stuebinm
ff1a94e523
The nixpkgs-unstable channel's programs.sqlite was used to identify packages producing exactly one binary, and these automatically added to their package definitions wherever possible.
92 lines
2.1 KiB
Nix
92 lines
2.1 KiB
Nix
{ lib
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, stdenv
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, buildPythonPackage
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, fetchFromGitHub
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, flit-core
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, numpy
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, pillow
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, pytestCheckHook
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, pythonOlder
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, setuptools
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}:
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let
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pname = "pydicom";
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version = "2.4.4";
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src = fetchFromGitHub {
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owner = "pydicom";
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repo = "pydicom";
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rev = "refs/tags/v${version}";
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hash = "sha256-iJE1horEmdL7bKPn+NlZLgmtCbLZCZWQ8NjDBQPzXk8=";
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};
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# Pydicom needs pydicom-data to run some tests. If these files aren't downloaded
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# before the package creation, it'll try to download during the checkPhase.
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test_data = fetchFromGitHub {
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owner = "pydicom";
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repo = "pydicom-data";
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rev = "cbb9b2148bccf0f550e3758c07aca3d0e328e768";
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hash = "sha256-nF/j7pfcEpWHjjsqqTtIkW8hCEbuQ3J4IxpRk0qc1CQ=";
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};
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in
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buildPythonPackage {
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inherit pname version src;
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pyproject = true;
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disabled = pythonOlder "3.10";
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patches = [
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# backport of https://github.com/pydicom/pydicom/commit/2513a20cc41743a42bdb86f4cbb4873899b7823c
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./pillow-10.1.0-compat.patch
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];
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nativeBuildInputs = [
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flit-core
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];
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propagatedBuildInputs = [
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numpy
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pillow
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setuptools
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];
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nativeCheckInputs = [
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pytestCheckHook
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];
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# Setting $HOME to prevent pytest to try to create a folder inside
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# /homeless-shelter which is read-only.
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# Linking pydicom-data dicom files to $HOME/.pydicom/data
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preCheck = ''
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export HOME=$TMP/test-home
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mkdir -p $HOME/.pydicom/
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ln -s ${test_data}/data_store/data $HOME/.pydicom/data
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'';
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disabledTests = [
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# tries to remove a dicom inside $HOME/.pydicom/data/ and download it again
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"test_fetch_data_files"
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] ++ lib.optionals stdenv.isAarch64 [
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# https://github.com/pydicom/pydicom/issues/1386
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"test_array"
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] ++ lib.optionals stdenv.isDarwin [
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# flaky, hard to reproduce failure outside hydra
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"test_time_check"
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];
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pythonImportsCheck = [
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"pydicom"
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];
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meta = with lib; {
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description = "Python package for working with DICOM files";
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mainProgram = "pydicom";
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homepage = "https://pydicom.github.io";
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changelog = "https://github.com/pydicom/pydicom/releases/tag/v${version}";
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license = licenses.mit;
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maintainers = with maintainers; [ bcdarwin ];
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};
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}
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