Robert Schütz
1a04744f74
There is no need to disable Python packages for Python versions that are
no longer in Nixpkgs.
This change was generated using the following script:
pattern='^\s*disabled\s*=\s*pythonOlder\s*"3\.\([0-9]\|10\)"\s*;\s*$'
for f in $(find -name '*.nix'); do
grep -q "$pattern" "$f" || continue
sed -i "/$pattern/d" "$f"
if [ $(grep -c pythonOlder "$f") == 1 ]; then
sed -i '/^\s*pythonOlder,\s*$/d' "$f"
fi
nixfmt "$f"
done
49 lines
1.1 KiB
Nix
49 lines
1.1 KiB
Nix
{
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lib,
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buildPythonPackage,
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fetchPypi,
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setuptools,
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numpy,
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}:
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buildPythonPackage rec {
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pname = "biopython";
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version = "1.85";
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pyproject = true;
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src = fetchPypi {
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inherit pname version;
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hash = "sha256-Xa+rdAWd5OePSfa1aE7drm585G8Jz6BZwdEznoseoKY=";
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};
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build-system = [ setuptools ];
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dependencies = [ numpy ];
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pythonImportsCheck = [ "Bio" ];
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checkPhase = ''
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runHook preCheck
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export HOME=$(mktemp -d)
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cd Tests
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python run_tests.py --offline
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runHook postCheck
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'';
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meta = {
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description = "Python library for bioinformatics";
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longDescription = ''
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Biopython is a set of freely available tools for biological computation
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written in Python by an international team of developers. It is a
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distributed collaborative effort to develop Python libraries and
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applications which address the needs of current and future work in
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bioinformatics.
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'';
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homepage = "https://biopython.org/wiki/Documentation";
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maintainers = with lib.maintainers; [ luispedro ];
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license = lib.licenses.bsd3;
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};
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}
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