainR",
"version": "1.9.0",
"sha256": "1bjysi3x8248f262v4rzi2y50rlzryb987wbvdjy6af84nq7hd09",
"depends": ["data_table", "dplyr", "scales", "shiny", "stringr", "tibble", "tidyr"],
"broken": true
},
"HPiP": {
"name": "HPiP",
"version": "1.14.0",
"sha256": "0dbpzacyhwv0080ql3p3gsrmclb5sil9rj3kh2lf7b61qsikh701",
"depends": ["MCL", "PRROC", "caret", "corrplot", "dplyr", "ggplot2", "httr", "igraph", "magrittr", "pROC", "protr", "purrr", "readr", "stringr", "tibble", "tidyr"],
"broken": true
},
"HTSanalyzeR": {
"name": "HTSanalyzeR",
"version": "2.22.0",
"sha256": "01mb273v1i9k0d2gbl9mpmr4rrnx49s3srv0yh1znvmwx0hmfyq2",
"depends": ["AnnotationDbi", "BioNet", "GSEABase", "RankProd", "biomaRt", "cellHTS2", "graph", "igraph"],
"broken": true
},
"HTSeqGenie": {
"name": "HTSeqGenie",
"version": "3.20.1",
"sha256": "0bg86jiv45899gw9x4hhvqf525vfwkzj2b5jk7026cq5vmjc0k5j",
"depends": ["BiocGenerics", "BiocParallel", "Biostrings", "Cairo", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "ShortRead", "VariantAnnotation", "VariantTools", "chipseq", "gmapR", "hwriter", "rtracklayer"],
"broken": true
},
"Harshlight": {
"name": "Harshlight",
"version": "1.79.0",
"sha256": "1jm0ia06ls1m7dsbzp1hk68qi5wbqzhcf6x66534bj1kxdll17k7",
"depends": ["Biobase", "affy", "altcdfenvs"],
"broken": true
},
"HiCool": {
"name": "HiCool",
"version": "1.8.0",
"sha256": "0cnzbi4if3cn0lr78yh4a76kn3pv8c332w69s3l9gsqxvjx16kqs",
"depends": ["BiocIO", "GenomicRanges", "HiCExperiment", "IRanges", "InteractionSet", "S4Vectors", "basilisk", "dplyr", "plotly", "reticulate", "rmarkdown", "rmdformats", "sessioninfo", "stringr", "vroom"],
"broken": true
},
"HumanTranscriptomeCompendium": {
"name": "HumanTranscriptomeCompendium",
"version": "1.20.0",
"sha256": "1y46zsl08k6sdih8psar85fyc5dfk2vraxmfry70zx57vbjbin92",
"depends": ["BiocManager", "S4Vectors", "SummarizedExperiment", "shiny", "ssrch"],
"broken": true
},
"IMAS": {
"name": "IMAS",
"version": "1.32.0",
"sha256": "1b1vy4mdnna15ckmh6n5jqz4bkyq4izm5zij71brg3b21214c0ja",
"depends": ["AnnotationDbi", "BiocGenerics", "BiocParallel", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "IVAS", "Matrix", "Rsamtools", "S4Vectors", "doParallel", "foreach", "ggfortify", "ggplot2", "gridExtra", "lattice", "lme4", "survival"],
"broken": true
},
"IPPD": {
"name": "IPPD",
"version": "1.18.0",
"sha256": "1kl4rx6rdmpkm7bd2w8ncvz4sb8x6wljvxkif2l17yflsp1wjvp2",
"depends": ["MASS", "Matrix", "XML", "bitops", "digest"],
"broken": true
},
"IRISFGM": {
"name": "IRISFGM",
"version": "1.8.0",
"sha256": "1n13rsbg5y0xnr6in18silifx8jhqzjj1vb5kpjgy5ml55im1s5r",
"depends": ["AdaptGauss", "AnnotationDbi", "anocva", "clusterProfiler", "colorspace", "DEsingle", "DrImpute", "ggplot2", "ggpubr", "ggraph", "igraph", "knitr", "Matrix", "MCL", "mixtools", "org_Hs_eg_db", "org_Mm_eg_db", "pheatmap", "Polychrome", "RColorBrewer", "Rcpp", "scater", "scran", "Seurat", "SingleCellExperiment"],
"broken": true
},
"IdMappingAnalysis": {
"name": "IdMappingAnalysis",
"version": "1.14.0",
"sha256": "11rn1b6665b64h3a4mb8qkg5kp5l9ha6aa14f512k7lzs1vcczpm",
"depends": ["Biobase", "RColorBrewer", "R_oo", "boot", "mclust", "rChoiceDialogs"],
"broken": true
},
"IdMappingRetrieval": {
"name": "IdMappingRetrieval",
"version": "1.18.2",
"sha256": "0wl2ybv23z84rlq2szk46kvcdm0bmqy0mjga9n33wz1c04br2bxj",
"depends": ["AffyCompatible", "ENVISIONQuery", "RCurl", "R_methodsS3", "R_oo", "XML", "biomaRt", "rChoiceDialogs"],
"broken": true
},
"Imetagene": {
"name": "Imetagene",
"version": "1.0.0",
"sha256": "1di9nx5ad0wd17byn740azx9yb6hd12dzvlfl8s5iyas4z9qzwya",
"depends": ["ggplot2", "metagene", "shiny", "shinyBS", "shinyFiles", "shinythemes"],
"broken": true
},
"ImmuneSpaceR": {
"name": "ImmuneSpaceR",
"version": "1.30.0",
"sha256": "0lhilrh4xyw1cvqnx4b6g0llm9b1i4l2r476d4hmypkkgl25q8n7",
"depends": ["Biobase", "curl", "data_table", "digest", "flowCore", "flowWorkspace", "ggplot2", "gplots", "heatmaply", "httr", "jsonlite", "pheatmap", "plotly", "preprocessCore", "R6", "Rlabkey", "rmarkdown", "scales"],
"broken": true
},
"IntOMICS": {
"name": "IntOMICS",
"version": "1.2.0",
"sha256": "1qhni8p8zap9szi499jrdxkacdrb7vdd4va5h4n0kdi4qr80vrzh",
"depends": ["bestNormalize", "bnlearn", "bnstruct", "cowplot", "ggplot2", "ggraph", "gplots", "igraph", "matrixStats", "numbers", "RColorBrewer", "rlang", "SummarizedExperiment"],
"broken": true
},
"InterMineR": {
"name": "InterMineR",
"version": "1.26.0",
"sha256": "0isw4rg89139xmrcfb9r7jc3z8jj1my4radhinah0vad2cwb36l0",
"depends": ["Biostrings", "GenomicRanges", "IRanges", "RCurl", "RJSONIO", "S4Vectors", "SummarizedExperiment", "XML", "httr", "igraph", "sqldf", "xml2"],
"broken": true
},
"IsoGeneGUI": {
"name": "IsoGeneGUI",
"version": "2.6.0",
"sha256": "1b7my9ri3kwi4rbdymcnwdjzv88pgdfjf2ax4gls0v4460hwg5az",
"depends": ["Biobase", "Iso", "ORCME", "ORIClust", "RColorBrewer", "Rcpp", "ff", "geneplotter", "goric", "jpeg", "multtest", "relimp", "tkrplot", "xlsx"],
"broken": true
},
"KEGGprofile": {
"name": "KEGGprofile",
"version": "1.12.0",
"sha256": "08yg0vn7d0yyamwj8s9bg9130y1dag34w5j9dhi00x7381jnrxwr",
"depends": ["AnnotationDbi", "KEGGREST", "KEGG_db", "TeachingDemos", "XML", "biomaRt", "png"],
"broken": true
},
"LMGene": {
"name": "LMGene",
"version": "2.26.0",
"sha256": "0mfs8kpirwkv8salg6aacy0hr0zwmmxr7pzh88sxj3x71k2dclzi",
"depends": ["Biobase", "affy", "multtest", "survival"],
"broken": true
},
"LPEadj": {
"name": "LPEadj",
"version": "1.30.0",
"sha256": "0ll9n3wkaink16laj2y98hb0kx5dglz776zlwdfkw54l1fjvvj5h",
"depends": ["LPE"],
"broken": true
},
"LVSmiRNA": {
"name": "LVSmiRNA",
"version": "1.20.0",
"sha256": "1q43harvk7q5wb8yjffhvzs4dxl8h5vp60ngym5vcvapxr8iym3w",
"depends": ["Biobase", "BiocGenerics", "MASS", "SparseM", "affy", "limma", "quantreg", "vsn", "zlibbioc"],
"broken": true
},
"LinTInd": {
"name": "LinTInd",
"version": "1.12.0",
"sha256": "0hk602dvj93j3nqplm8nrxy51xl59ynplif63w5scbvngnvhlc9y",
"depends": ["BiocGenerics", "Biostrings", "IRanges", "S4Vectors", "ape", "cowplot", "data_tree", "dplyr", "ggnewscale", "ggplot2", "ggtree", "networkD3", "pheatmap", "purrr", "pwalign", "reshape2", "rlist", "stringdist", "stringr"],
"broken": true
},
"LineagePulse": {
"name": "LineagePulse",
"version": "1.21.0",
"sha256": "09x1i7slysqf3dpjzck6rgfzhyswaj0kk8i047yscg8fcaksbmqg",
"depends": ["BiocParallel", "circlize", "ComplexHeatmap", "ggplot2", "gplots", "knitr", "Matrix", "RColorBrewer", "SingleCellExperiment", "SummarizedExperiment"],
"broken": true
},
"LowMACA": {
"name": "LowMACA",
"version": "1.2.0",
"sha256": "12jm8psg7rnrsxydcqzfgiryy6lk5mxyximfzn7hnqqvxbs3wc55",
"depends": ["BiocParallel", "Biostrings", "LowMACAAnnotation", "RColorBrewer", "data_table", "motifStack", "reshape2", "stringr"],
"broken": true
},
"M3D": {
"name": "M3D",
"version": "1.4.0",
"sha256": "088ghd9r5jr51179cj9hbk1dpj4f9fkrbgyghlq29w2bbgzc57xx",
"depends": ["BiSeq", "GenomicRanges", "IRanges"],
"broken": true
},
"MACPET": {
"name": "MACPET",
"version": "1.15.1",
"sha256": "0742i3fxg2793lhgpxb4whh6mwvzd4bn86ykd0rv8sgilxyq5zsl",
"depends": ["BH", "bigmemory", "BiocParallel", "Biostrings", "futile_logger", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "GEOquery", "gtools", "InteractionSet", "intervals", "IRanges", "knitr", "plyr", "Rbowtie", "Rcpp", "Rsamtools", "rtracklayer", "S4Vectors", "ShortRead"],
"broken": true
},
"MADSEQ": {
"name": "MADSEQ",
"version": "1.34.0",
"sha256": "1fir4xvhg9n33wzq0s5191k9z1ywj02g8khz1337hp137i2vn6jy",
"depends": ["BSgenome", "BSgenome_Hsapiens_UCSC_hg19", "Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "SummarizedExperiment", "VGAM", "VariantAnnotation", "coda", "preprocessCore", "rjags", "rtracklayer", "vcfR", "zlibbioc"],
"broken": true
},
"MAGeCKFlute": {
"name": "MAGeCKFlute",
"version": "2.9.0",
"sha256": "1m2yq73q9wwv5kfybgnkdb877dy539x9vpx713pr6xjpkqvksfiv",
"depends": ["Biobase", "DOSE", "clusterProfiler", "depmap", "enrichplot", "ggplot2", "ggrepel", "gridExtra", "msigdbr", "pathview", "reshape2"],
"broken": true
},
"MCRestimate": {
"name": "MCRestimate",
"version": "2.26.0",
"sha256": "1igfffsgz6m4rl2a5fnkb92r5x4qjr2yl8gaj3ws8478q3aq0bgd",
"depends": ["Biobase", "RColorBrewer", "e1071", "golubEsets", "pamr", "randomForest"],
"broken": true
},
"MGFR": {
"name": "MGFR",
"version": "1.34.0",
"sha256": "02d2m9yj5yq66b638jrwavpy2fsl41chh3gb13b4k0sca120bbxb",
"depends": ["annotate", "biomaRt"],
"broken": true
},
"MIGSA": {
"name": "MIGSA",
"version": "1.21.0",
"sha256": "0b7w9lzi8xb1vzh7zahw7wh9jm7x1y04rs2gvvjmfbdfw085rdpm",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "BiocParallel", "data_table", "edgeR", "futile_logger", "ggdendro", "ggplot2", "GO_db", "GOstats", "graph", "GSEABase", "ismev", "jsonlite", "limma", "matrixStats", "org_Hs_eg_db", "RBGL", "reshape2", "Rgraphviz", "vegan"],
"broken": true
},
"MIMOSA": {
"name": "MIMOSA",
"version": "1.8.1",
"sha256": "1mkxp83gwxw581gz13vb8lbl2pff7al75lhjcvwxv6gxb1k272xi",
"depends": ["Biobase", "Formula", "MASS", "MCMCpack", "Rcpp", "RcppArmadillo", "coda", "data_table", "ggplot2", "modeest", "plyr", "pracma", "reshape", "scales", "testthat"],
"broken": true
},
"MMAPPR2": {
"name": "MMAPPR2",
"version": "1.14.0",
"sha256": "14m41hi79f7m2qigjjcgy08awrf0654ridgm6wxcq8cmmlm68g8a",
"depends": ["Biobase", "BiocGenerics", "BiocParallel", "data_table", "dplyr", "ensemblVEP", "GenomeInfoDb", "GenomicRanges", "gmapR", "IRanges", "magrittr", "Rsamtools", "S4Vectors", "stringr", "tidyr", "VariantAnnotation", "VariantTools"],
"broken": true
},
"MMDiff": {
"name": "MMDiff",
"version": "1.10.0",
"sha256": "0v000a87ciw83xj6p2443k1zs1w98ax38nzaf643wqmb8szwr6vf",
"depends": ["Biobase", "DiffBind", "GenomicRanges", "IRanges", "Rsamtools"],
"broken": true
},
"MMUPHin": {
"name": "MMUPHin",
"version": "1.22.0",
"sha256": "0d8i9b6pjwz409jd46fm1n9h21hzg8zgzpvchywpyc1k896fvz4l",
"depends": ["Maaslin2", "cowplot", "dplyr", "fpc", "ggplot2", "igraph", "metafor", "stringr", "tidyr"],
"broken": true
},
"MQmetrics": {
"name": "MQmetrics",
"version": "1.10.0",
"sha256": "15jkmdj2k5h8vbi332y7b4xzm2330g2s13l6lf2d1v9pg5aqrisq",
"depends": ["cowplot", "dplyr", "ggforce", "gghalves", "ggplot2", "ggpubr", "ggrepel", "gridExtra", "gtable", "knitr", "magrittr", "plyr", "purrr", "RColorBrewer", "readr", "reshape2", "rlang", "rmarkdown", "scales", "stringr", "tidyr"],
"broken": true
},
"MSEADbi": {
"name": "MSEADbi",
"version": "1.2.0",
"sha256": "1g1kg3nh7iwg5nrpmig6srw6as4yfwmbqn965pffrk0zp19llsbf",
"depends": ["AnnotationDbi", "Biobase", "DBI", "RSQLite"],
"broken": true
},
"MSGFgui": {
"name": "MSGFgui",
"version": "1.4.0",
"sha256": "0pb9i81pqnz05jrwqh9myz5zchdn8ng5nrsv3cmdg4713yskqpcw",
"depends": ["MSGFplus", "mzID", "mzR", "shiny", "shinyFiles", "xlsx"],
"broken": true
},
"MSGFplus": {
"name": "MSGFplus",
"version": "1.4.0",
"sha256": "1hw40kyhkxm0iy60n3y1cw2k52q5vjl47k4z5x34syq5d14iplva",
"depends": ["mzID"],
"broken": true
},
"MSstatsSampleSize": {
"name": "MSstatsSampleSize",
"version": "1.13.0",
"sha256": "09gmlqxb65pa4wxh5bryb6lhs68zrfaqfl7n3k9shvzi3iw02vp3",
"depends": ["BiocParallel", "caret", "ggplot2", "gridExtra", "MSstats", "reshape2"],
"broken": true
},
"MSstatsTMTPTM": {
"name": "MSstatsTMTPTM",
"version": "1.1.2",
"sha256": "16qnddwhwhjjfr5akdrmp93gkxq2r41s82hb1blbz47lwbj5kaj5",
"depends": ["dplyr", "ggplot2", "gridExtra", "MSstatsTMT", "Rcpp", "reshape2", "stringr"],
"broken": true
},
"Maaslin2": {
"name": "Maaslin2",
"version": "1.22.0",
"sha256": "10hdjhi1ykk513hzvs0bi6avzghqmkqns8knhz3ycv7bj3ynp70x",
"depends": ["MASS", "biglm", "car", "chemometrics", "cplm", "data_table", "dplyr", "edgeR", "ggplot2", "glmmTMB", "hash", "lme4", "lmerTest", "logging", "metagenomeSeq", "optparse", "pbapply", "pcaPP", "pheatmap", "pscl", "robustbase", "tibble", "vegan"],
"broken": true
},
"Macarron": {
"name": "Macarron",
"version": "1.12.2",
"sha256": "1gmpw9lf39hdvaqfwqkr3vbq32g5ik8i48njdfmq2f42kdmdpxy6",
"depends": ["BiocParallel", "DelayedArray", "Maaslin2", "RJSONIO", "SummarizedExperiment", "WGCNA", "data_table", "dynamicTreeCut", "ff", "httr", "logging", "plyr", "psych", "xml2"],
"broken": true
},
"MeSHSim": {
"name": "MeSHSim",
"version": "1.2.0",
"sha256": "1wgc2s1080sm2dn9ny4c1kpbcmbv4gv91h7jmgya9p8lk224aasr",
"depends": ["RCurl", "XML"],
"broken": true
},
"Melissa": {
"name": "Melissa",
"version": "1.24.0",
"sha256": "0y80p2jp4i7wsgqilaz1xkp573z97zxx0gwc7bg6d78bqsych11b",
"depends": ["BPRMeth", "BiocStyle", "GenomicRanges", "MCMCpack", "ROCR", "assertthat", "cowplot", "data_table", "doParallel", "foreach", "ggplot2", "magrittr", "matrixcalc", "mclust", "mvtnorm", "truncnorm"],
"broken": true
},
"MergeMaid": {
"name": "MergeMaid",
"version": "2.42.0",
"sha256": "1ajmrcpvzfjk0bkm2v3yklry91w5cxpjhgjr9hfszzldfhh5sfw4",
"depends": ["Biobase", "MASS", "survival"],
"broken": true
},
"MetMashR": {
"name": "MetMashR",
"version": "1.2.0",
"sha256": "1505j1jvmgnrxpbpkyh6am0baqmy312sc0fkg1dgzimq6pmwm170",
"depends": ["cowplot", "dplyr", "ggplot2", "ggthemes", "httr", "rlang", "scales", "struct"],
"broken": true
},
"MetaVolcanoR": {
"name": "MetaVolcanoR",
"version": "1.14.0",
"sha256": "11fxjv0kb65wc2237rh3340j72v3zsd4s019bi07rbpqnl246pnj",
"depends": ["cowplot", "data_table", "dplyr", "ggplot2", "htmlwidgets", "metafor", "metap", "plotly", "rlang", "tidyr", "topconfects"],
"broken": true
},
"Metab": {
"name": "Metab",
"version": "1.4.1",
"sha256": "0wi45k7lx7f7y8bfpa4d1lggnkxlwwyjgzw22xyfw9yj40ma5x9g",
"depends": ["pander", "svDialogs", "xcms"],
"broken": true
},
"MethCP": {
"name": "MethCP",
"version": "1.11.0",
"sha256": "099jaadjfalvxpwq3k630yrqa1dfbp8rqn2fahz1rsha3y5z9bys",
"depends": ["BiocParallel", "bsseq", "DNAcopy", "DSS", "GenomeInfoDb", "GenomicRanges", "IRanges", "methylKit", "S4Vectors"],
"broken": true
},
"Mirsynergy": {
"name": "Mirsynergy",
"version": "1.6.0",
"sha256": "0wb257fi5wygky6iqaxdhp8n3pxzknv1vy44ay55y0bal1nbkzwa",
"depends": ["Matrix", "RColorBrewer", "ggplot2", "gridExtra", "igraph", "reshape", "scales"],
"broken": true
},
"MmPalateMiRNA": {
"name": "MmPalateMiRNA",
"version": "1.20.0",
"sha256": "1salsb4askcv6xgzfwcwxkrr8qx7pjzqgljbw3ips2f4n6vqvyzj",
"depends": ["Biobase", "lattice", "limma", "statmod", "vsn", "xtable"],
"broken": true
},
"MoPS": {
"name": "MoPS",
"version": "1.4.0",
"sha256": "07bylvhv1wnzj3z2ycw4rb29mlz34sbpksl0sdk47q9f5cjgvlnf",
"depends": ["Biobase"],
"broken": true
},
"MobilityTransformR": {
"name": "MobilityTransformR",
"version": "1.6.0",
"sha256": "1292fk08zi1zf0hdj56vzdgv9h9nr16vmbzypqkam7lvqqnig49h",
"depends": ["MetaboCoreUtils", "MSnbase", "Spectra", "xcms"],
"broken": true
},
"MotIV": {
"name": "MotIV",
"version": "1.26.0",
"sha256": "0s26dklw8kav8lz0245as7y9znj4yfiknpmcgrdmm62rq04c11mp",
"depends": ["BiocGenerics", "Biostrings", "IRanges", "S4Vectors", "lattice", "rGADEM"],
"broken": true
},
"NBSplice": {
"name": "NBSplice",
"version": "1.15.0",
"sha256": "0yn7s7igshall34cflmdwvmknv8h1zdi6vg8svvcyn9fvzlgjdm8",
"depends": ["BiocParallel", "car", "edgeR", "ggplot2", "MASS", "reshape2"],
"broken": true
},
"NGScopy": {
"name": "NGScopy",
"version": "1.4.0",
"sha256": "1vs7mi0lb8jcm9yc0jz7rvdnj95fr06cf1jkb9p84pnm9vpn63d6",
"depends": ["changepoint"],
"broken": true
},
"NanoStringQCPro": {
"name": "NanoStringQCPro",
"version": "1.2.0",
"sha256": "1cbja0bi4sw3n4f1wkgbvmwh1hr49hhrybqxc6a7f8lvq11s28rf",
"depends": ["AnnotationDbi", "Biobase", "NMF", "RColorBrewer", "knitr", "org_Hs_eg_db", "png"],
