Gaetan Lepage
98 lines
2.0 KiB
Nix
98 lines
2.0 KiB
Nix
{
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lib,
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buildPythonPackage,
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fetchFromGitHub,
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fetchpatch2,
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pythonAtLeast,
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pythonOlder,
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# build-system
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hatch-vcs,
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hatchling,
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# dependencies
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numpy,
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packaging,
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importlib-resources,
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typing-extensions,
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# optional-dependencies
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pydicom,
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pillow,
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h5py,
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scipy,
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addBinToPathHook,
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gitMinimal,
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pytest-doctestplus,
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pytest-httpserver,
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pytest-xdist,
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pytest7CheckHook,
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}:
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buildPythonPackage (finalAttrs: {
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pname = "nibabel";
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version = "5.3.3";
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pyproject = true;
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src = fetchFromGitHub {
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owner = "nipy";
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repo = "nibabel";
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tag = finalAttrs.version;
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hash = "sha256-Kdz7kCY5QnA9OiV/FPW1RerjP1GGLn+YaTwFpA0dJAM=";
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};
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patches = [
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(fetchpatch2 {
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url = "https://github.com/nipy/nibabel/commit/3f40a3bc0c4bd996734576a15785ad0f769a963a.patch?full_index=1";
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hash = "sha256-URsxgP6Sd5IIOX20GtAYtWBWOhw+Hiuhgu1oa8o8NXk=";
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})
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];
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build-system = [
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hatch-vcs
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hatchling
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];
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dependencies = [
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numpy
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packaging
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]
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++ lib.optionals (pythonOlder "3.12") [ importlib-resources ]
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++ lib.optionals (pythonOlder "3.13") [ typing-extensions ];
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optional-dependencies = lib.fix (self: {
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all = self.dicom ++ self.dicomfs ++ self.minc2 ++ self.spm ++ self.zstd;
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dicom = [ pydicom ];
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dicomfs = [ pillow ] ++ self.dicom;
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minc2 = [ h5py ];
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spm = [ scipy ];
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zstd = [
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# TODO: pyzstd
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];
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});
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nativeCheckInputs = [
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addBinToPathHook
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gitMinimal
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pytest-doctestplus
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pytest-httpserver
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pytest-xdist
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pytest7CheckHook
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]
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++ finalAttrs.passthru.optional-dependencies.all;
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disabledTests = lib.optionals (pythonAtLeast "3.14") [
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# https://github.com/nipy/nibabel/issues/1390
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"test_deprecator_maker"
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];
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meta = {
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homepage = "https://nipy.org/nibabel";
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changelog = "https://github.com/nipy/nibabel/blob/${finalAttrs.version}/Changelog";
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description = "Access a multitude of neuroimaging data formats";
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license = lib.licenses.mit;
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maintainers = with lib.maintainers; [ ashgillman ];
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};
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})
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