Gaetan Lepage
95 lines
2.2 KiB
Nix
95 lines
2.2 KiB
Nix
{
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lib,
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buildPythonPackage,
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fetchFromGitHub,
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pythonAtLeast,
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# build-system
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hatch-vcs,
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hatchling,
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# dependencies
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pydantic,
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pydantic-zarr,
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zarr,
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# tests
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aiohttp,
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fsspec,
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pytest-cov-stub,
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pytest-vcr,
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pytestCheckHook,
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}:
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buildPythonPackage (finalAttrs: {
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pname = "ome-zarr-models";
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version = "1.5";
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pyproject = true;
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src = fetchFromGitHub {
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owner = "ome-zarr-models";
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repo = "ome-zarr-models-py";
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tag = "v${finalAttrs.version}";
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hash = "sha256-lEzYP4AcEV6EtE+E8yqNHJPIPJ0RwWtzm77fcdxYGYk=";
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};
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build-system = [
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hatch-vcs
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hatchling
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];
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dependencies = [
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pydantic
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pydantic-zarr
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zarr
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];
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pythonImportsCheck = [ "ome_zarr_models" ];
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nativeCheckInputs = [
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aiohttp
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fsspec
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pytest-cov-stub
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pytest-vcr
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pytestCheckHook
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];
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disabledTests = [
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# Require internet connection
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"test_bioformats2raw_get_image"
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"test_load_remote_data"
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]
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++ lib.optionals (pythonAtLeast "3.14") [
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# pydantic.errors.PydanticUserError: `Image` is not fully defined; you should define all
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# referenced types, then call `Image.model_rebuild()`.
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"test_datasets"
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"test_example_hcs"
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"test_from_zarr_ectopic_group"
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"test_from_zarr_missing_array"
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"test_global_transform"
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"test_image"
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"test_multiscale_group_ectopic_group"
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"test_multiscale_group_missing_arrays"
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"test_new_image"
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"test_no_global_transform"
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"test_non_existent_wells"
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"test_non_existent_wells_from_zarr"
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"test_well"
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# RuntimeError: Could not successfully validate
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# <Group file:///build/source/tests/data/examples/v04/hcs_example.ome.zarr> against any OME-Zarr
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# group model
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"test_cli_validate"
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"test_load_ome_zarr_group"
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];
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meta = {
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description = "Minimal Python package for reading, writing and validating OME-Zarr (meta)data";
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homepage = "https://ome-zarr-models-py.readthedocs.io/en/stable";
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downloadPage = "https://github.com/ome-zarr-models/ome-zarr-models-py";
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changelog = "https://github.com/ome-zarr-models/ome-zarr-models-py/releases/tag/${finalAttrs.src.tag}";
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license = lib.licenses.mit;
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maintainers = with lib.maintainers; [ GaetanLepage ];
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};
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})
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