stuebinm
ff1a94e523
The nixpkgs-unstable channel's programs.sqlite was used to identify packages producing exactly one binary, and these automatically added to their package definitions wherever possible.
73 lines
1.8 KiB
Nix
73 lines
1.8 KiB
Nix
{ lib
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, buildPythonPackage
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, fetchFromGitHub
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, pythonOlder
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, pytestCheckHook
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, numpy
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, pykwalify
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, pywavelets
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, setuptools
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, simpleitk
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, six
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, versioneer
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}:
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buildPythonPackage rec {
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pname = "pyradiomics";
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version = "3.1.0";
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format = "pyproject";
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disabled = pythonOlder "3.6";
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src = fetchFromGitHub {
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owner = "AIM-Harvard";
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repo = "pyradiomics";
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rev = "refs/tags/v${version}";
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hash = "sha256-/qFNN63Bbq4DUZDPmwUGj1z5pY3ujsbqFJpVXbO+b8E=";
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name = "pyradiomics";
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};
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nativeBuildInputs = [ setuptools versioneer ];
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propagatedBuildInputs = [
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numpy
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pykwalify
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pywavelets
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simpleitk
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six
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];
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nativeCheckInputs = [ pytestCheckHook ];
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preCheck = ''
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rm -rf radiomics
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'';
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# tries to access network at collection time:
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disabledTestPaths = [ "tests/test_wavelet.py" ];
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# various urllib download errors and (probably related) missing feature errors:
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disabledTests = [
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"brain1_shape2D-original_shape2D"
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"brain2_shape2D-original_shape2D"
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"breast1_shape2D-original_shape2D"
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"lung1_shape2D-original_shape2D"
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"lung2_shape2D-original_shape2D"
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];
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# note the above elements of disabledTests are patterns, not exact tests,
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# so simply setting `disabledTests` does not suffice:
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pytestFlagsArray = [
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"-k '${toString (lib.intersperse "and" (lib.forEach disabledTests (t: "not ${t}")))}'"
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];
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pythonImportsCheck = [
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"radiomics"
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];
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meta = with lib; {
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homepage = "https://pyradiomics.readthedocs.io";
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description = "Extraction of Radiomics features from 2D and 3D images and binary masks";
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mainProgram = "pyradiomics";
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changelog = "https://github.com/AIM-Harvard/pyradiomics/releases/tag/v${version}";
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license = licenses.bsd3;
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maintainers = with maintainers; [ bcdarwin ];
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};
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}
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