Ben Darwin
79 lines
1.3 KiB
Nix
79 lines
1.3 KiB
Nix
{
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lib,
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buildPythonPackage,
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datalad,
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dcm2niix,
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dcmstack,
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etelemetry,
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fetchPypi,
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filelock,
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git,
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git-annex,
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nibabel,
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nipype,
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pydicom,
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pytestCheckHook,
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setuptools,
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versioningit,
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}:
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buildPythonPackage rec {
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pname = "heudiconv";
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version = "1.3.4";
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pyproject = true;
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src = fetchPypi {
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inherit pname version;
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hash = "sha256-zT/xy9f0GBmhGJm4Gd0ZEKNSifBBjx0RmTOqq6qN4ao=";
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};
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postPatch = ''
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substituteInPlace pyproject.toml \
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--replace-fail "versioningit ~=" "versioningit >="
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'';
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build-system = [
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setuptools
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versioningit
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];
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dependencies = [
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dcmstack
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etelemetry
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filelock
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nibabel
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nipype
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pydicom
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];
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nativeCheckInputs = [
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datalad
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dcm2niix
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pytestCheckHook
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git
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git-annex
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];
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preCheck = ''
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export HOME=$(mktemp -d)
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'';
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pythonImportsCheck = [ "heudiconv" ];
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disabledTests = [
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# No such file or directory
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"test_bvals_are_zero"
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# tries to access internet
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"test_partial_xa_conversion"
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];
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meta = {
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description = "Flexible DICOM converter for organizing imaging data";
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homepage = "https://heudiconv.readthedocs.io";
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changelog = "https://github.com/nipy/heudiconv/releases/tag/v${version}";
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license = lib.licenses.asl20;
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maintainers = with lib.maintainers; [ bcdarwin ];
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};
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}
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