84 lines
1.5 KiB
Nix
84 lines
1.5 KiB
Nix
{
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lib,
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stdenv,
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python,
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buildPythonPackage,
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fetchFromGitHub,
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cython,
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pybind11,
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tiledb,
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numpy,
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wheel,
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isPy3k,
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setuptools-scm,
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psutil,
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pandas,
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cmake,
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ninja,
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scikit-build-core,
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packaging,
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pytest,
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hypothesis,
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pyarrow,
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}:
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buildPythonPackage rec {
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pname = "tiledb";
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version = "0.35.0";
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format = "pyproject";
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src = fetchFromGitHub {
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owner = "TileDB-Inc";
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repo = "TileDB-Py";
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tag = version;
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hash = "sha256-uxfF2uyGlO1Dfsrw0hxuU6LmymWXmuvOe+9DEY8BEdQ=";
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};
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build-system = [
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cython
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pybind11
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setuptools-scm
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scikit-build-core
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packaging
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cmake
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ninja
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];
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buildInputs = [ tiledb ];
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propagatedBuildInputs = [
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numpy
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];
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nativeCheckInputs = [
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psutil
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# optional
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pandas
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pytest
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hypothesis
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pyarrow
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];
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TILEDB_PATH = tiledb;
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disabled = !isPy3k; # Not bothering with python2 anymore
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dontUseCmakeConfigure = true;
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# We have to run pytest from a diffferent directory to force it to import tiledb from $out
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# otherwise it cannot be imported because extension modules are not compiled in sources
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checkPhase = ''
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pushd "$TMPDIR"
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${python.interpreter} -m pytest --pyargs tiledb${lib.optionalString stdenv.isDarwin " -k 'not test_ctx_thread_cleanup and not test_array'"}
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popd
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'';
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pythonImportsCheck = [ "tiledb" ];
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meta = {
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description = "Python interface to the TileDB storage manager";
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homepage = "https://github.com/TileDB-Inc/TileDB-Py";
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license = lib.licenses.mit;
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};
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}
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