Gaetan Lepage
143 lines
2.8 KiB
Nix
143 lines
2.8 KiB
Nix
{
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lib,
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stdenv,
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buildPythonPackage,
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fetchFromGitHub,
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# nativeBuildInputs
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writableTmpDirAsHomeHook,
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# build-system
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packaging,
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setuptools,
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# dependencies
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h5netcdf,
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matplotlib,
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numpy,
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pandas,
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platformdirs,
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scipy,
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typing-extensions,
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xarray,
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xarray-einstats,
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# tests
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bokeh,
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cloudpickle,
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emcee,
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ffmpeg,
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h5py,
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jax,
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jaxlib,
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numba,
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numpyro,
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#, pymc3 (circular dependency)
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pyro-ppl,
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#, pystan (not packaged)
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pytestCheckHook,
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torchvision,
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zarr,
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}:
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buildPythonPackage (finalAttrs: {
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pname = "arviz";
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version = "0.23.4";
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pyproject = true;
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src = fetchFromGitHub {
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owner = "arviz-devs";
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repo = "arviz";
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tag = "v${finalAttrs.version}";
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hash = "sha256-YQ5i+CSuznbWAQ29jgqrOs+zgOAS5U4wSNEIquJQkvY=";
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};
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nativeBuildInputs = [
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# Arviz wants to write a stamp file to the homedir at import time.
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# Without $HOME being writable, `pythonImportsCheck` fails.
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# https://github.com/arviz-devs/arviz/commit/4db612908f588d89bb5bfb6b83a08ada3d54fd02
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writableTmpDirAsHomeHook
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];
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build-system = [
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packaging
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setuptools
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];
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dependencies = [
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h5netcdf
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h5py
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matplotlib
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numpy
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pandas
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platformdirs
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scipy
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typing-extensions
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xarray
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xarray-einstats
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];
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nativeCheckInputs = [
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bokeh
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cloudpickle
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emcee
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ffmpeg
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jax
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jaxlib
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numba
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numpyro
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# pymc3 (circular dependency)
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pyro-ppl
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# pystan (not packaged)
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pytestCheckHook
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torchvision
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zarr
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];
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enabledTestPaths = [
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"arviz/tests/base_tests/"
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];
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disabledTestPaths = [
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# AttributeError: module 'zarr.storage' has no attribute 'DirectoryStore'
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# https://github.com/arviz-devs/arviz/issues/2357
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"arviz/tests/base_tests/test_data_zarr.py::TestDataZarr::test_io_function"
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"arviz/tests/base_tests/test_data_zarr.py::TestDataZarr::test_io_method"
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];
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disabledTests = [
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# TypeError: only 0-dimensional arrays can be converted to Python scalars
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"test_deterministic"
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"test_mcse_array"
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"test_mcse_dataset"
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"test_mcse_nan"
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"test_multichain_summary_array"
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"test_numba_mcse"
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"test_plot_mcse"
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# Tests require network access
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"test_plot_ppc_transposed"
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"test_plot_separation"
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"test_plot_trace_legend"
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"test_cov"
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# countourpy is not available at the moment
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"test_plot_kde"
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"test_plot_kde_2d"
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"test_plot_pair"
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];
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# Tests segfault on darwin
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doCheck = !stdenv.hostPlatform.isDarwin;
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pythonImportsCheck = [ "arviz" ];
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meta = {
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description = "Library for exploratory analysis of Bayesian models";
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homepage = "https://arviz-devs.github.io/arviz/";
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changelog = "https://github.com/arviz-devs/arviz/blob/${finalAttrs.src.tag}/CHANGELOG.md";
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license = lib.licenses.asl20;
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maintainers = with lib.maintainers; [ omnipotententity ];
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};
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})
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