81 lines
1.7 KiB
Nix
81 lines
1.7 KiB
Nix
{
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lib,
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stdenv,
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buildPythonPackage,
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fetchFromGitHub,
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# build-system
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setuptools-scm,
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# dependencies
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cloudpickle,
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distributed,
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multipledispatch,
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scikit-learn,
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scipy,
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sparse,
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dask,
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# tests
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pytest-xdist,
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pytestCheckHook,
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}:
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buildPythonPackage rec {
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pname = "dask-glm";
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version = "0.3.2";
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pyproject = true;
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src = fetchFromGitHub {
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owner = "dask";
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repo = "dask-glm";
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tag = version;
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hash = "sha256-q98QMmw1toashimS16of54cgZgIPqkua3xGD1FZ1nTc=";
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};
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# ValueError: The truth value of an empty array is ambiguous. Use `array.size > 0` to check that an array is not empty.
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postPatch = ''
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substituteInPlace dask_glm/utils.py \
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--replace-fail "if arr:" "if (arr is not None) and (arr.size > 0):"
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'';
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build-system = [ setuptools-scm ];
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dependencies = [
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cloudpickle
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distributed
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multipledispatch
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scikit-learn
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scipy
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sparse
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]
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++ dask.optional-dependencies.array;
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nativeCheckInputs = [
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pytest-xdist
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pytestCheckHook
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];
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pythonImportsCheck = [ "dask_glm" ];
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disabledTests = [
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# ValueError: <class 'bool'> can be computed for one-element arrays only.
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"test_dot_with_sparse"
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# ValueError: `shape` was not provided.
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"test_sparse"
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];
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# On darwin, tests saturate the entire system, even when constrained to run single-threaded
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# Removing pytest-xdist AND setting --cores to one does not prevent the load from exploding
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doCheck = !stdenv.hostPlatform.isDarwin;
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meta = {
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description = "Generalized Linear Models with Dask";
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homepage = "https://github.com/dask/dask-glm/";
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changelog = "https://github.com/dask/dask-glm/releases/tag/${version}";
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license = lib.licenses.bsd3;
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maintainers = with lib.maintainers; [ GaetanLepage ];
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};
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}
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