zimward
51 lines
1.2 KiB
Nix
51 lines
1.2 KiB
Nix
{
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lib,
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stdenv,
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fetchFromGitHub,
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cmake,
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libcxx,
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zlib,
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nix-update-script,
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}:
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stdenv.mkDerivation (finalAttrs: {
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pname = "splitcode";
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version = "0.31.6";
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src = fetchFromGitHub {
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owner = "pachterlab";
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repo = "splitcode";
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tag = "v${finalAttrs.version}";
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hash = "sha256-80XrLr6gk398a/JVSpb8j0i2pMEDKn0EnTiSw7cWS2c=";
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};
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nativeBuildInputs = [ cmake ];
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buildInputs = [
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libcxx
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zlib
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];
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doCheck = true;
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checkPhase = ''
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mkdir func_tests
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cp $src/func_tests/* ./func_tests/
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bash ./func_tests/runtests.sh
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'';
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passthru.updateScript = nix-update-script { };
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meta = {
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description = "Tool for flexible, efficient parsing, interpreting, and editing of technical sequences in sequencing reads";
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homepage = "https://github.com/pachterlab/splitcode";
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license = lib.licenses.bsd2;
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# also compiles on macos, but since it seems to return invalid results.
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platforms = lib.platforms.linux;
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maintainers = with lib.maintainers; [ zimward ];
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mainProgram = "splitcode";
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badPlatforms = [
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# Test hangs indefinitely. See https://github.com/pachterlab/splitcode/issues/31
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"aarch64-linux"
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];
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};
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})
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