Gaetan Lepage
481f21a3e7
Diff: https://github.com/graspologic-org/graspologic/compare/refs/tags/v3.4.1...refs/tags/v3.4.4 Changelog: https://github.com/graspologic-org/graspologic/releases/tag/v3.4.4
122 lines
2.1 KiB
Nix
122 lines
2.1 KiB
Nix
{
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lib,
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stdenv,
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buildPythonPackage,
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fetchFromGitHub,
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# build-system
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poetry-core,
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poetry-dynamic-versioning,
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# dependencies
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anytree,
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beartype,
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future,
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gensim,
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graspologic-native,
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hyppo,
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joblib,
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matplotlib,
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networkx,
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numpy,
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pot,
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scikit-learn,
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scipy,
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seaborn,
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statsmodels,
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typing-extensions,
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umap-learn,
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# tests
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pytestCheckHook,
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testfixtures,
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}:
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buildPythonPackage rec {
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pname = "graspologic";
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version = "3.4.4";
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pyproject = true;
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src = fetchFromGitHub {
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owner = "graspologic-org";
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repo = "graspologic";
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tag = "v${version}";
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hash = "sha256-ulsb7jD/tIVEISjnNRif7VO+ZcXCAGIFl1SNZhOC7ik=";
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};
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# Fix numpy 2 compat
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postPatch = ''
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substituteInPlace graspologic/utils/utils.py \
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--replace-fail "np.float_" "np.float64"
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substituteInPlace graspologic/embed/omni.py \
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--replace-fail \
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"A = np.array(graphs, copy=False, ndmin=3)" \
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"A = np.asarray(graphs)"
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'';
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build-system = [
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poetry-core
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poetry-dynamic-versioning
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];
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pythonRelaxDeps = [
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"beartype"
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"hyppo"
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"numpy"
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"scipy"
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];
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dependencies = [
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anytree
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beartype
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future
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gensim
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graspologic-native
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hyppo
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joblib
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matplotlib
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networkx
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numpy
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pot
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scikit-learn
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scipy
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seaborn
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statsmodels
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typing-extensions
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umap-learn
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];
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env.NUMBA_CACHE_DIR = "$TMPDIR";
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nativeCheckInputs = [
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pytestCheckHook
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testfixtures
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];
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enabledTestPaths = [
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"tests"
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];
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disabledTests = [ "gridplot_outputs" ];
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disabledTestPaths = [
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"docs"
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]
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++ lib.optionals stdenv.hostPlatform.isDarwin [
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# SIGABRT
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"tests/test_plot.py"
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"tests/test_plot_matrix.py"
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# Hang forever
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"tests/pipeline/embed/"
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];
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meta = {
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description = "Package for graph statistical algorithms";
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homepage = "https://graspologic-org.github.io/graspologic";
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changelog = "https://github.com/graspologic-org/graspologic/releases/tag/${src.tag}";
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license = lib.licenses.mit;
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maintainers = with lib.maintainers; [ bcdarwin ];
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};
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}
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