"broken": true
},
"NarrowPeaks": {
"name": "NarrowPeaks",
"version": "1.14.0",
"sha256": "08nhw2ira3amjs9zl134afjqwi0hniq0g3mgmljjp1l0277b8acg",
"depends": ["BiocGenerics", "CSAR", "GenomeInfoDb", "GenomicRanges", "ICSNP", "IRanges", "S4Vectors", "fda"],
"broken": true
},
"NeighborNet": {
"name": "NeighborNet",
"version": "1.18.0",
"sha256": "046k1799wz77ww4jhf935pfz2637dmzy7p848iyjxj1yc5g51jq8",
"depends": ["graph"],
"broken": true
},
"NeuCA": {
"name": "NeuCA",
"version": "1.10.0",
"sha256": "0k5bqdrja3x238fyrd7dm5jm94igh25b0ipb2zj6scpa4m15n67l",
"depends": ["SingleCellExperiment", "e1071", "kableExtra", "keras", "limma"],
"broken": true
},
"NxtIRFcore": {
"name": "NxtIRFcore",
"version": "1.6.0",
"sha256": "1x3645v6ar8mpmyk6hd5w3m38496g68l2vdh80vh0hhlqlrp17n2",
"depends": ["AnnotationHub", "BiocFileCache", "BiocGenerics", "BiocParallel", "Biostrings", "BSgenome", "data_table", "DelayedArray", "DelayedMatrixStats", "fst", "genefilter", "GenomeInfoDb", "GenomicRanges", "ggplot2", "HDF5Array", "IRanges", "magrittr", "NxtIRFdata", "plotly", "R_utils", "Rcpp", "RcppProgress", "rhdf5", "rtracklayer", "S4Vectors", "SummarizedExperiment", "zlibbioc"],
"broken": true
},
"ODER": {
"name": "ODER",
"version": "1.6.0",
"sha256": "17c3hvdghli6i88yqy6dclzyad60s0d6y4hng6i4bycc9fnan41w",
"depends": ["BiocFileCache", "BiocGenerics", "dasper", "data_table", "derfinder", "dplyr", "GenomeInfoDb", "GenomicRanges", "ggplot2", "ggpubr", "ggrepel", "IRanges", "magrittr", "megadepth", "plyr", "purrr", "rtracklayer", "S4Vectors", "stringr", "tibble"],
"broken": true
},
"OGSA": {
"name": "OGSA",
"version": "1.0.0",
"sha256": "058lfd60w905jvhq99dsdcvl1q6h9dnwhqdqn942yr54jlkc7fjy",
"depends": ["Biobase", "gplots", "limma"],
"broken": true
},
"OmicsLonDA": {
"name": "OmicsLonDA",
"version": "1.15.0",
"sha256": "1kn26k0lnk7hgfzk1kh5bh41zkia8a4pzsfr35mbjrflcxmvgk2w",
"depends": ["BiocGenerics", "BiocParallel", "ggplot2", "gss", "plyr", "pracma", "SummarizedExperiment", "zoo"],
"broken": true
},
"OmicsMLRepoR": {
"name": "OmicsMLRepoR",
"version": "1.2.0",
"sha256": "0cfa80zylasvi7qbjiwsavl0yfn9ahji2sgzkfmi1lsbryppgyvc",
"depends": ["BiocFileCache", "DiagrammeR", "data_tree", "dplyr", "jsonlite", "lubridate", "plyr", "readr", "rlang", "rols", "stringr", "tibble", "tidyr"],
"broken": true
},
"OmicsMarkeR": {
"name": "OmicsMarkeR",
"version": "1.2.0",
"sha256": "1r4qn2p5fxyi6r9l7zgbga1n5wcy18whcvyx0cwrr7lawbzjn6yg",
"depends": ["caTools", "caret", "data_table", "e1071", "foreach", "gbm", "glmnet", "pamr", "permute", "plyr", "randomForest"],
"broken": true
},
"OmnipathR": {
"name": "OmnipathR",
"version": "3.16.0",
"sha256": "0l5zbb05f4rgykmppwfsdah1f6601zqq67jsd5y1ck76sl2hq4gc",
"depends": ["RSQLite", "R_utils", "XML", "checkmate", "crayon", "curl", "digest", "dplyr", "fs", "httr2", "igraph", "jsonlite", "later", "logger", "lubridate", "magrittr", "progress", "purrr", "rappdirs", "readr", "readxl", "rlang", "rmarkdown", "rvest", "sessioninfo", "stringi", "stringr", "tibble", "tidyr", "tidyselect", "vctrs", "withr", "xml2", "yaml", "zip"],
"broken": true
},
"OperaMate": {
"name": "OperaMate",
"version": "1.2.3",
"sha256": "1zgqf2ywazrxc66l2x8280izrzanan51b8vz5jwy8i7gnrm4gaa0",
"depends": ["fBasics", "gProfileR", "ggplot2", "gridExtra", "pheatmap", "reshape2", "stabledist"],
"broken": true
},
"OutlierD": {
"name": "OutlierD",
"version": "1.34.0",
"sha256": "19wrakxv833r5jqcrk627kgn6pissna9xdfnhn389a0j50xb02is",
"depends": ["Biobase", "quantreg"],
"broken": true
},
"PAPi": {
"name": "PAPi",
"version": "1.10.0",
"sha256": "0q90yi4s3jln713cpylgan7fzw7c536kw7bqlnkkaw6rjj1k6vvg",
"depends": ["KEGGREST", "svDialogs"],
"broken": true
},
"PAnnBuilder": {
"name": "PAnnBuilder",
"version": "1.34.0",
"sha256": "086hgqx9svn1pfzcz6affj2p9kvjk5k4viqkmwknlk9smw53l40l",
"depends": ["AnnotationDbi", "Biobase", "DBI", "RSQLite"],
"broken": true
},
"PCAtools": {
"name": "PCAtools",
"version": "2.20.0",
"sha256": "0jik25f4rpmr8gjy22i2myjhgsgqgslfjfskhv5bgkmqwbn931ar",
"depends": ["BH", "BiocParallel", "BiocSingular", "DelayedArray", "DelayedMatrixStats", "Matrix", "Rcpp", "beachmat", "cowplot", "dqrng", "ggplot2", "ggrepel", "lattice", "reshape2"],
"broken": true
},
"PCpheno": {
"name": "PCpheno",
"version": "1.32.0",
"sha256": "023dkbi3r1bs9wiihx3rcdc1dx5w21pfmk0n3n7zan4k5jkz4rwx",
"depends": ["AnnotationDbi", "Biobase", "Category", "GO_db", "GSEABase", "KEGG_db", "SLGI", "ScISI", "annotate", "graph", "ppiData", "ppiStats"],
"broken": true
},
"PERFect": {
"name": "PERFect",
"version": "1.14.0",
"sha256": "0ygbirfnp122c8jzrig5cnm6rxyhz126ixl5ca49i13kizcv2ns9",
"depends": ["fitdistrplus", "ggplot2", "Matrix", "phyloseq", "psych", "sn", "zoo"],
"broken": true
},
"PFP": {
"name": "PFP",
"version": "1.7.0",
"sha256": "1328a73ggg7l1drjbmv67jcvlv83khn1k252mf81xj4gf213d0di",
"depends": ["clusterProfiler", "ggplot2", "graph", "igraph", "KEGGgraph", "magrittr", "plyr", "tidyr"],
"broken": true
},
"PGA": {
"name": "PGA",
"version": "1.0.0",
"sha256": "1s4ddjlnxh1waw1sm428lnaq655qfzlmabcjgdm95fi2cg66vs86",
"depends": ["AnnotationDbi", "Biostrings", "GenomicFeatures", "GenomicRanges", "IRanges", "Nozzle_R1", "RCurl", "RSQLite", "Rsamtools", "VariantAnnotation", "biomaRt", "customProDB", "data_table", "ggplot2", "pheatmap", "rTANDEM", "rtracklayer", "stringr"],
"broken": true
},
"PGSEA": {
"name": "PGSEA",
"version": "1.44.0",
"sha256": "0cfz479nlmbal4bs5ah12q6jpp7989xic59rml87i19bcbhz8z26",
"depends": ["AnnotationDbi", "Biobase", "GO_db", "KEGG_db", "annaffy"],
"broken": true
},
"PICS": {
"name": "PICS",
"version": "2.51.0",
"sha256": "1fchi92ka52902c4prscm85acw8f7sjihz2nx8lrc0qz421msdv7",
"depends": ["GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools"],
"broken": true
},
"PING": {
"name": "PING",
"version": "2.51.0",
"sha256": "1fhw93llsslbn13679iph91klzpaqzi953zbxl4n9c9r2sbngsc9",
"depends": ["BSgenome", "BiocGenerics", "GenomicRanges", "Gviz", "IRanges", "PICS", "S4Vectors", "fda"],
"broken": true
},
"PSEA": {
"name": "PSEA",
"version": "1.4.0",
"sha256": "1df2v472s2g4qcylvg9y5gahgjzq0m753j65736c8lc7g2zbpacp",
"depends": ["Biobase", "MASS"],
"broken": true
},
"PSICQUIC": {
"name": "PSICQUIC",
"version": "1.8.3",
"sha256": "1g3xkbgr3by0gd8ngiavxyy14ixdhrwcf5ka329k3129d816425p",
"depends": ["BiocGenerics", "IRanges", "RCurl", "biomaRt", "httr", "plyr"],
"broken": true
},
"PanViz": {
"name": "PanViz",
"version": "1.6.0",
"sha256": "1h4fxqxkaph5j3vkfhmmkhvmqa8czzdzxcg6f06v94hqf38i86i5",
"depends": ["RColorBrewer", "colorspace", "data_table", "dplyr", "easycsv", "futile_logger", "igraph", "magrittr", "rentrez", "rlang", "stringr", "tibble", "tidyr"],
"broken": true
},
"PanVizGenerator": {
"name": "PanVizGenerator",
"version": "1.22.0",
"sha256": "0rhx2jc5kc9bl00v16frh8b4075n0jqn4s37pkvqp3ypcbqws32d",
"depends": ["igraph", "jsonlite", "pcaMethods", "shiny"],
"broken": true
},
"Pbase": {
"name": "Pbase",
"version": "0.10.0",
"sha256": "02b2vw63gwssy6bz8v6dvfmz2ak5pa7wzz341nrbr3mwv0k27j4q",
"depends": ["Biobase", "BiocGenerics", "Biostrings", "GenomicRanges", "Gviz", "IRanges", "MSnbase", "Pviz", "Rcpp", "S4Vectors", "biomaRt", "cleaver", "mzID", "mzR", "rtracklayer"],
"broken": true
},
"PhenStat": {
"name": "PhenStat",
"version": "2.44.0",
"sha256": "0gzhfy6mz3dazwy9hcb8ffgsfry6r4byl2a8b9qkir8ymv3q6s2p",
"depends": ["MASS", "car", "corrplot", "ggplot2", "graph", "knitr", "lme4", "logistf", "msgps", "nlme", "nortest", "pingr", "reshape"],
"broken": true
},
"Pi": {
"name": "Pi",
"version": "2.14.0",
"sha256": "16jh7p3f6nk2hwvp44b9sas1dl618m520xj553x9dkaj77jmzp6d",
"depends": ["BiocGenerics", "caret", "dplyr", "GenomeInfoDb", "GenomicRanges", "ggnetwork", "ggplot2", "ggrepel", "glmnet", "igraph", "IRanges", "lattice", "MASS", "Matrix", "osfr", "plot3D", "purrr", "randomForest", "RCircos", "readr", "ROCR", "scales", "supraHex", "tibble", "tidyr"],
"broken": true
},
"Pigengene": {
"name": "Pigengene",
"version": "1.34.0",
"sha256": "02f1p69ci15r3l52g3fxvb4mfn4ldpl3vkh9710ynfdbn67dg0r9",
"depends": ["BiocStyle", "C50", "DBI", "DOSE", "GO_db", "MASS", "ReactomePA", "Rgraphviz", "WGCNA", "bnlearn", "clusterProfiler", "dplyr", "gdata", "ggplot2", "graph", "impute", "matrixStats", "openxlsx", "partykit", "pheatmap", "preprocessCore"],
"broken": true
},
"Pirat": {
"name": "Pirat",
"version": "1.2.0",
"sha256": "0wky524d2j1qw80rwr8v211bqfkrdn4zfp5v2j8d24p9x3f9iyj6",
"depends": ["MASS", "S4Vectors", "SummarizedExperiment", "basilisk", "ggplot2", "invgamma", "progress", "reticulate"],
"broken": true
},
"PloGO2": {
"name": "PloGO2",
"version": "1.14.0",
"sha256": "0r0zf8dfb4pv4hv5fp5v61i3q5bnzwxws1v3cnx7l64b0hjl2ffi",
"depends": ["GO_db", "GOstats", "httr", "lattice", "openxlsx", "xtable"],
"broken": true
},
"PoTRA": {
"name": "PoTRA",
"version": "1.13.0",
"sha256": "1a32d1wndb24pxza3h53yddj9z2clff5srny2k00pbbfq1h99mjf",
"depends": ["BiocGenerics", "graph", "graphite", "igraph", "org_Hs_eg_db"],
"broken": true
},
"Polyfit": {
"name": "Polyfit",
"version": "1.4.0",
"sha256": "0rhs81hclz59nqirpp9y5n7qmg343s260n1gv8ma3c8j2jicb333",
"depends": ["DESeq"],
"broken": true
},
"PrecisionTrialDrawer": {
"name": "PrecisionTrialDrawer",
"version": "1.11.0",
"sha256": "1miw8rj1zn1xv97dkgs66k9g21i6gp3j2m1l1akysskczgam3i2c",
"depends": ["BiocParallel", "biomaRt", "brglm", "data_table", "DT", "GenomicRanges", "ggplot2", "ggrepel", "googleVis", "httr", "IRanges", "jsonlite", "LowMACAAnnotation", "magrittr", "matrixStats", "RColorBrewer", "reshape2", "S4Vectors", "shiny", "shinyBS", "stringr", "XML"],
"broken": true
},
"Prize": {
"name": "Prize",
"version": "1.0.0",
"sha256": "1a9hvhpa29ns7lhzmdqjlasp6rwrzng8klaw9cz54vdvc7al49wn",
"depends": ["diagram", "ggplot2", "gplots", "matrixcalc", "reshape2", "stringr"],
"broken": true
},
"ProCoNA": {
"name": "ProCoNA",
"version": "1.8.0",
"sha256": "0j0ld484cd98304fncyixi86qnxh72m8s83xxyk8c81kf7lzvhw1",
"depends": ["BiocGenerics", "GOstats", "MSnbase", "WGCNA", "flashClust"],
"broken": true
},
"ProteomicsAnnotationHubData": {
"name": "ProteomicsAnnotationHubData",
"version": "1.0.1",
"sha256": "1wxx6mq1xs7l24p82rs0wsmfxhrjx6nv1m7wf73i33vrcy83g2i6",
"depends": ["AnnotationHub", "AnnotationHubData", "Biobase", "BiocInstaller", "Biostrings", "GenomeInfoDb", "MSnbase", "RCurl", "mzR"],
"broken": true
},
"PubScore": {
"name": "PubScore",
"version": "1.8.0",
"sha256": "18bmzvv6mxrdlh297i29q24vi5rc4x2mjaryi5asiki186x0hy8d",
"depends": ["dplyr", "ggplot2", "ggrepel", "igraph", "intergraph", "network", "progress", "rentrez", "sna"],
"broken": true
},
"QUALIFIER": {
"name": "QUALIFIER",
"version": "1.14.1",
"sha256": "1h87y2q8x4ri6sv7nbppzpqa96m99mijq1739h8cfab5wmi0bcl5",
"depends": ["Biobase", "MASS", "XML", "data_table", "flowCore", "flowViz", "flowWorkspace", "hwriter", "lattice", "latticeExtra", "ncdfFlow", "reshape"],
"broken": true
},
"QuartPAC": {
"name": "QuartPAC",
"version": "1.2.0",
"sha256": "0nx3a9jsp2rq61jszm6kgpbqi9m5jkqfvk94npp7nk3qwhfi00j8",
"depends": ["GraphPAC", "SpacePAC", "data_table", "iPAC"],
"broken": true
},
"R453Plus1Toolbox": {
"name": "R453Plus1Toolbox",
"version": "1.58.0",
"sha256": "1jc585yid6s9aw2if073hqi50wgmlr7g4pkdwvgrcsck45g7llfg",
"depends": ["BSgenome", "Biobase", "BiocGenerics", "Biostrings", "GenomicRanges", "IRanges", "R2HTML", "Rsamtools", "S4Vectors", "ShortRead", "SummarizedExperiment", "TeachingDemos", "VariantAnnotation", "XVector", "biomaRt", "pwalign", "xtable"],
"broken": true
},
"RBioinf": {
"name": "RBioinf",
"version": "1.68.0",
"sha256": "1q58rgg9mwnj47r945gpnpgdrp2hpkhfmgrs8w8hrqv718v2dx58",
"depends": ["graph"],
"broken": true
},
"RCytoscape": {
"name": "RCytoscape",
"version": "1.20.1",
"sha256": "1ymbj8xlny9bsbcxyvg9si7v2rlc7bw3sq0424bsfc92l3as0rjj",
"depends": ["BiocGenerics", "graph"],
"broken": true
},
"RDAVIDWebService": {
"name": "RDAVIDWebService",
"version": "1.8.0",
"sha256": "1f92a80zksp90wlj2iymdf20hqkbp1aw7mdb7w5r19zckskcrg1m",
"depends": ["Category", "GO_db", "GOstats", "RBGL", "ggplot2", "graph", "rJava"],
"broken": true
},
"RGMQL": {
"name": "RGMQL",
"version": "1.24.0",
"sha256": "1p7s17i18ql3b8yvg6pmcz62ql18ncd3hqk0rganmahfbd91idby",
"depends": ["BiocGenerics", "GenomicRanges", "RGMQLlib", "S4Vectors", "data_table", "dplyr", "glue", "httr", "plyr", "rJava", "rtracklayer", "xml2"],
"broken": true
},
"RGalaxy": {
"name": "RGalaxy",
"version": "1.14.0",
"sha256": "1g63kmfywmnjammifjkqiy8cnqvb77d2x4yff8bgz2ib60gyqm14",
"depends": ["Biobase", "BiocGenerics", "XML", "digest", "optparse", "roxygen2"],
"broken": true
},
"RIPAT": {
"name": "RIPAT",
"version": "1.10.0",
"sha256": "154a79xyihxkg3sbwxz9ch0ixqlqv9gwkpsv88i55c75qyzkx2sm",
"depends": ["biomaRt", "GenomicRanges", "ggplot2", "IRanges", "karyoploteR", "openxlsx", "plyr", "regioneR", "rtracklayer", "stringr"],
"broken": true
},
"RIPSeeker": {
"name": "RIPSeeker",
"version": "1.10.0",
"sha256": "09pr25pf488vdim3k6mvbvqqyxhl2dfs4y699x8xyhym34c74xcj",
"depends": ["GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "SummarizedExperiment", "rtracklayer"],
"broken": true
},
"RLSeq": {
"name": "RLSeq",
"version": "1.5.2",
"sha256": "0nhip321gbv6phwdwi3qkbmhnfh7fhb9md6xs4lklskwkkrd7s1q",
"depends": ["AnnotationHub", "aws_s3", "callr", "caretEnsemble", "circlize", "ComplexHeatmap", "dplyr", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "ggplot2", "ggplotify", "ggprism", "pheatmap", "RColorBrewer", "regioneR", "rtracklayer", "valr", "VennDiagram"],
"broken": true
},
"RNASeqR": {
"name": "RNASeqR",
"version": "1.16.0",
"sha256": "0m7d3mm644n81630v2m6vv7798x3rjshb9jcp63xq631j1wmk63i",
"depends": ["ballgown", "Biostrings", "clusterProfiler", "corrplot", "DESeq2", "DOSE", "edgeR", "factoextra", "FactoMineR", "ggplot2", "gridExtra", "org_Hs_eg_db", "org_Sc_sgd_db", "pathview", "PerformanceAnalytics", "pheatmap", "rafalib", "reshape2", "reticulate", "Rsamtools", "stringr", "systemPipeR", "systemPipeRdata"],
"broken": true
},
"RNAdecay": {
"name": "RNAdecay",
"version": "1.28.0",
"sha256": "10d1ciz37rxgkbi2hnqqq2cqkwrfflx1gcyjb5gl0zl8076rvy3m",
"depends": ["TMB", "ggplot2", "gplots", "nloptr", "scales"],
"broken": true
},
"RNAinteract": {
"name": "RNAinteract",
"version": "1.18.0",
"sha256": "0v7hz20nsc2dkb4xjzdhib2rj8k9zkn2c71rhg46b6hy3jxrm7m1",
"depends": ["Biobase", "ICS", "ICSNP", "RColorBrewer", "abind", "cellHTS2", "geneplotter", "gplots", "hwriter", "lattice", "latticeExtra", "limma", "locfit", "splots"],
"broken": true
},
"RNAither": {
"name": "RNAither",
"version": "2.18.7",
"sha256": "1mgm6y5ijlw3rpfi0vkdlw0zrfd4ciz3qmmp42vykmm8c5jsjc0x",
"depends": ["RankProd", "biomaRt", "car", "geneplotter", "limma", "prada", "splots", "topGO"],
"broken": true
},
"RNAprobR": {
"name": "RNAprobR",
"version": "1.2.0",
"sha256": "017sc7ba5kw55rc74acv3i5i0mg7h5hblaqxy4j2ln6iqm1h38fi",
"depends": ["BiocGenerics", "Biostrings", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "Rsamtools", "plyr", "rtracklayer"],
"broken": true
},
"RWebServices": {
"name": "RWebServices",
"version": "1.34.0",
"sha256": "05czankzfvgsfrs2am8dkglzcix22s7gc4bgci0a66x8z31dlkx0",
"depends": ["RCurl", "SJava", "TypeInfo"],
"broken": true
},
"RamiGO": {
"name": "RamiGO",
"version": "1.16.0",
"sha256": "12mwfcljw323aqpzc4z5hl2h5qy51bpi5z59x4hx8inw3vc3n55y",
"depends": ["RCurl", "RCytoscape", "graph", "gsubfn", "igraph", "png"],
"broken": true
},
"RandomWalkRestartMH": {
"name": "RandomWalkRestartMH",
"version": "1.22.0",
