Gaetan Lepage
9bf9db42b3
Diff: https://github.com/ome/ome-zarr-py/compare/v0.12.2...v0.13.0 Changelog: https://github.com/ome/ome-zarr-py/blob/v0.13.0/CHANGELOG.md
120 lines
2.8 KiB
Nix
120 lines
2.8 KiB
Nix
{
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lib,
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buildPythonPackage,
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fetchFromGitHub,
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# build-system
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setuptools,
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setuptools-scm,
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# dependencies
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aiohttp,
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dask,
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fsspec,
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numpy,
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rangehttpserver,
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requests,
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scikit-image,
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toolz,
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zarr,
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# tests
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ome-zarr-models,
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pytestCheckHook,
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}:
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buildPythonPackage (finalAttrs: {
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pname = "ome-zarr";
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version = "0.13.0";
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pyproject = true;
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src = fetchFromGitHub {
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owner = "ome";
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repo = "ome-zarr-py";
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tag = "v${finalAttrs.version}";
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hash = "sha256-bRksh6ZKqF6cL6XnWBsQRb4gRVxH/vutKtep6SyFo48=";
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};
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build-system = [
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setuptools
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setuptools-scm
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];
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pythonRelaxDeps = [
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"dask"
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];
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dependencies = [
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aiohttp
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dask
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fsspec
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numpy
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rangehttpserver
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requests
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scikit-image
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toolz
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zarr
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]
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++ fsspec.optional-dependencies.s3;
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nativeCheckInputs = [
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ome-zarr-models
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pytestCheckHook
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];
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disabledTests = [
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# attempts to access network
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"test_s3_info"
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# AssertionError: assert {'blocksize':... 'blosc', ...} == {'blocksize':... 'blosc', ...}
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# comp {'id': 'blosc', 'cname': 'lz4', 'clevel': 5, 'shuffle': 1, 'blocksize': 0}
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"test_default_compression"
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"test_write_image_compressed"
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];
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disabledTestPaths = [
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# Fail with RecursionError
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# https://github.com/ome/ome-zarr-py/issues/352
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"tests/test_cli.py::TestCli::test_astronaut_download"
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"tests/test_cli.py::TestCli::test_astronaut_info"
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"tests/test_cli.py::TestCli::test_coins_info"
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"tests/test_emitter.py::test_close"
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"tests/test_emitter.py::test_create_wrong_encoding"
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"tests/test_node.py::TestNode::test_image"
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"tests/test_node.py::TestNode::test_label"
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"tests/test_node.py::TestNode::test_labels"
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"tests/test_ome_zarr.py::TestOmeZarr::test_download"
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"tests/test_ome_zarr.py::TestOmeZarr::test_info"
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"tests/test_reader.py::TestReader::test_image"
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"tests/test_reader.py::TestReader::test_label"
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"tests/test_reader.py::TestReader::test_labels"
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"tests/test_starting_points.py::TestStartingPoints::test_label"
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"tests/test_starting_points.py::TestStartingPoints::test_labels"
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"tests/test_starting_points.py::TestStartingPoints::test_top_level"
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# tries to access network:
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"ome_zarr/io.py"
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];
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pythonImportsCheck = [
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"ome_zarr"
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"ome_zarr.cli"
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"ome_zarr.csv"
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"ome_zarr.data"
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"ome_zarr.format"
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"ome_zarr.io"
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"ome_zarr.reader"
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"ome_zarr.writer"
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"ome_zarr.scale"
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"ome_zarr.utils"
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];
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meta = {
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description = "Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud";
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homepage = "https://pypi.org/project/ome-zarr";
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changelog = "https://github.com/ome/ome-zarr-py/blob/${finalAttrs.src.tag}/CHANGELOG.md";
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license = lib.licenses.bsd2;
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maintainers = [ lib.maintainers.bcdarwin ];
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mainProgram = "ome_zarr";
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};
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})
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