Yueh-Shun Li
76e2a397c2
This treewide change targets Python packages that specifies pytest flags with pytestFlagsArray, and whose flags cannot be consructed by other pytestCheckHook-honoured arguments. Use the __structuredAttrs-agnostic argument pytestFlags instead of the deprecated pytestFlagsArray. For flags with option arguments, join each flag and their option argument into a single command-line argument following POSIX Utility Argument Syntax[1] for easier overriding (remove/replace). Examples: * [ "-W" "ignore:message:WarningClass" ] -> [ "-Wignore:message:WarningClass" ] * [ "--reruns" "3" ] -> [ "--reruns=3" ] [1]: https://pubs.opengroup.org/onlinepubs/009695399/basedefs/xbd_chap12.html
96 lines
1.9 KiB
Nix
96 lines
1.9 KiB
Nix
{
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lib,
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buildPythonPackage,
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fetchFromGitHub,
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# build-system
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setuptools-scm,
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# dependencies
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fastprogress,
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jax,
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jaxlib,
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jaxopt,
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optax,
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typing-extensions,
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# checks
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pytestCheckHook,
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pytest-xdist,
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stdenv,
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}:
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buildPythonPackage rec {
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pname = "blackjax";
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version = "1.2.5";
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pyproject = true;
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src = fetchFromGitHub {
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owner = "blackjax-devs";
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repo = "blackjax";
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tag = version;
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hash = "sha256-2GTjKjLIWFaluTjdWdUF9Iim973y81xv715xspghRZI=";
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};
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build-system = [ setuptools-scm ];
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dependencies = [
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fastprogress
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jax
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jaxlib
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jaxopt
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optax
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typing-extensions
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];
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nativeCheckInputs = [
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pytestCheckHook
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pytest-xdist
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];
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pytestFlags = [
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# DeprecationWarning: JAXopt is no longer maintained
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"-Wignore::DeprecationWarning"
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];
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disabledTestPaths = [
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"tests/test_benchmarks.py"
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# Assertion errors on numerical values
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"tests/mcmc/test_integrators.py"
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];
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disabledTests =
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[
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# too slow
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"test_adaptive_tempered_smc"
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# AssertionError on numerical values
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"test_barker"
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"test_mclmc"
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"test_mcse4"
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"test_normal_univariate"
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"test_nuts__with_device"
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"test_nuts__with_jit"
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"test_nuts__without_device"
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"test_nuts__without_jit"
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"test_smc_waste_free__with_jit"
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]
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++ lib.optionals (stdenv.hostPlatform.isLinux && stdenv.hostPlatform.isAarch64) [
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# Numerical test (AssertionError)
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# https://github.com/blackjax-devs/blackjax/issues/668
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"test_chees_adaptation"
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];
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pythonImportsCheck = [ "blackjax" ];
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meta = {
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homepage = "https://blackjax-devs.github.io/blackjax";
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description = "Sampling library designed for ease of use, speed and modularity";
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changelog = "https://github.com/blackjax-devs/blackjax/releases/tag/${version}";
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license = lib.licenses.asl20;
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maintainers = with lib.maintainers; [ bcdarwin ];
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};
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}
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