"sha256": "0mvh22p0dliwapdgbl5r93dpjdfnvnxdv5ig3y9gd2ndn32h1cyc",
"depends": ["igraph", "Matrix"],
"broken": true
},
"Rariant": {
"name": "Rariant",
"version": "1.6.2",
"sha256": "1jf8p5i6jqlniwrmsk6ajcrf6j637cx267nvb2742yd1jzfm5yy3",
"depends": ["GenomeInfoDb", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "SomaticSignatures", "VGAM", "VariantAnnotation", "dplyr", "exomeCopy", "ggbio", "ggplot2", "reshape2", "shiny"],
"broken": true
},
"Rcade": {
"name": "Rcade",
"version": "1.12.0",
"sha256": "08q62agkyb810b0hfvs9vb9rh0ls8zrz83558xprijjizrkg9cg2",
"depends": ["GenomicRanges", "Rsamtools", "S4Vectors", "baySeq", "plotrix", "rgl"],
"broken": true
},
"Rchemcpp": {
"name": "Rchemcpp",
"version": "2.8.0",
"sha256": "0zz9s3zvxgs6mpiq085zy20sqajyx1645cz3848h2l0w1w5m6lga",
"depends": ["ChemmineR", "Rcpp"],
"broken": true
},
"RchyOptimyx": {
"name": "RchyOptimyx",
"version": "2.10.0",
"sha256": "0cmyjyr3dn8df9ss4zhhm6y1lhf68msl5br070x01i8kgh4dagky",
"depends": ["Rgraphviz", "flowType", "graph", "sfsmisc"],
"broken": true
},
"ReQON": {
"name": "ReQON",
"version": "1.16.0",
"sha256": "1j79vmhk34argysbjyxcsmfjsplkxq4cn8gprm6min1v08xzryg0",
"depends": ["Rsamtools", "rJava", "seqbias"],
"broken": true
},
"ReactomeContentService4R": {
"name": "ReactomeContentService4R",
"version": "1.12.0",
"sha256": "1qqrkki9v3ggwqv88n7w3wp50y4gxvkixrg1sad23vl08jd0rkl6",
"depends": ["data_table", "doParallel", "foreach", "httr", "jsonlite", "magick"],
"broken": true
},
"ReactomeGraph4R": {
"name": "ReactomeGraph4R",
"version": "1.12.0",
"sha256": "17xkrqyp5wdsdd0gpplsk3qfsr8sgf1ap0vz6v34xlhbmzdq3rs8",
"depends": ["ReactomeContentService4R", "data_table", "doParallel", "foreach", "getPass", "jsonlite", "magrittr", "neo4r", "purrr", "rlang"],
"broken": true
},
"RefNet": {
"name": "RefNet",
"version": "1.6.1",
"sha256": "0l0krjjk1jld7z5zy6k3z6m2qkqd86yj92xfck75q3bq3jm96h0j",
"depends": ["AnnotationHub", "BiocGenerics", "IRanges", "PSICQUIC", "RCurl", "shiny"],
"broken": true
},
"RefPlus": {
"name": "RefPlus",
"version": "1.40.0",
"sha256": "13qlm4smaafx1x78wn959wc1rm4wns7l6qgdmh1lg5khkrrh3x19",
"depends": ["Biobase", "affy", "affyPLM", "preprocessCore"],
"broken": true
},
"RepViz": {
"name": "RepViz",
"version": "1.24.0",
"sha256": "0822djg1akxrbz02wvvyn54b25nsrnhvwprnj4nj5bz981gcbn2p",
"depends": ["GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "biomaRt"],
"broken": true
},
"Repitools": {
"name": "Repitools",
"version": "1.54.0",
"sha256": "0k5vgpdnk4l0bi55dpidb2c6g13gyfia4xjzgsaliqaz3ss5w61x",
"depends": ["BSgenome", "BiocGenerics", "Biostrings", "DNAcopy", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "MASS", "Rsamtools", "Rsolnp", "S4Vectors", "cluster", "edgeR", "gplots", "rtracklayer"],
"broken": true
},
"Rfastp": {
"name": "Rfastp",
"version": "1.18.0",
"sha256": "0lbfwgy5iv7jbbfgsijcyd7kfx7r5lpj3k5xypfdcx8cj9mm3ysb",
"depends": ["Rcpp", "Rhtslib", "ggplot2", "reshape2", "rjson", "zlibbioc"],
"broken": true
},
"Rgin": {
"name": "Rgin",
"version": "1.15.0",
"sha256": "1x5zj2d5rvsr2xh0ifpnrys9v91dal1xxhv5mmk16rs8wzwqpqba",
"depends": ["RcppEigen"],
"broken": true
},
"Ringo": {
"name": "Ringo",
"version": "1.34.0",
"sha256": "0r549n840sq9whaz8nk7rz3wardxc8jvwdni4bd5f7zzrhj0ynhl",
"depends": ["Biobase", "BiocGenerics", "Matrix", "RColorBrewer", "genefilter", "lattice", "limma", "vsn"],
"broken": true
},
"Risa": {
"name": "Risa",
"version": "1.12.0",
"sha256": "0s23fbdk1v1cg0c67vhkz53wava1swjig8fz8jsv8av0pqb0rg17",
"depends": ["Biobase", "Rcpp", "affy", "biocViews", "xcms"],
"broken": true
},
"RmiR": {
"name": "RmiR",
"version": "1.26.0",
"sha256": "1nnpr5jp5anbqbgyg53qqjhi49bibymc0l3yj6ar5d6csavrympb",
"depends": ["DBI", "RmiR_Hs_miRNA"],
"broken": true
},
"Roleswitch": {
"name": "Roleswitch",
"version": "1.8.0",
"sha256": "0libkpp9scrbakhzp030bx86f4np6ijn01r8xzn02f5106h23gz7",
"depends": ["Biobase", "Biostrings", "DBI", "biomaRt", "microRNA", "plotrix", "pracma", "reshape"],
"broken": true
},
"Rolexa": {
"name": "Rolexa",
"version": "1.26.0",
"sha256": "184v27zycmqnj4fpjgrxl3vcxxfxwkbfqdzm6wsyxixm93rmz7v4",
"depends": ["Biostrings", "IRanges", "ShortRead", "mclust"],
"broken": true
},
"RpsiXML": {
"name": "RpsiXML",
"version": "2.12.0",
"sha256": "0zlcr1f5sf98bwxakbmq33kniwlpxcc32z5fz7vqsasyv5vbz1ks",
"depends": ["AnnotationDbi", "Biobase", "RBGL", "XML", "annotate", "graph", "hypergraph"],
"broken": true
},
"Rtreemix": {
"name": "Rtreemix",
"version": "1.69.0",
"sha256": "1sw0linj05wz2f9ax5809mcl1l7h16nvdk8xxl2pwgv78jkfzq8h",
"depends": ["Biobase", "Hmisc", "graph"],
"broken": true
},
"SAGx": {
"name": "SAGx",
"version": "1.44.0",
"sha256": "0rrw1y80ybpskwvcdbyqq8m4d17sz07bv9gpa27rvfq2sy4znsk6",
"depends": ["Biobase", "multtest"],
"broken": true
},
"SARC": {
"name": "SARC",
"version": "1.6.0",
"sha256": "04g3pq9az8jfffgq19y8lzlhjrwi7gjlynfcpxpqsy8dk3gw5fwj",
"depends": ["DescTools", "GenomicFeatures", "GenomicRanges", "IRanges", "RColorBrewer", "RaggedExperiment", "data_table", "ggplot2", "gridExtra", "gtable", "metap", "multtest", "plotly", "plyranges", "reshape2", "scales", "tidyverse"],
"broken": true
},
"SCATE": {
"name": "SCATE",
"version": "1.10.0",
"sha256": "1fkswn9xlbr4mrnr62yzk51dri7rzbvf28whh7qhdfxgyvavw439",
"depends": ["GenomicAlignments", "GenomicRanges", "mclust", "preprocessCore", "Rtsne", "SCATEData", "splines2", "xgboost"],
"broken": true
},
"SEPA": {
"name": "SEPA",
"version": "1.0.0",
"sha256": "1hvkz3pyp8qkq1mjw9wl426db6n3ay05bx2djkdpvpbai4fjwgvc",
"depends": ["ggplot2", "org_Hs_eg_db", "org_Mm_eg_db", "reshape2", "segmented", "shiny", "topGO"],
"broken": true
},
"SEPIRA": {
"name": "SEPIRA",
"version": "1.20.0",
"sha256": "1yhlm6l9jv8fhdhnhpj7r8cdpnrp1la287x85gcssqjnv5v4k047",
"depends": ["corpcor", "limma"],
"broken": true
},
"SGCP": {
"name": "SGCP",
"version": "1.8.0",
"sha256": "0jagx4ygl1sz32l4hskqn87qmnpqwdjj2y0basa07gapny3df879",
"depends": ["DescTools", "GO_db", "GOstats", "RColorBrewer", "RSpectra", "Rgraphviz", "SummarizedExperiment", "annotate", "caret", "dplyr", "expm", "genefilter", "ggplot2", "ggridges", "graph", "openxlsx", "org_Hs_eg_db", "plyr", "reshape2", "xtable"],
"broken": true
},
"SISPA": {
"name": "SISPA",
"version": "1.0.0",
"sha256": "01kf83hlc7qyyxr4dx86m9vc16cydrkw4sajs2ikpn2fnrqkx6z1",
"depends": ["GSVA", "changepoint", "data_table", "ggplot2", "plyr"],
"broken": true
},
"SJava": {
"name": "SJava",
"version": "0.96.0",
"sha256": "17qvrd8n0vrn9fn9p31s2bhzf6064hnf89c54hbx3flzki73waaz",
"depends": [],
"broken": true
},
"SLGI": {
"name": "SLGI",
"version": "1.30.0",
"sha256": "1pardqmvmi4877q09n3379wq57pyqla53s8gxvygrqny2drb5crj",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "GO_db", "ScISI", "lattice"],
"broken": true
},
"SMAP": {
"name": "SMAP",
"version": "1.34.0",
"sha256": "07mdnmirsbz8m5zky169q2mqdn1sdh1nlx8qsgdf8h0n0vcs2h3z",
"depends": [],
"broken": true
},
"SNPchip": {
"name": "SNPchip",
"version": "2.16.0",
"sha256": "1fxskvkzn0mfcg2zjs2r2fr0pifrha54a15vbxxcawy4pggf7fdv",
"depends": ["Biobase", "GenomeInfoDb", "GenomicRanges", "IRanges", "SummarizedExperiment", "foreach", "lattice", "oligoClasses"],
"broken": true
},
"SQLDataFrame": {
"name": "SQLDataFrame",
"version": "1.22.0",
"sha256": "1hhllinhlb4byhjizkh68lk7rjxwgg1w7s4ngd99dlws814gav1z",
"depends": ["BiocGenerics", "DBI", "DelayedArray", "RSQLite", "S4Vectors", "duckdb"],
"broken": true
},
"SQUADD": {
"name": "SQUADD",
"version": "1.20.0",
"sha256": "1nxf68waqnm9jaj0r8z1499kw5c6l1sykj38wikcc39bsyy23kxm",
"depends": ["RColorBrewer"],
"broken": true
},
"SSPA": {
"name": "SSPA",
"version": "2.10.0",
"sha256": "1835g6chjrl1kz5zc710jy0lx04b84khk2kx981ga6rmlihn5xyc",
"depends": ["lattice", "limma", "qvalue"],
"broken": true
},
"STAN": {
"name": "STAN",
"version": "1.4.0",
"sha256": "0phrznzv3n9nvjbxb172ywxcc6dfjz2gw21w4nzxiwcjaf3kg841",
"depends": ["Rsolnp"],
"broken": true
},
"STROMA4": {
"name": "STROMA4",
"version": "1.24.0",
"sha256": "1x3zgxkcck8ffh89mql45cp54c94n64kf9x6dan9wl24bj3x869f",
"depends": ["Biobase", "BiocParallel", "cluster", "matrixStats"],
"broken": true
},
"STdeconvolve": {
"name": "STdeconvolve",
"version": "1.8.0",
"sha256": "0pyyxmh4bnavsdw6riv72y5m8l53mfr0lpiy9mh0qn57rlmw5fr9",
"depends": ["BiocParallel", "Matrix", "clue", "ggplot2", "mgcv", "reshape2", "scatterpie", "slam", "topicmodels", "viridis"],
"broken": true
},
"SVM2CRM": {
"name": "SVM2CRM",
"version": "1.2.0",
"sha256": "06jhyvq3j35skvkf57iqfphypsv43k12i0wybhhvx4wjsdrrhmwq",
"depends": ["AnnotationDbi", "GenomicRanges", "IRanges", "LiblineaR", "ROCR", "SVM2CRMdata", "mclust", "pls", "rtracklayer", "squash", "verification", "zoo"],
"broken": true
},
"ScISI": {
"name": "ScISI",
"version": "1.42.0",
"sha256": "0bmpl2zaalwxhhc9vj9v3x8ig6hbj4lrbfl2dxmivgsh1hqvbcli",
"depends": ["AnnotationDbi", "GO_db", "RpsiXML", "annotate", "apComplex", "org_Sc_sgd_db"],
"broken": true
},
"ScreenR": {
"name": "ScreenR",
"version": "1.10.0",
"sha256": "10mbdr4bf4pv8m8d6smppr6yrcsdk1dkx87qb9rr6fqvf3xwvdsq",
"depends": ["dplyr", "edgeR", "ggplot2", "ggvenn", "limma", "magrittr", "patchwork", "purrr", "rlang", "scales", "stringr", "tibble", "tidyr", "tidyselect"],
"broken": true
},
"SigFuge": {
"name": "SigFuge",
"version": "1.46.0",
"sha256": "0x9px4mm24r2ffw1vd26rdm0ibv0023amsjhda59gkwxdgppkgj7",
"depends": ["GenomicRanges", "ggplot2", "matlab", "reshape", "sigclust"],
"broken": true
},
"SimBindProfiles": {
"name": "SimBindProfiles",
"version": "1.8.0",
"sha256": "1cyqlzb6vykxndslwvmj9sn7hzrq3lqjwsmvkvl7ivfigrslg142",
"depends": ["Biobase", "Ringo", "limma", "mclust"],
"broken": true
},
"SomatiCA": {
"name": "SomatiCA",
"version": "2.1.0",
"sha256": "1a4c8hnl93mnqmm9abc2njcqrlynzbsf39im2gi3ypyjnzabs7m8",
"depends": ["DNAcopy", "GenomicRanges", "IRanges", "doParallel", "foreach", "lars", "mvtnorm", "rebmix", "sn"],
"broken": true
},
"SpacePAC": {
"name": "SpacePAC",
"version": "1.8.0",
"sha256": "11szjavnv8b3sdqdzda3vsx3rbzmnzdimm4b37lm3rfqzrs14qhc",
"depends": ["iPAC"],
"broken": true
},
"SpidermiR": {
"name": "SpidermiR",
"version": "1.32.0",
"sha256": "07s421c8ashww8x99ac18fy1lvjl4zmm3jsz0fggw1gvii172c1x",
"depends": ["AnnotationDbi", "gdata", "httr", "igraph", "miRNAtap", "miRNAtap_db", "org_Hs_eg_db"],
"broken": true
},
"StarBioTrek": {
"name": "StarBioTrek",
"version": "1.28.0",
"sha256": "0cpgn0zcimg18yybfgrjzdczsinvx6n81jjm850gbi76ararq8sc",
"depends": ["AnnotationDbi", "e1071", "ggplot2", "graphite", "igraph", "MLmetrics", "reshape2", "ROCR", "SpidermiR"],
"broken": true
},
"Starr": {
"name": "Starr",
"version": "1.26.0",
"sha256": "0ra9x1kzr0r2wa1ihapzmldq0fdr91rfbbglmzjnq92wrw6rvkd2",
"depends": ["MASS", "Ringo", "affxparser", "affy", "pspline", "zlibbioc"],
"broken": true
},
"SummarizedBenchmark": {
"name": "SummarizedBenchmark",
"version": "2.20.0",
"sha256": "16gzlkyf76fcd46ck417sxh86smivmaggqvyg0v9v0f4jac7610g",
"depends": ["BiocGenerics", "BiocParallel", "crayon", "digest", "dplyr", "ggplot2", "mclust", "rlang", "S4Vectors", "sessioninfo", "stringr", "SummarizedExperiment", "tibble", "tidyr", "UpSetR"],
"broken": true
},
"Sushi": {
"name": "Sushi",
"version": "1.8.0",
"sha256": "1ldvv1028chnh8ng85534k924cgdmzqb3i18z6xpacsjgg5k7s7l",
"depends": ["biomaRt", "zoo"],
"broken": true
},
"SwimR": {
"name": "SwimR",
"version": "1.8.0",
"sha256": "0vwjrpm4qbhc8afv0zj0al3rv06izp649kz8h3pb1yixw4bwrxg8",
"depends": ["R2HTML", "gplots", "signal"],
"broken": true
},
"TCGAbiolinksGUI": {
"name": "TCGAbiolinksGUI",
"version": "1.23.0",
"sha256": "16757szccczlv1q35y1cnmlkr12s46f63z7ijffpb15q85xlaqdx",
"depends": ["caret", "clusterProfiler", "colourpicker", "data_table", "downloader", "DT", "ELMER", "ggplot2", "ggrepel", "maftools", "pathview", "plotly", "readr", "sesame", "shiny", "shinyBS", "shinydashboard", "shinyFiles", "shinyjs", "stringr", "SummarizedExperiment", "TCGAbiolinks", "TCGAbiolinksGUI_data"],
"broken": true
},
"TDARACNE": {
"name": "TDARACNE",
"version": "1.20.0",
"sha256": "0jf89s2bnz8psd7vqh3l29ch5mb2ilky2jmv8db4kcqaw9157kn8",
"depends": ["Biobase", "Rgraphviz"],
"broken": true
},
"TNBC_CMS": {
"name": "TNBC.CMS",
"version": "1.18.0",
"sha256": "1syygq9br5icbjbmi1kq9gs7g3bw1vzmy8mlf8ga2rk1lw6ika90",
"depends": ["e1071", "forestplot", "GGally", "ggplot2", "ggpubr", "GSVA", "pheatmap", "pracma", "quadprog", "R_utils", "RColorBrewer", "SummarizedExperiment", "survival"],
"broken": true
},
"TSRchitect": {
"name": "TSRchitect",
"version": "1.20.0",
"sha256": "1v9zz8ny9rwkyz98cv49l9ilh68h8mvm2x44n8i8rvjayc50zi9i",
"depends": ["AnnotationHub", "BiocGenerics", "BiocParallel", "dplyr", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "gtools", "IRanges", "readxl", "Rsamtools", "rtracklayer", "S4Vectors", "SummarizedExperiment"],
"broken": true
},
"TSSi": {
"name": "TSSi",
"version": "1.16.2",
"sha256": "0lvvzhm0npm9hc7n9rw9ipqgp7kgyvciapai0y8l4r3c07wh8nbs",
"depends": ["Biobase", "BiocGenerics", "Hmisc", "IRanges", "S4Vectors", "minqa", "plyr"],
"broken": true
},
"TarSeqQC": {
"name": "TarSeqQC",
"version": "1.0.3",
"sha256": "06a9kvyx73ysllid9mafgyp1czhyf06gxma1b6bkyksingpgnb68",
"depends": ["BiocGenerics", "BiocParallel", "GenomeInfoDb", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "cowplot", "ggplot2", "openxlsx", "plyr", "reshape2"],
"broken": true
},
"TimeSeriesExperiment": {
"name": "TimeSeriesExperiment",
"version": "1.13.0",
"sha256": "0bdpxxr739qdg92qabfx122k9f43vw2hyxp4yxqlbp37vzgcdf2c",
"depends": ["DESeq2", "dplyr", "dynamicTreeCut", "edgeR", "ggplot2", "Hmisc", "limma", "magrittr", "proxy", "S4Vectors", "SummarizedExperiment", "tibble", "tidyr", "vegan", "viridis"],
"broken": true
},
"TimiRGeN": {
"name": "TimiRGeN",
"version": "1.11.0",
"sha256": "104j3rdl1mfklqvpsr753zlplr001cqbkphbhf2xrcfw8si7bgr2",
"depends": ["biomaRt", "clusterProfiler", "dplyr", "FreqProf", "ggdendro", "gghighlight", "ggplot2", "gplots", "gtools", "igraph", "Mfuzz", "MultiAssayExperiment", "RCy3", "readxl", "reshape2", "rWikiPathways", "scales", "stringr", "tidyr"],
"broken": true
},
"TitanCNA": {
"name": "TitanCNA",
"version": "1.45.0",
"sha256": "19znhy9gd40fcv3m1zx6kdh178f74j88rb5pkrdv53q48vcq68l3",
"depends": ["BiocGenerics", "GenomeInfoDb", "GenomicRanges", "IRanges", "VariantAnnotation", "data_table", "dplyr", "foreach"],
"broken": true
},
"ToPASeq": {
"name": "ToPASeq",
"version": "1.4.0",
"sha256": "18fwifmih7x4wr7s3nr8qwvxbp0a33qj39sfwkvhr97jqdggb78j",
"depends": ["AnnotationDbi", "Biobase", "DESeq", "DESeq2", "GenomicRanges", "KEGGgraph", "RBGL", "R_utils", "Rcpp", "Rgraphviz", "TeachingDemos", "clipper", "doParallel", "edgeR", "fields", "gRbase", "graph", "graphite", "limma", "locfit", "qpgraph"],
"broken": true
},
"TraRe": {
"name": "TraRe",
"version": "1.5.0",
"sha256": "06w5rk2wjam5dhiya9n6kjbjahw4i46cb05zvakcy0f8gwrvb9ic",
"depends": ["BiocParallel", "dqrng", "ggplot2", "glmnet", "gplots", "gtools", "hash", "igraph", "matrixStats", "pvclust", "R_utils", "SummarizedExperiment"],
"broken": true
},
"TransView": {
"name": "TransView",
"version": "1.14.0",
"sha256": "02as66pzhgls2papji5mqpaczvdfpi6af0mafip8i9hj06z41wci",
"depends": ["GenomicRanges", "IRanges", "Rsamtools", "gplots", "zlibbioc"],
"broken": true
},
"Travel": {
"name": "Travel",
"version": "1.6.0",
"sha256": "074v9hl4gzy8081mlas3mjaplchjrmk2bl4f5nkdjclh46xf3wgg",
"depends": ["Rcpp"],
"broken": true
},
"TypeInfo": {
"name": "TypeInfo",
"version": "1.36.0",
"sha256": "0f0cllsf0pw2bgvq9fhfksqsxb2820js5y125vhcr0ns5kcvi07y",
"depends": [],
"broken": true
},
"Vega": {
"name": "Vega",
"version": "1.18.0",
"sha256": "0f7rzzckd69xbnism0v7jl0dly55lwj30nla7yj88qqalnb7ajzs",
"depends": [],
"broken": true
},
"XBSeq": {
"name": "XBSeq",
"version": "1.0.2",
"sha256": "01h3hj4mm7dr16vwbra5iazrgar9nbh2gs2gklyx0wqjfzm3gj49",
"depends": ["Biobase", "DESeq2", "Delaporte", "dplyr", "ggplot2", "locfit", "magrittr", "matrixStats", "pracma"],
"broken": true
},
"XCIR": {
"name": "XCIR",
"version": "1.7.0",
"sha256": "0n42pw01wv1sk06hby9kwijx6zwaw4lrlpsa0wlkrkf323slkllw",
"depends": ["biomaRt", "data_table", "ggplot2", "IRanges", "readxl", "S4Vectors", "seqminer", "VariantAnnotation"],
"broken": true
},
"XNAString": {
"name": "XNAString",
"version": "1.15.0",
"sha256": "1q50h6fvkc8fr5kvz3whvfiqx3fkxi8m7r1h459sqk362j9pydrj",
"depends": ["BSgenome", "Biostrings", "GenomicRanges", "IRanges", "Rcpp", "S4Vectors", "data_table", "formattable", "future_apply", "pwalign", "stringi", "stringr"],
"broken": true
},
"affyPara": {
"name": "affyPara",
"version": "1.30.0",
"sha256": "14g7xrzsqqsr2h20nv000dd3v71wq18bq78r345w29fs53kipxxd",
"depends": ["affy", "affyio", "aplpack", "snow", "vsn"],
"broken": true
},
"affyQCReport": {
"name": "affyQCReport",
"version": "1.48.0",
"sha256": "0cw6z8idar5qa9y3svrm5fdimdamb2xjjj59d107h2in7bvgni7j",
"depends": ["Biobase", "RColorBrewer", "affy", "affyPLM", "genefilter", "lattice", "simpleaffy", "xtable"],
"broken": true
},
"affypdnn": {
"name": "affypdnn",
"version": "1.44.0",
"sha256": "1av7a8w86wcslbl3q2zbnga8rww3n7dmwdywq4fm86pbmwh1jz9v",
"depends": ["affy"],
"broken": true
},
"alpine": {
"name": "alpine",
"version": "1.26.0",
"sha256": "1md4m9ln1mpxf7d2h7jnsjyi4zrviiqn9fzk1gkz2n6qj7jwpqbb",
"depends": ["Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "graph", "IRanges", "RBGL", "Rsamtools", "S4Vectors", "speedglm", "stringr", "SummarizedExperiment"],
"broken": true
},
"alsace": {
"name": "alsace",
"version": "1.6.0",
"sha256": "1vrwi2rkccgiwgshz5rxyr55dl7awbh1drbhhsrbpjsbzxwmiv4a",
"depends": ["ALS", "ptw"],
"broken": true
},
"ampliQueso": {
"name": "ampliQueso",
"version": "1.8.0",
"sha256": "0v21y2nd0qwnag0n6h0krr9c0vpv6ig89d0jsi58x3pi5m0mypip",
"depends": ["DESeq", "VariantAnnotation", "doParallel", "edgeR", "foreach", "genefilter", "ggplot2", "gplots", "knitr", "rgl", "rnaSeqMap", "samr", "statmod", "xtable"],
"broken": true
},
"amplican": {
"name": "amplican",
"version": "1.30.0",
"sha256": "0y5bknkn6l32bk2ia0dv3c8pp2dx2n83iwhbqh0l13jajv8j1csd",
"depends": ["BiocGenerics", "BiocParallel", "Biostrings", "GenomeInfoDb", "GenomicRanges", "IRanges", "Matrix", "Rcpp", "S4Vectors", "ShortRead", "cluster", "data_table", "dplyr", "ggplot2", "ggthemes", "gridExtra", "gtable", "knitr", "matrixStats", "pwalign", "rmarkdown", "stringr", "waffle"],
"broken": true
},
"arrayQualityMetrics": {
"name": "arrayQualityMetrics",
"version": "3.64.0",
"sha256": "1kz2d40wx2ksy9dz1z3wylcj7y7ad9z8xphsnz39j02m4g5mbvlp",
"depends": ["Biobase", "Hmisc", "RColorBrewer", "XML", "affy", "affyPLM", "beadarray", "genefilter", "gridSVG", "hwriter", "lattice", "latticeExtra", "limma", "setRNG", "svglite", "vsn"],
"broken": true
},
"barcodetrackR": {
"name": "barcodetrackR",
"version": "1.16.0",
"sha256": "1n2rj50gwqmqj5gs5d3asd3gcs0iv1rr1zh12s55lcsdxyfgp1ar",
"depends": ["RColorBrewer", "S4Vectors", "SummarizedExperiment", "circlize", "cowplot", "dplyr", "ggdendro", "ggplot2", "ggridges", "magrittr", "plyr", "proxy", "rlang", "scales", "shiny", "tibble", "tidyr", "vegan", "viridis"],
"broken": true
},
"beadarray": {
"name": "beadarray",
"version": "2.58.0",
"sha256": "0m9hmy4xn7q2v4ra95b9h08d0qh5qmjgqmg96vabyv46gn5i7qp4",
"depends": ["AnnotationDbi", "BeadDataPackR", "Biobase", "BiocGenerics", "GenomicRanges", "IRanges", "ggplot2", "hexbin", "illuminaio", "limma", "reshape2"],
"broken": true
},
"beadarraySNP": {
"name": "beadarraySNP",
"version": "1.36.0",
"sha256": "1dj5zi9lkyq5lgrcmr08cjdv3ysfa6p9zc8jza8mm6vy14qsl5ah",
"depends": ["Biobase", "quantsmooth"],
"broken": true
},
"benchdamic": {
"name": "benchdamic",
"version": "1.14.3",
"sha256": "0xc05qghdr2xynf5gk695xbpb5hj0wrfcjps34h8cqd249by2dk6",
"depends": ["ALDEx2", "ANCOMBC", "BiocParallel", "DESeq2", "GUniFrac", "MAST", "MGLM", "Maaslin2", "MicrobiomeStat", "NOISeq", "RColorBrewer", "Seurat", "SummarizedExperiment", "TreeSummarizedExperiment", "corncob", "cowplot", "dearseq", "edgeR", "ggdendro", "ggplot2", "ggridges", "limma", "lme4", "maaslin3", "metagenomeSeq", "microbiome", "mixOmics", "phyloseq", "plyr", "reshape2", "tidytext", "zinbwave"],
"broken": true
},
"betr": {
"name": "betr",
"version": "1.26.0",
"sha256": "1rs2xajrac3a4sk88i7zq3v849969iw0k8wmpbc0ihw9m4ljb0sx",
"depends": ["Biobase", "limma", "mvtnorm"],
"broken": true
},
"bgafun": {
"name": "bgafun",
"version": "1.32.0",
"sha256": "1wakjjdcgzl9snsa9i1f7kk0ppwiccxmznd93yawvjk74gqwnkp3",
"depends": ["ade4", "made4", "seqinr"],
"broken": true
},
"bgx": {
"name": "bgx",
"version": "1.36.0",
"sha256": "1x0i4llp6yrfybp7lwqwc7kb1s12dl8a0nwymhjd3fkfv5lslfbx",
"depends": ["Biobase", "affy", "gcrma"],
"broken": true
},
"bigPint": {
"name": "bigPint",
"version": "1.15.0",
"sha256": "1r9gr5f9as09ifagal5k7713h95qjw508cf8ny3j1jmqd24v6xhs",
"depends": ["DelayedArray", "dplyr", "GGally", "ggplot2", "gridExtra", "hexbin", "Hmisc", "htmlwidgets", "plotly", "plyr", "RColorBrewer", "reshape", "shiny", "shinycssloaders", "shinydashboard", "stringr", "SummarizedExperiment", "tidyr"],
"broken": true
},
"bigmemoryExtras": {
"name": "bigmemoryExtras",
"version": "1.14.2",
"sha256": "05ksk3phvh4wc3vgfj5bl1jfxhndia90bkq9s91wfjzcfkrd41q8",
"depends": ["Biobase", "bigmemory"],
"broken": true
},
"biodbExpasy": {
"name": "biodbExpasy",
"version": "1.8.1",
"sha256": "0n5avxhv5131122h18d3r2v9c64i3nb251hmz8hhc6chmk203fmj",
"depends": ["R6", "biodb", "chk", "stringr"],
"broken": true
},
"biodbHmdb": {
"name": "biodbHmdb",
"version": "1.14.0",
"sha256": "0xpc2dygjm8gy7612ggk2kgd599859l0i8qdjzx01vvchckkps5h",
"depends": ["R6", "Rcpp", "biodb", "testthat", "zip"],
"broken": true
},
"biodbKegg": {
"name": "biodbKegg",
"version": "1.10.2",
"sha256": "0rwxbg3ij5rg3agzsxib7f80b05ar40xnql2krl44c3n43yqkwyw",
"depends": ["R6", "biodb", "chk", "lifecycle"],
"broken": true
},
"biodbLipidmaps": {
"name": "biodbLipidmaps",
"version": "1.10.0",
"sha256": "1p181kwy9q8jj4m7flg71pqn7h6865hbwha4n6j2qki830vym6rv",
"depends": ["R6", "biodb", "lifecycle"],
"broken": true
},
"biodbMirbase": {
"name": "biodbMirbase",
"version": "1.5.0",
"sha256": "17clip9l8as9pz390bqgj07jxp1rijis2f5hj53s6vqaqmiyz4il",
"depends": ["biodb", "chk", "R6", "stringr"],
"broken": true
},
"biodbNcbi": {
"name": "biodbNcbi",
"version": "1.12.0",
"sha256": "19f37fgbhb22k27riklbdary3a1ybnm7drapfkss7grizwpa9d0x",
"depends": ["R6", "XML", "biodb", "chk"],
"broken": true
},
"biodbNci": {
"name": "biodbNci",
"version": "1.12.0",
"sha256": "10fyx0mdhllqlykhm3xnv59hw0ham27wgnswapk0a36rr804mfpj",
"depends": ["R6", "Rcpp", "biodb", "chk", "testthat"],
"broken": true
},
"biodbUniprot": {
"name": "biodbUniprot",
"version": "1.14.0",
"sha256": "1m27a7ngn4gwhj37vwg2mq5588q3cp85fcq5fjbjygi7l3d3pwg3",
"depends": ["R6", "biodb"],
"broken": true
},
"biosvd": {
"name": "biosvd",
"version": "2.6.0",
"sha256": "0mjkan7drib9v49dk3rnrkydm1dxfqimk5gk4jm9qv8kdfcjk0zh",
"depends": ["Biobase", "BiocGenerics", "NMF"],
"broken": true
},
"birta": {
"name": "birta",
"version": "1.14.0",
"sha256": "1pszpvmvjp1r0bwj7w9ws0y8xmb3yfmq5gifj9jwvgw2p7y718zr",
"depends": ["Biobase", "MASS", "limma"],
"broken": true
},
"birte": {
"name": "birte",
"version": "1.6.1",
"sha256": "08jkjlkjswz3x4sxw80xr9ck6277ag1gzv5y1dxh7aa6i644w48p",
"depends": ["Biobase", "MASS", "Rcpp", "RcppArmadillo", "glmnet", "limma", "nem"],
"broken": true
},
"blima": {
"name": "blima",
"version": "1.42.0",
"sha256": "0hsgd1zl3i2v4916c7dxlwlpm3affmgpb9s58p9rj1as3nvk6z9l",
"depends": ["Biobase", "BiocGenerics", "Rcpp", "beadarray"],
"broken": true
},
"brainflowprobes": {
"name": "brainflowprobes",
"version": "1.16.0",
"sha256": "06gga72ns7h9c6mdbvbj8afpkyizg7maazriilvaq433h6s1pgqb",
"depends": ["Biostrings", "BSgenome_Hsapiens_UCSC_hg19", "bumphunter", "cowplot", "derfinder", "derfinderPlot", "GenomicRanges", "GenomicState", "ggplot2", "RColorBrewer"],
"broken": true
},
"branchpointer": {
"name": "branchpointer",
"version": "1.34.0",
"sha256": "0n3linwha0lj65m72k7zm2bslxkdkjb1yqgs5ksdxrlziwmfs2nj",
"depends": ["BSgenome_Hsapiens_UCSC_hg38", "Biostrings", "GenomeInfoDb", "GenomicRanges", "IRanges", "S4Vectors", "biomaRt", "caret", "cowplot", "data_table", "gbm", "ggplot2", "kernlab", "plyr", "rtracklayer", "stringr"],
"broken": true
},
"bridge": {
"name": "bridge",
"version": "1.34.0",
"sha256": "08lfbczaj7hkgqfsm060z56anx1yvsfwknzw40gq919k0zm9vfcf",
"depends": ["rama"],
"broken": true
},
"broadSeq": {
"name": "broadSeq",
"version": "1.2.4",
"sha256": "00xqpr915yhimmimbr43010ljdj7fiq613a3yq6haxvkqjpv83ri",
"depends": ["BiocStyle", "DELocal", "DESeq2", "EBSeq", "NOISeq", "SummarizedExperiment", "clusterProfiler", "dplyr", "edgeR", "forcats", "genefilter", "ggplot2", "ggplotify", "ggpubr", "pheatmap", "plyr", "purrr", "sechm", "stringr"],
"broken": true
},
"caOmicsV": {
"name": "caOmicsV",
"version": "1.0.0",
"sha256": "0162h17szpr98g4lgz5nypcrslk4103hdn5qdxfxv6frssn9l9g3",
"depends": ["bc3net", "igraph"],
"broken": true
},
"ccmap": {
"name": "ccmap",
"version": "1.34.0",
"sha256": "1khc7n1qpm7f4mpqy4qa74v03q581knig30hbvcd0a5x8gk8bvj3",
"depends": ["AnnotationDbi", "BiocManager", "ccdata", "data_table", "doParallel", "foreach", "lsa", "xgboost"],
"broken": true
},
"cellGrowth": {
"name": "cellGrowth",
"version": "1.14.0",
"sha256": "0d40kll2rkzijyk0d0xb9rzyck5r0hkybv0j1ba72g9kk2mdmz7z",
"depends": ["lattice", "locfit"],
"broken": true
},
"cellHTS": {
"name": "cellHTS",
"version": "1.40.2",
"sha256": "1cdzrmqr3fwxylc3m7g72bmc5iml266355i0mfdavp2q9y28kc85",
"depends": ["Biobase", "RColorBrewer", "genefilter", "prada"],
"broken": true
},
"cellHTS2": {
"name": "cellHTS2",
"version": "2.34.1",
"sha256": "068lqpxhy04fhpma8cbd79jwg0cifvg8qhav5a4p22dgmalvajw1",
"depends": ["Biobase", "Category", "GSEABase", "RColorBrewer", "genefilter", "hwriter", "locfit", "prada", "splots", "vsn"],
"broken": true
},
"cellTree": {
"name": "cellTree",
"version": "1.27.0",
"sha256": "0yfr59fcbdj03ikkpvw1qcxqrjbkz7nkfmb5m1xr4k9qs39bq9sb",
"depends": ["gplots", "igraph", "maptpx", "slam", "topGO", "topicmodels", "xtable"],
"broken": true
},
"charm": {
"name": "charm",
"version": "2.16.1",
"sha256": "00bvgpj705v9jb43skj5iljjf131dnz90n2rc1yww6s2kh4qqppm",
"depends": ["BSgenome", "Biobase", "Biostrings", "IRanges", "RColorBrewer", "SQN", "ff", "fields", "genefilter", "gtools", "limma", "nor1mix", "oligo", "oligoClasses", "preprocessCore", "siggenes", "sva"],
"broken": true
},
"chevreulShiny": {
"name": "chevreulShiny",
"version": "1.0.0",
"sha256": "0cl1wx66wk2l206yjvhnjmdacn3vbci6gzxii5djqiisr8zp42ml",
"depends": ["ComplexHeatmap", "DBI", "DT", "DataEditR", "EnhancedVolcano", "RSQLite", "S4Vectors", "SingleCellExperiment", "alabaster_base", "chevreulPlot", "chevreulProcess", "clustree", "dplyr", "fs", "future", "ggplot2", "ggplotify", "patchwork", "plotly", "purrr", "rappdirs", "readr", "scales", "shiny", "shinyFiles", "shinyWidgets", "shinydashboard", "shinyhelper", "shinyjs", "stringr", "tibble", "tidyr", "tidyselect", "waiter", "wiggleplotr"],
"broken": true
},
"chimera": {
"name": "chimera",
"version": "1.12.0",
"sha256": "11arbg6c76rx4zyylp6ga8ygx8890h0pkg4ciwhy4xc8x1smmq7r",
"depends": ["AnnotationDbi", "BSgenome_Hsapiens_UCSC_hg19", "Biobase", "GenomicAlignments", "GenomicRanges", "Homo_sapiens", "Rsamtools", "TxDb_Hsapiens_UCSC_hg19_knownGene"],
"broken": true
},
"chroGPS": {
"name": "chroGPS",
"version": "1.14.0",
"sha256": "0i0hrf38sjsay6r6zh69cy6xki17cjw427szq4h7770jlphiq8n1",
"depends": ["Biobase", "ICSNP", "IRanges", "MASS", "changepoint", "cluster"],
"broken": true
},
"chromstaR": {
"name": "chromstaR",
"version": "1.32.0",
"sha256": "071aipwk1awr71hvzflps49dzp83p12zm1pbyx4l8d2v3wbj0dlz",
"depends": ["BiocGenerics", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "bamsignals", "chromstaRData", "doParallel", "foreach", "ggplot2", "mvtnorm", "reshape2"],
"broken": true
},
"chromswitch": {
"name": "chromswitch",
"version": "1.22.0",
"sha256": "007wa8980hkpja33ph3b3fjsjrf91cnwc0a7y4014k8xxmmgfdh7",
"depends": ["Biobase", "BiocParallel", "cluster", "dplyr", "GenomicRanges", "gplots", "IRanges", "lazyeval", "magrittr", "matrixStats", "NMF", "rtracklayer", "S4Vectors", "tidyr"],
"broken": true
},
"cisPath": {
"name": "cisPath",
"version": "1.47.0",
"sha256": "0q9fk47jwsbslyqjx6b4qr65xvxappr63xkvm2a6458r3hxaf41y",
"depends": [],
"broken": true
},
"clonotypeR": {
"name": "clonotypeR",
"version": "1.8.0",
"sha256": "1fj00hrxijkn002ixa7kn07jq94mlsgz99xr3sapzg0jqacgp9q0",
"depends": [],
"broken": true
},
"coMET": {
"name": "coMET",
"version": "1.2.1",
"sha256": "017sjx9wamyg6jglnbw1ynkbnp9idj9142jhkqvy8xji6kqh5xpk",
"depends": ["GenomicRanges", "Gviz", "IRanges", "S4Vectors", "biomaRt", "corrplot", "ggbio", "ggplot2", "gridExtra", "hash", "psych", "rtracklayer", "trackViewer"],
"broken": true
},
"coRNAi": {
"name": "coRNAi",
"version": "1.20.0",
"sha256": "05jv85jbb5lz0x0cmg52sn6gnsscyq939yyk6ll9061bx51as7cv",
"depends": ["MASS", "cellHTS2", "gplots", "lattice", "limma", "locfit"],
"broken": true
},
"cobindR": {
"name": "cobindR",
"version": "1.8.0",
"sha256": "06nckxm5hz6c336p5fvfmccfzdri68qcmagkyjg7nnfsyl66fri1",
"depends": ["BSgenome", "BiocGenerics", "Biostrings", "IRanges", "biomaRt", "gmp", "gplots", "mclust", "seqinr", "yaml"],
"broken": true
},
"coexnet": {
"name": "coexnet",
"version": "1.19.1",
"sha256": "0zw8a8pqmajqnv5n6i7fn7krwax81sd4c6wqm4zr61fy2blqzv3h",
"depends": ["acde", "affy", "Biobase", "GEOquery", "igraph", "limma", "minet", "rmarkdown", "siggenes", "STRINGdb", "SummarizedExperiment", "vsn"],
"broken": true
},
"comapr": {
"name": "comapr",
"version": "1.12.0",
"sha256": "0ggks950kr5c8x4l0479lh882r4svxagaq2y65hv26x23c03hzkx",
"depends": ["BiocParallel", "GenomeInfoDb", "GenomicRanges", "Gviz", "IRanges", "Matrix", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "circlize", "dplyr", "foreach", "ggplot2", "gridExtra", "plotly", "plyr", "reshape2", "rlang", "scales", "tidyr"],
"broken": true
},
"compartmap": {
"name": "compartmap",
"version": "1.18.0",
"sha256": "0lvgwnp5cgn96m9y4snpczfbfs72lxbaa36lnmwa7j07jy4s9108",
"depends": ["BiocSingular", "DelayedArray", "DelayedMatrixStats", "GenomicRanges", "ggplot2", "HDF5Array", "Matrix", "RaggedExperiment", "reshape2", "RMTstat", "rtracklayer", "scales", "SummarizedExperiment"],
"broken": true
},
"conclus": {
"name": "conclus",
"version": "1.5.0",
"sha256": "09rk73sxqxsy0zq07n67jxqbzb1rlxlj0phg6987szdjwxmag6jc",
"depends": ["AnnotationDbi", "Biobase", "BiocFileCache", "biomaRt", "clusterProfiler", "dbscan", "doParallel", "dplyr", "factoextra", "foreach", "fpc", "GEOquery", "ggplot2", "gridExtra", "org_Hs_eg_db", "org_Mm_eg_db", "pheatmap", "rlang", "Rtsne", "scales", "scater", "scran", "SingleCellExperiment", "stringr", "SummarizedExperiment"],
"broken": true
},
"contiBAIT": {
"name": "contiBAIT",
"version": "1.30.0",
"sha256": "1asyfx0mbg0pli2g533xmlppfw0s0f1y4vf2rfrnai4chsh1rh0k",
"depends": ["BH", "BiocGenerics", "BiocParallel", "clue", "cluster", "colorspace", "data_table", "diagram", "DNAcopy", "exomeCopy", "GenomicAlignments", "GenomicFiles", "GenomicRanges", "ggplot2", "gplots", "gtools", "IRanges", "Rcpp", "reshape2", "Rsamtools", "rtracklayer", "S4Vectors", "TSP"],
"broken": true
},
"copynumber": {
"name": "copynumber",
"version": "1.10.0",
"sha256": "1g03cy5inbhzhl5hj8vma34xm8lixilhalavjysp93bwg4dfskv6",
"depends": ["BiocGenerics", "GenomicRanges", "IRanges", "S4Vectors"],
"broken": true
},
"crisprseekplus": {
"name": "crisprseekplus",
"version": "1.26.0",
"sha256": "1ccz944jwlcnflrdh1aamfc5b03n6pys65b13f049f0x214vqg68",
"depends": ["AnnotationDbi", "BiocManager", "BSgenome", "CRISPRseek", "DT", "GenomicFeatures", "GenomicRanges", "GUIDEseq", "hash", "shiny", "shinyjs"],
"broken": true
},
"crossmeta": {
"name": "crossmeta",
"version": "1.30.0",
"sha256": "1ghgfby1rl3phldyipli550f0i289yanb0v4nzn5l1xnpkxaj6fa",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "BiocManager", "DBI", "DT", "GEOquery", "RCurl", "RSQLite", "XML", "affxparser", "affy", "data_table", "edgeR", "fdrtool", "limma", "matrixStats", "metaMA", "miniUI", "oligo", "reader", "readxl", "shiny", "shinyBS", "shinyWidgets", "shinyjs", "shinypanel", "stringr", "sva", "tibble"],
"broken": true
},
"ctgGEM": {
"name": "ctgGEM",
"version": "1.7.0",
"sha256": "0hmapz96r024r3bws1wf0spd0i81viyma859y9nn93jrwxscrcdb",
"depends": ["Biobase", "BiocGenerics", "igraph", "Matrix", "monocle", "sincell", "SummarizedExperiment", "TSCAN"],
"broken": true
},
"cummeRbund": {
"name": "cummeRbund",
"version": "2.50.0",
"sha256": "1i1zcrfizp4ix0bgx3gjbd4y4hj7dfs15j4ssh87kkx61y7x6yl8",
"depends": ["Biobase", "BiocGenerics", "Gviz", "RSQLite", "S4Vectors", "fastcluster", "ggplot2", "plyr", "reshape2", "rtracklayer"],
"broken": true
},
"customProDB": {
"name": "customProDB",
"version": "1.48.0",
"sha256": "1ixpq5fasq2n2f1rbwi1icnb6v96hakkv7kqsvzmp2lraxqh5lv0",
"depends": ["AhoCorasickTrie", "AnnotationDbi", "Biostrings", "DBI", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "RCurl", "RSQLite", "Rsamtools", "S4Vectors", "VariantAnnotation", "biomaRt", "plyr", "rtracklayer", "stringr", "txdbmaker"],
"broken": true
},
"cytofQC": {
"name": "cytofQC",
"version": "1.8.0",
"sha256": "13lcf0bldkccpgz5673cn2n64wqmwx98qpb9vzdlbin981pxr5ny",
"depends": ["CATALYST", "EZtune", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "e1071", "flowCore", "gbm", "ggplot2", "hrbrthemes", "matrixStats", "randomForest", "rmarkdown", "ssc"],
"broken": true
},
"cytofkit": {
"name": "cytofkit",
"version": "1.2.4",
"sha256": "1pgaw18m4z3az3b0d5d2wlvfq0ha80k5bc0vyjd9grlbwcpvs6nr",
"depends": ["Biobase", "RANN", "Rcpp", "Rtsne", "VGAM", "doParallel", "e1071", "flowCore", "ggplot2", "gplots", "igraph", "pdist", "plyr", "reshape", "reshape2", "shiny", "vegan"],
"broken": true
},
"dandelionR": {
"name": "dandelionR",
"version": "1.0.2",
"sha256": "0m8p003mgf03n69z0bcbid2insskg04vhhrvrppsciqcc9a4rbb4",
"depends": ["BiocGenerics", "MASS", "Matrix", "RANN", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "bluster", "destiny", "igraph", "miloR", "purrr", "rlang", "spam", "uwot"],
"broken": true
},
"dasper": {
"name": "dasper",
"version": "1.9.0",
"sha256": "095ldl40cay5n8lkp8y69lbmflhnbwm1b075s4zgpagn81awp0cn",
"depends": ["basilisk", "BiocFileCache", "BiocParallel", "data_table", "dplyr", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "ggplot2", "ggpubr", "ggrepel", "IRanges", "magrittr", "megadepth", "plyranges", "readr", "reticulate", "rtracklayer", "S4Vectors", "stringr", "SummarizedExperiment", "tidyr"],
"broken": true
},
"dce": {
"name": "dce",
"version": "1.13.0",
"sha256": "02gnlskfgn38fcf5mchp6ippcd2rj4cl4w7r08igaqyl02zy2x80",
"depends": ["MASS", "Matrix", "Rgraphviz", "assertthat", "dplyr", "edgeR", "epiNEM", "expm", "ggplot2", "ggraph", "glm2", "glue", "graph", "graphite", "harmonicmeanp", "igraph", "logger", "magrittr", "metap", "mnem", "naturalsort", "org_Hs_eg_db", "pcalg", "ppcor", "purrr", "reshape2", "rlang", "shadowtext", "tidygraph", "tidyverse"],
"broken": true
},
"ddgraph": {
"name": "ddgraph",
"version": "1.14.0",
"sha256": "0nmrz9cy7l31vym3fcc9m3dmgmbnd5r91p3fxpziaarphi27zszl",
"depends": ["MASS", "RColorBrewer", "Rcpp", "bnlearn", "graph", "gtools", "pcalg", "plotrix"],
"broken": true
},
"debCAM": {
"name": "debCAM",
"version": "1.26.0",
"sha256": "1sh8vbhgrkk1xfk139jxi88s2z70pnr4ji2pnb2gb3s5013zrhk8",
"depends": ["Biobase", "BiocParallel", "NMF", "SummarizedExperiment", "apcluster", "corpcor", "geometry", "nnls", "pcaPP", "rJava"],
"broken": true
},
"deco": {
"name": "deco",
"version": "1.13.0",
"sha256": "0d4abif3v62cbas6hl7pfw8q8jihh7nsra76k9cm6kz54qw4fbnw",
"depends": ["ade4", "AnnotationDbi", "Biobase", "BiocParallel", "BiocStyle", "cluster", "foreign", "gdata", "ggplot2", "gplots", "gridExtra", "limma", "locfit", "made4", "RColorBrewer", "reshape2", "scatterplot3d", "sfsmisc", "SummarizedExperiment"],
"broken": true
},
"destiny": {
"name": "destiny",
"version": "3.22.0",
"sha256": "01l01b6k55ifhppsp83scjf3f168r62xigz73s718ik8qbvirgqa",
"depends": ["Biobase", "BiocGenerics", "Matrix", "RSpectra", "Rcpp", "RcppEigen", "RcppHNSW", "SingleCellExperiment", "SummarizedExperiment", "VIM", "ggplot2", "ggplot_multistats", "ggthemes", "irlba", "knn_covertree", "pcaMethods", "proxy", "rlang", "scales", "scatterplot3d", "smoother", "tidyr", "tidyselect"],
"broken": true
},
"dexus": {
"name": "dexus",
"version": "1.10.0",
"sha256": "0hc28mkmnr37fmw6xw2cywla946gm0cxa8k4hi32d12cm9c24xqx",
"depends": ["BiocGenerics"],
"broken": true
},
"diffloop": {
"name": "diffloop",
"version": "1.24.0",
"sha256": "0v0jg9y08xzw775x2lm82ig1ag4wjf4z2l6a66zmk6qbn59dwj1g",
"depends": ["Biobase", "biomaRt", "data_table", "dplyr", "edgeR", "foreach", "GenomeInfoDb", "GenomicRanges", "ggplot2", "IRanges", "limma", "locfit", "matrixStats", "pbapply", "plyr", "readr", "reshape2", "rtracklayer", "S4Vectors", "statmod", "Sushi"],
"broken": true
},
"domainsignatures": {
"name": "domainsignatures",
"version": "1.30.0",
"sha256": "0rr5d57cjkp46qp2908vh3wyfdgiyaikdgbcxipizcv5a00nq0rx",
"depends": ["AnnotationDbi", "KEGG_db", "biomaRt", "prada"],
"broken": true
},
"dpeak": {
"name": "dpeak",
"version": "1.12.0",
"sha256": "1fx2rrcqmjckk5kk3mfa56b1393b2c8sf566q95d8zmlsvkl03w5",
"depends": ["BSgenome", "IRanges", "MASS", "Rcpp"],
"broken": true
},
"drawProteins": {
"name": "drawProteins",
"version": "1.28.0",
"sha256": "06fv2fhka123kj9rc2h0z07ym30wxk24fq8v0pzmf8gfyg4ywgfj",
"depends": ["dplyr", "ggplot2", "httr", "readr", "tidyr"],
"broken": true
},
"dualKS": {
"name": "dualKS",
"version": "1.30.0",
"sha256": "02j9l73brxa4fgsp9cbd3w7dxllvj744rby21dkfnw2c42rcxpvz",
"depends": ["Biobase", "affy"],
"broken": true
},
"eegc": {
"name": "eegc",
"version": "1.26.0",
"sha256": "0m67zjsq2xzk292rp0hdlj8lbfgci2dsdb5hmn4b591fqawwsqbb",
"depends": ["AnnotationDbi", "clusterProfiler", "DESeq2", "DOSE", "edgeR", "ggplot2", "gplots", "igraph", "limma", "org_Hs_eg_db", "org_Mm_eg_db", "pheatmap", "R_utils", "S4Vectors", "sna", "wordcloud"],
"broken": true
},
"eisa": {
"name": "eisa",
"version": "1.22.0",
"sha256": "0p3s6z7s4d165h4w5g1h273626h5j255c0hyjv5dlrdhr4ign7v6",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "Category", "DBI", "genefilter", "isa2"],
"broken": true
},
"enrichTF": {
"name": "enrichTF",
"version": "1.18.0",
"sha256": "0lhmlxw7mpb76w2agm25v5qzxgf28wfw2xc0fnlqn2sbbfj295y9",
"depends": ["BiocGenerics", "BSgenome", "clusterProfiler", "GenomeInfoDb", "GenomicRanges", "ggplot2", "ggpubr", "heatmap3", "IRanges", "JASPAR2018", "magrittr", "motifmatchr", "pipeFrame", "R_utils", "rmarkdown", "rtracklayer", "S4Vectors", "TFBSTools"],
"broken": true
},
"ensemblVEP": {
"name": "ensemblVEP",
"version": "1.10.3",
"sha256": "1q9bzs9zqk2xv10jnq7571f8wgyi2l6zk6sgd4sja6fw82lrnmsy",
"depends": ["BiocGenerics", "Biostrings", "GenomicRanges", "VariantAnnotation"],
"broken": true
},
"epigenomix": {
"name": "epigenomix",
"version": "1.48.1",
"sha256": "05wvdfrgj2hpj8qm83k6jfbl4794zcafsh1g0d9bzd882f1n43bs",
"depends": ["Biobase", "BiocGenerics", "GenomeInfoDb", "GenomicRanges", "IRanges", "MCMCpack", "Rsamtools", "S4Vectors", "SummarizedExperiment", "beadarray"],
"broken": true
},
"epihet": {
"name": "epihet",
"version": "1.13.0",
"sha256": "1p5sgb438yj6h0fv0v17dhz1pl32vai5zcbmgpgagrd5829a6a7r",
"depends": ["data_table", "doParallel", "foreach", "GenomicRanges", "ggplot2", "igraph", "IRanges", "pheatmap", "qvalue", "ReactomePA", "Rtsne", "S4Vectors", "WGCNA"],
"broken": true
},
"erma": {
"name": "erma",
"version": "1.24.1",
"sha256": "1s3b2a0iv3rl3sxq1sbqscq2h2gjz4d3vsg9phhnbk1xdhbhqi4d",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "BiocParallel", "GenomeInfoDb", "GenomicFiles", "GenomicRanges", "Homo_sapiens", "IRanges", "S4Vectors", "SummarizedExperiment", "ggplot2", "rtracklayer", "shiny"],
"broken": true
},
"exomeCopy": {
"name": "exomeCopy",
"version": "1.16.0",
"sha256": "09awyyfgs0k639nqrcrbq1k875qlyac1146w4ay6nxgijqy7iv82",
"depends": ["GenomeInfoDb", "GenomicRanges", "IRanges", "Rsamtools"],
"broken": true
},
"exomePeak": {
"name": "exomePeak",
"version": "2.2.2",
"sha256": "03xj0h1cgxzbp2fk830l771jmmcll1bq81xips8hjgng3ywz5m1a",
"depends": ["GenomicAlignments", "GenomicFeatures", "Rsamtools", "rtracklayer"],
"broken": true
},
"exomePeak2": {
"name": "exomePeak2",
"version": "1.14.3",
"sha256": "1hvz18hlvljbv0cmdlxzvsl2ysb5m0c5qq2y8jxzsby3zxlqplph",
"depends": ["BiocGenerics", "BiocParallel", "Biostrings", "BSgenome", "DESeq2", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "ggplot2", "IRanges", "magrittr", "mclust", "Rsamtools", "rtracklayer", "S4Vectors", "speedglm", "SummarizedExperiment"],
"broken": true
},
"explorase": {
"name": "explorase",
"version": "1.34.0",
"sha256": "108p864qq8zh4x7p765ygrdkj4r0vm3s2fmi3scswkhcv3vjcjg3",
"depends": ["limma"],
"broken": true
},
"facopy": {
"name": "facopy",
"version": "1.4.1",
"sha256": "07ggz86c48rz8asqvfglrvsimnzh3ii43kzpm8ji6sd43i141650",
"depends": ["DOSE", "FactoMineR", "GO_db", "GOstats", "IRanges", "MASS", "Rgraphviz", "annotate", "coin", "data_table", "facopy_annot", "ggplot2", "graphite", "gridExtra", "igraph", "nnet", "reshape2", "scales"],
"broken": true
},
"factR": {
"name": "factR",
"version": "1.10.0",
"sha256": "131rmjl1awazpapmdag3kcjxjgb5gdxh2xvrvpvzhw45r4nd69v0",
"depends": ["BiocGenerics", "BiocParallel", "Biostrings", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "RCurl", "S4Vectors", "XML", "crayon", "data_table", "dplyr", "drawProteins", "ggplot2", "pbapply", "purrr", "rlang", "rtracklayer", "stringr", "tibble", "tidyr", "wiggleplotr"],
"broken": true
},
"famat": {
"name": "famat",
"version": "1.18.0",
"sha256": "00fzbqa065z2si0yq4gvici4vfxwa8dwfyx077kc9d7a4z99b2wa",
"depends": ["BiasedUrn", "DT", "GO_db", "KEGGREST", "clusterProfiler", "dplyr", "gprofiler2", "magrittr", "mgcv", "ontologyIndex", "org_Hs_eg_db", "plotly", "rWikiPathways", "reactome_db", "shiny", "shinyBS", "shinydashboard", "stringr", "tidyr"],
"broken": true
},
"farms": {
"name": "farms",
"version": "1.22.0",
"sha256": "1jmx5rajm6fkhx5gfpwh8nsqw0plhfzy1bibvkdf83arxjjr6s59",
"depends": ["Biobase", "MASS", "affy"],
"broken": true
},
"fcoex": {
"name": "fcoex",
"version": "1.13.0",
"sha256": "085r5s5sqrj2701zk5kv3818ksxvxzd76lknzi6bk1svw4d3lsyc",
"depends": ["clusterProfiler", "data_table", "dplyr", "FCBF", "ggplot2", "ggrepel", "igraph", "intergraph", "Matrix", "network", "pathwayPCA", "progress", "scales", "SingleCellExperiment", "sna", "stringr"],
"broken": true
},
"flipflop": {
"name": "flipflop",
"version": "1.8.2",
"sha256": "1v4ihrmw0vphz0k0f37qy5k8zwa5g5cnj4agccjl4mqbvwiq4awh",
"depends": ["GenomicRanges", "IRanges", "Matrix"],
"broken": true
},
"flowCL": {
"name": "flowCL",
"version": "1.8.0",
"sha256": "064946w944gw7l0hizw974i21cahzvfj1xza8f7ay9rx2baz28sh",
"depends": ["Rgraphviz"],
"broken": true
},
"flowFit": {
"name": "flowFit",
"version": "1.8.0",
"sha256": "1fja1d5irh71a3rqdsbw5sb14ss2xmird6vxcps96r6s6rz2bra3",
"depends": ["flowCore", "flowViz", "gplots", "kza", "minpack_lm"],
"broken": true
},
"flowMap": {
"name": "flowMap",
"version": "1.8.0",
"sha256": "0rkdspl9lnasc8axlsx076g14pkgwrlz9nbxy0f1z67w991d823p",
"depends": ["Matrix", "abind", "ade4", "doParallel", "reshape2", "scales"],
"broken": true
},
"flowQ": {
"name": "flowQ",
"version": "1.30.0",
"sha256": "1yz0w0bpv98l319y8dw82qaykg6w70sxpzmhxdckwdqjpixq5sf5",
"depends": ["BiocGenerics", "IRanges", "RColorBrewer", "bioDist", "flowCore", "flowViz", "geneplotter", "lattice", "latticeExtra", "mvoutlier", "outliers", "parody"],
"broken": true
},
"flowQB": {
"name": "flowQB",
"version": "1.14.0",
"sha256": "1swsdqra8w8z27p2mv1q37ydak7rjifxm78h5x6mhv1vfq4faz12",
"depends": ["Biobase", "MASS", "flowCore"],
"broken": true
},
"flowType": {
"name": "flowType",
"version": "2.8.2",
"sha256": "0q7bk8pn71zyzc1m16rqimlyldnfj178k64vg0kw4yiwdjxlgdr4",
"depends": ["BH", "Biobase", "Rcpp", "flowClust", "flowCore", "flowMeans", "flowMerge", "rrcov", "sfsmisc"],
"broken": true
},
"flowUtils": {
"name": "flowUtils",
"version": "1.34.0",
"sha256": "0qba66cfsy8facvdpnl5jf71xwaqs3w6j2z0ph7c39zyng0nibwp",
"depends": ["Biobase", "RUnit", "XML", "corpcor", "flowCore", "flowViz", "graph"],
"broken": true
},
"focalCall": {
"name": "focalCall",
"version": "1.4.0",
"sha256": "1dqk0lda24lkhfsid15c6n121s63zbk6658za5qxqkxdd82z7axf",
"depends": ["CGHcall"],
"broken": true
},
"gCMAP": {
"name": "gCMAP",
"version": "1.14.0",
"sha256": "09dcaq0763kb399wh232n6r1s8qkj0c4zcmpjp6cz08w6n7lchgx",
"depends": ["AnnotationDbi", "Biobase", "Category", "DESeq", "GSEABase", "GSEAlm", "Matrix", "annotate", "genefilter", "limma"],
"broken": true
},
"gCMAPWeb": {
"name": "gCMAPWeb",
"version": "1.10.0",
"sha256": "00qx90gycqqca8b3brkl0bkckn7saqz9z38vinhjxlyaanc9v6ml",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "GSEABase", "Rook", "annotate", "brew", "gCMAP", "hwriter", "yaml"],
"broken": true
},
"gINTomics": {
"name": "gINTomics",
"version": "1.4.0",
"sha256": "04b1ksazr3l1b1k5rylmswzlfgz5xixgds2n10a1yiqwbbcjkn2p",
"depends": ["AnnotationDbi", "BiocGenerics", "BiocParallel", "ComplexHeatmap", "DT", "GenomicFeatures", "GenomicRanges", "InteractiveComplexHeatmap", "MASS", "MethylMix", "MultiAssayExperiment", "OmnipathR", "RColorBrewer", "ReactomePA", "SummarizedExperiment", "TxDb_Hsapiens_UCSC_hg38_knownGene", "TxDb_Mmusculus_UCSC_mm10_knownGene", "biomaRt", "callr", "circlize", "clusterProfiler", "dplyr", "edgeR", "ggplot2", "ggridges", "ggtree", "ggvenn", "gtools", "limma", "org_Hs_eg_db", "org_Mm_eg_db", "plotly", "plyr", "randomForest", "reshape2", "shiny", "shiny_gosling", "shinydashboard", "shinyjs", "stringi", "stringr", "visNetwork"],
"broken": true
},
"gQTLBase": {
"name": "gQTLBase",
"version": "1.2.1",
"sha256": "1a1ndjjp2zn1lsfahpvi3xhkdgwl5wk0bdm7kc92aidq50a2db42",
"depends": ["BBmisc", "BatchJobs", "BiocGenerics", "GenomicFiles", "GenomicRanges", "S4Vectors", "bit", "doParallel", "ff", "foreach", "rtracklayer"],
"broken": true
},
"gQTLstats": {
"name": "gQTLstats",
"version": "1.2.0",
"sha256": "1cwri36z85zyyr48dkkl7qkgbx9fpv7y38mbbm470adc7ac56zbv",
"depends": ["AnnotationDbi", "BatchJobs", "Biobase", "BiocGenerics", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment", "VariantAnnotation", "doParallel", "dplyr", "foreach", "gQTLBase", "gam", "ggplot2", "limma", "reshape2", "snpStats"],
"broken": true
},
"gaggle": {
"name": "gaggle",
"version": "1.38.0",
"sha256": "0bl60nca27rkij061h6g16ddlkq29rb1wh5pr2hz87y74pmb8m2w",
"depends": ["RUnit", "graph", "rJava"],
"broken": true
},
"gaia": {
"name": "gaia",
"version": "2.14.0",
"sha256": "099imzsa7pghp7qbxjjnfrqc8zkn25wm5xj9jn40m9as11zxdrsx",
"depends": [],
"broken": true
},
"gaucho": {
"name": "gaucho",
"version": "1.6.0",
"sha256": "1c1aaidhdv9rr2v3q6832q0ajc3g7l4gfx1rhf27kv4pn1j5s23s",
"depends": ["GA", "Rgraphviz", "graph", "png"],
"broken": true
},
"geecc": {
"name": "geecc",
"version": "1.4.0",
"sha256": "00dkp4ldnpadvw6fdva0gg0m843j7i667r0i33c9dsrjfc7k7z8q",
"depends": ["MASS", "gplots"],
"broken": true
},
"genbankr": {
"name": "genbankr",
"version": "1.27.0",
"sha256": "0fv87cf2y10ijlb0g1x9g9wh95qyljqb1c7k1ihbnjcg36xkh8lc",
"depends": ["Biobase", "BiocGenerics", "Biostrings", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "rtracklayer", "S4Vectors", "VariantAnnotation"],
"broken": true
},
"genoCN": {
"name": "genoCN",
"version": "1.59.0",
"sha256": "1fyyq6759p7pz8ajgkn08clpvygm8b25jlf8m3sgrvw62kwcilxl",
"depends": [],
"broken": true
},
"genoset": {
"name": "genoset",
"version": "1.24.0",
"sha256": "0xxh23sdb5qjfh97a2psp70zb54zx40x8501bpp7gzgqbfn1wf7w",
"depends": ["Biobase", "BiocGenerics", "GenomeInfoDb", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment"],
"broken": true
},
"genotypeeval": {
"name": "genotypeeval",
"version": "1.0.0",
"sha256": "1clljhqy57yy0ss9700zfnsgnby3dism8z2682xjhzzprg049cx4",
"depends": ["BiocGenerics", "BiocParallel", "GenomeInfoDb", "GenomicRanges", "IRanges", "VariantAnnotation", "ggplot2", "rtracklayer"],
"broken": true
},
"genphen": {
"name": "genphen",
"version": "1.24.0",
"sha256": "1m60qagcxviix4zjzfhvrwchbjq2clss6mivb8q07bcq369yw1b8",
"depends": ["Biostrings", "doParallel", "e1071", "foreach", "ranger", "Rcpp", "rPref", "rstan"],
"broken": true
},
"gespeR": {
"name": "gespeR",
"version": "1.2.0",
"sha256": "0s8lndwwqkkkiyqzi8xpqz6clzjrkmkkrh2f1ch80hvfj83rb89d",
"depends": ["Biobase", "Matrix", "biomaRt", "cellHTS2", "doParallel", "dplyr", "foreach", "ggplot2", "glmnet", "reshape2"],
"broken": true
},
"girafe": {
"name": "girafe",
"version": "1.60.0",
"sha256": "06cfbmr8y8xi3z3dl92w0ljl6w4px2m9nr28yp71i9yswa39j107",
"depends": ["Biobase", "BiocGenerics", "Biostrings", "IRanges", "Rsamtools", "S4Vectors", "ShortRead", "genomeIntervals", "intervals", "pwalign"],
"broken": true
},
"gpart": {
"name": "gpart",
"version": "1.13.0",
"sha256": "1518wjkaw22ckgpwl6si83bhijvib0r0kgs9s4das41f0ygi92sd",
"depends": ["AnnotationDbi", "biomaRt", "data_table", "GenomicRanges", "Homo_sapiens", "igraph", "IRanges", "OrganismDbi", "Rcpp", "TxDb_Hsapiens_UCSC_hg38_knownGene"],
"broken": true
},
"gprege": {
"name": "gprege",
"version": "1.14.0",
"sha256": "0mc8x8faj8pf8zb3mywjscn2rzs7bc0ws507a32r7zl5j8p9rzag",
"depends": [],
"broken": true
},
"gpuMagic": {
"name": "gpuMagic",
"version": "1.23.0",
"sha256": "0skgw46i3419i1bsinhkl12f1jv5gf2bxjr7j7ml5g7azypq61ha",
"depends": ["BiocGenerics", "Deriv", "DescTools", "Rcpp", "digest", "pryr", "stringr"],
"broken": true
},
"granulator": {
"name": "granulator",
"version": "1.16.0",
"sha256": "0ycwj878nyf8vc131781abvpz5dmyhdprflidw6gz5ywz16l7538",
"depends": ["MASS", "cowplot", "dplyr", "dtangle", "e1071", "epiR", "ggplot2", "ggplotify", "limSolve", "magrittr", "nnls", "pheatmap", "purrr", "rlang", "tibble", "tidyr"],
"broken": true
},
"hca": {
"name": "hca",
"version": "1.16.0",
"sha256": "1b2fj61m9h3h8ccly4y1ishr3ivrszpwc5j8rkkxy43nwmmv1r2p",
"depends": ["BiocFileCache", "DT", "digest", "dplyr", "httr", "jsonlite", "miniUI", "readr", "shiny", "tibble", "tidyr"],
"broken": true
},
"hiAnnotator": {
"name": "hiAnnotator",
"version": "1.42.0",
"sha256": "17c6v1w4lqiafvyfswf1p2wijzihawgazflwcviiq7dvx5qb0k6z",
"depends": ["BSgenome", "GenomicRanges", "dplyr", "foreach", "ggplot2", "iterators", "rtracklayer", "scales"],
"broken": true
},
"hiReadsProcessor": {
"name": "hiReadsProcessor",
"version": "1.44.0",
"sha256": "0xql5p20cqhwb5j13l643lshhrns45n4hg15x8lbk24r2zmb8azi",
"depends": ["BiocGenerics", "BiocParallel", "Biostrings", "GenomicAlignments", "GenomicRanges", "dplyr", "hiAnnotator", "pwalign", "readxl", "sonicLength"],
"broken": true
},
"hipathia": {
"name": "hipathia",
"version": "3.8.0",
"sha256": "0lplbzcxgb1x5y5rqxr2jbl3a5fg7xh26p2i96mx39mmz8xvwnz0",
"depends": ["AnnotationHub", "DelayedArray", "MetBrewer", "MultiAssayExperiment", "S4Vectors", "SummarizedExperiment", "coin", "dplyr", "ggplot2", "ggpubr", "igraph", "limma", "matrixStats", "preprocessCore", "reshape2", "servr", "tibble", "visNetwork"],
"broken": true
},
"htSeqTools": {
"name": "htSeqTools",
"version": "1.16.0",
"sha256": "1bjbagx6s66fiia71n7ljg5rfc2v22bbp2sk718mf1i9i38c58lm",
"depends": ["BSgenome", "Biobase", "BiocGenerics", "GenomeInfoDb", "GenomicRanges", "IRanges", "MASS"],
"broken": true
},
"hypeR": {
"name": "hypeR",
"version": "2.5.0",
"sha256": "1c4ag9k8f91xyz3b57qrykj8kn467fh31lh41xw7vh1w7kwb0vjb",
"depends": ["BiocStyle", "R6", "dplyr", "ggforce", "ggplot2", "htmltools", "httr", "igraph", "kableExtra", "magrittr", "msigdbr", "openxlsx", "purrr", "reactable", "reshape2", "rlang", "rmarkdown", "scales", "shiny", "stringr", "visNetwork"],
"broken": true
},
"iNETgrate": {
"name": "iNETgrate",
"version": "1.6.0",
"sha256": "02862s4wqzmxhyvbk7d854wlp0whsww7g2w2ngwr5s4n1ri190p0",
"depends": ["BiocStyle", "GenomicRanges", "Homo_sapiens", "Pigengene", "Rfast", "SummarizedExperiment", "WGCNA", "caret", "glmnet", "gplots", "igraph", "matrixStats", "minfi", "survival", "tidyr", "tidyselect"],
"broken": true
},
"iPAC": {
"name": "iPAC",
"version": "1.14.0",
"sha256": "1gzxv6jkn7crylklmnvhm86gczmsr80dmw1a7flaisiiy40k128g",
"depends": ["Biostrings", "gdata", "multtest", "scatterplot3d"],
"broken": true
},
"iPath": {
"name": "iPath",
"version": "1.14.0",
"sha256": "0in8gcs669kcp397z5jishf26prgp86f7w86jwbdmi5j232xb9da",
"depends": ["BiocParallel", "Rcpp", "RcppArmadillo", "ggplot2", "ggpubr", "matrixStats", "mclust", "survival", "survminer"],
"broken": true
},
"imageHTS": {
"name": "imageHTS",
"version": "1.20.0",
"sha256": "1dg8cmrnzlv2qm5lf9771fiir5l0cql6pmfmv0l3037wisdgz1jw",
"depends": ["Biobase", "EBImage", "cellHTS2", "e1071", "hwriter", "vsn"],
"broken": true
},
"inSilicoDb": {
"name": "inSilicoDb",
"version": "2.6.0",
"sha256": "1avxm8qm9rblck94v0aq0na70jfl2cyr9xmbbk27n5hgp1cnaizf",
"depends": ["Biobase", "RCurl", "rjson"],
"broken": true
},
"inSilicoMerging": {
"name": "inSilicoMerging",
"version": "1.14.0",
"sha256": "1xiq66b0vjrcxf4nbmk5mmn1dlxbpa879z04f00w3yz1k7rx6782",
"depends": ["Biobase"],
"broken": true
},
"inveRsion": {
"name": "inveRsion",
"version": "1.18.0",
"sha256": "05jwxwjyvkilfmygf16k3d55ma7s1ya7lyxh8v4pd8gql7v3kllq",
"depends": ["haplo_stats"],
"broken": true
},
"iontree": {
"name": "iontree",
"version": "1.16.0",
"sha256": "1pamgkg85qi3iqqws7a3l8lph428alz1dzf08x309njqz8cbzw91",
"depends": ["RSQLite", "XML", "rJava"],
"broken": true
},
"isomiRs": {
"name": "isomiRs",
"version": "1.36.1",
"sha256": "1bcp2d2bc7fglq1kscxz8mdia6g8p80r3syvfrs42rql76hdvlfi",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "DEGreport", "DESeq2", "GGally", "GenomicRanges", "IRanges", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "broom", "cluster", "cowplot", "dplyr", "ggplot2", "gplots", "gridExtra", "gtools", "limma", "readr", "reshape", "rlang", "stringr", "tibble", "tidyr"],
"broken": true
},
"iterClust": {
"name": "iterClust",
"version": "1.24.0",
"sha256": "0k2hcc7g4ynd9jrk8f286y6gwc4bfs4bnfs8qpj2i8zamwdaldng",
"depends": ["Biobase", "cluster"],
"broken": true
},
"iteremoval": {
"name": "iteremoval",
"version": "1.15.1",
"sha256": "0bwl8lzxvf5azwyacv9x16l4kyi8l00xny2s83gp2kng5gyz8602",
"depends": ["GenomicRanges", "ggplot2", "magrittr", "SummarizedExperiment"],
"broken": true
},
"jmosaics": {
"name": "jmosaics",
"version": "1.10.0",
"sha256": "1q67ylrgc2abny2wxgsl1cni225inar1dhim0psrbrf5ik77kgmk",
"depends": ["mosaics"],
"broken": true
},
"joda": {
"name": "joda",
"version": "1.18.0",
"sha256": "0fjbxczwkn8f4p0h8dgi3vfn4qf9a650wmp01q20j7f0jsmmb06x",
"depends": ["RBGL", "bgmm"],
"broken": true
},
"lapmix": {
"name": "lapmix",
"version": "1.72.0",
"sha256": "19bhb7654h8pivsf3qxv518zp02ijbvlhkb4d93nyanns3g7zqas",
"depends": ["Biobase"],
"broken": true
},
"logitT": {
"name": "logitT",
"version": "1.28.0",
"sha256": "1qbimjjl5xv5h30r74bd86dg10djajb01qav6gp95l6f59fx2j1q",
"depends": ["affy"],
"broken": true
},
"lol": {
"name": "lol",
"version": "1.18.0",
"sha256": "0dc3ga7yalzfngh3y33sa4bchhbxgndkls3vdxh4yzcsdvk60i1f",
"depends": ["Matrix", "penalized"],
"broken": true
},
"lute": {
"name": "lute",
"version": "1.4.0",
"sha256": "1f1i083aqhls9xf7hynb1xlk5r9ksm5jzy9l971ikh97jyxfwx22",
"depends": ["Biobase", "BiocGenerics", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "dplyr", "ggplot2", "scran"],
"broken": true
},
"mAPKL": {
"name": "mAPKL",
"version": "1.2.0",
"sha256": "1k1yxxj6371sagiy63fl1dh8d71cqg6gvx8pkjy3ahp1hbh45b6l",
"depends": ["AnnotationDbi", "Biobase", "apcluster", "clusterSim", "e1071", "igraph", "limma", "multtest", "parmigene", "reactome_db"],
"broken": true
},
"mCSEA": {
"name": "mCSEA",
"version": "1.28.0",
"sha256": "0j1yrdl9im2s8xfzb57km43v2613k8h6hq29ypxqm6g4x95nhpqf",
"depends": ["GenomicFeatures", "GenomicRanges", "Gviz", "Homo_sapiens", "IRanges", "S4Vectors", "SummarizedExperiment", "biomaRt", "fgsea", "ggplot2", "limma", "mCSEAdata"],
"broken": true
},
"mQTL_NMR": {
"name": "mQTL.NMR",
"version": "1.4.0",
"sha256": "0flb1lqsq7ldicidag20icnhmds2qr85yrbjsv4h06klggq2vjvg",
"depends": ["MASS", "outliers", "qtl"],
"broken": true
},
"maanova": {
"name": "maanova",
"version": "1.40.0",
"sha256": "112hbyfw18dshshsmbaylwra169w6bbwwqql3d96s0in1fl20mdl",
"depends": ["Biobase"],
"broken": true
},
"macat": {
"name": "macat",
"version": "1.44.1",
"sha256": "061y6a1q7c9r9a01hy6l86wc085f530y7hjw7asx506cf91ifwdk",
"depends": ["Biobase", "annotate"],
"broken": true
},
"maigesPack": {
"name": "maigesPack",
"version": "1.34.0",
"sha256": "08pszyq03f1vjgirq0zcv31m4c0acdbfh622qiw0x0w1gz6plm0g",
"depends": ["convert", "graph", "limma", "marray"],
"broken": true
},
"manta": {
"name": "manta",
"version": "1.16.0",
"sha256": "0j6zll7b1qqdnydg59hywargw6bivry3cx5m2wpj79wn673kib3c",
"depends": ["Hmisc", "caroline", "edgeR"],
"broken": true
},
"mbOmic": {
"name": "mbOmic",
"version": "1.3.0",
"sha256": "079qs5apyqli7h16c6drmhibmc356rnllxks5ddfnnq7hdzmhdbw",
"depends": ["cluster", "clusterSim", "data_table", "doParallel", "igraph", "psych", "visNetwork", "WGCNA"],
"broken": true
},
"mcaGUI": {
"name": "mcaGUI",
"version": "1.18.0",
"sha256": "0rxhs059z0l6lal33m78hkp73k46c2pdy0nn5lxwxr590fglvh0f",
"depends": ["MASS", "OTUbase", "bpca", "foreign", "lattice", "proto", "vegan"],
"broken": true
},
"mdgsa": {
"name": "mdgsa",
"version": "1.2.0",
"sha256": "05lqj7d4464z976w4rvnzpv1abihq1fpxhcl2zyg5izwqpq6ga9r",
"depends": ["AnnotationDbi", "DBI", "GO_db", "KEGG_db", "Matrix", "cluster"],
"broken": true
},
"metaArray": {
"name": "metaArray",
"version": "1.48.0",
"sha256": "1zx9ymjqh851r33jv7fpyy4319fqi2kgjgxxbgpq1xl6cfkglr4h",
"depends": ["Biobase", "MergeMaid"],
"broken": true
},
"metaX": {
"name": "metaX",
"version": "1.0.3",
"sha256": "1v4519spcgvc2kc1cah5gmfjnx09zlam8p8d8m6wkw0ba600vv7b",
"depends": ["BBmisc", "CAMERA", "DiffCorr", "Nozzle_R1", "RColorBrewer", "RCurl", "SSPA", "VennDiagram", "ape", "boot", "bootstrap", "caret", "data_table", "doParallel", "dplyr", "faahKO", "ggplot2", "igraph", "impute", "lattice", "missForest", "pROC", "pcaMethods", "pheatmap", "pls", "plyr", "preprocessCore", "reshape2", "scatterplot3d", "stringr", "vsn", "xcms"],
"broken": true
},
"metabolomicsWorkbenchR": {
"name": "metabolomicsWorkbenchR",
"version": "1.18.0",
"sha256": "1yk4ddcwqi72aq1jr7gj9c862g6fy82i0s7rx8a6y8nfigd1nvqd",
"depends": ["MultiAssayExperiment", "SummarizedExperiment", "data_table", "httr", "jsonlite", "struct"],
"broken": true
},
"metagene": {
"name": "metagene",
"version": "2.2.1",
"sha256": "1l0zfhk4gnm3gvy24igismpb3j3m6vh4mb4q41cfrpkmxn2zlvaq",
"depends": ["BiocParallel", "DBChIP", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "R6", "Rsamtools", "ggplot2", "gplots", "rtracklayer"],
"broken": true
},
"metagenomeFeatures": {
"name": "metagenomeFeatures",
"version": "1.0.0",
"sha256": "1lbb505s976j2jxxi7snhd1yahcs0ca9qnicq12b5jmp3ki1br9k",
"depends": ["Biobase", "Biostrings", "RSQLite", "ShortRead", "dplyr", "lattice", "lazyeval", "magrittr", "stringr"],
"broken": true
},
"metaseqR": {
"name": "metaseqR",
"version": "1.10.0",
"sha256": "1gy5ywrxqwd8lizbj9lk6qck6zwk670j5y2f0ayz6xvkki4vab97",
"depends": ["DESeq", "EDASeq", "NBPSeq", "NOISeq", "baySeq", "biomaRt", "brew", "corrplot", "edgeR", "gplots", "limma", "log4r", "qvalue", "rjson", "vsn"],
"broken": true
},
"metavizr": {
"name": "metavizr",
"version": "1.21.0",
"sha256": "1d88f854sn5m2pklsyvkmq05yzjanxlnkz5gpzban62qq1mpvims",
"depends": ["Biobase", "data_table", "digest", "epivizr", "epivizrData", "epivizrServer", "epivizrStandalone", "GenomeInfoDb", "httr", "metagenomeSeq", "phyloseq", "vegan"],
"broken": true
},
"methVisual": {
"name": "methVisual",
"version": "1.22.0",
"sha256": "1kcqhlv0lmr7wlkxjl9qqv2676pwna3i4w5xpm4inwgcb892zgjm",
"depends": ["Biostrings", "IRanges", "ca", "gridBase", "gsubfn", "plotrix", "sqldf"],
"broken": true
},
"methyAnalysis": {
"name": "methyAnalysis",
"version": "1.12.2",
"sha256": "0m4qx7q1zm3g4m8kwjz7nvf93891bmbvac0n8wpgniap669af0yk",
"depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "Gviz", "IRanges", "VariantAnnotation", "annotate", "biomaRt", "genefilter", "genoset", "lumi", "methylumi", "org_Hs_eg_db", "rtracklayer"],
"broken": true
},
"mfa": {
"name": "mfa",
"version": "1.30.0",
"sha256": "0zgwf9sxgn0xb103f94zkd96264fjb7cshbwmbardlz74wvrjd87",
"depends": ["Biobase", "MCMCglmm", "MCMCpack", "Rcpp", "coda", "dplyr", "ggmcmc", "ggplot2", "magrittr", "tibble"],
"broken": true
},
"miRmine": {
"name": "miRmine",
"version": "1.22.0",
"sha256": "1d0ni3lavpiv2qzwlmrsjym75cip3i9q1bg9rwa04h61rz2smylg",
"depends": ["SummarizedExperiment"],
"broken": true
},
"microSTASIS": {
"name": "microSTASIS",
"version": "1.8.0",
"sha256": "1ixmd0srjndx43zsl183qzc1r4mhvm6cm2h5yshvijj4lhhgmfli",
"depends": ["BiocParallel", "TreeSummarizedExperiment", "ggplot2", "ggside", "rlang", "stringr"],
"broken": true
},
"microbiomeMarker": {
"name": "microbiomeMarker",
"version": "1.12.2",
"sha256": "0fkm2sqqsaa8kkdyp0j3zwx8lijgkgk4s45sir3s37an9yai2bp4",
"depends": ["ALDEx2", "ANCOMBC", "Biobase", "BiocGenerics", "BiocParallel", "Biostrings", "ComplexHeatmap", "DESeq2", "IRanges", "MASS", "S4Vectors", "biomformat", "caret", "coin", "dplyr", "edgeR", "ggplot2", "ggsignif", "ggtree", "limma", "magrittr", "metagenomeSeq", "multtest", "pROC", "patchwork", "phyloseq", "plotROC", "purrr", "rlang", "tibble", "tidyr", "tidytree", "vegan", "yaml"],
"broken": true
},
"mitoODE": {
"name": "mitoODE",
"version": "1.8.0",
"sha256": "1rbxppzwmlrfyzcsa5b0biqm79qyv9662dh16zzp3frz56325kzy",
"depends": ["KernSmooth", "MASS", "minpack_lm", "mitoODEdata"],
"broken": true
},
"mmnet": {
"name": "mmnet",
"version": "1.8.1",
"sha256": "0ppcy11xnn593xig8gwz79vsbkdi3f5aai58zdhr59w52y2dafia",
"depends": ["Biobase", "KEGGREST", "Matrix", "RCurl", "RJSONIO", "XML", "flexmix", "ggplot2", "igraph", "plyr", "reshape2", "stringr"],
"broken": true
},
"motifRG": {
"name": "motifRG",
"version": "1.14.0",
"sha256": "1v9zm5629k2lcqbbgw8bwflvbircyxkfavbkvmbd212kgwcng8vn",
"depends": ["BSgenome", "BSgenome_Hsapiens_UCSC_hg19", "Biostrings", "IRanges", "XVector", "seqLogo"],
"broken": true
},
"multiOmicsViz": {
"name": "multiOmicsViz",
"version": "1.24.0",
"sha256": "129k094ml403w25k3kipzbavx78p14jxq40a8d733qyqp8mcnlrs",
"depends": ["doParallel", "foreach", "SummarizedExperiment"],
"broken": true
},
"multiSight": {
"name": "multiSight",
"version": "1.7.0",
"sha256": "1v2ml1qh250lidm5a0xw4b3xbxd2as86p703qn5s8m1xi6l89b9c",
"depends": ["anyLib", "biosigner", "caret", "clusterProfiler", "config", "DESeq2", "dplyr", "DT", "easyPubMed", "enrichplot", "ggnewscale", "golem", "htmltools", "igraph", "infotheo", "metap", "mixOmics", "networkD3", "ppcor", "R6", "ReactomePA", "rmarkdown", "rWikiPathways", "shiny", "shinydashboard", "stringr"],
"broken": true
},
"mvGST": {
"name": "mvGST",
"version": "1.4.0",
"sha256": "1yi8558lkqfrmxgighb5v8q12gwqlbs2ds610fgf8ggrdn84bzq8",
"depends": ["AnnotationDbi", "GO_db", "GOstats", "Rgraphviz", "annotate", "gProfileR", "graph", "stringr", "topGO"],
"broken": true
},
"nanotatoR": {
"name": "nanotatoR",
"version": "1.18.0",
"sha256": "1nnh4g4b7k6mp922pr52sxlrh6wvfyx7jhckmwrd12l1yjq010pb",
"depends": ["AnnotationDbi", "curl", "dplyr", "GenomicRanges", "hash", "httr", "knitr", "openxlsx", "org_Hs_eg_db", "rentrez", "rlang", "stringr", "testthat", "tidyverse", "XML"],
"broken": true
},
"neaGUI": {
"name": "neaGUI",
"version": "1.8.0",
"sha256": "1xms5k8zzbk31sj0f92rsqjv40vcqy89pmy8z3j0336iascqbx9l",
"depends": ["hwriter"],
"broken": true
},
"nem": {
"name": "nem",
"version": "2.44.0",
"sha256": "1bkq622jyrfn0v4wyw5ycxmri8kyils4wznsz26ki3awff34lq3h",
"depends": ["RBGL", "RColorBrewer", "Rgraphviz", "boot", "e1071", "graph", "limma", "plotrix", "statmod"],
"broken": true
},
"netDx": {
"name": "netDx",
"version": "1.16.0",
"sha256": "00ghcj5hzb06pi9aj2rdnasyqgqnvr9qjb0m6b0476yv2mx5x24k",
"depends": ["BiocFileCache", "GenomeInfoDb", "GenomicRanges", "IRanges", "MultiAssayExperiment", "RColorBrewer", "ROCR", "Rtsne", "S4Vectors", "bigmemory", "combinat", "doParallel", "foreach", "ggplot2", "glmnet", "httr", "igraph", "plotrix", "pracma", "rappdirs", "reshape2"],
"broken": true
},
"netOmics": {
"name": "netOmics",
"version": "1.8.0",
"sha256": "03nyjvcr2hldsfifj0dix1bc79z05i9x2hgc5z2g9hd1jyijljyd",
"depends": ["AnnotationDbi", "dplyr", "ggplot2", "GO_db", "gprofiler2", "igraph", "magrittr", "minet", "purrr", "RandomWalkRestartMH", "tibble", "tidyr"],
"broken": true
},
"netZooR": {
"name": "netZooR",
"version": "1.10.0",
"sha256": "11rq1lhxhwij6wik087wmnzk8aswhmmf3yzcpiljxbk8szsm8np7",
"depends": ["AnnotationDbi", "Biobase", "GO_db", "GOstats", "MASS", "Matrix", "RCy3", "STRINGdb", "assertthat", "data_table", "doParallel", "dplyr", "foreach", "ggdendro", "ggplot2", "gplots", "igraph", "matrixStats", "matrixcalc", "nnet", "org_Hs_eg_db", "pandaR", "penalized", "reshape", "reshape2", "reticulate", "tidyr", "vegan", "viridisLite", "yarn"],
"broken": true
},
"netbenchmark": {
"name": "netbenchmark",
"version": "1.2.0",
"sha256": "10s8xsisjp9sj9dl67bgn94ipm6a6kpqli3pvjdpxkmvjkg400kg",
"depends": ["GeneNet", "Matrix", "Rcpp", "c3net", "corpcor", "fdrtool", "grndata", "minet", "pracma", "randomForest"],
"broken": true
},
"netbiov": {
"name": "netbiov",
"version": "1.4.0",
"sha256": "1h3986kfi516xlw675cq901ls9v7rj5rr0ls5lny21wd439n2avf",
"depends": ["igraph"],
"broken": true
},
"netboxr": {
"name": "netboxr",
"version": "1.9.0",
"sha256": "1brnm60745s2axls4p6qcxipjjr3ph9ijg1q604fgm42rf6i7qzm",
"depends": ["clusterProfiler", "data_table", "DT", "gplots", "igraph", "jsonlite", "plyr", "RColorBrewer"],
"broken": true
},
"networkBMA": {
"name": "networkBMA",
"version": "1.12.0",
"sha256": "0zkf10iqiabsln1jxq0sypr43mrw6k82l3pdp5bg9kcv0bqqqy5k",
"depends": ["BMA", "Rcpp", "RcppArmadillo", "RcppEigen"],
"broken": true
},
"nudge": {
"name": "nudge",
"version": "1.36.0",
"sha256": "1px6hnda7hp7yx9imkl8xq8m772csd2qic0kq5bqwshk5qdvfhw7",
"depends": [],
"broken": true
},
"oneChannelGUI": {
"name": "oneChannelGUI",
"version": "1.36.0",
"sha256": "0r5y531y4niy9gh64n7nk8a0xcj8lyg36axhcjx116ycsqa00x5h",
"depends": ["Biobase", "Biostrings", "IRanges", "Rsamtools", "affylmGUI", "chimera", "siggenes", "tkWidgets", "tkrplot"],
"broken": true
},
"oneSENSE": {
"name": "oneSENSE",
"version": "1.20.0",
"sha256": "1lzb8i3frv3va2q28glwnjwszrynhky5y8fx10q4h52p2wqgc4v3",
"depends": ["flowCore", "gplots", "plotly", "Rtsne", "scatterplot3d", "shiny", "shinyFiles", "webshot"],
"broken": true
},
"ontoCAT": {
"name": "ontoCAT",
"version": "1.22.0",
"sha256": "03vy4210m31jzhhhbhw3ixhm1lji4qil2zp0ckmyh3xb8m8s8fzl",
"depends": ["rJava"],
"broken": true
},
"openPrimeRui": {
"name": "openPrimeRui",
"version": "1.26.0",
"sha256": "0w00ya6xb70am000hybrxgcq8bpd950w36n01v4l0pfmfcvqd9fa",
"depends": ["DT", "openPrimeR", "rmarkdown", "shiny", "shinyBS", "shinyjs"],
"broken": true
},
"oppti": {
"name": "oppti",
"version": "1.21.0",
"sha256": "0v7hy9qy3mjx8sj3rvs23sy38r8nfgr4d4na4k8h65y2mi8xfqnp",
"depends": ["RColorBrewer", "devtools", "ggplot2", "knitr", "limma", "parallelDist", "pheatmap", "reshape"],
"broken": true
},
"pareg": {
"name": "pareg",
"version": "1.8.0",
"sha256": "1b9vvn1ppw1vbfmkzkbd6b01pkqnsknbrjv1js983dpjv23x6xlb",
"depends": ["DOSE", "Matrix", "basilisk", "devtools", "doFuture", "doRNG", "dplyr", "foreach", "future", "ggplot2", "ggraph", "ggrepel", "glue", "hms", "igraph", "keras", "logger", "magrittr", "nloptr", "progress", "proxy", "purrr", "reticulate", "rlang", "stringr", "tensorflow", "tfprobability", "tibble", "tidygraph", "tidyr"],
"broken": true
},
"pathVar": {
"name": "pathVar",
"version": "1.0.1",
"sha256": "1ixraifr8d86m9rdg38d6kfzmgghjxasgi3abb1i8knjyfwrc05v",
"depends": ["EMT", "Matching", "data_table", "ggplot2", "gridExtra", "mclust"],
"broken": true
},
"paxtoolsr": {
"name": "paxtoolsr",
"version": "1.4.6",
"sha256": "170gm5qxlsz2dv249q16shpj0xm9y7rp3rpn9ij6r2c5d3xn8i21",
"depends": ["R_utils", "XML", "data_table", "httr", "igraph", "plyr", "rJava", "rjson"],
"broken": true
},
"pcaGoPromoter": {
"name": "pcaGoPromoter",
"version": "1.14.0",
"sha256": "1w0cpakxlm8dx6z3j844xmkz3dawiaschrjcjlkqjv9ay8vfkhz8",
"depends": ["AnnotationDbi", "Biostrings", "ellipse"],
"broken": true
},
"pcot2": {
"name": "pcot2",
"version": "1.38.0",
"sha256": "1ycsbry5srf1msq4vcvv0q34lgzkwadh7k1pgwv963i567i4lx3b",
"depends": ["Biobase", "amap"],
"broken": true
},
"pcxn": {
"name": "pcxn",
"version": "2.26.0",
"sha256": "13gahdsvz7ss3chcvqmdyrnw31rcgiplqg7awrn930drwljlimqk",
"depends": ["pcxnData", "pheatmap"],
"broken": true
},
"pdmclass": {
"name": "pdmclass",
"version": "1.42.0",
"sha256": "1f4zrxbyk49hm0cxp0g1786cwc7g1k5z6v3hn2z66m7rbapz8afy",
"depends": ["Biobase", "fibroEset", "mda"],
"broken": true
},
"perturbatr": {
"name": "perturbatr",
"version": "1.13.0",
"sha256": "0ssk8cr42hibn917s2z2nzcdan54c7xiydypbi8f3g4w68q4ly31",
"depends": ["assertthat", "diffusr", "doParallel", "dplyr", "foreach", "formula_tools", "ggplot2", "igraph", "lazyeval", "lme4", "magrittr", "rlang", "scales", "tibble", "tidyr"],
"broken": true
},
"phemd": {
"name": "phemd",
"version": "1.18.0",
"sha256": "174jp26insq2mwf9yw9bls4i9b2a8vccfkrg2h1dzvyyk513bi83",
"depends": ["Biobase", "BiocGenerics", "cluster", "cowplot", "destiny", "ggplot2", "igraph", "maptree", "monocle", "phateR", "pheatmap", "pracma", "RANN", "RColorBrewer", "reticulate", "Rtsne", "S4Vectors", "scatterplot3d", "Seurat", "SingleCellExperiment", "SummarizedExperiment", "transport", "VGAM"],
"broken": true
},
"phenoDist": {
"name": "phenoDist",
"version": "1.18.0",
"sha256": "0kjsdgvr5kmrnn7mjzphk5r6irgjv5cfgmrd4yddprbmmln39avn",
"depends": ["e1071", "imageHTS"],
"broken": true
},
"pint": {
"name": "pint",
"version": "1.20.0",
"sha256": "19q21b3zdn4adx49zn88z69xz3mqza58xdhig3zicn9s0g21bfz4",
"depends": ["Matrix", "mvtnorm"],
"broken": true
},
"pkgDepTools": {
"name": "pkgDepTools",
"version": "1.36.0",
"sha256": "1v2fsax49wklwdmgxp9pjyp18cbj2rsg7yd68mwr2amlihgvmsp1",
"depends": ["RBGL", "graph"],
"broken": true
},
"plateCore": {
"name": "plateCore",
"version": "1.28.0",
"sha256": "1v7shvjnav930grswbixj8fyabmamsgry5g5is3sf9ymp9r8gh5x",
"depends": ["Biobase", "MASS", "flowCore", "flowStats", "flowViz", "lattice", "latticeExtra", "robustbase"],
"broken": true
},
"plethy": {
"name": "plethy",
"version": "1.8.0",
"sha256": "1skaqws1yb8n8li4daprq4x8vrbyykm3fk6pzwx7iyr3nf2r2zz5",
"depends": ["Biobase", "BiocGenerics", "DBI", "IRanges", "RColorBrewer", "RSQLite", "S4Vectors", "Streamer", "ggplot2", "plyr", "reshape2"],
"broken": true
},
"plrs": {
"name": "plrs",
"version": "1.10.0",
"sha256": "1f2dlgcbpfrn5za2z7nf1y8jzrcb5hzb3gix18nyqmz9syg57zha",
"depends": ["Biobase", "BiocGenerics", "CGHbase", "Rcsdp", "ic_infer", "marray", "quadprog"],
"broken": true
},
"plw": {
"name": "plw",
"version": "1.30.0",
"sha256": "190bccvxhdgp3ah9vzdpjddb33ck38r5x4gw1f8vwxh0mw79vf9c",
"depends": ["MASS", "affy"],
"broken": true
},
"polyester": {
"name": "polyester",
"version": "1.6.0",
"sha256": "0if2rbgbfc3ghz5mnmpmpv6rq63qjm3l16gmlr493vfrpxdzclnv",
"depends": ["Biostrings", "IRanges", "S4Vectors", "limma", "logspline"],
"broken": true
},
"ppiStats": {
"name": "ppiStats",
"version": "1.36.0",
"sha256": "1s5xv565w924g71qaxgmhfszrkqs3arzi8l0vzcz446r2pgm6d32",
"depends": ["Biobase", "Category", "RColorBrewer", "ScISI", "graph", "lattice", "ppiData"],
"broken": true
},
"prada": {
"name": "prada",
"version": "1.46.0",
"sha256": "0ak21586bbkbpwji1pcbr44dlwyhslscrqm2y172310xbxm0sqbg",
"depends": ["Biobase", "BiocGenerics", "MASS", "RColorBrewer", "rrcov"],
"broken": true
},
"predictionet": {
"name": "predictionet",
"version": "1.16.0",
"sha256": "1q7nl11kvh2rl5rzb4qnq5ckdrdkna0arfnjmki35lr8hyh65id0",
"depends": ["MASS", "RBGL", "igraph", "penalized"],
"broken": true
},
"proBatch": {
"name": "proBatch",
"version": "1.14.0",
"sha256": "079dh61v1dmsasrh5sn6sn1rgi34mavxa1sc1y8x6wqjwabm4w1j",
"depends": ["Biobase", "corrplot", "data_table", "dplyr", "ggfortify", "ggplot2", "lazyeval", "lubridate", "magrittr", "pheatmap", "preprocessCore", "purrr", "pvca", "RColorBrewer", "reshape2", "rlang", "scales", "sva", "tibble", "tidyr", "viridis", "wesanderson", "WGCNA"],
"broken": true
},
"proFIA": {
"name": "proFIA",
"version": "1.23.0",
"sha256": "0y08vj401f45dvgxjwjx94hvd0rk1wljk8n1irpkdafg24gv4fvj",
"depends": ["Biobase", "BiocParallel", "minpack_lm", "missForest", "pracma", "ropls", "xcms"],
"broken": true
},
"profileplyr": {
"name": "profileplyr",
"version": "1.24.1",
"sha256": "02y423r6g9bi7g5izvrwmxmrxrkyah8496pdrm1xhq97i9k8pdba",
"depends": ["BiocGenerics", "BiocParallel", "ChIPseeker", "ComplexHeatmap", "EnrichedHeatmap", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "R_utils", "Rsamtools", "S4Vectors", "SummarizedExperiment", "TxDb_Hsapiens_UCSC_hg19_knownGene", "TxDb_Hsapiens_UCSC_hg38_knownGene", "TxDb_Mmusculus_UCSC_mm10_knownGene", "TxDb_Mmusculus_UCSC_mm9_knownGene", "circlize", "dplyr", "ggplot2", "magrittr", "org_Hs_eg_db", "org_Mm_eg_db", "pheatmap", "rGREAT", "rjson", "rlang", "rtracklayer", "soGGi", "tidyr", "tiff"],
"broken": true
},
"prot2D": {
"name": "prot2D",
"version": "1.8.0",
"sha256": "0pmsl550wvxnqx5zbj8b6lhvlb2bcmvi3xxx66x8r1sz3cdy3l7h",
"depends": ["Biobase", "MASS", "Mulcom", "fdrtool", "impute", "limma", "qvalue", "samr", "st"],
"broken": true
},
"proteasy": {
"name": "proteasy",
"version": "1.2.0",
"sha256": "1mfk69k44krdj4wp6xpil391j9jrppyx1crvra525p8hahzc2d5m",
"depends": ["AnnotationFilter", "data_table", "EnsDb_Hsapiens_v86", "EnsDb_Mmusculus_v79", "EnsDb_Rnorvegicus_v79", "ensembldb", "Rcpi", "stringr"],
"broken": true
},
"proteoQC": {
"name": "proteoQC",
"version": "1.6.0",
"sha256": "15raykmw19k4yn4jppw4lqwgarr8b7sfsvhcif49xvw7k1dwj5ys",
"depends": ["MSnbase", "Nozzle_R1", "Rcpp", "VennDiagram", "XML", "ggplot2", "plyr", "rTANDEM", "reshape2", "seqinr"],
"broken": true
},
"psygenet2r": {
"name": "psygenet2r",
"version": "1.36.0",
"sha256": "1khjid5lkkn5qpnk9adw1in4km41q067mj5r5yqs2iz5hv4vx6xv",
"depends": ["BgeeDB", "Biobase", "GO_db", "RCurl", "biomaRt", "ggplot2", "igraph", "labeling", "reshape2", "stringr", "topGO"],
"broken": true
},
"pulsedSilac": {
"name": "pulsedSilac",
"version": "1.9.1",
"sha256": "1zb8xzs9h4rcrnmsfvrwb1qixn3jbnzxdwqgdrb82hgmxabmajlb",
"depends": ["cowplot", "ggplot2", "ggridges", "MuMIn", "R_utils", "robustbase", "S4Vectors", "SummarizedExperiment", "UpSetR"],
"broken": true
},
"pwOmics": {
"name": "pwOmics",
"version": "1.2.0",
"sha256": "0vlr71mhch716xl2i0366pxjkawci0g2imvfhsqinv5gd92m6hpq",
"depends": ["AnnotationDbi", "AnnotationHub", "Biobase", "BiocGenerics", "GenomicRanges", "STRINGdb", "biomaRt", "data_table", "gplots", "igraph", "rBiopaxParser"],
"broken": true
},
"pwrEWAS": {
"name": "pwrEWAS",
"version": "1.14.0",
"sha256": "1913h2syad9mfspxjvmrwm0mrcklbcl89lj04rn5x0xgfk8rk58a",
"depends": ["abind", "BiocManager", "CpGassoc", "doParallel", "doSNOW", "foreach", "genefilter", "ggplot2", "limma", "pwrEWAS_data", "shiny", "shinyBS", "shinyWidgets", "truncnorm"],
"broken": true
},
"qckitfastq": {
"name": "qckitfastq",
"version": "1.24.0",
"sha256": "16lcg42jclw24nk1k9bxy7vm3qj5vyqny99b0ixm0ilda6wkl1f7",
"depends": ["RSeqAn", "Rcpp", "data_table", "dplyr", "ggplot2", "magrittr", "reshape2", "rlang", "seqTools", "zlibbioc"],
"broken": true
},
"qrqc": {
"name": "qrqc",
"version": "1.24.0",
"sha256": "0850frx6fg9py2laav0yqavl9ckbn6y475xm9r6gxvyzp63smzdg",
"depends": ["Biostrings", "Rsamtools", "biovizBase", "brew", "ggplot2", "plyr", "reshape", "testthat", "xtable"],
"broken": true
},
"rDGIdb": {
"name": "rDGIdb",
"version": "1.30.0",
"sha256": "1v96nj1ffmg1678p7rspcqsnqvwcssv96jcyqqbb8v8sryflwmi5",
"depends": ["httr", "jsonlite"],
"broken": true
},
"rGADEM": {
"name": "rGADEM",
"version": "2.55.0",
"sha256": "1fjqvkayam7xpvvbdlz6nafgsrw46vgmbkl96mfvm4szclrxzs8g",
"depends": ["BSgenome", "Biostrings", "GenomicRanges", "IRanges", "seqLogo"],
"broken": true
},
"rHVDM": {
"name": "rHVDM",
"version": "1.36.0",
"sha256": "0k1gccnac59q54y2nypzgip2srs5yg3v2hhrz86ps50p2lx4pqd2",
"depends": ["Biobase", "R2HTML", "affy", "minpack_lm"],
"broken": true
},
"rMAT": {
"name": "rMAT",
"version": "3.20.0",
"sha256": "0dq4ipz1j6qai8q8z038hjb5j0w67gp7449vj8psgca2854gxa7s",
"depends": ["Biobase", "BiocGenerics", "IRanges", "affxparser"],
"broken": true
},
"rSFFreader": {
"name": "rSFFreader",
"version": "0.18.0",
"sha256": "0z2lkjbs3svx1b9zr4smjwrcd9xzxhfp98428vzaqq0k79h1v666",
"depends": ["Biostrings", "IRanges", "S4Vectors", "ShortRead", "XVector"],
"broken": true
},
"rTANDEM": {
"name": "rTANDEM",
"version": "1.10.0",
"sha256": "1dmaqdjfmjkkrddf666hpp95s7s6x0ssinx9aybl6952ylfjgcd1",
"depends": ["Rcpp", "XML", "data_table"],
"broken": true
},
"rama": {
"name": "rama",
"version": "1.44.0",
"sha256": "0nka6a2dk7jn4lk0i2p91hxwdgpny6y3j4dz709crrxlz3xjqflm",
"depends": [],
"broken": true
},
"reb": {
"name": "reb",
"version": "1.48.0",
"sha256": "1bxijf91vdr6088459r29kvy691bjbscy170pc0739iqbg7z80zm",
"depends": ["Biobase", "idiogram"],
"broken": true
},
"receptLoss": {
"name": "receptLoss",
"version": "1.20.0",
"sha256": "1b6lfs7dmizyvl1x21rf2h07pc04x7ains30zn64p8xrg6cxkfr9",
"depends": ["SummarizedExperiment", "dplyr", "ggplot2", "magrittr", "tidyr"],
"broken": true
},
"regionalpcs": {
"name": "regionalpcs",
"version": "1.6.0",
"sha256": "07c66bi8df6pl6biim16z108mv5zb5cr7xzifm41vbfj2cwyjkdp",
"depends": ["GenomicRanges", "PCAtools", "dplyr", "tibble"],
"broken": true
},
"restfulSE": {
"name": "restfulSE",
"version": "1.24.0",
"sha256": "0i40yfvynxy34jfkvzyvjwvxf89zi4pvy9m9i0bk93l17gyhnjyl",
"depends": ["AnnotationDbi", "AnnotationHub", "bigrquery", "Biobase", "DBI", "DelayedArray", "dplyr", "ExperimentHub", "GO_db", "magrittr", "reshape2", "rhdf5client", "rlang", "S4Vectors", "SummarizedExperiment"],
"broken": true
},
"rnaSeqMap": {
"name": "rnaSeqMap",
"version": "2.28.0",
"sha256": "0mfcy7l31g5z5yv12sv9imaf19p9vawnk7cqcm50x2sm032r8n7f",
"depends": ["Biobase", "DBI", "DESeq", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "edgeR"],
"broken": true
},
"rols": {
"name": "rols",
"version": "3.4.0",
"sha256": "1v6sp43j9ls4mxmfhzr3slq9kbhsnhwk7400i832yk1p7i0l9h4v",
"depends": ["Biobase", "BiocGenerics", "httr2", "jsonlite"],
"broken": true
},
"sRAP": {
"name": "sRAP",
"version": "1.10.0",
"sha256": "080s88l3a2fbgqnc8sy41kwzkm6skjazkirqini7n6xqcsqb9lih",
"depends": ["ROCR", "WriteXLS", "gplots", "pls", "qvalue"],
"broken": true
},
"sampleClassifier": {
"name": "sampleClassifier",
"version": "1.32.0",
"sha256": "18cmgpwwd54mkkpg13wjznbk71lp0bz1p5ics9mhxiq6vfw8i62l",
"depends": ["MGFM", "MGFR", "annotate", "e1071", "ggplot2"],
"broken": true
},
"sapFinder": {
"name": "sapFinder",
"version": "1.8.0",
"sha256": "12a0wcjxcz77b06bymhqcj5wxzm478mlj9vcvbbqhdfvj7214hy9",
"depends": ["Rcpp", "pheatmap", "rTANDEM"],
"broken": true
},
"saps": {
"name": "saps",
"version": "2.2.0",
"sha256": "11v7nxlcnkslxl0giv3y2naxpfsmqmrj6b4y2g6zbp48zml45jgl",
"depends": ["piano", "reshape2", "survcomp", "survival"],
"broken": true
},
"savR": {
"name": "savR",
"version": "1.8.0",
"sha256": "1vxxmzr8k6fn9fqr0pbfvccqq30d8w3fwjcr5x0bh1d77mzgf9n1",
"depends": ["XML", "ggplot2", "gridExtra", "reshape2", "scales"],
"broken": true
},
"sbgr": {
"name": "sbgr",
"version": "1.0.0",
"sha256": "0bvvxd0c4k4mmwkcb9w02i2kb6vwlq84w8vfqiamnwjy2vgjgka9",
"depends": ["httr", "jsonlite", "objectProperties"],
"broken": true
},
"scAlign": {
"name": "scAlign",
"version": "1.12.0",
"sha256": "1mlhxwsfrmhysa5mcyx7vf2jn49snf41yb7xqmyi40wilj9h8qlb",
"depends": ["FNN", "ggplot2", "irlba", "purrr", "Rtsne", "Seurat", "SingleCellExperiment", "tensorflow"],
"broken": true
},
"scClassifR": {
"name": "scClassifR",
"version": "1.2.0",
"sha256": "0p9l9q5ina0axrqvqn1y5wkfqi0nacxm3nm6ny34j53znv07b2zz",
"depends": ["ape", "caret", "data_tree", "dplyr", "e1071", "ggplot2", "kernlab", "pROC", "ROCR", "Seurat", "SingleCellExperiment", "SummarizedExperiment"],
"broken": true
},
"scFeatures": {
"name": "scFeatures",
"version": "1.8.0",
"sha256": "0srvd9jayyy3793jmm7pcq70m4mhvdc9qhsszbnnl2qcd33wsnkv",
"depends": ["AUCell", "BiocParallel", "DT", "DelayedArray", "DelayedMatrixStats", "EnsDb_Hsapiens_v79", "EnsDb_Mmusculus_v79", "GSVA", "MatrixGenerics", "Seurat", "SingleCellSignalR", "ape", "cli", "dplyr", "ensembldb", "glue", "gtools", "msigdbr", "proxyC", "reshape2", "rmarkdown", "spatstat_explore", "spatstat_geom", "tidyr"],
"broken": true
},
"scMAGeCK": {
"name": "scMAGeCK",
"version": "1.9.1",
"sha256": "1i6l8jxrd66aqk3m9212wsi8jqklvs0agsqrllvf9mrh16js4vby",
"depends": ["ggplot2", "Seurat"],
"broken": true
},
"scQTLtools": {
"name": "scQTLtools",
"version": "1.0.3",
"sha256": "0k1ps1l56a7ybk28py515c39a9b798ysh7c47zj3w6fqncc6gpl7",
"depends": ["DESeq2", "GOSemSim", "Matrix", "SeuratObject", "SingleCellExperiment", "SummarizedExperiment", "VGAM", "biomaRt", "dplyr", "gamlss", "ggplot2", "limma", "magrittr", "patchwork", "progress", "stringr"],
"broken": true
},
"scsR": {
"name": "scsR",
"version": "1.6.0",
"sha256": "0g1vgx8wrdwbhlzmf0a11fg5jnbkvz402h8qj48vj4bq8j202bc1",
"depends": ["BiocGenerics", "Biostrings", "IRanges", "RColorBrewer", "STRINGdb", "ggplot2", "hash", "plyr", "sqldf"],
"broken": true
},
"seq2pathway": {
"name": "seq2pathway",
"version": "1.40.0",
"sha256": "1js23facw3z31fn4g8xrnxsvwfj4ij1spancl243wwnpdspw2vwy",
"depends": ["GSA", "GenomicRanges", "WGCNA", "biomaRt", "nnet", "seq2pathway_data"],
"broken": true
},
"seqArchR": {
"name": "seqArchR",
"version": "1.12.0",
"sha256": "05i8ln6dbq46v4gnajmrfrnsi2y7mw22dzsmcbc6zni64c2r0186",
"depends": ["BiocParallel", "Biostrings", "MASS", "Matrix", "cli", "cluster", "cvTools", "fpc", "ggplot2", "ggseqlogo", "matrixStats", "prettyunits", "reshape2", "reticulate"],
"broken": true
},
"seqArchRplus": {
"name": "seqArchRplus",
"version": "1.8.0",
"sha256": "17pby4jz6422ndfkxzq19r7js01ai2mp4m6jn1dj622a16gvgkp4",
"depends": ["BSgenome", "BiocParallel", "Biostrings", "ChIPseeker", "GenomeInfoDb", "GenomicRanges", "IRanges", "RColorBrewer", "S4Vectors", "cli", "clusterProfiler", "cowplot", "factoextra", "ggimage", "ggplot2", "gridExtra", "heatmaps", "magick", "scales", "seqArchR", "seqPattern"],
"broken": true
},
"seqCNA": {
"name": "seqCNA",
"version": "1.16.0",
"sha256": "1wq92wszv0x99l52lm3k0zc2ffin1sp78xlyfabxpwi1v0yrkifl",
"depends": ["GLAD", "adehabitatLT", "doSNOW", "seqCNA_annot"],
"broken": true
},
"seqTools": {
"name": "seqTools",
"version": "1.42.0",
"sha256": "0g9308wmrz9mkf8r1vg8pbz7z2bpcqd6invn30aka18r8kwcim7s",
"depends": ["zlibbioc"],
"broken": true
},
"seqbias": {
"name": "seqbias",
"version": "1.18.0",
"sha256": "1wwskcbl3wd8gl63jl4wl0xwzj8kbwbc8xhp12z3xximngkk7dgd",
"depends": ["Biostrings", "GenomicRanges", "Rsamtools", "zlibbioc"],
"broken": true
},
"seqplots": {
"name": "seqplots",
"version": "1.8.1",
"sha256": "0anv2048m5zp2ijfzk79avcwzp662gw0y58j7nafha21j5s2qyhm",
"depends": ["BSgenome", "Biostrings", "DBI", "DT", "GenomeInfoDb", "GenomicRanges", "IRanges", "RColorBrewer", "RSQLite", "S4Vectors", "class", "digest", "fields", "ggplot2", "gridExtra", "jsonlite", "kohonen", "plotrix", "reshape2", "rtracklayer", "shiny"],
"broken": true
},
"shiny_gosling": {
"name": "shiny.gosling",
"version": "1.4.0",
"sha256": "1as7hrs3kfwxlr9zykdm88gv985gdnmzlrb2hn9zcgsalika53in",
"depends": ["digest", "fs", "htmltools", "jsonlite", "rjson", "rlang", "shiny", "shiny_react"],
"broken": true
},
"shinyTANDEM": {
"name": "shinyTANDEM",
"version": "1.8.0",
"sha256": "0dkgwfynznpq2q55d83w4x0nmal3dkgzxi1jpdcsasqlhsyqvmvx",
"depends": ["mixtools", "rTANDEM", "shiny", "xtable"],
"broken": true
},
"sigPathway": {
"name": "sigPathway",
"version": "1.38.0",
"sha256": "126cyw88d6rxp3bzdqsmm2v0kvhn650qmi4zcs9v50n0hhwyrxrf",
"depends": [],
"broken": true
},
"sigaR": {
"name": "sigaR",
"version": "1.14.0",
"sha256": "07ip468liyg9b6q9izd1wdp29p9f2icfs01nf0il4gc76h6d0rr5",
"depends": ["Biobase", "CGHbase", "MASS", "corpcor", "igraph", "marray", "mvtnorm", "penalized", "quadprog", "snowfall"],
"broken": true
},
"simpleaffy": {
"name": "simpleaffy",
"version": "2.46.0",
"sha256": "1x3f7hm7w44yarq4irv791330zfamhsqqwnqz8xfwrpvjrkv6avn",
"depends": ["Biobase", "BiocGenerics", "affy", "gcrma", "genefilter"],
"broken": true
},
"simulatorZ": {
"name": "simulatorZ",
"version": "1.4.0",
"sha256": "1sypvrwq6ay7lzmb9cmpix1zgzafzryvf4my5jky846bcpam91qj",
"depends": ["Biobase", "BiocGenerics", "GenomicRanges", "Hmisc", "IRanges", "S4Vectors", "SummarizedExperiment", "gbm", "survival"],
"broken": true
},
"single": {
"name": "single",
"version": "1.7.0",
"sha256": "0h7h9m4xr65nayr707jvjnbic1q4z0hsghw5i3pfpz2n6p9pb8s8",
"depends": ["BiocGenerics", "Biostrings", "GenomicAlignments", "IRanges", "Rsamtools", "dplyr", "reshape2", "rlang", "stringr", "tidyr"],
"broken": true
},
"slinky": {
"name": "slinky",
"version": "1.12.0",
"sha256": "05ywydvyz3jnzbhabhz1sd61hpy9nb22512zpbi48mv5wic1sv3v",
"depends": ["curl", "dplyr", "foreach", "httr", "jsonlite", "readr", "rhdf5", "SummarizedExperiment", "tidyr"],
"broken": true
},
"snapCGH": {
"name": "snapCGH",
"version": "1.40.0",
"sha256": "0fjqp0qhwk041pgwqp3av5ihkf4xb9li6zy6gmvk24hlj8sm600z",
"depends": ["DNAcopy", "GLAD", "aCGH", "cluster", "limma", "tilingArray"],
"broken": true
},
"soGGi": {
"name": "soGGi",
"version": "1.40.1",
"sha256": "0qz7ilxxp8f9yi2bhp7w6nk8jrakmp8ymi0r7zqzmr2ldjp03ans",
"depends": ["BiocGenerics", "BiocParallel", "Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "SummarizedExperiment", "chipseq", "ggplot2", "preprocessCore", "reshape2", "rtracklayer"],
"broken": true
},
"sojourner": {
"name": "sojourner",
"version": "1.11.0",
"sha256": "1s0iqzn65s9g4yymy059z122i9wvgkcb5718snzxhj7mkqjzwhhc",
"depends": ["dplyr", "EBImage", "fitdistrplus", "ggplot2", "gridExtra", "lattice", "MASS", "mclust", "minpack_lm", "mixtools", "mltools", "nls2", "pixmap", "plyr", "R_matlab", "Rcpp", "reshape2", "rlang", "scales", "shiny", "shinyjs", "sp", "truncnorm"],
"broken": true
},
"spade": {
"name": "spade",
"version": "1.18.2",
"sha256": "0m2784x2ysp4mc7m8n8scpr1h38m3p9glcc5jd6cix55bh3yzykk",
"depends": ["Biobase", "flowCore", "igraph"],
"broken": true
},
"sparseDOSSA": {
"name": "sparseDOSSA",
"version": "1.24.0",
"sha256": "1xy9kd5a9vilwkgr4xw6lcdwgwykg7q7kildpfw4gqymd1frnjp6",
"depends": ["MASS", "MCMCpack", "optparse", "tmvtnorm"],
"broken": true
},
"spatialHeatmap": {
"name": "spatialHeatmap",
"version": "2.14.1",
"sha256": "002w2srp628asbwjc5q8jn51f4czrbna8raqa0sb1w7qlhckccak",
"depends": ["Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "data_table", "dplyr", "edgeR", "genefilter", "ggplot2", "ggplotify", "grImport", "gridExtra", "igraph", "reshape2", "rsvg", "shiny", "shinydashboard", "spsComps", "tibble", "xml2"],
"broken": true
},
"spatzie": {
"name": "spatzie",
"version": "1.14.0",
"sha256": "1jvz4szaqx1l7n87dd68mzpgpskxarpkg36qz0nx9x0d9xv4a9jd",
"depends": ["BSgenome", "BiocGenerics", "GenomeInfoDb", "GenomicFeatures", "GenomicInteractions", "GenomicRanges", "IRanges", "MatrixGenerics", "S4Vectors", "SummarizedExperiment", "TFBSTools", "ggplot2", "matrixStats", "motifmatchr"],
"broken": true
},
"spliceR": {
"name": "spliceR",
"version": "1.12.0",
"sha256": "0r5j0ibl2ccsxb7rr2fxw4b07wbdiyfndxkl4pgd9h0ks4qyhyjy",
"depends": ["GenomicRanges", "IRanges", "RColorBrewer", "VennDiagram", "cummeRbund", "plyr", "rtracklayer"],
"broken": true
},
"spliceSites": {
"name": "spliceSites",
"version": "1.8.3",
"sha256": "1jifh0nbqjhrc07jfc50hfk4wn1hv3a863rbr3fnqlg9rwg044w7",
"depends": ["Biobase", "BiocGenerics", "Biostrings", "IRanges", "doBy", "seqLogo"],
"broken": true
},
"splicegear": {
"name": "splicegear",
"version": "1.42.0",
"sha256": "1g2fqql1wqzwz1vx5cq03ckld0gccqk6rv9l99xsaa8mhf0rn1qa",
"depends": ["Biobase", "XML", "annotate"],
"broken": true
},
"spotSegmentation": {
"name": "spotSegmentation",
"version": "1.44.0",
"sha256": "074nzh18pj6dpk9bqh8id0j2vpaxvhi2ddrz6hnza381wzdgxdr3",
"depends": ["mclust"],
"broken": true
},
"sscore": {
"name": "sscore",
"version": "1.42.0",
"sha256": "0h86crb241vmaczp76wz4zv9ni1snmlkrdi1md3hgq1hqxnn9gzs",
"depends": ["affy", "affyio"],
"broken": true
},
"staRank": {
"name": "staRank",
"version": "1.12.0",
"sha256": "1vgc3mhxyhrgwkapnqx4061l9l0nyc012508hma14xbxml3f76sg",
"depends": ["cellHTS2"],
"broken": true
},
"stepwiseCM": {
"name": "stepwiseCM",
"version": "1.16.0",
"sha256": "1ss79yr75kw7fsd8ihpivj9k5v32zxr3ymkl6prba0nyxdj5wyz9",
"depends": ["Biobase", "e1071", "glmpath", "pamr", "penalized", "randomForest", "snowfall", "tspair"],
"broken": true
},
"struct": {
"name": "struct",
"version": "1.20.2",
"sha256": "0280k9mv8q46fh78yhr5hxp5xayszl0q8qn39xhndin7i50pwni3",
"depends": ["S4Vectors", "SummarizedExperiment", "knitr", "ontologyIndex", "rols"],
"broken": true
},
"structToolbox": {
"name": "structToolbox",
"version": "1.20.0",
"sha256": "1wy0bw3a6q11w1fi4i17kswfjql9865rim1znhrmfq91vqndqldp",
"depends": ["ggplot2", "ggthemes", "gridExtra", "scales", "sp", "struct"],
"broken": true
},
"supraHex": {
"name": "supraHex",
"version": "1.8.0",
"sha256": "1g2zcarzi805y2933pyjdgg7l9imbhdf4pjhyr8bir0149li98cy",
"depends": ["MASS", "ape", "hexbin"],
"broken": true
},
"synapter": {
"name": "synapter",
"version": "2.31.0",
"sha256": "09jcnaw6mhcwk1mzysk3ryy6j11dasj3dkz7gajlgm855wcznkmp",
"depends": ["Biobase", "Biostrings", "MSnbase", "RColorBrewer", "cleaver", "lattice", "multtest", "qvalue", "readr", "rmarkdown"],
"broken": true
},
"tidytof": {
"name": "tidytof",
"version": "1.2.0",
"sha256": "13m028bm21j7404ncvpg7l7qvfkbvcnbrf4rp3xilyl5m6cyvidy",
"depends": ["Rcpp", "RcppHNSW", "doParallel", "dplyr", "flowCore", "foreach", "ggplot2", "ggraph", "glmnet", "purrr", "readr", "recipes", "rlang", "stringr", "survival", "tibble", "tidygraph", "tidyr", "tidyselect", "yardstick"],
"broken": true
},
"tofsims": {
"name": "tofsims",
"version": "1.22.0",
"sha256": "0da4843wbcr821yp8z3z4vd81qpm2lblckgd01fm89lmwj393z65",
"depends": ["ALS", "alsace", "KernSmooth", "ProtGenerics", "Rcpp", "RcppArmadillo", "signal"],
"broken": true
},
"traviz": {
"name": "traviz",
"version": "1.10.0",
"sha256": "1jjdfl8xvzlr31w74j12s5pdg5b1yylg1i30n804p9mqyx11g5sc",
"depends": ["Biobase", "RColorBrewer", "SingleCellExperiment", "SummarizedExperiment", "ggplot2", "mgcv", "princurve", "rgl", "slingshot", "viridis"],
"broken": true
},
"trena": {
"name": "trena",
"version": "1.22.2",
"sha256": "1xjhqm2g53kgcnnqhs5l3vn525h7amaz4hvsskjp5zb0gkfpiwh1",
"depends": ["AnnotationDbi", "biomaRt", "Biostrings", "BSgenome", "BSgenome_Hsapiens_UCSC_hg19", "BSgenome_Hsapiens_UCSC_hg38", "BSgenome_Mmusculus_UCSC_mm10", "DBI", "GenomicRanges", "glmnet", "lassopv", "MotifDb", "org_Hs_eg_db", "randomForest", "RMySQL", "RPostgreSQL", "RSQLite", "SNPlocs_Hsapiens_dbSNP150_GRCh38", "WGCNA", "xgboost"],
"broken": true
},
"triform": {
"name": "triform",
"version": "1.12.0",
"sha256": "0pqfz6msalr2264iwi2hzam2sv8yl4fy1ri72pff5gh14rbxgiml",
"depends": ["BiocGenerics", "IRanges", "yaml"],
"broken": true
},
"trigger": {
"name": "trigger",
"version": "1.53.0",
"sha256": "1m1gwqjz8b72csygl0yp2jz3i9pv8yxgb3gk5s53bbh27wfh9hk8",
"depends": ["corpcor", "qtl", "qvalue", "sva"],
"broken": true
},
"tscR": {
"name": "tscR",
"version": "1.11.0",
"sha256": "19jpmyb6dly7l0418c1z0dlb936wjh6nwkb0mvk13ym19qgv1my7",
"depends": ["class", "cluster", "dplyr", "dtw", "GenomicRanges", "ggplot2", "gridExtra", "IRanges", "knitr", "latex2exp", "prettydoc", "RColorBrewer", "rmarkdown", "S4Vectors", "SummarizedExperiment"],
"broken": true
},
"tspair": {
"name": "tspair",
"version": "1.28.0",
"sha256": "0m083g5z77n7dd4lnbhvbwjkykh7a4pl4v8j7ipr5w7f9dhdjk33",
"depends": ["Biobase"],
"broken": true
},
"waveTiling": {
"name": "waveTiling",
"version": "1.12.0",
"sha256": "0j866mgxj44mv4wp0yqnav83w8pfb47lmjhp1y0qqvxc6q9k80g8",
"depends": ["Biobase", "Biostrings", "GenomeGraphs", "GenomicRanges", "IRanges", "affy", "oligo", "oligoClasses", "preprocessCore", "waveslim"],
"broken": true
},
"wppi": {
"name": "wppi",
"version": "1.16.0",
"sha256": "17rkfbhy0r22ayca4c7n8gr2kjgbj3r4gk1rh423cp566x0n7pcp",
"depends": ["Matrix", "OmnipathR", "RCurl", "dplyr", "igraph", "logger", "magrittr", "progress", "purrr", "rlang", "tibble", "tidyr"],
"broken": true
},
"xps": {
"name": "xps",
"version": "1.30.0",
"sha256": "0wh98fsj3j368bxk4wa7rjd3acwl04r1dfiy13a89zv1fzv3wvky",
"depends": [],
"broken": true
},
"yaqcaffy": {
"name": "yaqcaffy",
"version": "1.30.0",
"sha256": "1pj2ksqbj7dlc76s6qagi7iq35wa83gx5cp0hm42w3bj7mxprjbi",
"depends": ["simpleaffy"],
"broken": true
},
"zlibbioc": {
"name": "zlibbioc",
"version": "1.54.0",
"sha256": "0ll3v5b9yk63rqiwm4g0dwan22mqkj2lv1b6czwghbpl1jpv2jrd",
"depends": [],
"broken": true
}
}
}